Citrus Sinensis ID: 042772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MSVQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHccEEEEccccccccEEEEccccHHcccHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccccccccccccHHHHHHHHHHccccccccccccEEEEEccccccEEEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccEEEEEEEccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEccccccccccccccEEEccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHccEEEEccccccccEEEEcccHHHcccccHHHHccccccEEccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEEEEEEcccccEEEEEEEEEEccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHcccccccccccccccccccHHHHHHHHccccccccHHHEEEEEEEEEcccEEEEEEEEcccccEEEEEEEEHHHHHHcccHHHHHHHHHHHcccccccEccEEEEEEcccEEEEEEEcccccEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccEEcccccHHHcEEcccccEEEcccccccEcccccccccccccccHHHHHHHHHHcEEEEcc
Coil and Loop (DISEMBL)
msvqeagrnsrksgrnslmglkvrspslagkhepqpsiapevfmtkdlkwtdswdrAERERDIRQGIDLATTLERIEKnfvitdpripdnpiifasDSFLELTeytreeilgrncsflelteytreeilgrncstYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGvqldgsdhveplrnrlseKTEQQSAKIVKATAENVNEAVRelpdanlrpedlwaihsqpvfprphkrdnsswIAIQKITgsgekiglhhfkpikplgcgdtgsvHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMslldhpflptlyasfqtsthiclitdfcpggelfalldkqpmkifredSARFYAAEVVIGLEYLHCLGIIyrdlkpenillqkdghvvltdfdlsfmtsckpqvfyhaHVNGFYFIMYKWLtgyftyvp
Flexible Loop (DISEMBL)
msvqeagrnsrksgrnslmglkvrspslagkhepqpsiapevfmtkdLKWTdswdraererdirqgidlattlerieknfvitdpripdnpIIFASDSFLELTEYTReeilgrncsfleLTEYTreeilgrncsTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRlsekteqqsaKIVKATAENVNEAVRELPDANLRPEDLWAihsqpvfprphkrdnsSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP
Low Complexity Region (SEG)
MSVQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP
Disordered region (IsUnstruct)
*****************************************VFMTKDLKWTDSWDRAERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD**********************************************DLWAIHSQPVF********SSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYV*
Disordered Region (DISOPRED)
****************************************************************QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGC*********TVSKIRDAVREQREITVQLINYTKSGKKFWNLF*********************************************************************************************************HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP
Disordered Region (DISEMBL)
*************GRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRL***********VKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP
Disordered Region (DISPRO)
************************************************************RDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPD**************************************EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	489	2.2.26 [Sep-21-2011]
Q9ST27	907	Phototropin-2 OS=Oryza sa	yes	no	0.854	0.460	0.724	0.0
P93025	915	Phototropin-2 OS=Arabidop	yes	no	0.858	0.459	0.706	0.0
Q2RBR1	921	Phototropin-1B OS=Oryza s	no	no	0.856	0.454	0.586	1e-159
Q2QYY8	921	Phototropin-1A OS=Oryza s	no	no	0.871	0.462	0.581	1e-157
O48963	996	Phototropin-1 OS=Arabidop	no	no	0.836	0.410	0.600	1e-154
P15792	609	Protein kinase PVPK-1 OS=	N/A	no	0.382	0.307	0.529	8e-54
A2YBX5	589	Protein kinase G11A OS=Or	N/A	no	0.472	0.392	0.450	1e-53
Q0DCT8	589	Protein kinase G11A OS=Or	no	no	0.472	0.392	0.450	2e-53
Q9LFA2	934	Serine/threonine-protein	no	no	0.376	0.197	0.510	3e-50
Q05999	578	Serine/threonine-protein	no	no	0.390	0.330	0.497	3e-50

>sp|Q9ST27|PHOT2_ORYSJ Phototropin-2 OS=Oryza sativa subsp. japonica GN=PHOT2 PE=1 SV=1

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/464 (72%), Positives = 366/464 (78%), Gaps = 46/464 (9%)

Query: 9   NSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKW----TDSWDRAERERDIR 64
           + RKSGR+SLMG K+   S  G  E    +                TDSW+RAERE+DIR
Sbjct: 315 SGRKSGRSSLMGFKIGKRSSVGSREAPAVVEEPAPAPPPAPEVVERTDSWERAEREKDIR 374

Query: 65  QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYT 124
           QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTE                  YT
Sbjct: 375 QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTE------------------YT 416

Query: 125 REEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREIT 184
           REEILGRNC                     F  G      +DQ TV KIR+A+REQ+EIT
Sbjct: 417 REEILGRNC--------------------RFLQGP----ETDQGTVDKIREAIREQKEIT 452

Query: 185 VQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAK 244
           VQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGSDHVEPLRNRLSE TE QSAK
Sbjct: 453 VQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSENTEIQSAK 512

Query: 245 IVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIG 304
           +VKATAENV++AVRELPDANLRPEDLWAIHS  V P+PHKR+N SWIAI+K T  GEKIG
Sbjct: 513 LVKATAENVDDAVRELPDANLRPEDLWAIHSMRVSPKPHKRNNPSWIAIEKATNLGEKIG 572

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L HFKP+KPLGCGDTGSVHLVELQG+GEL+AMKAM+KSVMLNRNKVHRACIEREI +LLD
Sbjct: 573 LKHFKPVKPLGCGDTGSVHLVELQGSGELFAMKAMDKSVMLNRNKVHRACIEREIYALLD 632

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HPFLPTLY SFQT TH+CLITDFCPGGELFA+LD+QPMKIFRE+ ARFYAAEVVIGLEYL
Sbjct: 633 HPFLPTLYTSFQTPTHVCLITDFCPGGELFAVLDRQPMKIFREECARFYAAEVVIGLEYL 692

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           HCLGIIYRDLKPENILLQ DGH+VLTDFDLSF+T+ KP V  ++
Sbjct: 693 HCLGIIYRDLKPENILLQADGHIVLTDFDLSFLTTSKPHVIKNS 736

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P93025|PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/467 (70%), Positives = 371/467 (79%), Gaps = 47/467 (10%)

Query: 5   EAGRNSRKSGRNSL-MGLKVRSPSLAGKHEPQPSIAPEVFM--TKDLKWTDSWDRAERER 61
           EA ++ R  GR S   G K++S +   +HE    + PE  M  T+ +   DSWD ++RER
Sbjct: 315 EASKSFRTPGRVSTPTGSKLKSSN--NRHEDLLRMEPEELMLSTEVIGQRDSWDLSDRER 372

Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           DIRQGIDLATTLERIEKNFVI+DPR+PDNPIIFASDSFLELTE                 
Sbjct: 373 DIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTE----------------- 415

Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
            Y+REEILGRNC                     F  G      +DQATV KIRDA+R+QR
Sbjct: 416 -YSREEILGRNC--------------------RFLQGP----ETDQATVQKIRDAIRDQR 450

Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQ 241
           EITVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGSDHVEPL+NRLSE+TE Q
Sbjct: 451 EITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLQNRLSERTEMQ 510

Query: 242 SAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGE 301
           S+K+VKATA NV+EAVRELPDAN RPEDLWA HS+PV+P PH ++++SW AI+KI  SGE
Sbjct: 511 SSKLVKATATNVDEAVRELPDANTRPEDLWAAHSKPVYPLPHNKESTSWKAIKKIQASGE 570

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
            +GLHHFKPIKPLG GDTGSVHLVEL+G GELYAMKAMEK++MLNRNK HRACIEREI+S
Sbjct: 571 TVGLHHFKPIKPLGSGDTGSVHLVELKGTGELYAMKAMEKTMMLNRNKAHRACIEREIIS 630

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           LLDHPFLPTLYASFQTSTH+CLITDFCPGGELFALLD+QPMKI  EDSARFYAAEVVIGL
Sbjct: 631 LLDHPFLPTLYASFQTSTHVCLITDFCPGGELFALLDRQPMKILTEDSARFYAAEVVIGL 690

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           EYLHCLGI+YRDLKPENILL+KDGH+VL DFDLSFMT+C PQ+   A
Sbjct: 691 EYLHCLGIVYRDLKPENILLKKDGHIVLADFDLSFMTTCTPQLIIPA 737

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for photo-induced movements. Mediates calcium spiking of extra- and intracellular origins in response to blue light. Involved in hypocotyl phototropism. Contributes to the chloroplast accumulation in low blue light and mediates their translocation (avoidance response) at high fluence. Regulates stomata opening and photomorphogenesis response of leaf tissue. Not involved in hypocotyl elongation inhibition, anthocyanin accumulation or cotyledon opening.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q2RBR1|PHT1B_ORYSJ Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2

 Score =  562 bits (1448), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/476 (58%), Positives = 335/476 (70%), Gaps = 57/476 (11%)

Query: 10  SRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDIRQGIDL 69
           +RKSG  + MG          K+  +P    +  +  D +  +S++   R +++R+GIDL
Sbjct: 346 TRKSGLRAFMGFLGMGHGSVEKNMLKPR-DEDPLIDSDDERPESFEDEFRRKEMRRGIDL 404

Query: 70  ATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEIL 129
           ATTLERIEKNFVITDPR+PDNPIIFASDSFL+LTEY REEILGRNC FL+  E       
Sbjct: 405 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPE------- 457

Query: 130 GRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLIN 189
                                              +D+ATV KIRDA+  Q E+TVQLIN
Sbjct: 458 -----------------------------------TDRATVRKIRDAIDNQAEVTVQLIN 482

Query: 190 YTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKAT 249
           YTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG++HV+       +   ++   +VK T
Sbjct: 483 YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVQ-------DDAAKEGVVLVKKT 535

Query: 250 AENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFK 309
           A+N++EA +ELPDANLRP+DLWA HS+ V P PH +D +SW AIQK+  SGE IGL HF+
Sbjct: 536 ADNIDEAAKELPDANLRPKDLWANHSKVVLPNPHMKDTASWRAIQKVLESGESIGLKHFR 595

Query: 310 PIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLP 369
           P+KPLG GDTGSVHLVEL   GE +AMKAM+KS+MLNRNKVHRA  ER+I+ LLDHPFLP
Sbjct: 596 PVKPLGSGDTGSVHLVELLNTGEYFAMKAMDKSIMLNRNKVHRATAERQILDLLDHPFLP 655

Query: 370 TLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGI 429
           TLYASFQT THICLITD+CPGGELF LLD QP+K+  ED+ RFYAAEVV+ LEYLHC GI
Sbjct: 656 TLYASFQTKTHICLITDYCPGGELFVLLDNQPLKVLHEDAVRFYAAEVVVALEYLHCQGI 715

Query: 430 IYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY-------HAHVNGFYFIMY 478
           IYRDLKPENILL +DGH+ LTDFDLS +TSC+PQVF            NG Y I +
Sbjct: 716 IYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQVFLPEDADEKKGRKNGSYPIFF 771

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q2QYY8|PHT1A_ORYSJ Phototropin-1A OS=Oryza sativa subsp. japonica GN=PHOT1A PE=1 SV=2

 Score =  556 bits (1432), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 281/483 (58%), Positives = 336/483 (69%), Gaps = 57/483 (11%)

Query: 3   VQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERD 62
           V + G  +RKSG  + MG          K+  +P    +  +  D +  +S++   R ++
Sbjct: 339 VPDQGNRTRKSGLRAFMGFLGMGHGSVEKNMLKPR-DEDPLIDSDDERPESFEDEFRRKE 397

Query: 63  IRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTE 122
           +R+GIDLATTLERIEKNFVITDPR+PDNPIIFASDSFL+LTE                  
Sbjct: 398 MRRGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTE------------------ 439

Query: 123 YTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQRE 182
           Y REEILGRNC                     F  G      +D+ATV KIRDA+  Q E
Sbjct: 440 YNREEILGRNC--------------------RFLQGP----ETDRATVRKIRDAIDNQAE 475

Query: 183 ITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQS 242
           +TVQLINYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG++HV+       +   ++ 
Sbjct: 476 VTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVQ-------DDAAKEG 528

Query: 243 AKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEK 302
             +VK TA+N++EA +ELPDANLRPEDLWA HS+ V P PH +D +SW AIQK+  SGE 
Sbjct: 529 VVLVKKTADNIDEAAKELPDANLRPEDLWANHSKVVLPNPHMKDTASWRAIQKVLESGES 588

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           IGL HF+P+KPLG GDTGSVHLVEL   GE +AMKAM+KS+MLNRNKVHRA  ER+I+ L
Sbjct: 589 IGLKHFRPVKPLGSGDTGSVHLVELLNTGEYFAMKAMDKSIMLNRNKVHRATAERQILDL 648

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           LDHPFLPTLYASFQT THICLITD+CPGGELF LLD QP+K+  ED+ RFYAAEVV+ LE
Sbjct: 649 LDHPFLPTLYASFQTKTHICLITDYCPGGELFVLLDNQPLKVLHEDAVRFYAAEVVVALE 708

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY-------HAHVNGFYF 475
           YLHC GIIYRDLKPENILL +DGH+ LTDFDLS +TSC+PQVF            NG Y 
Sbjct: 709 YLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQVFLPEDADEKKGRKNGSYP 768

Query: 476 IMY 478
           I +
Sbjct: 769 IFF 771

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O48963|PHOT1_ARATH Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1

 Score =  546 bits (1406), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/466 (60%), Positives = 335/466 (71%), Gaps = 57/466 (12%)

Query: 8   RNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEV--FMTKDLKWTDSWDRAE------R 59
           + SRKS   S MG+K +S SL        SI      +  +D + +D  +R E      R
Sbjct: 404 KKSRKSSL-SFMGIKKKSESL------DESIDDGFIEYGEEDDEISDRDERPESVDDKVR 456

Query: 60  ERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLE 119
           ++++R+GIDLATTLERIEKNFVITDPR+PDNPIIFASDSFLELTE               
Sbjct: 457 QKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTE--------------- 501

Query: 120 LTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVRE 179
              Y+REEILGRNC                     F  G      +D  TV KIR+A+  
Sbjct: 502 ---YSREEILGRNC--------------------RFLQGP----ETDLTTVKKIRNAIDN 534

Query: 180 QREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTE 239
           Q E+TVQLINYTKSGKKFWN+FHLQPMRD KGE+QYFIGVQLDGS HVEP+RN + E   
Sbjct: 535 QTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEVQYFIGVQLDGSKHVEPVRNVIEETAV 594

Query: 240 QQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGS 299
           ++   +VK TA N++EAVRELPDAN+ PEDLWA HS+ V  +PH++D+  WIAIQK+  S
Sbjct: 595 KEGEDLVKKTAVNIDEAVRELPDANMTPEDLWANHSKVVHCKPHRKDSPPWIAIQKVLES 654

Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           GE IGL HFKP+KPLG GDTGSVHLVEL G  +L+AMKAM+K+VMLNRNKVHRA  EREI
Sbjct: 655 GEPIGLKHFKPVKPLGSGDTGSVHLVELVGTDQLFAMKAMDKAVMLNRNKVHRARAEREI 714

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           + LLDHPFLP LYASFQT THICLITD+ PGGELF LLD+QP K+ +ED+ RFYAA+VV+
Sbjct: 715 LDLLDHPFLPALYASFQTKTHICLITDYYPGGELFMLLDRQPRKVLKEDAVRFYAAQVVV 774

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
            LEYLHC GIIYRDLKPEN+L+Q +G + L+DFDLS +TSCKPQ+ 
Sbjct: 775 ALEYLHCQGIIYRDLKPENVLIQGNGDISLSDFDLSCLTSCKPQLL 820

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for photo-induced movements. Required for blue-light mediated mRNA destabilization. Mediates calcium spiking of extracellular origin in response to low rate of blue light. Mediates also rapid membrane depolarization and growth inhibition in response to blue light. Necessary for root phototropism. Involved in hypocotyl phototropism under low rate but not under high rate blue light. Contributes to the chloroplast accumulation but seems to be not required for chloroplast translocation. Regulates stomata opening and photomorphogenesis response of leaf tissue. Confers sensitivity to drought. Not involved in hypocotyl elongation inhibition, anthocyanin accumulation or cotyledon opening.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P15792|KPK1_PHAVU Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1

 Score =  211 bits (538), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 99/187 (52%), Positives = 129/187 (68%)

Query: 278 VFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMK 337
           V  +PHK ++  W AIQ +      + + HF+ +K LGCGD GSV+L EL G    +AMK
Sbjct: 199 VLYKPHKANDIRWEAIQAVRTRDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMK 258

Query: 338 AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL 397
            M K+ + NR K+ RA  EREI+  LDHPFLPTLY  F+T    CL+ +FCPGG+L AL 
Sbjct: 259 VMNKTELANRKKLLRAQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALR 318

Query: 398 DKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM 457
            +QP K F E + RFY AEV++ LEYLH LGIIYRDLKPEN+L+++DGH++L+DFDLS  
Sbjct: 319 QRQPGKYFSEHAVRFYVAEVLLSLEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLR 378

Query: 458 TSCKPQV 464
            S  P +
Sbjct: 379 CSVSPTL 385

Phaseolus vulgaris (taxid: 3885)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2YBX5|G11A_ORYSI Protein kinase G11A OS=Oryza sativa subsp. indica GN=OsI_021818 PE=2 SV=1

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/233 (45%), Positives = 146/233 (62%), Gaps = 2/233 (0%)

Query: 242 SAKIV--KATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGS 299
           SA++V    T E    + R  P  +    D  A  S     +PHK ++S W AIQ I   
Sbjct: 127 SARLVGRSETGERGFSSSRCRPSTSSDVSDESACSSISSVTKPHKANDSRWEAIQMIRTR 186

Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
              +GL HFK +K LGCGD GSV+L EL G    +AMK M+K+ + +R K+ RA  E+EI
Sbjct: 187 DGILGLSHFKLLKKLGCGDIGSVYLSELNGTKSYFAMKVMDKASLASRKKLLRAQTEKEI 246

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +  LDHPFLPTLY  F+T    CL+ +FCPGG+L  L  +Q  K F E + +FY AE+++
Sbjct: 247 LQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEILL 306

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNG 472
            +EYLH LGIIYRDLKPEN+L+++DGH++L+DFDLS   +  P +   ++ + 
Sbjct: 307 AMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLIRSSNPDA 359

May play a role in the regulation of metabolism and signal transduction processes.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0DCT8|G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/233 (45%), Positives = 146/233 (62%), Gaps = 2/233 (0%)

Query: 242 SAKIV--KATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGS 299
           SA++V    T E    + R  P  +    D  A  S     +PHK ++S W AIQ I   
Sbjct: 127 SARLVGRSETGERGFSSSRCRPSTSSDVSDESACSSISSVTKPHKANDSRWEAIQMIRTR 186

Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
              +GL HFK +K LGCGD GSV+L EL G    +AMK M+K+ + +R K+ RA  E+EI
Sbjct: 187 DGILGLSHFKLLKKLGCGDIGSVYLSELSGTKSYFAMKVMDKASLASRKKLLRAQTEKEI 246

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +  LDHPFLPTLY  F+T    CL+ +FCPGG+L  L  +Q  K F E + +FY AE+++
Sbjct: 247 LQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEILL 306

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNG 472
            +EYLH LGIIYRDLKPEN+L+++DGH++L+DFDLS   +  P +   ++ + 
Sbjct: 307 AMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLIRSSNPDA 359

May play a role in the regulation of metabolism and signal transduction processes.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFA2|KIPK_ARATH Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1

 Score =  199 bits (507), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 124/184 (67%)

Query: 281 RPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAME 340
           +PH   +  W AI+ I      +GL HF  +K LGCGD G+V+L EL G   L+A+K M+
Sbjct: 511 KPHMSMDVRWEAIKHIKVQYGSLGLRHFNLLKKLGCGDIGTVYLAELIGTNCLFAIKVMD 570

Query: 341 KSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ 400
              +  R K  RA  EREI+ +LDHPFLPTLYA F +    CL+ ++CPGG+L  L  KQ
Sbjct: 571 NEFLARRKKSPRAQAEREILKMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQ 630

Query: 401 PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC 460
             + F E +ARFY AE+++ LEYLH LGIIYRDLKPENIL+++DGH++LTDFDLS   + 
Sbjct: 631 LGRCFPEPAARFYVAEILLALEYLHMLGIIYRDLKPENILVREDGHIMLTDFDLSLRCAV 690

Query: 461 KPQV 464
            P +
Sbjct: 691 NPTL 694

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05999|KPK7_ARATH Serine/threonine-protein kinase AtPK7 OS=Arabidopsis thaliana GN=PK7 PE=2 SV=1

 Score =  199 bits (507), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 133/193 (68%), Gaps = 2/193 (1%)

Query: 281 RPHKRDNSS-WIAIQKITGS-GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKA 338
           +PH+ +N   W+AIQ++    G  +    FK IK LG GD G+V+L EL G G  +A+K 
Sbjct: 153 KPHRDNNDKRWVAIQEVRSRVGSSLEAKDFKLIKKLGGGDIGNVYLAELIGTGVSFAVKV 212

Query: 339 MEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLD 398
           MEK+ +  R K+ RA  E+EI+  LDHPFLPTLY+ F+T  + CL+ +FCPGG+L +L  
Sbjct: 213 MEKAAIAARKKLVRAQTEKEILQSLDHPFLPTLYSHFETEMNSCLVMEFCPGGDLHSLRQ 272

Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  K F E +ARFY AEV++ +EYLH LGIIYRDLKPEN+L+++DGH++L+DFDLS   
Sbjct: 273 KQRGKYFPEQAARFYVAEVLLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRC 332

Query: 459 SCKPQVFYHAHVN 471
           +  P +   A + 
Sbjct: 333 AVSPTLVRFAAIT 345

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
255546656	984	serine/threonine protein kinase, putativ	0.858	0.426	0.773	0.0
225428366	1001	PREDICTED: phototropin-2 [Vitis vinifera	0.865	0.422	0.770	0.0
297744446	979	unnamed protein product [Vitis vinifera]	0.865	0.432	0.770	0.0
60099458	996	phototropin [Phaseolus vulgaris]	0.867	0.425	0.760	0.0
356526675	996	PREDICTED: phototropin-2-like [Glycine m	0.862	0.423	0.753	0.0
401782494	944	phototropin 2 [Fragaria x ananassa]	0.858	0.444	0.750	0.0
356559155	990	PREDICTED: phototropin-2-like [Glycine m	0.860	0.425	0.751	0.0
457711	724	protein kinase [Spinacia oleracea]	0.840	0.567	0.739	0.0
113911589	952	phototropin-2 [Solanum lycopersicum]	0.860	0.442	0.719	0.0
449444602	921	PREDICTED: phototropin-2-like [Cucumis s	0.865	0.459	0.733	0.0

>gi|255546656|ref|XP_002514387.1| serine/threonine protein kinase, putative [Ricinus communis] gi|223546484|gb|EEF47983.1| serine/threonine protein kinase, putative [Ricinus communis]

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/463 (77%), Positives = 386/463 (83%), Gaps = 43/463 (9%)

Query: 4   QEAGRNSRKSGRNSLMGLKVRSPSLAGKHE-PQPSIAPEVFMTKDLKWTDSWDRAERERD 62
           QEA + +RKS R S  GL+ RSPS  G  E P PS+ PE+ MTK++K +DSWD   R+RD
Sbjct: 385 QEASKKTRKSSRISFRGLQARSPSSTGIREAPPPSVDPELLMTKEIKHSDSWDPTGRDRD 444

Query: 63  IRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTE 122
           IRQGIDLATTLERIEKNFVITDPR+PDNPIIFASDSFLELTE                  
Sbjct: 445 IRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTE------------------ 486

Query: 123 YTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQRE 182
           YTREEILGRNC                     F  G      +D ATVSKIRDA+REQRE
Sbjct: 487 YTREEILGRNC--------------------RFLQGP----ETDLATVSKIRDAIREQRE 522

Query: 183 ITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQS 242
           ITVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGSDHVEPLRNRLSE+TE QS
Sbjct: 523 ITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSEQTELQS 582

Query: 243 AKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEK 302
           AK+VKATAENV+EAVRELPDANLRPEDLWAIHSQPVFPRPHKR+N SWIAI++I  SGEK
Sbjct: 583 AKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKRENPSWIAIKEIISSGEK 642

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           IGL HFKPIKPLGCGDTGSVHLVEL+G G+LYAMKAMEKS+MLNRNKVHRACIEREI+SL
Sbjct: 643 IGLQHFKPIKPLGCGDTGSVHLVELKGTGQLYAMKAMEKSMMLNRNKVHRACIEREIISL 702

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           LDHPFLPTLY SFQTSTH+CLITDFCPGGELFALLD+QPMK+F+E+SARFYAAEVVIGLE
Sbjct: 703 LDHPFLPTLYTSFQTSTHVCLITDFCPGGELFALLDRQPMKLFKEESARFYAAEVVIGLE 762

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
           YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM SCKPQ+ 
Sbjct: 763 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMASCKPQIL 805

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428366|ref|XP_002280118.1| PREDICTED: phototropin-2 [Vitis vinifera]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/466 (77%), Positives = 390/466 (83%), Gaps = 43/466 (9%)

Query: 2   SVQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERER 61
           S QEAG+ SRKS R SLMG K +S S     E QPSI PE+ MTKD++ +DSW+RAERER
Sbjct: 405 SRQEAGKKSRKSARISLMGFKSKSISSFSAQECQPSIEPEILMTKDIERSDSWERAERER 464

Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           DIRQGIDLATTLERIEKNFVITDPR+PDNPIIFASDSFLELTE                 
Sbjct: 465 DIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTE----------------- 507

Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
            YTREEILGRNC                     F  G      +DQ TVSKIRDA+R+QR
Sbjct: 508 -YTREEILGRNC--------------------RFLQGP----ETDQGTVSKIRDAIRQQR 542

Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQ 241
           EITVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGSDH+EPLRNRLSE+TEQQ
Sbjct: 543 EITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEQTEQQ 602

Query: 242 SAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGE 301
           SAK+VKATAENV+EAVRELPDANLRPEDLWAIHSQPVFP+PHK++NSSWIAIQKIT   E
Sbjct: 603 SAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPKPHKKNNSSWIAIQKITAR-E 661

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           KIGL HF PI+PLGCGDTGSVHLVEL+G+GELYAMKAM+KSVMLNRNKVHRAC+EREI+S
Sbjct: 662 KIGLSHFNPIRPLGCGDTGSVHLVELKGSGELYAMKAMDKSVMLNRNKVHRACMEREIIS 721

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           +LDHPFLPTLY+SFQT TH+CLITDF PGGELFALLDKQPMKIFRE+SARFYAAEVVIGL
Sbjct: 722 MLDHPFLPTLYSSFQTPTHVCLITDFFPGGELFALLDKQPMKIFREESARFYAAEVVIGL 781

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
           EYLHCLGIIYRDLKPEN++LQKDGHVVL DFDLS MTSCKPQ+  H
Sbjct: 782 EYLHCLGIIYRDLKPENVILQKDGHVVLADFDLSLMTSCKPQIIKH 827

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744446|emb|CBI37708.3| unnamed protein product [Vitis vinifera]

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/466 (77%), Positives = 390/466 (83%), Gaps = 43/466 (9%)

Query: 2   SVQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERER 61
           S QEAG+ SRKS R SLMG K +S S     E QPSI PE+ MTKD++ +DSW+RAERER
Sbjct: 383 SRQEAGKKSRKSARISLMGFKSKSISSFSAQECQPSIEPEILMTKDIERSDSWERAERER 442

Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           DIRQGIDLATTLERIEKNFVITDPR+PDNPIIFASDSFLELTE                 
Sbjct: 443 DIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTE----------------- 485

Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
            YTREEILGRNC                     F  G      +DQ TVSKIRDA+R+QR
Sbjct: 486 -YTREEILGRNC--------------------RFLQGP----ETDQGTVSKIRDAIRQQR 520

Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQ 241
           EITVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGSDH+EPLRNRLSE+TEQQ
Sbjct: 521 EITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEQTEQQ 580

Query: 242 SAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGE 301
           SAK+VKATAENV+EAVRELPDANLRPEDLWAIHSQPVFP+PHK++NSSWIAIQKIT   E
Sbjct: 581 SAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPKPHKKNNSSWIAIQKITAR-E 639

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           KIGL HF PI+PLGCGDTGSVHLVEL+G+GELYAMKAM+KSVMLNRNKVHRAC+EREI+S
Sbjct: 640 KIGLSHFNPIRPLGCGDTGSVHLVELKGSGELYAMKAMDKSVMLNRNKVHRACMEREIIS 699

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           +LDHPFLPTLY+SFQT TH+CLITDF PGGELFALLDKQPMKIFRE+SARFYAAEVVIGL
Sbjct: 700 MLDHPFLPTLYSSFQTPTHVCLITDFFPGGELFALLDKQPMKIFREESARFYAAEVVIGL 759

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
           EYLHCLGIIYRDLKPEN++LQKDGHVVL DFDLS MTSCKPQ+  H
Sbjct: 760 EYLHCLGIIYRDLKPENVILQKDGHVVLADFDLSLMTSCKPQIIKH 805

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60099458|dbj|BAD89968.1| phototropin [Phaseolus vulgaris]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/467 (76%), Positives = 385/467 (82%), Gaps = 43/467 (9%)

Query: 2   SVQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERER 61
           S QE  R SR SGR SL G K +S S AG+ E +  + PEV MTK+++W+++W+ + RER
Sbjct: 398 SNQEKSRTSR-SGRISLKGFKGKSQSSAGRDEEKTIVEPEVLMTKEIEWSNNWEHSLRER 456

Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           DIRQGIDLATTLERIEKNFVI+DPR+PDNPIIFASDSFLELTE                 
Sbjct: 457 DIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTE----------------- 499

Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
            YTREEILGRNC                     F  G      +DQATVS+IRDA+REQR
Sbjct: 500 -YTREEILGRNC--------------------RFLQGP----ETDQATVSRIRDAIREQR 534

Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQ 241
           EITVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGSDHVEPL+NRLSE TE Q
Sbjct: 535 EITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTEFQ 594

Query: 242 SAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGE 301
           SAK+VKATAENV+EAVRELPDANLRPEDLWAIHSQPVFPRPHKRDN SWIAIQK+   GE
Sbjct: 595 SAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNPSWIAIQKVVARGE 654

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           KIGL HF PI+PLGCGDTGSVHLVEL+G GELYAMKAMEK+VMLNRNKVHR+CIEREI+S
Sbjct: 655 KIGLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKTVMLNRNKVHRSCIEREIIS 714

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           LLDHPFLPTLY SFQTSTH+CLI+DFC GGELFALLDKQPMKIF+E+SARFYAAEVVIGL
Sbjct: 715 LLDHPFLPTLYTSFQTSTHVCLISDFCHGGELFALLDKQPMKIFKEESARFYAAEVVIGL 774

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS MTSCKPQV   A
Sbjct: 775 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSSMTSCKPQVVKQA 821

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526675|ref|XP_003531942.1| PREDICTED: phototropin-2-like [Glycine max]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/467 (75%), Positives = 381/467 (81%), Gaps = 45/467 (9%)

Query: 2   SVQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERER 61
           S Q+  + S +SGR S  GLK RSPS A   E +P   PEV MTK+++W+++ + + RER
Sbjct: 400 SSQDKSKTSSRSGRISFKGLKGRSPSSA---EEKPIFEPEVLMTKEIEWSNNLEHSLRER 456

Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           DIRQGIDLATTLERIEKNFVI+DPR+PDNPIIFASDSFLELTE                 
Sbjct: 457 DIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTE----------------- 499

Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
            YTREEILGRNC                     F  G      +DQATVS+IRDA+REQR
Sbjct: 500 -YTREEILGRNC--------------------RFLQGP----ETDQATVSRIRDAIREQR 534

Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQ 241
           EITVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGSDHVEPL+NRLSE TEQQ
Sbjct: 535 EITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTEQQ 594

Query: 242 SAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGE 301
           SAK+VKATAENV+EAVRELPDANLRPEDLWAIHSQPVFPRPHK+DN SWIAIQK+    E
Sbjct: 595 SAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKDNPSWIAIQKVAARDE 654

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           KIGL HF PI+PLGCGDTGSVHLVEL+G GELYAMKAMEKSVMLNRNKVHR+CIEREI+S
Sbjct: 655 KIGLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCIEREIIS 714

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           LLDHPFLPTLY SFQT TH+CLITDF PGGELFALLDKQPMKIF+E+ ARFYAAEVVIGL
Sbjct: 715 LLDHPFLPTLYTSFQTPTHVCLITDFFPGGELFALLDKQPMKIFKEELARFYAAEVVIGL 774

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           EYLHCLGIIYRDLKPENILLQKDGHVVL DFDLSFMTSCKPQV   A
Sbjct: 775 EYLHCLGIIYRDLKPENILLQKDGHVVLADFDLSFMTSCKPQVVKQA 821

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|401782494|dbj|BAM36550.1| phototropin 2 [Fragaria x ananassa]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/465 (75%), Positives = 380/465 (81%), Gaps = 45/465 (9%)

Query: 4   QEAGRNSRKSGRNSLMGLKVRSPSL-AGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERD 62
           Q+AG+  +KS RN  +G   RS SL AG+ E +P + PEV MT D++ +DSWDR ERERD
Sbjct: 347 QDAGKYPKKSERNPSLG--TRSKSLTAGRLEKEPIVEPEVLMTTDIERSDSWDRTERERD 404

Query: 63  IRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTE 122
           IRQGIDLATTLERIEKNFVI+DPRIPDNPIIFASDSFLELTE                  
Sbjct: 405 IRQGIDLATTLERIEKNFVISDPRIPDNPIIFASDSFLELTE------------------ 446

Query: 123 YTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQRE 182
           YTREEILGRNC                     F  G      +DQATV KIRDA+REQRE
Sbjct: 447 YTREEILGRNC--------------------RFLQGP----ETDQATVQKIRDAIREQRE 482

Query: 183 ITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQS 242
           ITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSE+ E +S
Sbjct: 483 ITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSERAELES 542

Query: 243 AKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEK 302
           AK+VKATA NVNEAVRELPDANLRPEDLWAIHSQPVFP+PHKRD++SW+A+Q+IT  GEK
Sbjct: 543 AKVVKATAVNVNEAVRELPDANLRPEDLWAIHSQPVFPKPHKRDSASWLAMQEITSRGEK 602

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           I L HFKPIKPLGCGDTGSVHLVEL+G   LYAMKAMEKS+MLNRNKVHRAC EREI+S 
Sbjct: 603 IDLRHFKPIKPLGCGDTGSVHLVELRGTSILYAMKAMEKSIMLNRNKVHRACTEREIISQ 662

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           LDHPFLPTLY SF+TSTH+CLITDFC GGELFALLDKQPMK F+EDSARFYAAEVVI LE
Sbjct: 663 LDHPFLPTLYTSFETSTHVCLITDFCSGGELFALLDKQPMKFFKEDSARFYAAEVVIALE 722

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
           YLHCLGIIYRDLKPENILLQKDGH+VLTDFDLSF+ SCKPQ+  H
Sbjct: 723 YLHCLGIIYRDLKPENILLQKDGHIVLTDFDLSFLASCKPQIIRH 767

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559155|ref|XP_003547866.1| PREDICTED: phototropin-2-like [Glycine max]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/467 (75%), Positives = 382/467 (81%), Gaps = 46/467 (9%)

Query: 2   SVQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERER 61
           S Q+  R S +SGR S  GLK RS S A   E +  + PEV MTK+++W+++ + + RER
Sbjct: 395 SSQDKSRTS-QSGRISFKGLKGRSLSSA---EEKSIVEPEVLMTKEIEWSNNLEHSLRER 450

Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           DIRQGIDLATTLERIEKNFVI+DPR+PDNPIIFASDSFLELTE                 
Sbjct: 451 DIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTE----------------- 493

Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
            YTREEILGRNC                     F  G      +DQATVS+IRDA+REQR
Sbjct: 494 -YTREEILGRNC--------------------RFLQGP----ETDQATVSRIRDAIREQR 528

Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQ 241
           EITVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGSDHVEPL+NRLSE TEQQ
Sbjct: 529 EITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTEQQ 588

Query: 242 SAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGE 301
           SAK+VKATAENV+EAVRELPDANLRPEDLWAIHSQPVFPRPHK++N SWIAIQK+   GE
Sbjct: 589 SAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKENPSWIAIQKVAARGE 648

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           KIGL HF PI+PLGCGDTGSVHLVEL+G GELYAMKAMEKSVMLNRNKVHR+CIEREI+S
Sbjct: 649 KIGLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCIEREIIS 708

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           LLDHPFLPTLY SFQT TH+CLITDF PGGELFALLDKQPMKIF+E+SARFYAAEVVIGL
Sbjct: 709 LLDHPFLPTLYTSFQTPTHVCLITDFFPGGELFALLDKQPMKIFKEESARFYAAEVVIGL 768

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           EYLHCLGIIYRDLKPENILLQKDGHVVL DFDLS+MTSCKPQV   A
Sbjct: 769 EYLHCLGIIYRDLKPENILLQKDGHVVLADFDLSYMTSCKPQVVKQA 815

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|457711|emb|CAA82993.1| protein kinase [Spinacia oleracea]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/456 (73%), Positives = 371/456 (81%), Gaps = 45/456 (9%)

Query: 14  GRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDIRQGIDLATTL 73
            R SL+G K RS   + KHE  PS  PE  + KD+   DSW+RAERERD+RQGIDLATTL
Sbjct: 142 ARISLLGFKGRS---SAKHERPPSPEPEFLIPKDIDRDDSWERAERERDVRQGIDLATTL 198

Query: 74  ERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNC 133
           ERIEKNFVI+DPR+PDNPIIFASDSFLELTEYTREEILGRNC FL+  E           
Sbjct: 199 ERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPE----------- 247

Query: 134 STYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKS 193
                                          +DQ TV KIRDA++EQR+ITVQLINYTKS
Sbjct: 248 -------------------------------TDQTTVQKIRDAIKEQRDITVQLINYTKS 276

Query: 194 GKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKATAENV 253
           G+KFWNLFHLQPMRD KGELQYFIGVQLDGSDHVEPLRNRLSE+TE QSAK+VKATAENV
Sbjct: 277 GRKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSERTEIQSAKVVKATAENV 336

Query: 254 NEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKP 313
           +EAVRELPDAN RPEDLWAIHS+PV+PRPHKR +SSW AIQKIT +GEK+GL HF PIKP
Sbjct: 337 DEAVRELPDANSRPEDLWAIHSEPVYPRPHKRGSSSWAAIQKITAAGEKVGLEHFNPIKP 396

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LGCGDTGSVHLVEL+     +AMKAM+KSVMLNRNKVHRAC+EREI+S LDHPFLPTLYA
Sbjct: 397 LGCGDTGSVHLVELKVPENWFAMKAMDKSVMLNRNKVHRACVEREIISTLDHPFLPTLYA 456

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           SFQTSTH+CLITDFCPGGELFALLDKQP+KIF+E+SARFYAAEVVIGLEYLHCLGIIYRD
Sbjct: 457 SFQTSTHVCLITDFCPGGELFALLDKQPLKIFKEESARFYAAEVVIGLEYLHCLGIIYRD 516

Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAH 469
           LKPENILLQKDGH+VLTDFDLSF+TSC P +  H  
Sbjct: 517 LKPENILLQKDGHLVLTDFDLSFLTSCNPHIINHPQ 552

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113911589|gb|ABI48276.1| phototropin-2 [Solanum lycopersicum]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/464 (71%), Positives = 382/464 (82%), Gaps = 43/464 (9%)

Query: 4   QEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDI 63
           QE G+ SRKS R SL G K R  S++   E + ++ PE+ MT +++ TDSW+RAERERDI
Sbjct: 359 QELGKKSRKSSRLSLKGSKGRPSSISFPLENEENVGPEIIMT-EVERTDSWERAERERDI 417

Query: 64  RQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEY 123
           RQGIDLATTLERIEKNFVITDPR+PDNPIIFASDSFLELTE                  +
Sbjct: 418 RQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTE------------------F 459

Query: 124 TREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREI 183
           TREEILGRNC                     F  G      +DQATV KIRDA++EQ+EI
Sbjct: 460 TREEILGRNC--------------------RFLQGP----ETDQATVQKIRDAIKEQKEI 495

Query: 184 TVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSA 243
           TVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGSDHVEPLRNRLSE+TE+QSA
Sbjct: 496 TVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSEQTEKQSA 555

Query: 244 KIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKI 303
           K+VKATA NV+EAVRELPDAN RPEDLWA+HS PV+PRPHKR ++ W AI K+T +GE++
Sbjct: 556 KLVKATATNVDEAVRELPDANSRPEDLWALHSLPVYPRPHKRHSALWTAIHKVTANGERL 615

Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           GL++FKP++PLGCGDTGSVHLVEL+G G+L+AMKAM+KS+MLNRNKVHRAC+ERE+++LL
Sbjct: 616 GLNNFKPVRPLGCGDTGSVHLVELKGTGDLFAMKAMDKSIMLNRNKVHRACVEREVIALL 675

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           DHP LPTLY+SFQT TH+CLITDFCPGGELFALLD+QPMKIF+E+SARFYAAEV+IGLEY
Sbjct: 676 DHPLLPTLYSSFQTETHVCLITDFCPGGELFALLDRQPMKIFKEESARFYAAEVLIGLEY 735

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
           LHCLGIIYRDLKPENILLQ DGHVVLTDFDLSF TSCKPQV  H
Sbjct: 736 LHCLGIIYRDLKPENILLQADGHVVLTDFDLSFKTSCKPQVIKH 779

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444602|ref|XP_004140063.1| PREDICTED: phototropin-2-like [Cucumis sativus]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/466 (73%), Positives = 372/466 (79%), Gaps = 43/466 (9%)

Query: 7   GRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDIRQG 66
           G+  R S R SLMG K +S S A K E      PE+ MT +++ +DSWDRAERE+DIRQG
Sbjct: 328 GKKPRLSSRVSLMGFKGKSLSSARKLEVT-DFEPEILMTDEIERSDSWDRAEREKDIRQG 386

Query: 67  IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTRE 126
           IDLATTLERIEKNFVITDPR+PDNPIIFASDSFLELTE                  YTRE
Sbjct: 387 IDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTE------------------YTRE 428

Query: 127 EILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQ 186
           EILGRNC                     F  G      +DQ TVSKIRDA+REQREITVQ
Sbjct: 429 EILGRNC--------------------RFLQGP----ETDQETVSKIRDAIREQREITVQ 464

Query: 187 LINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIV 246
           LINYTK+GKKFWNLFHLQPMRD  GELQYFIGVQLDGS HVEPL+NRLSE  E QSAK+V
Sbjct: 465 LINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAELQSAKLV 524

Query: 247 KATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLH 306
           KATAENV+EAVRELPDANLRPEDLWAIHSQPVFPRPHK+ +SSW AIQKI G GEKIGL 
Sbjct: 525 KATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKIIGRGEKIGLK 584

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
           HFKPIKPLGCGDTGSVHLVEL G  ELYA+KAMEKS +LNRNKVHRACIER+I++LLDHP
Sbjct: 585 HFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHP 644

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           FLPTLY SF+T TH+CLITDFC GGELFALLDKQPMK+F+EDSARFYAAEVVIGLEYLHC
Sbjct: 645 FLPTLYTSFETPTHVCLITDFCSGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHC 704

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNG 472
           LGIIYRDLKPENILLQKDGHV L DFDLS +TSCKPQ+  +  + G
Sbjct: 705 LGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLLQG 750

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
UNIPROTKB|Q9ST27	907	PHOT2 "Phototropin-2" [Oryza s	0.613	0.330	0.86	3.8e-181
TAIR|locus:2155821	915	PHOT2 "phototropin 2" [Arabido	0.621	0.332	0.838	1.3e-176
UNIPROTKB|Q8H935	963	Vfphot1a "Phototropin" [Vicia	0.613	0.311	0.723	9.5e-150
UNIPROTKB|Q2QYY8	921	PHOT1A "Phototropin-1A" [Oryza	0.601	0.319	0.710	6.6e-149
UNIPROTKB|Q2RBR1	921	PHOT1B "Phototropin-1B" [Oryza	0.601	0.319	0.707	1.6e-147
TAIR|locus:2102674	996	PHOT1 "phototropin 1" [Arabido	0.613	0.301	0.703	4.7e-146
UNIPROTKB|Q5I6E9	700	Adi3 "AvrPto-dependent Pto-int	0.372	0.26	0.532	1.1e-52
TAIR|locus:2207470	555	AGC1.7 "AGC kinase 1.7" [Arabi	0.472	0.416	0.459	3.5e-52
TAIR|locus:2133837	506	D6PKL1 "D6 protein kinase like	0.376	0.363	0.532	1.5e-51
TAIR|locus:2178388	498	D6PK "D6 protein kinase" [Arab	0.466	0.457	0.449	4e-51

UNIPROTKB|Q9ST27 PHOT2 "Phototropin-2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1389 (494.0 bits), Expect = 3.8e-181, Sum P(2) = 3.8e-181
 Identities = 258/300 (86%), Positives = 280/300 (93%)

Query:   165 SDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS 224
             +DQ TV KIR+A+REQ+EITVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGS
Sbjct:   433 TDQGTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGS 492

Query:   225 DHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHK 284
             DHVEPLRNRLSE TE QSAK+VKATAENV++AVRELPDANLRPEDLWAIHS  V P+PHK
Sbjct:   493 DHVEPLRNRLSENTEIQSAKLVKATAENVDDAVRELPDANLRPEDLWAIHSMRVSPKPHK 552

Query:   285 RDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM 344
             R+N SWIAI+K T  GEKIGL HFKP+KPLGCGDTGSVHLVELQG+GEL+AMKAM+KSVM
Sbjct:   553 RNNPSWIAIEKATNLGEKIGLKHFKPVKPLGCGDTGSVHLVELQGSGELFAMKAMDKSVM 612

Query:   345 LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI 404
             LNRNKVHRACIEREI +LLDHPFLPTLY SFQT TH+CLITDFCPGGELFA+LD+QPMKI
Sbjct:   613 LNRNKVHRACIEREIYALLDHPFLPTLYTSFQTPTHVCLITDFCPGGELFAVLDRQPMKI 672

Query:   405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV 464
             FRE+ ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ DGH+VLTDFDLSF+T+ KP V
Sbjct:   673 FREECARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQADGHIVLTDFDLSFLTTSKPHV 732

GO:0009785 "blue light signaling pathway" evidence=IDA

GO:0009882 "blue light photoreceptor activity" evidence=IDA

TAIR|locus:2155821 PHOT2 "phototropin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1385 (492.6 bits), Expect = 1.3e-176, Sum P(2) = 1.3e-176
 Identities = 255/304 (83%), Positives = 282/304 (92%)

Query:   165 SDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS 224
             +DQATV KIRDA+R+QREITVQLINYTKSGKKFWNLFHLQPMRD KGELQYFIGVQLDGS
Sbjct:   434 TDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGS 493

Query:   225 DHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHK 284
             DHVEPL+NRLSE+TE QS+K+VKATA NV+EAVRELPDAN RPEDLWA HS+PV+P PH 
Sbjct:   494 DHVEPLQNRLSERTEMQSSKLVKATATNVDEAVRELPDANTRPEDLWAAHSKPVYPLPHN 553

Query:   285 RDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM 344
             ++++SW AI+KI  SGE +GLHHFKPIKPLG GDTGSVHLVEL+G GELYAMKAMEK++M
Sbjct:   554 KESTSWKAIKKIQASGETVGLHHFKPIKPLGSGDTGSVHLVELKGTGELYAMKAMEKTMM 613

Query:   345 LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI 404
             LNRNK HRACIEREI+SLLDHPFLPTLYASFQTSTH+CLITDFCPGGELFALLD+QPMKI
Sbjct:   614 LNRNKAHRACIEREIISLLDHPFLPTLYASFQTSTHVCLITDFCPGGELFALLDRQPMKI 673

Query:   405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV 464
               EDSARFYAAEVVIGLEYLHCLGI+YRDLKPENILL+KDGH+VL DFDLSFMT+C PQ+
Sbjct:   674 LTEDSARFYAAEVVIGLEYLHCLGIVYRDLKPENILLKKDGHIVLADFDLSFMTTCTPQL 733

Query:   465 FYHA 468
                A
Sbjct:   734 IIPA 737

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IMP;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009638 "phototropism" evidence=IGI;IMP

GO:0010118 "stomatal movement" evidence=IGI;IMP

GO:0009902 "chloroplast relocation" evidence=RCA;TAS

GO:0016020 "membrane" evidence=ISS

GO:0009637 "response to blue light" evidence=IGI;RCA

GO:0010181 "FMN binding" evidence=IDA;TAS

GO:0046777 "protein autophosphorylation" evidence=RCA;TAS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009882 "blue light photoreceptor activity" evidence=IMP

GO:0010362 "negative regulation of anion channel activity by blue light" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q8H935 Vfphot1a "Phototropin" [Vicia faba (taxid:3906)]

 Score = 1188 (423.3 bits), Expect = 9.5e-150, Sum P(2) = 9.5e-150
 Identities = 217/300 (72%), Positives = 253/300 (84%)

Query:   165 SDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS 224
             +D ATV KIR A+  Q E+TVQLINYTK+GKKFWNLFHLQPMRD KGE+QYFIGVQLDGS
Sbjct:   491 TDPATVKKIRYAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGS 550

Query:   225 DHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHK 284
              HVEPL N ++E T ++   +VK TAENV++A+RELPDAN++PEDLW  HS+ V P+PH+
Sbjct:   551 QHVEPLHNGIAEDTAKEGENLVKKTAENVDDALRELPDANMKPEDLWMNHSKVVHPKPHR 610

Query:   285 RDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM 344
             R++S+W AIQKI  SGE+IGL HFKPIKPLG GDTGSVHLVEL G    +AMKAM+K VM
Sbjct:   611 REDSAWRAIQKIMESGEQIGLKHFKPIKPLGSGDTGSVHLVELCGTDHHFAMKAMDKGVM 670

Query:   345 LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI 404
              NRNKVHRAC EREI+ +LDHPFLP LYASFQT THICLITD+CPGGELF LLD+QP K+
Sbjct:   671 PNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHICLITDYCPGGELFMLLDRQPAKV 730

Query:   405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV 464
              +ED+ RFYA EVV+ LEYLHC GIIYRDLKPEN+LLQ  GHV LTDFDLS +TSCKP++
Sbjct:   731 LKEDAVRFYATEVVVALEYLHCQGIIYRDLKPENVLLQSTGHVSLTDFDLSCLTSCKPEL 790

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2QYY8 PHOT1A "Phototropin-1A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1171 (417.3 bits), Expect = 6.6e-149, Sum P(2) = 6.6e-149
 Identities = 214/301 (71%), Positives = 251/301 (83%)

Query:   165 SDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS 224
             +D+ATV KIRDA+  Q E+TVQLINYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG+
Sbjct:   458 TDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGT 517

Query:   225 DHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHK 284
             +HV+       +   ++   +VK TA+N++EA +ELPDANLRPEDLWA HS+ V P PH 
Sbjct:   518 EHVQ-------DDAAKEGVVLVKKTADNIDEAAKELPDANLRPEDLWANHSKVVLPNPHM 570

Query:   285 RDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM 344
             +D +SW AIQK+  SGE IGL HF+P+KPLG GDTGSVHLVEL   GE +AMKAM+KS+M
Sbjct:   571 KDTASWRAIQKVLESGESIGLKHFRPVKPLGSGDTGSVHLVELLNTGEYFAMKAMDKSIM 630

Query:   345 LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI 404
             LNRNKVHRA  ER+I+ LLDHPFLPTLYASFQT THICLITD+CPGGELF LLD QP+K+
Sbjct:   631 LNRNKVHRATAERQILDLLDHPFLPTLYASFQTKTHICLITDYCPGGELFVLLDNQPLKV 690

Query:   405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV 464
               ED+ RFYAAEVV+ LEYLHC GIIYRDLKPENILL +DGH+ LTDFDLS +TSC+PQV
Sbjct:   691 LHEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQV 750

Query:   465 F 465
             F
Sbjct:   751 F 751

GO:0009785 "blue light signaling pathway" evidence=IDA

GO:0009882 "blue light photoreceptor activity" evidence=IDA

UNIPROTKB|Q2RBR1 PHOT1B "Phototropin-1B" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1167 (415.9 bits), Expect = 1.6e-147, Sum P(2) = 1.6e-147
 Identities = 213/301 (70%), Positives = 251/301 (83%)

Query:   165 SDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS 224
             +D+ATV KIRDA+  Q E+TVQLINYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG+
Sbjct:   458 TDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGT 517

Query:   225 DHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHK 284
             +HV+       +   ++   +VK TA+N++EA +ELPDANLRP+DLWA HS+ V P PH 
Sbjct:   518 EHVQ-------DDAAKEGVVLVKKTADNIDEAAKELPDANLRPKDLWANHSKVVLPNPHM 570

Query:   285 RDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM 344
             +D +SW AIQK+  SGE IGL HF+P+KPLG GDTGSVHLVEL   GE +AMKAM+KS+M
Sbjct:   571 KDTASWRAIQKVLESGESIGLKHFRPVKPLGSGDTGSVHLVELLNTGEYFAMKAMDKSIM 630

Query:   345 LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI 404
             LNRNKVHRA  ER+I+ LLDHPFLPTLYASFQT THICLITD+CPGGELF LLD QP+K+
Sbjct:   631 LNRNKVHRATAERQILDLLDHPFLPTLYASFQTKTHICLITDYCPGGELFVLLDNQPLKV 690

Query:   405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV 464
               ED+ RFYAAEVV+ LEYLHC GIIYRDLKPENILL +DGH+ LTDFDLS +TSC+PQV
Sbjct:   691 LHEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQV 750

Query:   465 F 465
             F
Sbjct:   751 F 751

GO:0009785 "blue light signaling pathway" evidence=IDA

GO:0009882 "blue light photoreceptor activity" evidence=IDA

TAIR|locus:2102674 PHOT1 "phototropin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1152 (410.6 bits), Expect = 4.7e-146, Sum P(2) = 4.7e-146
 Identities = 211/300 (70%), Positives = 251/300 (83%)

Query:   165 SDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS 224
             +D  TV KIR+A+  Q E+TVQLINYTKSGKKFWN+FHLQPMRD KGE+QYFIGVQLDGS
Sbjct:   520 TDLTTVKKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEVQYFIGVQLDGS 579

Query:   225 DHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHK 284
              HVEP+RN + E   ++   +VK TA N++EAVRELPDAN+ PEDLWA HS+ V  +PH+
Sbjct:   580 KHVEPVRNVIEETAVKEGEDLVKKTAVNIDEAVRELPDANMTPEDLWANHSKVVHCKPHR 639

Query:   285 RDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM 344
             +D+  WIAIQK+  SGE IGL HFKP+KPLG GDTGSVHLVEL G  +L+AMKAM+K+VM
Sbjct:   640 KDSPPWIAIQKVLESGEPIGLKHFKPVKPLGSGDTGSVHLVELVGTDQLFAMKAMDKAVM 699

Query:   345 LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI 404
             LNRNKVHRA  EREI+ LLDHPFLP LYASFQT THICLITD+ PGGELF LLD+QP K+
Sbjct:   700 LNRNKVHRARAEREILDLLDHPFLPALYASFQTKTHICLITDYYPGGELFMLLDRQPRKV 759

Query:   405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV 464
              +ED+ RFYAA+VV+ LEYLHC GIIYRDLKPEN+L+Q +G + L+DFDLS +TSCKPQ+
Sbjct:   760 LKEDAVRFYAAQVVVALEYLHCQGIIYRDLKPENVLIQGNGDISLSDFDLSCLTSCKPQL 819

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009903 "chloroplast avoidance movement" evidence=IMP

GO:0009904 "chloroplast accumulation movement" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009898 "internal side of plasma membrane" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0009637 "response to blue light" evidence=IGI;RCA

GO:0010155 "regulation of proton transport" evidence=IGI;RCA

GO:0010181 "FMN binding" evidence=IDA;TAS

GO:0010362 "negative regulation of anion channel activity by blue light" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009986 "cell surface" evidence=IDA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0009638 "phototropism" evidence=IMP

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0009882 "blue light photoreceptor activity" evidence=IDA

UNIPROTKB|Q5I6E9 Adi3 "AvrPto-dependent Pto-interacting protein 3" [Solanum lycopersicum (taxid:4081)]

 Score = 524 (189.5 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
 Identities = 97/182 (53%), Positives = 129/182 (70%)

Query:   281 RPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAME 340
             +PHK ++  W AI  I      +G+ HFK +K LGCGD GSV+L EL G    +AMK M+
Sbjct:   281 KPHKGNDPRWKAILAIRARDGILGMSHFKLLKRLGCGDIGSVYLSELSGTRCYFAMKVMD 340

Query:   341 KSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ 400
             K+ + +R K+ RA  EREI+ LLDHPFLPTLY  F+T    CL+ ++CPGG+L  L  +Q
Sbjct:   341 KASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQ 400

Query:   401 PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC 460
             P K F E +ARFYAAEV++ LEYLH LG++YRDLKPEN+L++ DGH++L+DFDLS   + 
Sbjct:   401 PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV 460

Query:   461 KP 462
              P
Sbjct:   461 SP 462

GO:0005515 "protein binding" evidence=IPI

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

TAIR|locus:2207470 AGC1.7 "AGC kinase 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 109/237 (45%), Positives = 152/237 (64%)

Query:   235 SEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQ 294
             S  TE QS    K    N N       + + R   + +  S P   +PH   +  W A+ 
Sbjct:    79 SNMTESQSNLNTKPNNNNSNNN----SNMSSRSNSIESTSSNP--SKPHTGGDIRWDAVN 132

Query:   295 KITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRAC 354
              +T  G ++G+  F+ +K LG GD GSV+LVEL+G    +AMK M+K+ + +RNK+ RA 
Sbjct:   133 TLTSKGVQLGISDFRLLKRLGYGDIGSVYLVELRGTITYFAMKVMDKASLASRNKLLRAQ 192

Query:   355 IEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
              EREI+S LDHPFLPTLY+ F+T    CL+ +FC GG L++L  KQP K F ED+ARF+A
Sbjct:   193 TEREILSQLDHPFLPTLYSHFETDKFYCLVMEFCGGGNLYSLRQKQPNKCFTEDAARFFA 252

Query:   415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVN 471
             +EV++ LEYLH LGI+YRDLKPEN+L++ DGH++L+DFDLS   S  P +   + V+
Sbjct:   253 SEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCSVSPTLVKSSSVH 309

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:2133837 D6PKL1 "D6 protein kinase like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 98/184 (53%), Positives = 130/184 (70%)

Query:   281 RPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAME 340
             +PHK ++  W AIQ +      +GL+HF+ +K LGCGD G+VHL EL G    +AMK M+
Sbjct:    96 KPHKANDVRWEAIQAVRTKHGVLGLNHFRLLKRLGCGDIGTVHLAELHGTRCFFAMKVMD 155

Query:   341 KSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ 400
             K  + +R K+ RA  EREI+  LDHPFLPTLY+ F+T    CL+ +FCPGG+L  L  +Q
Sbjct:   156 KGALASRKKLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQRQ 215

Query:   401 PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC 460
             P K F E +A+FY AEV++ +EYLH LGIIYRDLKPEN+L++ DGHV+L+DFDLS   + 
Sbjct:   216 PGKRFSEQAAKFYVAEVLLAMEYLHMLGIIYRDLKPENVLVRDDGHVMLSDFDLSLRCTV 275

Query:   461 KPQV 464
              P V
Sbjct:   276 SPTV 279

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2178388 D6PK "D6 protein kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 103/229 (44%), Positives = 147/229 (64%)

Query:   242 SAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGE 301
             ++KI +      +   R    +++  E   +  S  +  +PHK ++  W AIQ +     
Sbjct:    44 NSKINEQGESGKSSTCRPSTSSDISDESTCSSFSSSI-NKPHKANDVRWEAIQAVRTKHG 102

Query:   302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
              +GL+HF+ +K LGCGD G+VHL EL G    +AMK M+K+ + +R K+ RA  EREI+ 
Sbjct:   103 GLGLNHFRLLKRLGCGDIGTVHLAELNGTRCYFAMKVMDKTALASRKKLLRAQTEREILQ 162

Query:   362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              LDHPFLPTLY+ F+T    CL+ +FCPGG+L  L  +QP K F E +A+FY AEV++ +
Sbjct:   163 CLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQRQPGKRFTEQAAKFYVAEVLLAM 222

Query:   422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHV 470
             EYLH LGIIYRDLKPEN+L++ DGHV+L+DFDLS   +    +   A+V
Sbjct:   223 EYLHMLGIIYRDLKPENVLVRDDGHVMLSDFDLSLRCTVSLSIVRSANV 271

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0010540 "basipetal auxin transport" evidence=IGI

GO:0032880 "regulation of protein localization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93025	PHOT2_ARATH	2, ., 7, ., 1, 1, ., 1	0.7066	0.8588	0.4590	yes	no
Q9ST27	PHOT2_ORYSJ	2, ., 7, ., 1, 1, ., 1	0.7241	0.8548	0.4608	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036312001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (1001 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	489
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	1e-99
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-60
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-50
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	5e-49
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	8e-49
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	7e-44
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	3e-43
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-40
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	3e-40
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	1e-39
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	3e-38
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	4e-38
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	4e-38
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	2e-37
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	2e-37
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	9e-37
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	2e-36
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	3e-36
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	4e-36
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	1e-35
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	1e-35
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-35
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	2e-35
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	7e-35
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-34
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	2e-34
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-34
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	5e-34
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	7e-34
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-33
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	2e-33
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	3e-33
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	6e-33
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	9e-33
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-32
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-32
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	2e-32
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	3e-32
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	9e-32
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	2e-31
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	2e-31
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	2e-31
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	3e-31
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	2e-30
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	5e-30
PRK13557	540	PRK13557, PRK13557, histidine kinase; Provisional	7e-30
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	7e-30
PRK13559	361	PRK13559, PRK13559, hypothetical protein; Provisio	8e-30
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	6e-29
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-28
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-28
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	1e-27
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	1e-27
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	2e-27
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	6e-27
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	9e-27
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	3e-26
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-26
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-25
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	2e-25
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	8e-25
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	1e-24
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	3e-24
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	4e-24
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	5e-24
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-24
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	8e-24
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	1e-23
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	2e-23
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	3e-23
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	1e-22
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	1e-22
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	2e-22
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	1e-21
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-20
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	3e-20
PRK13558	665	PRK13558, PRK13558, bacterio-opsin activator; Prov	2e-19
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	8e-19
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-18
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-18
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	3e-18
pfam13426	101	pfam13426, PAS_9, PAS domain	6e-18
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	1e-17
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-17
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	3e-17
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	6e-17
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	9e-17
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-16
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	5e-16
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-15
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	3e-15
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	5e-15
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	8e-15
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-14
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	3e-14
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	3e-14
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	8e-14
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	8e-14
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	1e-13
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-13
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-13
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-13
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	3e-13
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-13
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	4e-13
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	1e-12
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-12
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-12
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-12
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-12
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	2e-12
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	2e-12
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	8e-12
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	9e-12
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-11
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	4e-11
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	5e-11
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	6e-11
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	9e-11
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	2e-10
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-10
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	3e-10
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	3e-10
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	4e-10
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-10
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	5e-10
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	6e-10
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	6e-10
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	6e-10
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	7e-10
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	1e-09
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	2e-09
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	2e-09
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	2e-09
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	3e-09
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-09
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	3e-09
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	4e-09
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	6e-09
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	7e-09
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	7e-09
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	8e-09
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	9e-09
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	9e-09
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	9e-09
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	2e-08
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	2e-08
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	2e-08
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	3e-08
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	3e-08
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	4e-08
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	6e-08
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	6e-08
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	7e-08
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	1e-07
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	1e-07
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	1e-07
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	2e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	2e-07
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	2e-07
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	2e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	2e-07
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	3e-07
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	4e-07
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	4e-07
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	5e-07
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	7e-07
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	7e-07
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	8e-07
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	9e-07
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	1e-06
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	2e-06
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-06
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	3e-06
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	3e-06
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-06
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	3e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	3e-06
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	4e-06
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	4e-06
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	5e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	5e-06
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	5e-06
smart00086	43	smart00086, PAC, Motif C-terminal to PAS motifs (l	6e-06
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	6e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	6e-06
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	7e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	7e-06
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	7e-06
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	9e-06
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	1e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-05
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	1e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	2e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	2e-05
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-05
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	2e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-05
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-05
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-05
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	3e-05
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	3e-05
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	3e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	3e-05
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	3e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	3e-05
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	3e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	4e-05
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	4e-05
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	4e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	4e-05
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	4e-05
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	4e-05
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	6e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	6e-05
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	7e-05
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	9e-05
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	1e-04
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	1e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	1e-04
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	1e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	1e-04
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	1e-04
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	2e-04
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	2e-04
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	2e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	2e-04
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	3e-04
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	3e-04
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	3e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-04
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	3e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	3e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	3e-04
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	3e-04
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	4e-04
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	5e-04
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	5e-04
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	6e-04
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	6e-04
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	8e-04
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	8e-04
TIGR00229	124	TIGR00229, sensory_box, PAS domain S-box	0.001
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	0.001
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	0.001
TIGR02938	494	TIGR02938, nifL_nitrog, nitrogen fixation negative	0.001
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	0.002
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	0.002
cd08226	328	cd08226, PK_STRAD_beta, Pseudokinase domain of STE	0.002
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	0.002
cd08227	327	cd08227, PK_STRAD_alpha, Pseudokinase domain of ST	0.002
cd00130	103	cd00130, PAS, PAS domain; PAS motifs appear in arc	0.002
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	0.003
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	0.003
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	0.003
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	0.003
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	0.003
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	0.004

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score =  301 bits (774), Expect = 1e-99
 Identities = 97/159 (61%), Positives = 122/159 (76%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
            HFK IK LG GD G V LV L+G G+L+A+K ++K  M+ RNKV R   E+EI++ LDH
Sbjct: 1   KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDH 60

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           PFLPTLYASFQT T++CL+ D+CPGGELF LL +QP K   E+ ARFYAAEV++ LEYLH
Sbjct: 61  PFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH 120

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV 464
            LGI+YRDLKPENILL + GH++L+DFDLS  +  +P  
Sbjct: 121 LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPP 159

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  196 bits (502), Expect = 6e-60
 Identities = 74/142 (52%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V LV  +  G+LYAMK ++K  ++ R +V     ER I+S ++HPF+  L+ 
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHY 60

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           +FQT   + L+ ++ PGGELF+ L K+    F E+ ARFYAAE+V+ LEYLH LGIIYRD
Sbjct: 61  AFQTEEKLYLVLEYAPGGELFSHLSKEGR--FSEERARFYAAEIVLALEYLHSLGIIYRD 118

Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LKPENILL  DGH+ LTDF L+
Sbjct: 119 LKPENILLDADGHIKLTDFGLA 140

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  171 bits (437), Expect = 2e-50
 Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 4/148 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ ++ LG G  G V+L   +  G+L A+K ++K  +  +    R   E +I+  L HP 
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKI--KKDRERILREIKILKKLKHPN 58

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY  F+    + L+ ++C GG+LF LL K+      ED ARFY  +++  LEYLH  
Sbjct: 59  IVRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKR--GRLSEDEARFYLRQILSALEYLHSK 116

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GI++RDLKPENILL +DGHV L DF L+
Sbjct: 117 GIVHRDLKPENILLDEDGHVKLADFGLA 144

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  169 bits (431), Expect = 5e-49
 Identities = 69/145 (47%), Positives = 96/145 (66%), Gaps = 2/145 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ IK LG G  G V LV  +G+G+ YA+K + K+ ++   +V     E+ I+  + HPF
Sbjct: 3   FEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPF 62

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           L  LY SFQ  +++ L+ ++ PGGELF+ L K     F E  ARFYAA+VV+ LEYLH L
Sbjct: 63  LVNLYGSFQDDSNLYLVMEYVPGGELFSHLRK--SGRFPEPVARFYAAQVVLALEYLHSL 120

Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
            I+YRDLKPEN+LL  DG++ +TDF
Sbjct: 121 DIVYRDLKPENLLLDSDGYIKITDF 145

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  168 bits (427), Expect = 8e-49
 Identities = 60/140 (42%), Positives = 93/140 (66%), Gaps = 2/140 (1%)

Query: 320 GSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST 379
           G V L + +  G++YA+K ++K+ M+ +N+V +   ER+I+S    P++  LY SFQ   
Sbjct: 7   GRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKK 66

Query: 380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI 439
           ++ L+ ++ PGG+L +LL+   +    ED AR Y AE+V+ LEYLH  GII+RDLKP+NI
Sbjct: 67  NLYLVMEYLPGGDLASLLEN--VGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNI 124

Query: 440 LLQKDGHVVLTDFDLSFMTS 459
           L+  +GH+ LTDF LS +  
Sbjct: 125 LIDSNGHLKLTDFGLSKVGL 144

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score =  155 bits (395), Expect = 7e-44
 Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 3/153 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HP 366
           FK  K +G G   +V L + +   + YA+K ++K  ++   KV    IE+E+++ L+ HP
Sbjct: 3   FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHP 62

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  LY +FQ   ++  + ++ P GEL   + K       E   RFYAAE+++ LEYLH 
Sbjct: 63  GIIKLYYTFQDEENLYFVLEYAPNGELLQYIRK--YGSLDEKCTRFYAAEILLALEYLHS 120

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
            GII+RDLKPENILL KD H+ +TDF  + +  
Sbjct: 121 KGIIHRDLKPENILLDKDMHIKITDFGTAKVLD 153

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score =  155 bits (395), Expect = 3e-43
 Identities = 65/149 (43%), Positives = 97/149 (65%), Gaps = 2/149 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ IK +G G  G V LV  +  G++YAMK + KS M+ RN++     ER+I++  D P+
Sbjct: 3   FEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPW 62

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY SFQ   H+ L+ ++ PGG+L  LL +    +F E++ARFY AE+V+ L+ +H L
Sbjct: 63  IVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIR--KDVFPEETARFYIAELVLALDSVHKL 120

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSF 456
           G I+RD+KP+NIL+  DGH+ L DF L  
Sbjct: 121 GFIHRDIKPDNILIDADGHIKLADFGLCK 149

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  145 bits (369), Expect = 2e-40
 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ ++ LG G  G+V+  + +G G++ A+K ++K       K   A  E  I+  L HP 
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSE-KSKKDQTARREIRILRRLSHPN 59

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L  +F+   H+ L+ ++C GG+LF  L +       ED A+  A +++ GLEYLH  
Sbjct: 60  IVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRG--GPLSEDEAKKIALQILRGLEYLHSN 117

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
           GII+RDLKPENILL ++G V + DF L+            
Sbjct: 118 GIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTT 157

Length = 260

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  145 bits (367), Expect = 3e-40
 Identities = 57/139 (41%), Positives = 87/139 (62%), Gaps = 2/139 (1%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V LV+++     +A+K ++K  ++   +      E+EI+   +HPF+  LY 
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYR 60

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           +F+   +I ++ ++C GGEL+ +L  + +  F E +ARFY A VV+  EYLH  GIIYRD
Sbjct: 61  TFKDKKYIYMLMEYCLGGELWTILRDRGL--FDEYTARFYIACVVLAFEYLHNRGIIYRD 118

Query: 434 LKPENILLQKDGHVVLTDF 452
           LKPEN+LL  +G+V L DF
Sbjct: 119 LKPENLLLDSNGYVKLVDF 137

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score =  145 bits (367), Expect = 1e-39
 Identities = 73/148 (49%), Positives = 104/148 (70%), Gaps = 6/148 (4%)

Query: 311 IKPLGCGDTGSVHLV-ELQG--AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +K LG G  G V LV ++ G  AG+LYAMK ++K+ +  R++V R  +ER+I++ ++HPF
Sbjct: 1   LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRV-RTKMERDILAEVNHPF 59

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L+ +FQT   + LI DF  GG+LF  L K+ M  F E+  +FY AE+ + L++LH L
Sbjct: 60  IVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVM--FTEEDVKFYLAELALALDHLHSL 117

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GIIYRDLKPENILL ++GH+ LTDF LS
Sbjct: 118 GIIYRDLKPENILLDEEGHIKLTDFGLS 145

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  142 bits (361), Expect = 3e-38
 Identities = 68/180 (37%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
             F+ IK +G G  G V LV+ +  G +YAMK + KS ML + +V     ER+I++  D+
Sbjct: 1   DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADN 60

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P++  LY SFQ   ++ LI ++ PGG++  LL K+    F E+  RFY AE ++ ++ +H
Sbjct: 61  PWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIH 118

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
            LG I+RD+KP+N+LL   GH+ L+DF L     C       +H   FY I+   L   F
Sbjct: 119 KLGYIHRDIKPDNLLLDAKGHIKLSDFGL-----CTG--LKKSHRTEFYRILSHALPSNF 171

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score =  142 bits (360), Expect = 4e-38
 Identities = 62/148 (41%), Positives = 92/148 (62%), Gaps = 2/148 (1%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            F  IK +G G  G V LV       LYAMK + K+ +L RN+      ER+I++  D+ 
Sbjct: 2   MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNE 61

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           ++  LY SFQ   ++  + D+ PGG++ +LL +  + IF ED ARFY AE+   +E +H 
Sbjct: 62  WVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIR--LGIFEEDLARFYIAELTCAIESVHK 119

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDL 454
           +G I+RD+KP+NIL+ +DGH+ LTDF L
Sbjct: 120 MGFIHRDIKPDNILIDRDGHIKLTDFGL 147

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score =  140 bits (354), Expect = 4e-38
 Identities = 71/153 (46%), Positives = 98/153 (64%), Gaps = 7/153 (4%)

Query: 308 FKPIKPLGCGDTGSVHLVELQG---AGELYAMKAMEKSVMLNRNKV-HRACIEREIMSLL 363
           F+ ++ LG G  G V LV   G   AG+LYAMK ++K+ ++ + K       ER+++  +
Sbjct: 2   FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAV 61

Query: 364 DH-PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
              PFL TL+ +FQT T + LI D+  GGELF  L ++  + F E   R Y AE+V+ L+
Sbjct: 62  RRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALD 119

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +LH LGIIYRD+K ENILL  +GHVVLTDF LS
Sbjct: 120 HLHQLGIIYRDIKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score =  139 bits (352), Expect = 2e-37
 Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 7/162 (4%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K LG G  G V LV  +  G+ YAMK ++K V++ +++V     E  ++    HPFL  L
Sbjct: 1   KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTAL 60

Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
             SFQT   +C + ++  GGELF  L ++  ++F ED ARFY AE+V  L YLH   ++Y
Sbjct: 61  KYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHSCDVVY 118

Query: 432 RDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           RDLK EN++L KDGH+ +TDF L     CK  +   A +  F
Sbjct: 119 RDLKLENLMLDKDGHIKITDFGL-----CKEGISDGATMKTF 155

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score =  139 bits (351), Expect = 2e-37
 Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 8/163 (4%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPT 370
           K LG G  G V L EL+G  ELYA+K ++K V+L  + V     E+ +++L   HPFL  
Sbjct: 1   KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQ 60

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L++ FQT   +  + ++  GG+L  +   Q    F E  ARFYAAE+V+GL++LH  GII
Sbjct: 61  LHSCFQTKDRLFFVMEYVNGGDL--MFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGII 118

Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           YRDLK +N+LL  +GH+ + DF +     CK  +      + F
Sbjct: 119 YRDLKLDNVLLDSEGHIKIADFGM-----CKEGILGGVTTSTF 156

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score =  135 bits (343), Expect = 9e-37
 Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 2/151 (1%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
           HF+ ++ +G G  G V +V+ +   +++AMK M K   + +  V     ER I+  L+HP
Sbjct: 1   HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHP 60

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           FL  L+ SFQ   ++ L+ D   GG+L   L ++    F E+  +F+  E+V+ LEYLH 
Sbjct: 61  FLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHS 118

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFM 457
            GII+RD+KP+NILL + GHV +TDF+++  
Sbjct: 119 KGIIHRDIKPDNILLDEQGHVHITDFNIATK 149

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score =  136 bits (345), Expect = 2e-36
 Identities = 68/151 (45%), Positives = 90/151 (59%), Gaps = 8/151 (5%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPT 370
           K +G G  G V L + +  G+ YA+K ++K  +L + +      ER ++   + HPFL  
Sbjct: 1   KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVG 60

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+ SFQT+  +  + D+  GGELF  L ++  + F E  ARFYAAE+   L YLH L II
Sbjct: 61  LHYSFQTADKLYFVLDYVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSLNII 118

Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTSCK 461
           YRDLKPENILL   GHVVLTDF L     CK
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGL-----CK 144

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score =  136 bits (344), Expect = 3e-36
 Identities = 64/162 (39%), Positives = 93/162 (57%), Gaps = 11/162 (6%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER---EIMSLLD 364
           F+ +  LG G  G V L E +  GELYA+KA++K  ++ R++V     E+   E  +   
Sbjct: 1   FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSER 60

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HPFL  L+A FQT  H+C + ++  GG+L   +      +F E  A FYAA VV+GL+YL
Sbjct: 61  HPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYL 117

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           H   I+YRDLK +N+LL  +G V + DF L     CK  + +
Sbjct: 118 HENKIVYRDLKLDNLLLDTEGFVKIADFGL-----CKEGMGF 154

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  137 bits (346), Expect = 4e-36
 Identities = 65/167 (38%), Positives = 102/167 (61%), Gaps = 9/167 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  +K +G G  G V LV+ +  G++YAMK + KS M  ++++     ER++++  D P+
Sbjct: 3   FHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPW 62

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           + +LY SFQ + ++ LI +F PGG+L  +L K     F ED  RFY AE V+ +E +H L
Sbjct: 63  VVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIK--YDTFSEDVTRFYMAECVLAIEAVHKL 120

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           G I+RD+KP+NIL+ + GH+ L+DF LS         F+  H + +Y
Sbjct: 121 GFIHRDIKPDNILIDRGGHIKLSDFGLS-------TGFHKQHDSAYY 160

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score =  134 bits (339), Expect = 1e-35
 Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 15/161 (9%)

Query: 311 IKPLGCGDTGSVHLVE-LQGA--GELYAMKAMEKSVMLNRNK--VH-RACIEREIMSLLD 364
           +K LG G  G V  V  + GA  G+++AMK ++K+ ++   K   H +A  ER I+  + 
Sbjct: 1   LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKA--ERNILEAVK 58

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HPF+  L  +FQT   + LI ++  GGELF  L+++   IF ED+A FY +E+ + LE+L
Sbjct: 59  HPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHL 116

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
           H  GIIYRDLKPENILL   GHV LTDF L     CK  + 
Sbjct: 117 HQQGIIYRDLKPENILLDAQGHVKLTDFGL-----CKESIH 152

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score =  134 bits (338), Expect = 1e-35
 Identities = 67/163 (41%), Positives = 98/163 (60%), Gaps = 8/163 (4%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL-LDHPFLPT 370
           K LG G  G V L EL+G  E +A+KA++K V+L  + V    +ER +++L  +HPFL  
Sbjct: 1   KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTH 60

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+ +FQT  H+  + ++  GG+L  +   Q    F E  ARFYAAE++ GL++LH  GII
Sbjct: 61  LFCTFQTKEHLFFVMEYLNGGDL--MFHIQSSGRFDEARARFYAAEIICGLQFLHKKGII 118

Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           YRDLK +N+LL KDGH+ + DF +     CK  +      + F
Sbjct: 119 YRDLKLDNVLLDKDGHIKIADFGM-----CKENMNGEGKASTF 156

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score =  133 bits (336), Expect = 2e-35
 Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 2/145 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
            + IK +G G  G VHLV  + +   YA+K M    ++   +      E+ ++  + HPF
Sbjct: 3   LERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPF 62

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L+ +      + ++ ++ PGGELF+ L  +    F   +  FYA+E+V  LEYLH  
Sbjct: 63  IIRLFWTEHDQRFLYMLMEYVPGGELFSYL--RNSGRFSNSTGLFYASEIVCALEYLHSK 120

Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
            I+YRDLKPENILL K+GH+ LTDF
Sbjct: 121 EIVYRDLKPENILLDKEGHIKLTDF 145

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score =  133 bits (337), Expect = 2e-35
 Identities = 71/165 (43%), Positives = 102/165 (61%), Gaps = 9/165 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQG---AGELYAMKAMEKSVMLNRNK-VHRACIEREIMSLL 363
           F+ +K LG G  G V LV        G+LYAMK ++K+ ++ + K V     ER ++  +
Sbjct: 2   FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHV 61

Query: 364 -DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
              PFL TL+ +FQT   + LI D+  GGE+F  L ++    F ED  RFY+ E+++ LE
Sbjct: 62  RQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQR--DNFSEDEVRFYSGEIILALE 119

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS--FMTSCKPQVF 465
           +LH LGI+YRD+K ENILL  +GHVVLTDF LS  F++  K + +
Sbjct: 120 HLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTY 164

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score =  132 bits (334), Expect = 7e-35
 Identities = 55/139 (39%), Positives = 92/139 (66%), Gaps = 1/139 (0%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  G V +V  +  G++YAMK M+KSV+L +  V     ER+I+S+ + P++P L  
Sbjct: 9   VGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQY 68

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           +FQ   ++ L+ ++ PGG+L +LL++     F ED A+FY AE+V+ +  +H +G ++RD
Sbjct: 69  AFQDKDNLYLVMEYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVHQMGYVHRD 127

Query: 434 LKPENILLQKDGHVVLTDF 452
           +KPEN+L+ + GH+ L DF
Sbjct: 128 IKPENVLIDRTGHIKLADF 146

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  128 bits (324), Expect = 1e-34
 Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 4/143 (2%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G+V+L   +  G+  A+K ++K    + + +     E EI+  L+HP +  LY 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKE--DSSSLLEELLREIEILKKLNHPNIVKLYG 58

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+   H+ L+ ++C GG L  LL +       ED       +++ GLEYLH  GII+RD
Sbjct: 59  VFEDENHLYLVMEYCEGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSNGIIHRD 117

Query: 434 LKPENILLQKD-GHVVLTDFDLS 455
           LKPENILL  D G V L DF LS
Sbjct: 118 LKPENILLDSDNGKVKLADFGLS 140

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score =  131 bits (331), Expect = 2e-34
 Identities = 61/143 (42%), Positives = 88/143 (61%), Gaps = 2/143 (1%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++    HPFL  L
Sbjct: 1   KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTAL 60

Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
             +FQT   +C + ++  GGELF  L ++  ++F E+ ARFY AE+V  LEYLH   ++Y
Sbjct: 61  KYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVY 118

Query: 432 RDLKPENILLQKDGHVVLTDFDL 454
           RD+K EN++L KDGH+ +TDF L
Sbjct: 119 RDIKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score =  129 bits (326), Expect = 2e-34
 Identities = 59/156 (37%), Positives = 96/156 (61%), Gaps = 3/156 (1%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-MSLLDHPFLP 369
           +KP+  G  GSV+L + +  G+ +A+K ++KS M+ +N+V     ER I M   + P++ 
Sbjct: 1   LKPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVA 60

Query: 370 TLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGI 429
            LY SFQ+  ++ L+ ++  GG+  +L+  + +    ED A+ Y AEVV+G+E LH  GI
Sbjct: 61  KLYYSFQSKDYLYLVMEYLNGGDCASLI--KTLGGLPEDWAKQYIAEVVLGVEDLHQRGI 118

Query: 430 IYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
           I+RD+KPEN+L+ + GH+ LTDF LS       +  
Sbjct: 119 IHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFV 154

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score =  129 bits (327), Expect = 5e-34
 Identities = 57/150 (38%), Positives = 97/150 (64%), Gaps = 2/150 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ IK +  G  G+V+LV  +   + +AMK + K  ++ RN++ +  +ER+I++  ++PF
Sbjct: 3   FETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPF 62

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           + +++ SF+T  H+C++ ++  GG+   LL  + +     D AR Y AE V+ LEYLH  
Sbjct: 63  VVSMFCSFETKRHLCMVMEYVEGGDCATLL--KNIGALPVDMARMYFAETVLALEYLHNY 120

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFM 457
           GI++RDLKP+N+L+   GH+ LTDF LS +
Sbjct: 121 GIVHRDLKPDNLLITSMGHIKLTDFGLSKI 150

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score =  130 bits (327), Expect = 7e-34
 Identities = 67/163 (41%), Positives = 92/163 (56%), Gaps = 10/163 (6%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM---SLLDHPFLPT 370
           +G G  G V+ V  +    +YAMK + K  ++ + +V     ER I+    L + PF+  
Sbjct: 1   IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVG 60

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L  SFQT + + L+TD+  GGELF  L K+    F ED A+FY AE+V+ LE+LH   I+
Sbjct: 61  LKFSFQTDSDLYLVTDYMSGGELFWHLQKEGR--FSEDRAKFYIAELVLALEHLHKYDIV 118

Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           YRDLKPENILL   GH+ L DF LS     K  +  +   N F
Sbjct: 119 YRDLKPENILLDATGHIALCDFGLS-----KANLTDNKTTNTF 156

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score =  129 bits (326), Expect = 1e-33
 Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 15/169 (8%)

Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           K D SSW              L  F+  + LG G  G V + + +G GE YA+K ++K  
Sbjct: 9   KPDTSSW-------------KLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKRE 55

Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
           +L   +V     E+ I+  L HPF+  +  SFQ    +  + +F  GGELF  L K    
Sbjct: 56  ILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAGR- 114

Query: 404 IFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
            F  D A+FY AE+V+  EYLH   IIYRDLKPEN+LL   GHV +TDF
Sbjct: 115 -FPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDF 162

Length = 329

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score =  129 bits (325), Expect = 2e-33
 Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 2/149 (1%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            F+ +  +G G  G V L + +  GE+ A+K M+KS++   N+V     ER+I++     
Sbjct: 2   DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSE 61

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +L  L  +FQ   ++ L  ++ PGG+   LL+   + +  ED ARFY AE+   ++ LH 
Sbjct: 62  WLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNN--LGVLSEDHARFYMAEMFEAVDALHE 119

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           LG I+RDLKPEN L+   GH+ LTDF LS
Sbjct: 120 LGYIHRDLKPENFLIDASGHIKLTDFGLS 148

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score =  127 bits (321), Expect = 3e-33
 Identities = 67/144 (46%), Positives = 88/144 (61%), Gaps = 3/144 (2%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPT 370
           K +G G  G V L + +  G  YA+K ++K  +L + + +    ER ++   L HPFL  
Sbjct: 1   KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVG 60

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+ SFQT+  +  + D+  GGELF  L ++  + F E  ARFYAAEV   + YLH L II
Sbjct: 61  LHYSFQTAEKLYFVLDYVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSLNII 118

Query: 431 YRDLKPENILLQKDGHVVLTDFDL 454
           YRDLKPENILL   GHVVLTDF L
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score =  127 bits (320), Expect = 6e-33
 Identities = 63/143 (44%), Positives = 91/143 (63%), Gaps = 2/143 (1%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K LG G  G V LV  + +G+ YAMK ++K V++ +++V     E  ++    HPFL +L
Sbjct: 1   KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSL 60

Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
             SFQT   +C + ++  GGELF  L ++  ++F ED  RFY AE+V  L+YLH   I+Y
Sbjct: 61  KYSFQTKDRLCFVMEYVNGGELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLHSGKIVY 118

Query: 432 RDLKPENILLQKDGHVVLTDFDL 454
           RDLK EN++L KDGH+ +TDF L
Sbjct: 119 RDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score =  127 bits (319), Expect = 9e-33
 Identities = 67/144 (46%), Positives = 90/144 (62%), Gaps = 3/144 (2%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPT 370
           K +G G  G V L + +  G+ YA+K ++K ++LNR +      ER ++   + HPFL  
Sbjct: 1   KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVG 60

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+ SFQT+  +  + DF  GGELF  L ++  + F E  ARFYAAE+   L YLH + I+
Sbjct: 61  LHYSFQTTEKLYFVLDFVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSINIV 118

Query: 431 YRDLKPENILLQKDGHVVLTDFDL 454
           YRDLKPENILL   GHVVLTDF L
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score =  125 bits (316), Expect = 2e-32
 Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 10/156 (6%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPT 370
           K LG G  G V L EL+G GE +A+KA++K V+L  + V    +E+ +++L  ++PFL  
Sbjct: 1   KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTH 60

Query: 371 LYASFQTSTHICLITDFCPGGEL-FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGI 429
           LY +FQT  H+  + +F  GG+L F + DK    ++R   A FYAAE+V GL++LH  GI
Sbjct: 61  LYCTFQTKEHLFFVMEFLNGGDLMFHIQDKGRFDLYR---ATFYAAEIVCGLQFLHSKGI 117

Query: 430 IYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
           IYRDLK +N++L +DGH+ + DF +     CK  VF
Sbjct: 118 IYRDLKLDNVMLDRDGHIKIADFGM-----CKENVF 148

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score =  125 bits (314), Expect = 2e-32
 Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 7/154 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLV-ELQG--AGELYAMKAMEKSVMLNRNKV-HRACIEREIMS- 361
           +F+ +K LG G  G V LV ++ G  +G+LYAMK ++K+ ++ + K       ER+++  
Sbjct: 1   NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 60

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           +   PFL TL+ +FQT T + LI D+  GGELF  L ++    F+E   + Y+ E+V+ L
Sbjct: 61  IRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRER--FKEQEVQIYSGEIVLAL 118

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E+LH LGIIYRD+K ENILL  +GHVVLTDF LS
Sbjct: 119 EHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score =  125 bits (315), Expect = 2e-32
 Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 8/163 (4%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPT 370
           K LG G  G V L EL+G  + +A+KA++K V+L  + V    +E+ ++SL  +HPFL  
Sbjct: 1   KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTH 60

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY +FQT  ++  + ++  GG+L  +   Q    F    A FYAAE++ GL++LH  GI+
Sbjct: 61  LYCTFQTKENLFFVMEYLNGGDL--MFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIV 118

Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           YRDLK +NILL  DGH+ + DF +     CK  +   A    F
Sbjct: 119 YRDLKLDNILLDTDGHIKIADFGM-----CKENMLGDAKTCTF 156

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score =  130 bits (328), Expect = 3e-32
 Identities = 60/151 (39%), Positives = 97/151 (64%), Gaps = 2/151 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  +KP+  G  G V+L   +   +LYA+K ++K+ M+N+N VH+   ER+ ++L   PF
Sbjct: 6   FVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPF 65

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY S Q++ ++ L+ ++  GG++ +LL       F E+ A  Y +EV + L+YLH  
Sbjct: 66  IVHLYYSLQSANNVYLVMEYLIGGDVKSLL--HIYGYFDEEMAVKYISEVALALDYLHRH 123

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           GII+RDLKP+N+L+  +GH+ LTDF LS +T
Sbjct: 124 GIIHRDLKPDNMLISNEGHIKLTDFGLSKVT 154

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score =  123 bits (311), Expect = 9e-32
 Identities = 61/142 (42%), Positives = 85/142 (59%), Gaps = 3/142 (2%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL-LDHPFLPT 370
           K LG G  G V L EL+G  E+YA+K ++K V+L  + V     E+ I++L   HPFL  
Sbjct: 1   KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTA 60

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  FQT   +  + ++  GG+L  +   Q  + F E  +RFYAAEV + L +LH  G+I
Sbjct: 61  LHCCFQTKDRLFFVMEYVNGGDL--MFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVI 118

Query: 431 YRDLKPENILLQKDGHVVLTDF 452
           YRDLK +NILL  +GH  L DF
Sbjct: 119 YRDLKLDNILLDAEGHCKLADF 140

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score =  124 bits (312), Expect = 2e-31
 Identities = 63/147 (42%), Positives = 92/147 (62%), Gaps = 2/147 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  IK LG G  G V L        LYAMK + K  +LNRN+V     ER+I++  D+ +
Sbjct: 3   FVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEW 62

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY SFQ   ++  + D+ PGG++ +LL +  M++F E  ARFY AE+ + +E +H +
Sbjct: 63  VVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIR--MEVFPEVLARFYIAELTLAIESVHKM 120

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDL 454
           G I+RD+KP+NIL+  DGH+ LTDF L
Sbjct: 121 GFIHRDIKPDNILIDLDGHIKLTDFGL 147

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score =  124 bits (312), Expect = 2e-31
 Identities = 64/147 (43%), Positives = 91/147 (61%), Gaps = 2/147 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  IK LG G  G V L        LYAMK + K  +L RN+V     ER+I++  D+ +
Sbjct: 3   FVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEW 62

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY SFQ   ++  + D+ PGG++ +LL +  M IF ED ARFY AE+   +E +H +
Sbjct: 63  VVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIR--MGIFPEDLARFYIAELTCAVESVHKM 120

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDL 454
           G I+RD+KP+NIL+ +DGH+ LTDF L
Sbjct: 121 GFIHRDIKPDNILIDRDGHIKLTDFGL 147

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score =  122 bits (308), Expect = 2e-31
 Identities = 63/144 (43%), Positives = 90/144 (62%), Gaps = 3/144 (2%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K LG G  G V LV+ +  G  YAMK ++K V++ +++V     E  ++    HPFL  L
Sbjct: 1   KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTAL 60

Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGII 430
             SFQT   +C + ++  GGELF  L ++  ++F ED ARFY AE+V  L+YLH    ++
Sbjct: 61  KYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVV 118

Query: 431 YRDLKPENILLQKDGHVVLTDFDL 454
           YRDLK EN++L KDGH+ +TDF L
Sbjct: 119 YRDLKLENLMLDKDGHIKITDFGL 142

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score =  121 bits (305), Expect = 3e-31
 Identities = 52/160 (32%), Positives = 85/160 (53%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V   +++  G++YA K ++K  +  R     A  E++I+  +   F+ +L  
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAY 60

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           +F+T   +CL+     GG+L   +       F E  A FYAA+++ GLE+LH   I+YRD
Sbjct: 61  AFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRD 120

Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           LKPEN+LL   G+V ++D  L+       ++   A   G+
Sbjct: 121 LKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGY 160

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score =  120 bits (302), Expect = 2e-30
 Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 8/159 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP- 366
           F  +  LG G  G V L E +G  ELYA+K ++K V++  + V    +E+ +++L   P 
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPP 61

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           FL  L++ FQT   +  + ++  GG+L  +   Q +  F+E  A FYAAE+ IGL +LH 
Sbjct: 62  FLTQLHSCFQTMDRLYFVMEYVNGGDL--MYHIQQVGKFKEPHAVFYAAEIAIGLFFLHS 119

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
            GIIYRDLK +N++L  +GH+ + DF +     CK  +F
Sbjct: 120 KGIIYRDLKLDNVMLDAEGHIKIADFGM-----CKENIF 153

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score =  118 bits (298), Expect = 5e-30
 Identities = 65/153 (42%), Positives = 88/153 (57%), Gaps = 8/153 (5%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLY 372
           LG G  G V L  L+ +G LYA+K ++K V+L  + V     E+ I+SL  +HPFL  LY
Sbjct: 3   LGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLY 62

Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYR 432
             FQT   +  + +F  GG+L  +   Q  + F E  ARFYAAE+   L +LH  GIIYR
Sbjct: 63  CCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYR 120

Query: 433 DLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
           DLK +N+LL  +GH  L DF +     CK  +F
Sbjct: 121 DLKLDNVLLDHEGHCKLADFGM-----CKEGIF 148

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional

 Score =  122 bits (307), Expect = 7e-30
 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 48/164 (29%)

Query: 81  VITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFML 140
           ++TDP  PDNPI+FA+ +FLE+T Y  EEI+G NC FL+  E                  
Sbjct: 44  IVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPE------------------ 85

Query: 141 YFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNL 200
                                   +D+ATV+++RDA+ E+REI  +++NY K G  FWN 
Sbjct: 86  ------------------------TDRATVAEVRDAIAERREIATEILNYRKDGSSFWNA 121

Query: 201 FHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAK 244
             + P+ +  G+L YF G QLD S      R R +E   +Q+ K
Sbjct: 122 LFVSPVYNDAGDLVYFFGSQLDVS------RRRDAEDALRQAQK 159

Length = 540

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score =  118 bits (297), Expect = 7e-30
 Identities = 63/144 (43%), Positives = 86/144 (59%), Gaps = 3/144 (2%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPT 370
           K +G G  G V L   +   + YA+K ++K  +L + +      ER ++   + HPFL  
Sbjct: 1   KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVG 60

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+ SFQT+  +  + D+  GGELF  L ++  + F E  ARFYAAE+   L YLH L I+
Sbjct: 61  LHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIV 118

Query: 431 YRDLKPENILLQKDGHVVLTDFDL 454
           YRDLKPENILL   GH+VLTDF L
Sbjct: 119 YRDLKPENILLDSQGHIVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|237427 PRK13559, PRK13559, hypothetical protein; Provisional

 Score =  119 bits (300), Expect = 8e-30
 Identities = 61/196 (31%), Positives = 86/196 (43%), Gaps = 45/196 (22%)

Query: 58  ERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSF 117
            R+     G      +E+      ITDP  PD PI+ A+ +FL+LT Y  EE++GRNC F
Sbjct: 34  PRDFRGASGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRF 93

Query: 118 LELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAV 177
           L+                                            ++D   V+KIR A+
Sbjct: 94  LQ------------------------------------------GAATDPIAVAKIRAAI 111

Query: 178 REQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEK 237
             +REI V+L+NY K G+ FWN  HL P+    G L YF G Q D +D       R  E 
Sbjct: 112 AAEREIVVELLNYRKDGEPFWNALHLGPVYGEDGRLLYFFGSQWDVTDIR---AVRALEA 168

Query: 238 TEQQSAKIVKATAENV 253
            E++ A+ V   ++NV
Sbjct: 169 HERRLAREVDHRSKNV 184

Length = 361

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score =  117 bits (294), Expect = 6e-29
 Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 5/161 (3%)

Query: 292 AIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH 351
           A +KIT    ++    F  IK +G G  G V LV  + + ++YAMK + K  M+ R+   
Sbjct: 31  AAEKITKL--RMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSA 88

Query: 352 RACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSAR 411
               ER+IM+  +  ++  L+ +FQ   ++ ++ ++ PGG+L  L+    +    E  AR
Sbjct: 89  FFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMSNYDIP---EKWAR 145

Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           FY AEVV+ L+ +H +G I+RD+KP+N+LL K GH+ L DF
Sbjct: 146 FYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADF 186

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score =  113 bits (285), Expect = 1e-28
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 7/153 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML--NRNKVHRACIEREIMSLLD 364
            ++ IK +G G  G V+LV  +  G+LY +K ++ S M    R        E +I+  L+
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALN---EVKILKKLN 57

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPM--KIFREDSARFYAAEVVIGLE 422
           HP +   Y SF+    +C++ ++  GG+L   + KQ    K F E+    +  ++ + L+
Sbjct: 58  HPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALK 117

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YLH   I++RD+KP+NI L  +G V L DF +S
Sbjct: 118 YLHSRKILHRDIKPQNIFLTSNGLVKLGDFGIS 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score =  115 bits (288), Expect = 1e-28
 Identities = 57/148 (38%), Positives = 90/148 (60%), Gaps = 3/148 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP- 366
           F  +  LG G  G V L E +G  ELYA+K ++K V++  + V    +E+ +++L D P 
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPP 61

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           FL  L++ FQT   +  + ++  GG+L  +   Q +  F+E  A FYAAE+ +GL +LH 
Sbjct: 62  FLTQLHSCFQTVDRLYFVMEYVNGGDL--MYHIQQVGKFKEPQAVFYAAEISVGLFFLHR 119

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDL 454
            GIIYRDLK +N++L  +GH+ + DF +
Sbjct: 120 RGIIYRDLKLDNVMLDSEGHIKIADFGM 147

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score =  112 bits (281), Expect = 1e-27
 Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 2/141 (1%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  G V  V  +    +YA+K + K+ +++R++V     ER +++ ++ PF+  L  
Sbjct: 1   IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKF 60

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           SFQ+   + L+  F  GGELF  L ++    F    ARFY AE++  LE LH   +IYRD
Sbjct: 61  SFQSPEKLYLVLAFINGGELFHHLQREGR--FDLSRARFYTAELLCALENLHKFNVIYRD 118

Query: 434 LKPENILLQKDGHVVLTDFDL 454
           LKPENILL   GH+ L DF L
Sbjct: 119 LKPENILLDYQGHIALCDFGL 139

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score =  112 bits (282), Expect = 1e-27
 Identities = 57/147 (38%), Positives = 94/147 (63%), Gaps = 5/147 (3%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI--EREIMSLLDH 365
           F+ +K +G G  G V +V+++  G++YAMK + K  ML R +   AC   ER+++   D 
Sbjct: 3   FEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAET--ACFREERDVLVNGDR 60

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
            ++  L+ +FQ   ++ L+ D+  GG+L  LL K   ++  ED ARFY AE+V+ ++ +H
Sbjct: 61  RWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRL-PEDMARFYLAEMVLAIDSVH 119

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDF 452
            LG ++RD+KP+N+LL K+GH+ L DF
Sbjct: 120 QLGYVHRDIKPDNVLLDKNGHIRLADF 146

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score =  111 bits (280), Expect = 2e-27
 Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 6/174 (3%)

Query: 283 HKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQ-GAGELYAMKAMEK 341
           HK+ +S      K      K+    F  I+ LG G  G V L   +       A+K  EK
Sbjct: 10  HKKKDS---DSTKEPKRKNKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEK 66

Query: 342 SVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQP 401
           S ++ + +V     ER+I++ ++HPF   LY SF+  +++ L+ +F  GGE F  L +  
Sbjct: 67  SKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRN- 125

Query: 402 MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            K F  D   FYAA++V+  EYL  L I+YRDLKPEN+LL KDG + +TDF  +
Sbjct: 126 -KRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFA 178

Length = 340

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score =  111 bits (278), Expect = 6e-27
 Identities = 57/147 (38%), Positives = 91/147 (61%), Gaps = 2/147 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ +K +G G  G V LV+ +  G +YAMK + K+ ML + +V     ER+I+   D  +
Sbjct: 3   FESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAW 62

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  ++ SFQ   ++ LI +F PGG++  LL K+      E++ +FY AE V+ ++ +H L
Sbjct: 63  VVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQL 120

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDL 454
           G I+RD+KP+N+LL   GHV L+DF L
Sbjct: 121 GFIHRDIKPDNLLLDAKGHVKLSDFGL 147

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score =  110 bits (277), Expect = 9e-27
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ +K +G G  G V LV+ +  G +YAMK + K+ ML + +V     ER+I+   D  +
Sbjct: 3   FESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLW 62

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  ++ SFQ   ++ LI +F PGG++  LL K+      E+  +FY AE V+ ++ +H L
Sbjct: 63  VVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQL 120

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
           G I+RD+KP+N+LL   GHV L+DF L   T  K      AH   FY  +   L   FT+
Sbjct: 121 GFIHRDIKPDNLLLDSKGHVKLSDFGLC--TGLK-----KAHRTEFYRNLNHSLPSDFTF 173

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score =  108 bits (271), Expect = 3e-26
 Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 3/148 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP- 366
           F  +  LG G  G V L E +G  ELYA+K ++K V++  + V    +E+ +++L   P 
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPP 61

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           FL  L++ FQT   +  + ++  GG+L  +   Q +  F+E  A FYAAE+ IGL +LH 
Sbjct: 62  FLTQLHSCFQTMDRLYFVMEYVNGGDL--MYQIQQVGRFKEPHAVFYAAEIAIGLFFLHS 119

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDL 454
            GIIYRDLK +N++L  +GH+ + DF +
Sbjct: 120 KGIIYRDLKLDNVMLDSEGHIKIADFGM 147

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score =  106 bits (268), Expect = 3e-26
 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 9/152 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDH 365
           +   + LG G  GSV+L   +  GEL A+K++E S     ++     +EREI  +S L H
Sbjct: 2   WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELS---GDSEEELEALEREIRILSSLQH 58

Query: 366 PFLPTLYASFQTST--HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           P +   Y S +      + +  ++  GG L +LL K       E   R Y  +++ GL Y
Sbjct: 59  PNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKF--GKLPEPVIRKYTRQILEGLAY 116

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           LH  GI++RD+K  NIL+  DG V L DF  +
Sbjct: 117 LHSNGIVHRDIKGANILVDSDGVVKLADFGCA 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score =  107 bits (267), Expect = 2e-25
 Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            ++ ++ LG G  G V+L   +   +L A+K + K +     +V R   E +I++ L+HP
Sbjct: 1   SYRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHP 57

Query: 367 -FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI-FREDSARFYAAEVVIGLEYL 424
             +  LY  FQ    + L+ ++  GG L  LL K   K    E  A F  A+++  LEYL
Sbjct: 58  PNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYL 117

Query: 425 HCLGIIYRDLKPENILLQKDGH-VVLTDFDLS 455
           H  GII+RD+KPENILL +DG  V L DF L+
Sbjct: 118 HSKGIIHRDIKPENILLDRDGRVVKLIDFGLA 149

Length = 384

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score =  107 bits (268), Expect = 2e-25
 Identities = 59/180 (32%), Positives = 99/180 (55%), Gaps = 19/180 (10%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K +G G  G V LV  + + ++YAMK + K  M+ R+       ER+IM+  + P++  
Sbjct: 48  VKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQ 107

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+ +FQ   ++ ++ ++ PGG+L  L+    +    E  A+FY AEVV+ L+ +H +G+I
Sbjct: 108 LFCAFQDDKYLYMVMEYMPGGDLVNLMSNYDVP---EKWAKFYTAEVVLALDAIHSMGLI 164

Query: 431 YRDLKPENILLQKDGHVVLTDF------DLSFMTSC----------KPQVFYHAHVNGFY 474
           +RD+KP+N+LL K GH+ L DF      D + M  C           P+V      +G+Y
Sbjct: 165 HRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYY 224

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score =  104 bits (261), Expect = 8e-25
 Identities = 52/140 (37%), Positives = 85/140 (60%), Gaps = 3/140 (2%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPTLY 372
           +G G    V LVEL+    +YAMK ++K ++ +   +     E+ +  +  +HPFL  L+
Sbjct: 3   IGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLH 62

Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYR 432
           + FQT + +  + +F  GG+L   + +Q  +   E+ ARFY+AE+ + L +LH  GIIYR
Sbjct: 63  SCFQTESRLFFVIEFVSGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLHERGIIYR 120

Query: 433 DLKPENILLQKDGHVVLTDF 452
           DLK +N+LL  +GH+ LTD+
Sbjct: 121 DLKLDNVLLDAEGHIKLTDY 140

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score =  102 bits (256), Expect = 1e-24
 Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 6/146 (4%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V   +++  G+LYA K + K  +  R     A +E+ I++ +   F+ +L  
Sbjct: 1   LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAY 60

Query: 374 SFQTSTHICLITDFCPGGEL----FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGI 429
           +FQT T +CL+     GG+L    + + ++ P   F E  A FY A+++ GLE+LH   I
Sbjct: 61  AFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPG--FPEPRACFYTAQIISGLEHLHQRRI 118

Query: 430 IYRDLKPENILLQKDGHVVLTDFDLS 455
           IYRDLKPEN+LL  DG+V ++D  L+
Sbjct: 119 IYRDLKPENVLLDNDGNVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score =  103 bits (259), Expect = 3e-24
 Identities = 53/145 (36%), Positives = 88/145 (60%), Gaps = 3/145 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ +K +G G  G V LV  +   ++YAMK + K  M+ R+       ER+IM+  + P+
Sbjct: 45  YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 104

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L+ +FQ   ++ ++ ++ PGG+L  L+    +    E  ARFY AEVV+ L+ +H +
Sbjct: 105 VVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVP---EKWARFYTAEVVLALDAIHSM 161

Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           G I+RD+KP+N+LL K GH+ L DF
Sbjct: 162 GFIHRDVKPDNMLLDKSGHLKLADF 186

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score =  101 bits (252), Expect = 4e-24
 Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 5/145 (3%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFLPT 370
           +G G  G V+       G++YAMK ++K  +  +     A  ER ++SL+   D PF+  
Sbjct: 2   IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           +  +F T   +  I D   GG+L   L +    +F E   RFYAAE+++GLE++H   ++
Sbjct: 62  MSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEAEMRFYAAEIILGLEHMHNRFVV 119

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           YRDLKP NILL + GHV ++D  L+
Sbjct: 120 YRDLKPANILLDEHGHVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score =  102 bits (255), Expect = 5e-24
 Identities = 57/147 (38%), Positives = 94/147 (63%), Gaps = 5/147 (3%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI--EREIMSLLDH 365
           F+ +K +G G  G V +V+L+ A +++AMK + K  ML R +   AC   ER+++   D+
Sbjct: 3   FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAET--ACFREERDVLVNGDN 60

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
            ++ TL+ +FQ   ++ L+ D+  GG+L  LL K   ++  ED ARFY AE+VI ++ +H
Sbjct: 61  QWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRL-PEDMARFYLAEMVIAIDSVH 119

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDF 452
            L  ++RD+KP+NIL+  +GH+ L DF
Sbjct: 120 QLHYVHRDIKPDNILMDMNGHIRLADF 146

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score =  100 bits (251), Expect = 5e-24
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            F+ ++ +G G  G V+    +  G+  A+K ++      + K+     E +I+    HP
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIIN---EIQILKKCKHP 57

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +   Y S+     + ++ +FC GG L  LL      +     A +   E++ GLEYLH 
Sbjct: 58  NIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIA-YVCKELLKGLEYLHS 116

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            GII+RD+K  NILL  DG V L DF LS
Sbjct: 117 NGIIHRDIKAANILLTSDGEVKLIDFGLS 145

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score =  100 bits (251), Expect = 8e-24
 Identities = 52/148 (35%), Positives = 82/148 (55%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+  + LG G  G V   +++  G++YA K +EK  +  R     A  E++I+  ++  F
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQF 61

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L  +++T   +CL+     GG+L   +       F E+ A FYAAE++ GLE LH  
Sbjct: 62  VVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE 121

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
             +YRDLKPENILL   GH+ ++D  L+
Sbjct: 122 NTVYRDLKPENILLDDYGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score =  100 bits (251), Expect = 1e-23
 Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 5/147 (3%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI--EREIMSLLDH 365
           F+ IK +G G  G V +V+++    +YAMK + K  ML R +   AC   ER ++   D 
Sbjct: 3   FEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAET--ACFREERNVLVNGDC 60

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
            ++ TL+ +FQ   ++ L+ D+  GG+L  LL K   ++  ED ARFY AE+V+ +  +H
Sbjct: 61  QWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRL-PEDMARFYIAEMVLAIHSIH 119

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDF 452
            L  ++RD+KP+N+LL  +GH+ L DF
Sbjct: 120 QLHYVHRDIKPDNVLLDMNGHIRLADF 146

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 99.5 bits (248), Expect = 2e-23
 Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 2/149 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+  + LG G  G V   +++  G++YA K +EK  +  R     A  E++I+  ++  F
Sbjct: 2   FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF 61

Query: 368 LPTLYASFQTSTHICLITDFCPGGEL-FALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           + +L  +++T   +CL+     GG+L F + +      F E+ A FYAAE+  GLE LH 
Sbjct: 62  VVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPG-FDEERAVFYAAEITCGLEDLHR 120

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             I+YRDLKPENILL   GH+ ++D  L+
Sbjct: 121 ERIVYRDLKPENILLDDYGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 99.7 bits (248), Expect = 3e-23
 Identities = 53/142 (37%), Positives = 86/142 (60%), Gaps = 3/142 (2%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLY 372
           +G G    V LV L+   ++YAMK ++K ++ +   +     E+ +      +PFL  L+
Sbjct: 3   IGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLH 62

Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYR 432
           + FQT++ + L+ ++  GG+L   + +Q  +   E+ ARFYAAE+ I L +LH  GIIYR
Sbjct: 63  SCFQTTSRLFLVIEYVNGGDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHERGIIYR 120

Query: 433 DLKPENILLQKDGHVVLTDFDL 454
           DLK +N+LL  DGH+ LTD+ +
Sbjct: 121 DLKLDNVLLDADGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 97.4 bits (242), Expect = 1e-22
 Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 5/145 (3%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFLPT 370
           +G G  G V+       G++YAMK ++K  +  +     A  ER ++SL+   D PF+  
Sbjct: 2   IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           +  +F T   +C I D   GG+L   L +    +F E   RFYA E+++GLE++H   ++
Sbjct: 62  MTYAFHTPDKLCFILDLMNGGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHNRFVV 119

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           YRDLKP NILL + GHV ++D  L+
Sbjct: 120 YRDLKPANILLDEHGHVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 98.2 bits (244), Expect = 1e-22
 Identities = 51/142 (35%), Positives = 84/142 (59%), Gaps = 3/142 (2%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLY 372
           +G G    V LV L+    +YAMK ++K ++ +   +     E+ +     +HPFL  L+
Sbjct: 3   IGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLH 62

Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYR 432
           + FQT + +  + ++  GG+L   + +Q  +   E+ ARFY+AE+ + L YLH  GIIYR
Sbjct: 63  SCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYR 120

Query: 433 DLKPENILLQKDGHVVLTDFDL 454
           DLK +N+LL  +GH+ LTD+ +
Sbjct: 121 DLKLDNVLLDSEGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 97.0 bits (241), Expect = 2e-22
 Identities = 53/148 (35%), Positives = 82/148 (55%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+  + LG G  G V   +++  G++YA K +EK  +  R     A  E++I+  ++  F
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRF 61

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           + +L  +++T   +CL+     GG+L   +       F E  A FYAAE+  GLE LH  
Sbjct: 62  VVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE 121

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
            I+YRDLKPENILL   GH+ ++D  L+
Sbjct: 122 RIVYRDLKPENILLDDHGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 94.2 bits (234), Expect = 1e-21
 Identities = 48/160 (30%), Positives = 87/160 (54%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V  V+++  G++YA K ++K  +  ++    A +E+EI+  ++ PF+  L  
Sbjct: 1   LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAY 60

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           +F++ TH+CL+     GG+L   +     +    +    Y+A++  G+ +LH + I+YRD
Sbjct: 61  AFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRD 120

Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           +KPEN+LL   G+  L+D  L+        +   A  NG+
Sbjct: 121 MKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGY 160

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 90.7 bits (226), Expect = 1e-20
 Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 9/152 (5%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-- 364
             + +K LG G +G V+ V  +  G++YA+K     + ++ ++  R  + RE+ +L    
Sbjct: 2   DLERVKVLGQGSSGVVYKVRHKPTGKIYALK----KIHVDGDEEFRKQLLRELKTLRSCE 57

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            P++   Y +F     I ++ ++  GG L  LL K       E    + A +++ GL+YL
Sbjct: 58  SPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYL 115

Query: 425 H-CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H    II+RD+KP N+L+   G V + DF +S
Sbjct: 116 HTKRHIIHRDIKPSNLLINSKGEVKIADFGIS 147

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 90.4 bits (224), Expect = 3e-20
 Identities = 52/148 (35%), Positives = 80/148 (54%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+  + LG G  G V   +++  G++YA K +EK  +  R     A  E+ I+  ++  F
Sbjct: 2   FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRF 61

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           + +L  +++T   +CL+     GG+L   +       F E  A FYAAE+  GLE L   
Sbjct: 62  VVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE 121

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
            I+YRDLKPENILL   GH+ ++D  L+
Sbjct: 122 RIVYRDLKPENILLDDRGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|237426 PRK13558, PRK13558, bacterio-opsin activator; Provisional

 Score = 91.4 bits (227), Expect = 2e-19
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 42/148 (28%)

Query: 81  VITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFML 140
            I D  +PD P+I+ +D+F  +T Y+ +E+LGRNC FL+  E T EE             
Sbjct: 162 TIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQ-GEDTNEE------------- 207

Query: 141 YFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNL 200
                                        V+++R+A+ E+R  +V+L NY K G  FWN 
Sbjct: 208 ----------------------------RVAELREAIDEERPTSVELRNYRKDGSTFWNQ 239

Query: 201 FHLQPMRDHKGELQYFIGVQLDGSDHVE 228
             + P+RD  G + +++G Q D ++  E
Sbjct: 240 VDIAPIRDEDGTVTHYVGFQTDVTERKE 267

Length = 665

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 85.6 bits (212), Expect = 8e-19
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 3/150 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK +K LG G  GSV+ V+     + YA+K ++   M ++ +   A  E  I++ ++HP 
Sbjct: 2   FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSM-SQKEREDAVNEIRILASVNHPN 60

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPM--KIFREDSARFYAAEVVIGLEYLH 425
           + +   +F     +C++ ++ P G+L   + K+    K+  E        +++ GL+ LH
Sbjct: 61  IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH 120

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I++RDLK  NILL  +  V + D  +S
Sbjct: 121 EQKILHRDLKSANILLVANDLVKIGDLGIS 150

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFLPTL 371
           +G G  G V+       GEL A+K  E  +  N  K  +  I  E  ++ LL HP L   
Sbjct: 8   IGGGTFGKVYTAVNLDTGELMAVK--EIRIQDNDPKTIKE-IADEMKVLELLKHPNLVKY 64

Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y        + +  ++C GG L  LL+    +I  E   R Y  +++ GL YLH  GI++
Sbjct: 65  YGVEVHREKVYIFMEYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYLHSHGIVH 122

Query: 432 RDLKPENILLQKDGHVVLTDF 452
           RD+KP NI L  +G + L DF
Sbjct: 123 RDIKPANIFLDHNGVIKLGDF 143

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI---EREI--MSLLDHPFL 368
           LG G  GSV+       G+ +A+K   +  + +  +  +  +   E+EI  +S L HP +
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVK---EVSLADDGQTGQEAVKQLEQEIALLSKLQHPNI 64

Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
                + +   ++ +  +  PGG L  LL K     F E   R Y  ++++GLEYLH   
Sbjct: 65  VQYLGTEREEDNLYIFLELVPGGSLAKLLKK--YGSFPEPVIRLYTRQILLGLEYLHDRN 122

Query: 429 IIYRDLKPENILLQKDGHVVLTDF-------DLSFMTSCKPQVFYHA 468
            ++RD+K  NIL+  +G V L DF       + SF  S K   ++ A
Sbjct: 123 TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMA 169

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLD 364
            ++ I+ +G G T  V+        E  A+K ++    L + +     + +E+  MS  +
Sbjct: 2   DYELIEVIGVGATAVVYAAICLPNNEKVAIKRID----LEKCQTSVDELRKEVQAMSQCN 57

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLD-KQPMKIFREDSARFYAAEVVIGLEY 423
           HP +   Y SF     + L+  +  GG L  ++    P     E        EV+ GLEY
Sbjct: 58  HPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEY 117

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           LH  G I+RD+K  NILL +DG V + DF +S
Sbjct: 118 LHSNGQIHRDIKAGNILLGEDGSVKIADFGVS 149

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|222120 pfam13426, PAS_9, PAS domain

 Score = 78.6 bits (194), Expect = 6e-18
 Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 45/146 (30%)

Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            ++ DP   D  I++A+D+ L L  YTREE+LG++   L                     
Sbjct: 1   ILVLDP---DGRIVYANDAALRLLGYTREELLGKSIRDLFGPG----------------- 40

Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                     D+  V+++R+A+R   E+ V+L    K G+ F  
Sbjct: 41  -------------------------DDEEAVARLREALRNGGEVEVELELRRKDGEPFPV 75

Query: 200 LFHLQPMRDHKGELQYFIGVQLDGSD 225
           L    P+RD  GE+   +G+  D ++
Sbjct: 76  LVSASPVRDEDGEVVGIVGILRDITE 101

Length = 101

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 82.2 bits (203), Expect = 1e-17
 Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 1/145 (0%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K +G G  G   LV+ +  G+ Y +K +  S M  + +   +  E  ++S + HP +  
Sbjct: 5   VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKER-EESRKEVAVLSNMKHPNIVQ 63

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
              SF+ + ++ ++ D+C GG+L+  ++ Q   +F ED    +  ++ + L+++H   I+
Sbjct: 64  YQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKIL 123

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RD+K +NI L KDG + L DF ++
Sbjct: 124 HRDIKSQNIFLTKDGTIKLGDFGIA 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-EREIMSLLDHPFLPTLY 372
           +G G  G V+       G+  A+K +    +       ++ + E +++  L HP +    
Sbjct: 8   IGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEA--LKSIMQEIDLLKNLKHPNIVKYI 65

Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYR 432
            S +TS  + +I ++   G L  ++  +    F E     Y  +V+ GL YLH  G+I+R
Sbjct: 66  GSIETSDSLYIILEYAENGSLRQII--KKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHR 123

Query: 433 DLKPENILLQKDGHVVLTDFDLS 455
           D+K  NIL  KDG V L DF ++
Sbjct: 124 DIKAANILTTKDGVVKLADFGVA 146

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            +K ++ +G G +G V+    +  G+  A+K M     L +        E  IM    HP
Sbjct: 20  LYKNLEKIGEGASGEVYKATDRATGKEVAIKKMR----LRKQNKELIINEILIMKDCKHP 75

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +   Y S+     + ++ ++  GG L  ++ +       E    +   EV+ GLEYLH 
Sbjct: 76  NIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHS 134

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDF 452
             +I+RD+K +NILL KDG V L DF
Sbjct: 135 QNVIHRDIKSDNILLSKDGSVKLADF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 80.4 bits (199), Expect = 6e-17
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 8/151 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL--DH 365
            + +  LG G++G V  V  +  G++ A+K    ++ L  N+  +  I RE+  L   + 
Sbjct: 3   LEYLGELGAGNSGVVSKVLHRPTGKIMAVK----TIRLEINEAIQKQILRELDILHKCNS 58

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P++   Y +F  +  I +  ++  GG L  +L K+      E      A  V+ GL YLH
Sbjct: 59  PYIVGFYGAFYNNGDISICMEYMDGGSLDKIL-KEVQGRIPERILGKIAVAVLKGLTYLH 117

Query: 426 -CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               II+RD+KP NIL+   G + L DF +S
Sbjct: 118 EKHKIIHRDVKPSNILVNSRGQIKLCDFGVS 148

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 79.6 bits (196), Expect = 9e-17
 Identities = 49/153 (32%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVM--LNRNKVHRACIEREIMSLLDHPFLPTL 371
           LG G  G+V+LV+ + A     +K +++  +  LN N+  +A  E +++S LDHP +   
Sbjct: 8   LGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKF 67

Query: 372 YASFQTSTHICLITDFCPGGELFALLD--KQPMKIFREDSARFYAAEVVIGLEYLHCLGI 429
           +ASF      C+IT++C G +L   L+  K   K   E+    +  ++++G+ Y+H   I
Sbjct: 68  HASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRI 127

Query: 430 IYRDLKPENILLQKDGHVVLTDFDLS--FMTSC 460
           ++RDLK +NI L+ +  + + DF +S   M SC
Sbjct: 128 LHRDLKAKNIFLKNN-LLKIGDFGVSRLLMGSC 159

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 78.3 bits (193), Expect = 3e-16
 Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 3/146 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ +  +G G  G V  V  +    +YAMK ++ S M NR +   A  E  +++ LD  +
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKM-NRREREEAIDEARVLAKLDSSY 60

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSA-RFYAAEVVIGLEYLHC 426
           +   Y SF     + ++ ++   G+L  LL  Q  +   ED   RF+  ++++GL +LH 
Sbjct: 61  IIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFF-IQILLGLAHLHS 119

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDF 452
             I++RD+K  N+ L    +V + D 
Sbjct: 120 KKILHRDIKSLNLFLDAYDNVKIGDL 145

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 77.9 bits (192), Expect = 5e-16
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 20/153 (13%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFLPTL 371
           LG G  GSV    L+  G ++A+K    ++  + N   +  I RE  I      P++   
Sbjct: 9   LGEGAGGSVTKCRLKNTGMIFALK----TITTDPNPDLQKQILRELEINKSCKSPYIVKY 64

Query: 372 YASF--QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF-------YAAEVVIGLE 422
           Y +F  ++S+ I +  ++C GG L ++  K      ++   R         A  V+ GL 
Sbjct: 65  YGAFLDESSSSIGIAMEYCEGGSLDSIYKK-----VKKRGGRIGEKVLGKIAESVLKGLS 119

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YLH   II+RD+KP NILL + G V L DF +S
Sbjct: 120 YLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVS 152

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 355 IEREI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
           I++EI  +S    P++   Y SF   + + +I ++C GG    LL         E    F
Sbjct: 46  IQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGK---LDETYIAF 102

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS---FMTSCKPQVF 465
              EV++GLEYLH  G I+RD+K  NILL ++G V L DF +S     T  K   F
Sbjct: 103 ILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTF 158

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 75.6 bits (186), Expect = 3e-15
 Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 8/148 (5%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAME-KSVMLNRNKVHRACIE---REIMSL--LDHPF 367
           +G G  GSV+L     +GEL A+K +E  SV  +     R+ ++   REI  L  L H  
Sbjct: 8   IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +     S   + H+ +  ++ PGG + ALL+      F E   R +  +++ GL YLH  
Sbjct: 68  IVQYLGSSLDADHLNIFLEYVPGGSVAALLNN--YGAFEETLVRNFVRQILKGLNYLHNR 125

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GII+RD+K  NIL+   G + ++DF +S
Sbjct: 126 GIIHRDIKGANILVDNKGGIKISDFGIS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 74.8 bits (184), Expect = 5e-15
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+  + +  G   A K ++     +  ++    +E +I+S   HP +  LY 
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIE---SEEELEDFMVEIDILSECKHPNIVGLYE 69

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           ++     + ++ +FC GG L +++ +   +   E   R+   +++  L +LH   +I+RD
Sbjct: 70  AYFYENKLWILIEFCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHSHKVIHRD 128

Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  NILL  DG V L DF +S
Sbjct: 129 LKAGNILLTLDGDVKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 73.7 bits (181), Expect = 8e-15
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 2/159 (1%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ I+ +G G  G VHL   +   +L  +K +    M  +++   A  E +++ LL HP 
Sbjct: 2   YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQM-TKDERLAAQNECQVLKLLSHPN 60

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +   Y +F     + ++ ++ PGG L   + K+   +  ED+   +  ++++ L ++H  
Sbjct: 61  IIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK 120

Query: 428 GIIYRDLKPENILLQKDGHVV-LTDFDLSFMTSCKPQVF 465
            I++RDLK +NILL K   VV + DF +S + S K + +
Sbjct: 121 LILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAY 159

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFLPT 370
           LG G  GSV+    +  G++ A+K     V+     +    I +EI S+L   D P++  
Sbjct: 11  LGEGSYGSVYKAIHKETGQVVAIK-----VVPVEEDLQE--IIKEI-SILKQCDSPYIVK 62

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
            Y S+  +T + ++ ++C  G +  ++ K   K   E+       + + GLEYLH    I
Sbjct: 63  YYGSYFKNTDLWIVMEYCGAGSVSDIM-KITNKTLTEEEIAAILYQTLKGLEYLHSNKKI 121

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RD+K  NILL ++G   L DF +S
Sbjct: 122 HRDIKAGNILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 8/151 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---D 364
           +K IK LG G  GSV+L   +  GEL A+K M+K               RE+ SL    +
Sbjct: 1   YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKF----YSWEECMNLREVKSLRKLNE 56

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L   F+ +  +  + ++  G  L+ L+  +  K F E   R    +++ GL ++
Sbjct: 57  HPNIVKLKEVFRENDELYFVFEYMEG-NLYQLMKDRKGKPFSESVIRSIIYQILQGLAHI 115

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H  G  +RDLKPEN+L+     V + DF L+
Sbjct: 116 HKHGFFHRDLKPENLLVSGPEVVKIADFGLA 146

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 72.8 bits (178), Expect = 3e-14
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           I  LG G  G V+  + +  G L A K +E     +  ++    +E EI++  +HP++  
Sbjct: 17  IGELGDGAFGKVYKAKNKETGALAAAKVIETK---SEEELEDYMVEIEILATCNHPYIVK 73

Query: 371 LYASFQTSTHICLITDFCPGGELFAL---LDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           L  +F     + ++ +FCPGG + A+   LD+       E   +    +++  L+YLH +
Sbjct: 74  LLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRG----LTEPQIQVICRQMLEALQYLHSM 129

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
            II+RDLK  N+LL  DG + L DF +S
Sbjct: 130 KIIHRDLKAGNVLLTLDGDIKLADFGVS 157

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 71.2 bits (174), Expect = 8e-14
 Identities = 41/166 (24%), Positives = 87/166 (52%), Gaps = 3/166 (1%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           ++ +G G  G   LV+   + + YAMK +      +  +  R   E  +++ + HP +  
Sbjct: 5   LRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRK--EAVLLAKMKHPNIVA 62

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
              SF+   H+ ++ ++C GG+L   +  Q  K+F ED+   +  ++ +G++++H   ++
Sbjct: 63  FKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVL 122

Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFI 476
           +RD+K +NI L ++G V L DF  + + +  P  +   +V   Y++
Sbjct: 123 HRDIKSKNIFLTQNGKVKLGDFGSARLLT-SPGAYACTYVGTPYYV 167

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 71.1 bits (174), Expect = 8e-14
 Identities = 43/148 (29%), Positives = 85/148 (57%), Gaps = 6/148 (4%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
           ++ IK +G G  G ++L + +   E   +K ++ + M  + K      ++E++ L  + H
Sbjct: 2   YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEK---EASKKEVILLAKMKH 58

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P + T +ASFQ +  + ++ ++C GG+L   +++Q   +F ED    +  ++ +GL+++H
Sbjct: 59  PNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIH 118

Query: 426 CLGIIYRDLKPENILLQKDGHVV-LTDF 452
              I++RD+K +NI L K+G V  L DF
Sbjct: 119 DRKILHRDIKSQNIFLSKNGMVAKLGDF 146

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE----REIMSL--LDHPF 367
           +G G  G V   + +  GE  A+K +       R       I     REI +L    HP+
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKV-----ALRRL--EGGIPNQALREIKALQACQHPY 60

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L   F   +   L+ ++ P   L  +L  +  +   E   + Y   ++ G+ Y+H  
Sbjct: 61  VVKLLDVFPHGSGFVLVMEYMPSD-LSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHAN 118

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-KPQVFYHAHVNGFY 474
           GI++RDLKP N+L+  DG + + DF L+ + S  +P+++ H     +Y
Sbjct: 119 GIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWY 166

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-- 364
            ++ I+ +G G  G V+       GEL A+K     V+          I++EI  L +  
Sbjct: 4   DYELIQRIGSGTYGDVYKARDIATGELVAIK-----VIKLEPGDDFEIIQQEISMLKECR 58

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLE 422
           HP +   + S+     + ++ ++C GG L  +      P+    E    +   E + GL 
Sbjct: 59  HPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLS---ELQIAYVCRETLKGLA 115

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YLH  G I+RD+K  NILL +DG V L DF +S
Sbjct: 116 YLHETGKIHRDIKGANILLTEDGDVKLADFGVS 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAME------KSVMLNRNKVHRACIERE--IMSL 362
            K LG G  G V+       G L      +      K++  + ++       RE  IM  
Sbjct: 4   GKKLGEGAFGEVYK------GTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRK 57

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           LDHP +  L         + ++ ++ PGG+L   L K   K         +A ++  G+E
Sbjct: 58  LDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGME 117

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YL     I+RDL   N L+ ++  V ++DF LS
Sbjct: 118 YLESKNFIHRDLAARNCLVGENLVVKISDFGLS 150

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY----AMKAMEKSVMLNRNKVHRACIERE--IMSLLD 364
            K LG G  G V+   L+G GE      A+K +++       +  R     E  IM  L 
Sbjct: 4   GKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGAS----EEEREEFLEEASIMKKLS 59

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L         + ++T++ PGG+L   L K   K+  +D  +  A ++  G+EYL
Sbjct: 60  HPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQM-ALQIAKGMEYL 118

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                ++RDL   N L+ ++  V ++DF LS
Sbjct: 119 ESKNFVHRDLAARNCLVTENLVVKISDFGLS 149

Length = 258

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHP 366
           + I  LG G+ GSV  V+    G + A    +K V +      R  I RE  IM     P
Sbjct: 8   ETISDLGAGNGGSVSKVKHIPTGTVMA----KKVVHIGAKSSVRKQILRELQIMHECRSP 63

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ-PMKIFREDSARFYAAEVVIGLEYLH 425
           ++ + Y +F    +IC+  +F   G L  +  K  P+     +     A  VV GL YL+
Sbjct: 64  YIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKGGPI---PVEILGKIAVAVVEGLTYLY 120

Query: 426 -CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               I++RD+KP NIL+   G + L DF +S
Sbjct: 121 NVHRIMHRDIKPSNILVNSRGQIKLCDFGVS 151

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 69.5 bits (171), Expect = 3e-13
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
           ++ I  +G G  G V+    +  GEL A+K +       +       I REI  L  L H
Sbjct: 1   YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENE--KEGFPITAI-REIKLLQKLRH 57

Query: 366 PFLPTLY---ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           P +  L     S    + I ++ ++    +L  LLD  P   F E   + Y  +++ GL+
Sbjct: 58  PNIVRLKEIVTSKGKGS-IYMVFEYMDH-DLTGLLD-SPEVKFTESQIKCYMKQLLEGLQ 114

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-FMTSCKPQVF 465
           YLH  GI++RD+K  NIL+  DG + L DF L+   T      +
Sbjct: 115 YLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADY 158

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 1/149 (0%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
           H+ PI+ LG G  G   L        L   K +  +  L+  +   A  E  I+SLL HP
Sbjct: 1   HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLT-RLSEKERRDALNEIVILSLLQHP 59

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +   Y  F     + +  ++  GG L+  + +Q  ++F E+   +Y  ++V  + Y+H 
Sbjct: 60  NIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHK 119

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            GI++RD+K  NI L K G + L DF +S
Sbjct: 120 AGILHRDIKTLNIFLTKAGLIKLGDFGIS 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 11/150 (7%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR-----ACIEREIMSL--LDHP 366
           +G G  G V+L      GE+ A+K +E    +      R       +  EI +L  LDH 
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68

Query: 367 FLPTLYASFQTS-THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
            +   Y  F+T+  ++ +  ++ PGG + + L +   + F E   RF+  +V+ GL YLH
Sbjct: 69  NIVQ-YLGFETTEEYLSIFLEYVPGGSIGSCL-RTYGR-FEEQLVRFFTEQVLEGLAYLH 125

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             GI++RDLK +N+L+  DG   ++DF +S
Sbjct: 126 SKGILHRDLKADNLLVDADGICKISDFGIS 155

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFL 368
            K LG G  G V+  +L+G G    ++   K++  + ++       RE  IM  LDHP +
Sbjct: 4   GKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNV 63

Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
             L         + ++ ++  GG+L + L K   K+   D   F A ++  G+EYL    
Sbjct: 64  VKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSF-ALQIARGMEYLESKN 122

Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
            I+RDL   N L+ ++  V ++DF LS
Sbjct: 123 FIHRDLAARNCLVGENLVVKISDFGLS 149

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREI--M 360
           H K IK LG G  G V L          GE  A+K++  S      + HR+  EREI  +
Sbjct: 5   HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHS----GEEQHRSDFEREIEIL 60

Query: 361 SLLDHPFLPTL--YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAE 416
             LDH  +              + LI ++ P G L   L +   +I   +  R   ++++
Sbjct: 61  RTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQI---NLKRLLLFSSQ 117

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  G++YL     I+RDL   NIL++ +  V ++DF L+
Sbjct: 118 ICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLA 156

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 7/149 (4%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
           ++ +  +G G  G V+    +  GE+ A+K ++       ++       REI  L  L+H
Sbjct: 1   YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLR---FESEGIPKTALREIKLLKELNH 57

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +  L   F+    + L+ +F    +L+ L+  +  +   E   + Y  +++ GL + H
Sbjct: 58  PNIIKLLDVFRHKGDLYLVFEFMDT-DLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCH 115

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDL 454
             GI++RDLKPEN+L+  +G + L DF L
Sbjct: 116 SHGILHRDLKPENLLINTEGVLKLADFGL 144

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 20/158 (12%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNK-VHRACIEREIMSL--LD 364
           ++  K LG G    V+    +  G + A+K ++          ++   + REI  L  L 
Sbjct: 2   YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTAL-REIKLLQELK 60

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV------- 417
           HP +  L   F   ++I L+ +F          D +  K+ ++ S     A++       
Sbjct: 61  HPNIIGLLDVFGHKSNINLVFEFMET-------DLE--KVIKDKSIVLTPADIKSYMLMT 111

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + GLEYLH   I++RDLKP N+L+  DG + L DF L+
Sbjct: 112 LRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLA 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 19/160 (11%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--- 364
           F+ ++ +G G  G V+    +  G+L A+K M      +  +     I+ E   L     
Sbjct: 8   FELVEVIGEGTYGKVYKARHKKTGQLVAIKIM------DIIEDEEEEIKEEYNILRKYSN 61

Query: 365 HPFLPTLYASFQTSTHIC------LITDFCPGG---ELFALLDKQPMKIFREDSARFYAA 415
           HP + T Y +F             L+ + C GG   +L   L K+  ++ +E+   +   
Sbjct: 62  HPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRL-KEEWIAYILR 120

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E + GL YLH   +I+RD+K +NILL K+  V L DF +S
Sbjct: 121 ETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 10/131 (7%)

Query: 322 VHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI 381
           V LV      + + +K + KS   +R +     I   +      P +  L+    +   +
Sbjct: 9   VLLVMDTRTQQTFILKGLRKSSEYSRER--LTIIPHCV------PNMVCLHKYIVSEDSV 60

Query: 382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL 441
            L+     GG+L++ + K  + I  E+  + +AAE+V+ L+ LH  GI+ RDL P NILL
Sbjct: 61  FLVLQHAEGGKLWSHISKF-LNI-PEECVKRWAAEMVVALDALHREGIVCRDLNPNNILL 118

Query: 442 QKDGHVVLTDF 452
              GH+ LT F
Sbjct: 119 DDRGHIQLTYF 129

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 65.6 bits (161), Expect = 8e-12
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 4/101 (3%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           REI  L  L HP +  L     T   + L+ ++C   +L   LDK+P  +   +  +   
Sbjct: 47  REISLLKELKHPNIVKLLDVIHTERKLYLVFEYCDM-DLKKYLDKRPGPL-SPNLIKSIM 104

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++ GL Y H   I++RDLKP+NIL+ +DG + L DF L+
Sbjct: 105 YQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLA 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 65.2 bits (159), Expect = 9e-12
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 12/150 (8%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDH 365
           ++ ++ +G G  G+V+  +    G + A+K +     L+      + I+RE+  +S L  
Sbjct: 3   YQRLELIGRGAYGAVYRGKHVPTGRVVALKIIN----LDTPDDDVSDIQREVALLSQLRQ 58

Query: 366 PFLPTL---YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
              P +   Y S+     + +I ++  GG +  L+   P+    E        EV++ L+
Sbjct: 59  SQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIA---EKYISVIIREVLVALK 115

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           Y+H +G+I+RD+K  NIL+   G+V L DF
Sbjct: 116 YIHKVGVIHRDIKAANILVTNTGNVKLCDF 145

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 14/158 (8%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL----- 362
           ++ +  +G G  G+V+       G   A+K +   V L+   +  + + REI  L     
Sbjct: 1   YEELAEIGEGAYGTVYKARDLNTGRFVALKKV--RVPLSEEGIPLSTL-REIALLKQLES 57

Query: 363 LDHPFLPTLYASFQTS-----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
            +HP +  L              + L+ +     +L   L K P      ++ +    ++
Sbjct: 58  FEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQL 116

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + G+++LH   I++RDLKP+NIL+  DG V + DF L+
Sbjct: 117 LRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLA 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 8/146 (5%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G+ GSV+ V  +  G   AMK  E  + L+ +K ++  +E +I+     P++   Y 
Sbjct: 9   LGKGNYGSVYKVLHRPTGVTMAMK--EIRLELDESKFNQIIMELDILHKAVSPYIVDFYG 66

Query: 374 SF--QTSTHICLITDFCPGGELFALLD-KQPMKIFREDSARFYAAEVVIGLEYL-HCLGI 429
           +F  + + ++C+  ++   G L  L       +   ED  R     VV GL++L     I
Sbjct: 67  AFFIEGAVYMCM--EYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNI 124

Query: 430 IYRDLKPENILLQKDGHVVLTDFDLS 455
           I+RD+KP N+L+  +G V L DF +S
Sbjct: 125 IHRDVKPTNVLVNGNGQVKLCDFGVS 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFLP 369
           K LG G  G V+  +L+G        A+ K++  + ++  R    +E  +M  L HP + 
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAV-KTLKEDASEEERKDFLKEARVMKKLGHPNVV 59

Query: 370 TLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF-------YAAEVVIGLE 422
            L         + L+ ++  GG+L   L K        + +         +A ++  G+E
Sbjct: 60  RLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGME 119

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YL     ++RDL   N L+ +D  V ++DF LS
Sbjct: 120 YLASKKFVHRDLAARNCLVGEDLVVKISDFGLS 152

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G+ G+V+         + A+K +   + +   K  +   E EI+   D P++   Y 
Sbjct: 9   LGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQK--QIMSELEILYKCDSPYIIGFYG 66

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           +F     I + T+F  GG L  +  K P  +         A  VV GL YL  L I++RD
Sbjct: 67  AFFVENRISICTEFMDGGSL-DVYRKIPEHVLGR-----IAVAVVKGLTYLWSLKILHRD 120

Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           +KP N+L+   G V L DF +S
Sbjct: 121 VKPSNMLVNTRGQVKLCDFGVS 142

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 61.9 bits (150), Expect = 9e-11
 Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 6/148 (4%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFL 368
           ++ +G G  G V LV  +  G+ Y +K +    + N ++  R   E+E  ++S L HP +
Sbjct: 5   VRVVGKGSYGEVSLVRHRTDGKQYVIKKLN---LRNASRRERKAAEQEAQLLSQLKHPNI 61

Query: 369 PTLYASFQ-TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
                S++     + ++  FC GG+L+  L +Q  K+  E+    +  ++ + L+YLH  
Sbjct: 62  VAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK 121

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
            I++RDLK +N+ L +   + + D  ++
Sbjct: 122 HILHRDLKTQNVFLTRTNIIKVGDLGIA 149

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           I  LG G  G V+  + +  G L A K ++     +  ++    +E +I++  DHP +  
Sbjct: 10  IGELGDGAFGKVYKAQNKETGVLAAAKVIDTK---SEEELEDYMVEIDILASCDHPNIVK 66

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L  +F    ++ ++ +FC GG + A++  +  +   E   R    + +  L YLH   II
Sbjct: 67  LLDAFYYENNLWILIEFCAGGAVDAVM-LELERPLTEPQIRVVCKQTLEALNYLHENKII 125

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDLK  NIL   DG + L DF +S
Sbjct: 126 HRDLKAGNILFTLDGDIKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 14/164 (8%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL----- 362
           ++P+  +G G  G+V+      +G   A+K++   V  N + +  + + RE+  L     
Sbjct: 2   YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVR--VQTNEDGLPLSTV-REVALLKRLEA 58

Query: 363 LDHPFLPTLY---ASFQT--STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
            DHP +  L    A+ +T   T + L+ +     +L   LDK P      ++ +    + 
Sbjct: 59  FDHPNIVRLMDVCATSRTDRETKVTLVFEHV-DQDLRTYLDKVPPPGLPAETIKDLMRQF 117

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK 461
           + GL++LH   I++RDLKPENIL+   G V L DF L+ + SC+
Sbjct: 118 LRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQ 161

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 14/164 (8%)

Query: 292 AIQKITGSGE-KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKV 350
           A+Q +   G+ +  L +F  I   G G TG V +  ++ +G+L A+K M+      R + 
Sbjct: 8   ALQMVVDPGDPRTYLDNFIKI---GEGSTGIVCIATVKSSGKLVAVKKMDL-----RKQQ 59

Query: 351 HRACIEREIMSLLD--HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRED 408
            R  +  E++ + D  H  +  +Y S+     + ++ +F  GG L  ++    M    E+
Sbjct: 60  RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EE 116

Query: 409 SARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
                   V+  L  LH  G+I+RD+K ++ILL  DG V L+DF
Sbjct: 117 QIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 7/159 (4%)

Query: 315 GCGDTGSVHLVELQGAGELYAMK--AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLY 372
              D   VHL + +    L A+K   ++     +   + +  I       L HP +    
Sbjct: 9   CFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEII---TSRQLQHPNILPYV 65

Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYR 432
            SF   + + +++     G    LL     +   E +  F   +V+  L+Y+H  G I+R
Sbjct: 66  TSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHR 125

Query: 433 DLKPENILLQKDGHVVLTDFD--LSFMTSCKPQVFYHAH 469
            +K  +ILL  DG VVL+     +S +   K Q   H  
Sbjct: 126 SVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDF 164

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 6/150 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAME--KSVMLNRNKVHRACI-EREIMSLL 363
            +   + LG G   S +       G L A+K +   ++    + +V  A   E  +M+ L
Sbjct: 1   EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARL 60

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +HP +  +  +    +H  L  ++  GG +  LL K     F+E     Y  +++ GL Y
Sbjct: 61  NHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSK--YGAFKEAVIINYTEQLLRGLSY 118

Query: 424 LHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           LH   II+RD+K  N+L+   G  + + DF
Sbjct: 119 LHENQIIHRDVKGANLLIDSTGQRLRIADF 148

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            ++ ++ +G G  G+V  V  +  G++   K ++   M  + K  +   E  I+  L HP
Sbjct: 1   DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEK-QQLVSEVNILRELKHP 59

Query: 367 FLPTLYASF--QTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLE 422
            +   Y     +++  + ++ ++C GG+L  L+ K  +  K   E+       ++++ L 
Sbjct: 60  NIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALY 119

Query: 423 YLHCLG-----IIYRDLKPENILLQKDGHVVLTDFDLS 455
             H        +++RDLKP NI L  + +V L DF L+
Sbjct: 120 ECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLA 157

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 60.1 bits (145), Expect = 5e-10
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--H 365
           F+ I+ +G G  G V+       GEL A+K ++     +      A +++EI+ + D  H
Sbjct: 11  FELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDF-----AVVQQEIIMMKDCKH 65

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLD-KQPMKIFREDSARFYAAEVVIGLEYL 424
             +   + S+     + +  +FC GG L  +     P+    E    + + E + GL YL
Sbjct: 66  SNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLS---ESQIAYVSRETLQGLYYL 122

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H  G ++RD+K  NILL  +GHV L DF +S
Sbjct: 123 HSKGKMHRDIKGANILLTDNGHVKLADFGVS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 15/168 (8%)

Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAM-EKSVMLNRNKVHRACIEREIMSL 362
            + IK LG G  G+V+    + E +      A+K + E++      ++     E  +M+ 
Sbjct: 9   LEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILD---EAYVMAS 65

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLD--KQPMKIFREDSARFYAAEVVIG 420
           +DHP +  L     +S    LIT   P G    LLD  +             +  ++  G
Sbjct: 66  VDHPHVVRLLGICLSSQV-QLITQLMPLG---CLLDYVRNHKDNIGSQYLLNWCVQIAKG 121

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           + YL    +++RDL   N+L++   HV +TDF L+ +     +  YHA
Sbjct: 122 MSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKE-YHA 168

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 10/149 (6%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDHPFLP 369
           K LG G  G V+L      G   A+K +         K     +E EI  +  L H  + 
Sbjct: 8   KLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIV 67

Query: 370 TLYASFQTSTHICLITDFCPGGELFALLDKQPMKIF---REDSARFYAAEVVIGLEYLHC 426
             Y   +    + +  ++ PGG +     K  +K +    E   R Y  +++ G+EYLH 
Sbjct: 68  QYYGCLRDDETLSIFMEYMPGGSV-----KDQLKAYGALTETVTRKYTRQILEGVEYLHS 122

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             I++RD+K  NIL    G+V L DF  S
Sbjct: 123 NMIVHRDIKGANILRDSAGNVKLGDFGAS 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 14/164 (8%)

Query: 292 AIQKITGSGE-KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKV 350
           A+Q +   G+ +  L +F  I   G G TG V +   +  G   A+K M+      R + 
Sbjct: 7   ALQLVVDPGDPRSYLDNFVKI---GEGSTGIVCIATDKSTGRQVAVKKMDL-----RKQQ 58

Query: 351 HRACIERE--IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRED 408
            R  +  E  IM    HP +  +Y+S+     + ++ +F  GG L  ++    M    E+
Sbjct: 59  RRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EE 115

Query: 409 SARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
                   V+  L +LH  G+I+RD+K ++ILL  DG V L+DF
Sbjct: 116 QIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 22/171 (12%)

Query: 295 KITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRAC 354
            I G      L+  + +  +G G  G V+ +  +  G + A+K M ++   N+ +  R  
Sbjct: 4   TIDGQKYPADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTG--NKEENKRIL 61

Query: 355 IEREIMSL-LDHPFLPTLYASFQTSTH--ICLITDFCPGGELFAL-LDKQPMKI---FRE 407
           ++ +++    D P++   Y  F T +   IC+        EL +  LDK   +I     E
Sbjct: 62  MDLDVVLKSHDCPYIVKCYGYFITDSDVFICM--------ELMSTCLDKLLKRIQGPIPE 113

Query: 408 DSARFYAAEVVIGLEYL---HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           D        +V  L YL   H  G+I+RD+KP NILL   G+V L DF +S
Sbjct: 114 DILGKMTVAIVKALHYLKEKH--GVIHRDVKPSNILLDASGNVKLCDFGIS 162

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 21/160 (13%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMS 361
           F+ ++ +G G  G V+       G+L A+K M      E+ + L  N + +    R I  
Sbjct: 18  FELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNI-- 75

Query: 362 LLDHPFLPTLYASFQTST------HICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
                   T Y +F   +       + L+ +FC  G +  L+        +ED   +   
Sbjct: 76  -------ATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICR 128

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E++ GL +LH   +I+RD+K +N+LL ++  V L DF +S
Sbjct: 129 EILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVS 168

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM  LDH  L  LY    T   + ++T+  P G L   L K  +  F   +   YA 
Sbjct: 46  EAAIMHSLDHENLIRLYGVVLTHP-LMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAV 104

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++  G+ YL     I+RDL   NILL  D  V + DF L 
Sbjct: 105 QIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLM 144

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 14/164 (8%)

Query: 292 AIQKITGSGE-KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKV 350
           A+Q +   G+ +  L  F  I   G G TG V +   +  G+  A+K M+      R + 
Sbjct: 10  ALQLVVSPGDPREYLDSFIKI---GEGSTGIVCIATEKHTGKQVAVKKMDL-----RKQQ 61

Query: 351 HRACIEREIMSLLD--HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRED 408
            R  +  E++ + D  H  +  +Y S+     + ++ +F  GG L  ++    M    E+
Sbjct: 62  RRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EE 118

Query: 409 SARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
                   V+  L YLH  G+I+RD+K ++ILL  DG + L+DF
Sbjct: 119 QIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDF 162

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 16/180 (8%)

Query: 280 PRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAM 339
           P P    +SS  +    +       L   + +  +G G  G+V+ V  +  G LYA+K +
Sbjct: 48  PPPSSSSSSSSSSSASGSAPSAAKSLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVI 107

Query: 340 ----EKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFA 395
               E +V   R ++   C E EI+  ++HP +   +  F  +  I ++ +F  GG L  
Sbjct: 108 YGNHEDTV---RRQI---CREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSL-- 159

Query: 396 LLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               +   I  E      A +++ G+ YLH   I++RD+KP N+L+    +V + DF +S
Sbjct: 160 ----EGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVS 215

Length = 353

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 7/150 (4%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V+ + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 7   FERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 63

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL-H 425
           ++   Y +F +   I +  +   GG L  +L K+  +I  E   +   A V+ GL YL  
Sbjct: 64  YIVGFYGAFYSDGEISICMEHMDGGSLDQVL-KEAKRIPEEILGKVSIA-VLRGLAYLRE 121

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I++RD+KP NIL+   G + L DF +S
Sbjct: 122 KHQIMHRDVKPSNILVNSRGEIKLCDFGVS 151

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 21/160 (13%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLD 364
            ++ +KP+G G  G V     +  G   A+K   K   +  + +    I REI  +  L 
Sbjct: 1   RYELLKPIGSGAYGVVCSAVDKRTGRKVAIK---KISNVFDDLIDAKRILREIKLLRHLR 57

Query: 365 HP--------FLPTLYASFQTSTHICLITDFCPGGELFALL-DKQPMKIFREDSARFYAA 415
           H           P     F     + ++T+     +L  ++   QP+    +D  +++  
Sbjct: 58  HENIIGLLDILRPPSPEDFND---VYIVTELMET-DLHKVIKSPQPL---TDDHIQYFLY 110

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++ GL+YLH   +I+RDLKP NIL+  +  + + DF L+
Sbjct: 111 QILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLA 150

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 57.4 bits (138), Expect = 3e-09
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  ++S  D P++   Y S+   T + +I ++  GG    LL+  P+    E        
Sbjct: 52  EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLD---ETQIATILR 108

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E++ GL+YLH    I+RD+K  N+LL + G V L DF ++
Sbjct: 109 EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-EREIMSLL 363
           L +FK  K +G G    V+       G + A+K ++   M++  K  + C+ E +++  L
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDA-KARQDCLKEIDLLKQL 59

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLD--KQPMKIFREDSARFYAAEVVIGL 421
           DHP +    ASF  +  + ++ +    G+L  ++   K+  ++  E +   Y  ++   L
Sbjct: 60  DHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSAL 119

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           E++H   I++RD+KP N+ +   G V L D  L
Sbjct: 120 EHMHSKRIMHRDIKPANVFITATGVVKLGDLGL 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 331 GELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTLYASFQTSTHICLITDFC 388
           GE+ A+K  ++S     ++  +    RE+  L  L H  +  L  +F+    + L+ ++ 
Sbjct: 26  GEIVAIKKFKES---EDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYV 82

Query: 389 PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV 448
               L  LL+  P      D+ R Y  +++  + Y H   II+RD+KPENIL+ + G + 
Sbjct: 83  ER-TLLELLEASP-GGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLK 140

Query: 449 LTDFDLSFMTSCKPQVFYHAHV 470
           L DF  +     +P      +V
Sbjct: 141 LCDFGFARALRARPASPLTDYV 162

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 21/164 (12%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE-------- 358
            ++ + P+G G  G V        G   A+K + +     ++ +H     RE        
Sbjct: 16  RYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPF---QSAIHAKRTYRELRLLKHMD 72

Query: 359 ---IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
              ++ LLD  F P   +S +    + L+T    G +L  ++  Q +    +D  +F   
Sbjct: 73  HENVIGLLD-VFTPA--SSLEDFQDVYLVTHLM-GADLNNIVKCQKLS---DDHIQFLVY 125

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           +++ GL+Y+H  GII+RDLKP NI + +D  + + DF L+  T 
Sbjct: 126 QILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTD 169

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 56.6 bits (136), Expect = 7e-09
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 355 IEREI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
           I++EI  +S  D P++   Y S+   T + +I ++  GG    LL   P   F E     
Sbjct: 49  IQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGP---FDEFQIAT 105

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              E++ GL+YLH    I+RD+K  N+LL + G V L DF ++
Sbjct: 106 MLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 56.0 bits (136), Expect = 8e-09
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P    LY S  T     LI D+   G+LF LL K+      E   +    ++V  L  
Sbjct: 67  DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKKE--GKLSEAEVKKIIRQLVEALND 124

Query: 424 LHCLGIIYRDLKPENILL-QKDGHVVLTDFDLS 455
           LH   II+ D+K EN+L  +    + L D+ L 
Sbjct: 125 LHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLC 157

Length = 267

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 56.4 bits (136), Expect = 9e-09
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 23/165 (13%)

Query: 314 LGCGDTGSVHLVELQGAGEL----YAMKAMEKSVML----------NRNKVHRACIEREI 359
           LG G  G VHL E +G  +     +++       +L          N+N  +    E +I
Sbjct: 13  LGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKI 72

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSA--------- 410
           MS L  P +  L A   TS  +C+IT++   G+L   L +   +   E +          
Sbjct: 73  MSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTL 132

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            F A ++  G++YL  L  ++RDL   N L+ K+  + + DF +S
Sbjct: 133 IFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMS 177

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 355 IEREI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
           I++EI  +S  D P++   Y S+   T + +I ++  GG    LL   P++   E     
Sbjct: 49  IQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPGPLE---ETYIAT 105

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              E++ GL+YLH    I+RD+K  N+LL + G V L DF ++
Sbjct: 106 ILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 6/145 (4%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G VHL + +G  ++ A+K + +  M   + +  A    ++M  L HP L  
Sbjct: 9   LKELGSGQFGVVHLGKWRGKIDV-AIKMIREGAMSEDDFIEEA----KVMMKLSHPNLVQ 63

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        I ++T++   G L   L ++       +      ++V   +EYL   G I
Sbjct: 64  LYGVCTKQRPIFIVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESNGFI 122

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+ +D  V ++DF L+
Sbjct: 123 HRDLAARNCLVGEDNVVKVSDFGLA 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 22/147 (14%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +G G +G+V+       G+  A+K M      +K +++N         E  +M    HP 
Sbjct: 27  IGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIIN---------EILVMRENKHPN 77

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA--EVVIGLEYLH 425
           +     S+     + ++ ++  GG L  ++ +  M     D  +  A   E +  LE+LH
Sbjct: 78  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCM-----DEGQIAAVCRECLQALEFLH 132

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDF 452
              +I+RD+K +NILL  DG V LTDF
Sbjct: 133 SNQVIHRDIKSDNILLGMDGSVKLTDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 10/141 (7%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTL 371
           +G G TG V +   + +G   A+K M+      R +  R  +  E++ + D  H  +  +
Sbjct: 29  IGEGSTGIVCIAREKHSGRQVAVKMMDL-----RKQQRRELLFNEVVIMRDYQHQNVVEM 83

Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y S+     + ++ +F  GG   AL D        E+        V+  L YLH  G+I+
Sbjct: 84  YKSYLVGEELWVLMEFLQGG---ALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIH 140

Query: 432 RDLKPENILLQKDGHVVLTDF 452
           RD+K ++ILL  DG V L+DF
Sbjct: 141 RDIKSDSILLTLDGRVKLSDF 161

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 16/158 (10%)

Query: 307 HFKPIKPLGCGDTGSVHLVE---LQ-GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K I+ LG G+ GSV L     LQ   GE+ A+K ++ S        H    EREI  L
Sbjct: 5   HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS-----TAEHLRDFEREIEIL 59

Query: 363 --LDHPFLPTLYASFQTST---HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
             L H  +   Y     S    ++ L+ ++ P G L   L K   ++        YA+++
Sbjct: 60  KSLQHDNI-VKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHR-KLLLYASQI 117

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             G+EYL     ++RDL   NIL++ +  V + DF L+
Sbjct: 118 CKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLT 155

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 26/161 (16%)

Query: 314 LGCGDTGSVHLVELQGAGE-LYAMKAM--------------EKSVMLNRNKVHRACIERE 358
           LG G  G V+ V  +  G+ L A+K +              +KS+    + V    I +E
Sbjct: 8   LGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSI---GDIVSEVTIIKE 64

Query: 359 IMSLLDHPFLPTLYASFQTSTHICLITDF---CPGGELFALLDKQPMKIFREDSARFYAA 415
            +    HP +   Y +F  +  + ++ D     P GE F  L K+  + F E+       
Sbjct: 65  QLR---HPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSL-KEKKQRFTEERIWNIFV 120

Query: 416 EVVIGLEYLHCLG-IIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++V+ L YLH    I++RDL P NI+L +D  V +TDF L+
Sbjct: 121 QMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLA 161

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 15/154 (9%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--H 365
           F+ +  LG G+ G V  V  + +G + A     K + L      R  I RE+  L +   
Sbjct: 3   FEKLGELGAGNGGVVTKVLHRPSGLIMA----RKLIHLEIKPAIRNQIIRELKVLHECNS 58

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLE 422
           P++   Y +F +   I +  +   GG L  +L K    P  I  + S    A  V+ GL 
Sbjct: 59  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPENILGKIS---IA--VLRGLT 113

Query: 423 YLH-CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YL     I++RD+KP NIL+   G + L DF +S
Sbjct: 114 YLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 147

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 16/198 (8%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-EREIMSLL 363
           L +F+  K +G G    V+       G   A+K ++   +++  K    CI E +++  L
Sbjct: 1   LANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDA-KARADCIKEIDLLKQL 59

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLD--KQPMKIFREDSARFYAAEVVIGL 421
           +HP +   YASF     + ++ +    G+L  ++   K+  ++  E +   Y  ++   L
Sbjct: 60  NHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSAL 119

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV--------FYHA----H 469
           E++H   +++RD+KP N+ +   G V L D  L    S K           +Y +    H
Sbjct: 120 EHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH 179

Query: 470 VNGFYFIMYKWLTGYFTY 487
            NG+ F    W  G   Y
Sbjct: 180 ENGYNFKSDIWSLGCLLY 197

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 20/157 (12%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE---IMSLLDHPF 367
           I+ +G G  G V+ V  +  G L A+K ++    ++        IE E   + SL +HP 
Sbjct: 27  IETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEE------IEAEYNILQSLPNHPN 80

Query: 368 LPTLYASFQTSTH-----ICLITDFCPGGELFALLDKQPMKIFREDSAR----FYAAEVV 418
           +   Y  F  +       + L+ + C GG +  L+    +   R D A      Y A  +
Sbjct: 81  VVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGA--L 138

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +GL++LH   II+RD+K  NILL  +G V L DF +S
Sbjct: 139 LGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVS 175

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 20/162 (12%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +  ++PLGCG  G V         +  A+K   K V+ +   V  A  E +I+  LDH  
Sbjct: 7   YMDLRPLGCGSNGLVFSAVDSDCDKRVAVK---KIVLTDPQSVKHALREIKIIRRLDHDN 63

Query: 368 LPTLY-------------ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           +  +Y                 T  +   I       +L  +L++ P+    E+ AR + 
Sbjct: 64  IVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQGPLS---EEHARLFM 120

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDFDLS 455
            +++ GL+Y+H   +++RDLKP N+ +  +  V+ + DF L+
Sbjct: 121 YQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLA 162

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 21/159 (13%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-MSLLDHP 366
            + I+ LG G  G V  +     G + A+K +  +V  N  +  R  ++ +I M  +D P
Sbjct: 3   LEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATV--NSQEQKRLLMDLDISMRSVDCP 60

Query: 367 FLPTLY-ASFQT-STHICL-ITDFCPGGELFALLDK------QPMKIFREDSARFYAAEV 417
           +  T Y A F+     IC+ + D          LDK             ED     A  +
Sbjct: 61  YTVTFYGALFREGDVWICMEVMDTS--------LDKFYKKVYDKGLTIPEDILGKIAVSI 112

Query: 418 VIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           V  LEYLH  L +I+RD+KP N+L+ ++G V L DF +S
Sbjct: 113 VKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGIS 151

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 15/157 (9%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--- 364
           F+ ++ +G G  G V+       G+L A+K M+ +            I++EI  L     
Sbjct: 8   FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT------GDEEEEIKQEINMLKKYSH 61

Query: 365 HPFLPTLYASFQTST------HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           H  + T Y +F           + L+ +FC  G +  L+        +E+   +   E++
Sbjct: 62  HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREIL 121

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            GL +LH   +I+RD+K +N+LL ++  V L DF +S
Sbjct: 122 RGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 158

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G VHL + +   ++ A+KA+ +  M   + +  A    ++M  L HP L  
Sbjct: 9   MKELGSGQFGVVHLGKWRAQIKV-AIKAINEGAMSEEDFIEEA----KVMMKLSHPKLVQ 63

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        + ++T+F   G L   L +Q      +D       +V  G+EYL     I
Sbjct: 64  LYGVCTQQKPLYIVTEFMENGCLLNYL-RQRQGKLSKDMLLSMCQDVCEGMEYLERNSFI 122

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+   G V ++DF ++
Sbjct: 123 HRDLAARNCLVSSTGVVKVSDFGMT 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 39/167 (23%), Positives = 80/167 (47%), Gaps = 4/167 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ ++ LG G   +V+  + +  G+L A+K +   +         A  E  ++  L H  
Sbjct: 7   YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIR--LQEEEGTPFTAIREASLLKGLKHAN 64

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L+    T   + L+ ++    +L   +DK P  +   ++ + +  +++ GL Y+H  
Sbjct: 65  IVLLHDIIHTKETLTLVFEYV-HTDLCQYMDKHPGGL-HPENVKLFLFQLLRGLSYIHQR 122

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
            I++RDLKP+N+L+   G + L DF L+   S     + +  V  +Y
Sbjct: 123 YILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWY 169

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 7   FEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 63

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 64  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 118

Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 119 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 151

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ--PMKIFREDSARFY 413
           E  + S L H  +     S   +    +  +  PGG L ALL  +  P+K   E +  FY
Sbjct: 55  EIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKD-NEQTIIFY 113

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLS 455
             +++ GL+YLH   I++RD+K +N+L+    G V ++DF  S
Sbjct: 114 TKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTS 156

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           REI  L  L HP L  L   F+    + L+ ++C    +   L+K P  +  E   +   
Sbjct: 49  REIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYC-DHTVLNELEKNPRGV-PEHLIKKII 106

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
            + +  + + H    I+RD+KPENIL+ K G + L DF
Sbjct: 107 WQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 24/165 (14%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS---VML---------NRNKVHRACIEREIMS 361
           LG G  G VHL E +G  E     A E     V++          +   +    E +IMS
Sbjct: 13  LGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMS 72

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK-----------IFREDSA 410
            L +P +  L     +   +C+IT++   G+L   L ++ ++           +   +  
Sbjct: 73  RLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIAN-L 131

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            + A ++  G++YL  L  ++RDL   N L+     + + DF +S
Sbjct: 132 LYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMS 176

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 8/153 (5%)

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM 360
           EK+    F  ++ +G G  G+V+        E+ A+K M  S   +  K      E   +
Sbjct: 14  EKL----FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFL 69

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFAL-LDKQPMKIFREDSARFYAAEVVI 419
             L HP        +       L+ ++C G     L + K+P+   +E          + 
Sbjct: 70  QQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDILEVHKKPL---QEVEIAAICHGALQ 126

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           GL YLH    I+RD+K  NILL + G V L DF
Sbjct: 127 GLAYLHSHERIHRDIKAGNILLTEPGTVKLADF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 23/172 (13%)

Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 9   FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 66

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF-------YAAE 416
           D+P +  L     TST + LIT   P G    LLD       RE            +  +
Sbjct: 67  DNPHVCRLLGICLTST-VQLITQLMPFG---CLLD-----YVREHKDNIGSQYLLNWCVQ 117

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           +  G+ YL    +++RDL   N+L++   HV +TDF L+ +     +  YHA
Sbjct: 118 IAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKE-YHA 168

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 312 KPLGCGDTGSVH--LVELQGAGEL-YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           K LG G+ GSV   +  ++   E+  A+K +++  +    K      E  +M+ LDHP +
Sbjct: 1   KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLR--EASVMAQLDHPCI 58

Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
             L    +    + L+ +  P G L   L K+          +  A +V +G+ YL    
Sbjct: 59  VRLIGVCK-GEPLMLVMELAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESKH 115

Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
            ++RDL   N+LL       ++DF +S
Sbjct: 116 FVHRDLAARNVLLVNRHQAKISDFGMS 142

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G+ G V L + +G  +  A+K ++     +         E  +M+ L HP L  L  
Sbjct: 14  IGKGEFGDVMLGDYRG--QKVAVKCLKD----DSTAAQAFLAEASVMTTLRHPNLVQLLG 67

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                  + ++T++   G L   L  +   +        +A +V  G+EYL     ++RD
Sbjct: 68  VVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRD 127

Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N+L+ +D    ++DF L+
Sbjct: 128 LAARNVLVSEDLVAKVSDFGLA 149

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 10/148 (6%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEK--SVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++P+G G  G V     Q  G+  A+K + K  S  +   + +R   E +++  L H  +
Sbjct: 15  LQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYR---ELKLLKHLRHENI 71

Query: 369 PTLYASF-QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
            +L   F      I  +T+   G +L  LL  +P++   +   +++  +++ GL+Y+H  
Sbjct: 72  ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSRPLE---KQFIQYFLYQILRGLKYVHSA 127

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
           G+++RDLKP NIL+ ++  + + DF L+
Sbjct: 128 GVVHRDLKPSNILINENCDLKICDFGLA 155

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
           F+ ++ +G G  G V+    +  GE+ A+K +   +      V    I REI  L  L+H
Sbjct: 2   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIR--LDTETEGVPSTAI-REISLLKELNH 58

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +  L     T   + L+ +F    +L   +D  P+        + Y  +++ GL + H
Sbjct: 59  PNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCH 117

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              +++RDLKP+N+L+  +G + L DF L+
Sbjct: 118 SHRVLHRDLKPQNLLINTEGAIKLADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 20/152 (13%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G V   + +G  ++ A+K +++  M     +  A    ++M  L H  L  
Sbjct: 9   LKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFIEEA----KVMMKLSHEKLVQ 63

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE-------VVIGLEY 423
           LY        I ++T++   G L   L        RE   RF  ++       V  G+ Y
Sbjct: 64  LYGVCTKQRPIYIVTEYMSNGCLLNYL--------REHGKRFQPSQLLEMCKDVCEGMAY 115

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I+RDL   N L+   G V ++DF LS
Sbjct: 116 LESKQFIHRDLAARNCLVDDQGCVKVSDFGLS 147

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
            QP+    E+  R++  +++ GL+Y+H   +I+RDLKP N+L+ +D  + + DF
Sbjct: 101 DQPLT---EEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDF 151

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMK--AMEKSVMLNRNKVHRACIER-EIMSLLDHPFLPT 370
           LG G  G+V+   L   G+L A+K   ++ S +L   K +    E  +++  L H  +  
Sbjct: 8   LGKGAYGTVYC-GLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQ 66

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
              +      I +  +F PGG + ++L++       E     Y  +++ G+ YLH   ++
Sbjct: 67  YLGTCLDDNTISIFMEFVPGGSISSILNR--FGPLPEPVFCKYTKQILDGVAYLHNNCVV 124

Query: 431 YRDLKPENILLQKDGHVVLTDF 452
           +RD+K  N++L  +G + L DF
Sbjct: 125 HRDIKGNNVMLMPNGIIKLIDF 146

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 18/145 (12%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +G G +G+V+       G+  A++ M      +K +++N   V R      I++ LD   
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLD--- 84

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
                 S+     + ++ ++  GG L  ++ +  M    E        E +  LE+LH  
Sbjct: 85  ------SYLVGDELWVVMEYLAGGSLTDVVTETCMD---EGQIAAVCRECLQALEFLHSN 135

Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
            +I+RD+K +NILL  DG V LTDF
Sbjct: 136 QVIHRDIKSDNILLGMDGSVKLTDF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 4/153 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  ++ +G G  G+V+        E+ A+K M  S   +  K      E + +  + HP 
Sbjct: 27  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN 86

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFAL-LDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
                  +       L+ ++C G     L + K+P++   E +A  + A  + GL YLH 
Sbjct: 87  SIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEV-EIAAITHGA--LQGLAYLHS 143

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
             +I+RD+K  NILL + G V L DF  + + S
Sbjct: 144 HNMIHRDIKAGNILLTEPGQVKLADFGSASIAS 176

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 18/145 (12%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +G G +G+V+       G+  A+K M      +K +++N   V R      I++ LD   
Sbjct: 27  IGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLD--- 83

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
                 S+     + ++ ++  GG L  ++ +  M    E        E +  L++LH  
Sbjct: 84  ------SYLVGDELWVVMEYLAGGSLTDVVTETCMD---EGQIAAVCRECLQALDFLHSN 134

Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
            +I+RD+K +NILL  DG V LTDF
Sbjct: 135 QVIHRDIKSDNILLGMDGSVKLTDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 18/156 (11%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDH 365
           FK ++ LG G   +V+    +  GE+ A+K     + L+  +   +   REI  M  L H
Sbjct: 2   FKQLEKLGEGTYATVYKGRNRTTGEIVALK----EIHLDAEEGTPSTAIREISLMKELKH 57

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSA------RFYAAEVVI 419
             +  L+    T   + L+ ++    +L     K+ M       A      + +  +++ 
Sbjct: 58  ENIVRLHDVIHTENKLMLVFEYMDK-DL-----KKYMDTHGVRGALDPNTVKSFTYQLLK 111

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           G+ + H   +++RDLKP+N+L+ K G + L DF L+
Sbjct: 112 GIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLA 147

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           +V+ GL  LH +GI++RD+KPEN+L+  DG V + DF
Sbjct: 317 QVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDF 353

Length = 507

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 397 LDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           L+K P  +  E   R Y  +++ G+E+ H   II+RD+KPENIL+ + G V L DF
Sbjct: 90  LEKYPNGL-DESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD- 364
           H ++ I+ +G G  G V+       GEL A+K ++    L       + I++EI  + + 
Sbjct: 9   HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIK----LEPGD-DFSLIQQEIFMVKEC 63

Query: 365 -HPFLPTLYASFQTSTHICLITDFCPGGELFALLD-KQPMKIFREDSARFYAAEVVIGLE 422
            H  +   + S+ +   + +  ++C GG L  +     P+    E    +   E + GL 
Sbjct: 64  KHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGPLS---ELQIAYVCRETLQGLA 120

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YLH  G ++RD+K  NILL  +G V L DF ++
Sbjct: 121 YLHSKGKMHRDIKGANILLTDNGDVKLADFGVA 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + K I+ LG G  G V L        G GE+ A+K +++       + + +  ++EI  L
Sbjct: 5   YLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKREC----GQQNTSGWKKEINIL 60

Query: 363 --LDHPFLPTLYA--SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
             L H  +       S Q    + LI ++ P G L   L K  + +        +A ++ 
Sbjct: 61  KTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNL---AQLLLFAQQIC 117

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+ YLH    I+RDL   N+LL  D  V + DF L+
Sbjct: 118 EGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLA 154

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 19/160 (11%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDH 365
           ++ +  +G G  G V     +   ++ A+K   K +M N  +       RE  I+ LL H
Sbjct: 14  YEKLAKIGQGTFGEVFKARHKKTKQIVALK---KVLMENEKEGFPITALREIKILQLLKH 70

Query: 366 P----------FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
                         T Y  ++ S    L+ +FC   +L  LL  + +K F     +    
Sbjct: 71  ENVVNLIEICRTKATPYNRYKGS--FYLVFEFCEH-DLAGLLSNKNVK-FTLSEIKKVMK 126

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            ++ GL Y+H   I++RD+K  NIL+ KDG + L DF L+
Sbjct: 127 MLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLA 166

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 34/161 (21%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEK---SVMLNRNKVHRACIEREIM---S 361
           +K +  +G G    V   + +  G+ YA+K M+K   S+    N        REI     
Sbjct: 1   YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNL-------REIQALRR 53

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLD----------KQPMKIFREDSAR 411
           L  HP +  L           L         +F L+D          K+P     E   +
Sbjct: 54  LSPHPNILRLIEVLFDRKTGRLAL-------VFELMDMNLYELIKGRKRP---LPEKRVK 103

Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
            Y  +++  L+++H  GI +RD+KPENIL+ KD  + L DF
Sbjct: 104 SYMYQLLKSLDHMHRNGIFHRDIKPENILI-KDDILKLADF 143

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 10/151 (6%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           +GLH       +G G  G+V+        E+ A+K M  S      K      E + +  
Sbjct: 24  VGLHE------IGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQ 77

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFAL-LDKQPMKIFREDSARFYAAEVVIGL 421
           L HP        +       L+ ++C G     L + K+P++   E +A  + A  + GL
Sbjct: 78  LKHPNTIEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEV-EIAAITHGA--LQGL 134

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
            YLH   +I+RD+K  NILL + G V L DF
Sbjct: 135 AYLHSHNMIHRDIKAGNILLTEPGQVKLADF 165

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSL 362
           L  ++ +  LG G  G V+       G + A+K   K +M N          REI  +  
Sbjct: 7   LRDYEILGKLGEGTFGEVYKARQIKTGRVVALK---KILMHNEKDGFPITALREIKILKK 63

Query: 363 LDHP-FLPTL-----YASFQTSTHICLITDFCP--GGELFALLDKQPMKIFREDSARFYA 414
           L HP  +P +                +     P    +L  LL+   +K   E   + Y 
Sbjct: 64  LKHPNVVPLIDMAVERPDKSKRKRGSVYMVT-PYMDHDLSGLLENPSVK-LTESQIKCYM 121

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
            +++ G+ YLH   I++RD+K  NIL+   G + + DF L
Sbjct: 122 LQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGL 161

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 22/147 (14%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +G G +G+V        G+  A+K +      +K +++N         E  +M  L +P 
Sbjct: 27  IGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIIN---------EILVMKELKNPN 77

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA--EVVIGLEYLH 425
           +     SF     + ++ ++  GG L  ++ +  M     D A+  A   E +  LE+LH
Sbjct: 78  IVNFLDSFLVGDELFVVMEYLAGGSLTDVVTETCM-----DEAQIAAVCRECLQALEFLH 132

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDF 452
              +I+RD+K +N+LL  DG V LTDF
Sbjct: 133 ANQVIHRDIKSDNVLLGMDGSVKLTDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|197509 smart00086, PAC, Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 184 TVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSD 225
           TV+     K G   W L    P+RD  GE++  +GV  D ++
Sbjct: 1   TVEYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITE 42

PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold. Length = 43

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 16/198 (8%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-EREIMSLL 363
           L +F+  K +G G    V+        +  A+K ++   M++  K  + C+ E +++  L
Sbjct: 1   LANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDA-KARQDCVKEIDLLKQL 59

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLD--KQPMKIFREDSARFYAAEVVIGL 421
           +HP +     SF     + ++ +    G+L  ++   K+  ++  E +   Y  ++   +
Sbjct: 60  NHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAV 119

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV--------FYHA----H 469
           E++H   +++RD+KP N+ +   G V L D  L    S K           +Y +    H
Sbjct: 120 EHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH 179

Query: 470 VNGFYFIMYKWLTGYFTY 487
            NG+ F    W  G   Y
Sbjct: 180 ENGYNFKSDIWSLGCLLY 197

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  G V L       ++ A+K + +  M   + +  A    ++M  L HP L  LY 
Sbjct: 12  IGSGQFGLVWLGYWLEKRKV-AIKTIREGAMSEEDFIEEA----QVMMKLSHPKLVQLYG 66

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                + ICL+ +F   G L   L  Q  K F +++      +V  G+ YL    +I+RD
Sbjct: 67  VCTERSPICLVFEFMEHGCLSDYLRAQRGK-FSQETLLGMCLDVCEGMAYLESSNVIHRD 125

Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L+ ++  V ++DF ++
Sbjct: 126 LAARNCLVGENQVVKVSDFGMT 147

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  ++ +G G  G+V+        E+ A+K M  S   +  K      E   +  L HP 
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFAL-LDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
                  +       L+ ++C G     L + K+P++   E +A  + A  + GL YLH 
Sbjct: 77  TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEV-EIAAVTHGA--LQGLAYLHS 133

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDF 452
             +I+RD+K  NILL + G V L DF
Sbjct: 134 HNMIHRDVKAGNILLSEPGLVKLGDF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 357 REIMSLLD--HPFLPTLY--ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
           REI  LL+  HP +  L      +    I L+ ++C   +L +LLD  P   F E   + 
Sbjct: 55  REITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLLDNMPTP-FSESQVKC 112

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--CKP 462
              +++ GL+YLH   II+RDLK  N+LL   G + + DF L+       KP
Sbjct: 113 LMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKP 164

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 25/163 (15%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL-- 371
           LG G TG+V   +    GE +A+K ++   M +    +RA  + E+  LL+  F   +  
Sbjct: 40  LGSGATGTVLCAKRVSDGEPFAVKVVDMEGM-SEADKNRA--QAEVCCLLNCDFFSIVKC 96

Query: 372 YASFQTS--------THICLITDFCPGGELFALLDKQPMK-------IFREDSARFYAAE 416
           +  F             I L+ D+   G+L     +Q +K        FRE  A     +
Sbjct: 97  HEDFAKKDPRNPENVLMIALVLDYANAGDL-----RQEIKSRAKTNRTFREHEAGLLFIQ 151

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           V++ + ++H   +I+RD+K  NILL  +G V L DF  S M +
Sbjct: 152 VLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYA 194

Length = 496

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 17/168 (10%)

Query: 308 FKPI-KPLGCGDTGSVHLVELQGAGELYAMKAME-----KSVMLNRNKVHRACI------ 355
           +      LG G  G V        G++ A+K ++       V  +R  V    I      
Sbjct: 10  YIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLR 69

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDS-ARFYA 414
           E +IM+ + H  +  L   +     I L+ D     +L  ++D+   KI   +S  +   
Sbjct: 70  ELKIMNEIKHENIMGLVDVYVEGDFINLVMDIM-ASDLKKVVDR---KIRLTESQVKCIL 125

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKP 462
            +++ GL  LH    ++RDL P NI +   G   + DF L+      P
Sbjct: 126 LQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPP 173

Length = 335

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAM--EKSVMLNRNKVHRACIEREIMSLLDHPFLP 369
           K LG G  G V+L      G   A+K +  +        +V+    E +++  L H  + 
Sbjct: 8   KLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIV 67

Query: 370 TLYASFQ--TSTHICLITDFCPGGELFALLDKQPMKIF---REDSARFYAAEVVIGLEYL 424
             Y   +      + +  ++ PGG +     K  +K +    E+  R Y  +++ G+ YL
Sbjct: 68  QYYGCLRDPEEKKLSIFVEYMPGGSI-----KDQLKAYGALTENVTRRYTRQILQGVSYL 122

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H   I++RD+K  NIL    G+V L DF  S
Sbjct: 123 HSNMIVHRDIKGANILRDSAGNVKLGDFGAS 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 23/165 (13%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY-----AMKAMEKSVMLN-RNKVHRACIEREIMSLLD 364
           ++ LG G  G V+  EL G  E       A+K ++++     + +  +   E E+MS L 
Sbjct: 10  LEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQ---EAELMSDLQ 66

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALL--------------DKQPMKIFREDSA 410
           HP +  L          C++ ++   G+L   L              D+           
Sbjct: 67  HPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDF 126

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              A ++  G+EYL     ++RDL   N L+ +   V ++DF LS
Sbjct: 127 LHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLS 171

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 16/155 (10%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE---IMSLLDHPF 367
           I+ +G G  G V  V  +  G   A+K ++    ++        IE E   + +L DHP 
Sbjct: 23  IETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEE------IEAEYNILKALSDHPN 76

Query: 368 LPTLYASF-----QTSTHICLITDFCPGGELFALLDKQPMKIFR--EDSARFYAAEVVIG 420
           +   Y  +     +    + L+ + C GG +  L+     +  R  E    +   E ++G
Sbjct: 77  VVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMG 136

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L++LH    I+RD+K  NILL  +G V L DF +S
Sbjct: 137 LQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVS 171

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 15/157 (9%)

Query: 308 FKPIKPLGCGDTGSVHLV----ELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL- 362
            K I+ LG G  G V L     E    GE  A+K+++     N    H A +++EI  L 
Sbjct: 6   LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN----HIADLKKEIEILR 61

Query: 363 -LDHPFLPTLYASFQTS---THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
            L H  +   Y    T      I LI +F P G L   L +   KI  +   + YA ++ 
Sbjct: 62  NLYHENI-VKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLK-YAVQIC 119

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G++YL     ++RDL   N+L++ +  V + DF L+
Sbjct: 120 KGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLT 156

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 306 HHFKPIKPLGCGDTGSVHLV-ELQGAGELYAMKAM-----EKSVMLNRNKVHRACIEREI 359
             ++ +  +G G  G V    +L+  G   A+K +     E+ + L+   +    + R +
Sbjct: 1   QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLS--TIREVAVLRHL 58

Query: 360 MSLLDHPFLPTLYASFQTS-----THICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
            +  +HP +  L+     S     T + L+ +     +L   LDK P      ++ +   
Sbjct: 59  ETF-EHPNVVRLFDVCTVSRTDRETKLTLVFEHV-DQDLTTYLDKVPEPGVPTETIKDMM 116

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
            +++ GL++LH   +++RDLKP+NIL+   G + L DF L+ + S
Sbjct: 117 FQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYS 161

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 19/109 (17%)

Query: 357 REIM---SLLDHPFLPTLYASF--QTSTHICLI-----TDFCPGGELFALLDKQPMKIFR 406
           REIM    L DHP +  L      +    I L+     TD      L A++      I  
Sbjct: 55  REIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYMETD------LHAVIRA---NILE 105

Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +   R+   +++  L+Y+H   +I+RDLKP NILL  D  V L DF L+
Sbjct: 106 DVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLA 154

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 74

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 75  HKNIISLLNVFTPQK---SLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 131

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 132 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 166

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E +IM  L H  L  LYA       I ++T++   G L   L     K  R       AA
Sbjct: 51  EAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAA 110

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDFDLS 455
           ++  G+ YL     I+RDL   NIL+  +  V  + DF L+
Sbjct: 111 QIAEGMAYLESRNYIHRDLAARNILV-GENLVCKIADFGLA 150

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             ED  ++   +++ GL+Y+H  GII+RDLKP N+ + +D  + + DF L+
Sbjct: 114 LSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLA 164

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 21/163 (12%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 19  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 75

Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 76  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 128

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T 
Sbjct: 129 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD 171

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM 457
            +EY+H  G+++RDLKP+NILL   G VV+ D+  +  
Sbjct: 125 TIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIF 162

Length = 932

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           ED  +F   +++ GL+Y+H  GII+RDLKP N+ + +D  + + DF L+  T
Sbjct: 117 EDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQT 168

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 7/97 (7%)

Query: 359 IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           ++ LLD  F P    S +    + L+T+   G +L  ++  Q +    ++  +F   +++
Sbjct: 76  VIGLLD-VFTPA--TSIENFNEVYLVTNLM-GADLNNIVKCQKLS---DEHVQFLIYQLL 128

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            GL+Y+H  GII+RDLKP N+ + +D  + + DF L+
Sbjct: 129 RGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLA 165

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 8/152 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE----REIMSLL 363
            K +K LG G  G+V+       GE   +    K  +LN     +A +E      IM+ +
Sbjct: 9   LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIK--ILNETTGPKANVEFMDEALIMASM 66

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           DHP L  L     + T I L+T   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 67  DHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLDYVHEHKDNIGSQLLLN-WCVQIAKGMMY 124

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L    +++RDL   N+L++   HV +TDF L+
Sbjct: 125 LEERRLVHRDLAARNVLVKSPNHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 331 GELYAMKAMEKSVMLNRNK-VHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCP 389
           G     K + K VMLN  +    A  E   ++  DH  +   +  F++   + LI ++  
Sbjct: 89  GSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGS 148

Query: 390 GGELFALLDKQPMK---IFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH 446
           GG+L   + KQ +K    F+E        ++V+ L+ +H   +++RDLK  NI L   G 
Sbjct: 149 GGDLNKQI-KQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGI 207

Query: 447 VVLTDFDLS 455
           + L DF  S
Sbjct: 208 IKLGDFGFS 216

Length = 478

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 31/173 (17%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMK---AMEKSVML-----------NRNKVHRACIEREI 359
           LG G  G VHL E+    +L  ++    + K   L           N+N  +    E +I
Sbjct: 13  LGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKI 72

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL------FALLDKQ-----------PM 402
           +S L  P +  L         +C+IT++   G+L        L DK+            +
Sbjct: 73  LSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCL 132

Query: 403 KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                 S    A ++  G++YL  L  ++RDL   N L+ ++  + + DF +S
Sbjct: 133 PAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMS 185

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 27/170 (15%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           + PIKP+G G  G V   +     E  A+K +      NR    R   E +++  LDH  
Sbjct: 7   YVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIAN-AFDNRIDAKRTLREIKLLRHLDHEN 65

Query: 368 L--------PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR------EDSARFY 413
           +        P    +F     + ++ +         L+D    +I R      +D  +++
Sbjct: 66  VIAIKDIMPPPHREAFND---VYIVYE---------LMDTDLHQIIRSSQTLSDDHCQYF 113

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQ 463
             +++ GL+Y+H   +++RDLKP N+LL  +  + + DF L+  TS K  
Sbjct: 114 LYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGD 163

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 35/189 (18%)

Query: 287 NSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELY-AMKAMEKSVML 345
           ++S I I+K+ G+GE               G+  S  L +L G  E+  A+K ++     
Sbjct: 2   DASCIKIEKVIGAGE--------------FGEVCSGRL-KLPGKREIPVAIKTLKAGYT- 45

Query: 346 NRNKVHRACI-EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI 404
              K  R  + E  IM   DHP +  L      S  + ++T++   G L A L       
Sbjct: 46  --EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFL------- 96

Query: 405 FREDSARFYAAEVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM 457
            R+   +F   ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +
Sbjct: 97  -RKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRV 155

Query: 458 TSCKPQVFY 466
               P+  Y
Sbjct: 156 LEDDPEAAY 164

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 314 LGCGDTGSVH--LVELQGAGELYAMKAM----EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           LG G+ G V   + +++      A+K +    EKSV   R+++ R   E EIM  LD+P+
Sbjct: 3   LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSV---RDEMMR---EAEIMHQLDNPY 56

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  +    +    + L+ +   GG L   L  +  +I   +       +V +G++YL   
Sbjct: 57  IVRMIGVCEAEA-LMLVMEMASGGPLNKFLSGKKDEITVSNVVELMH-QVSMGMKYLEGK 114

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
             ++RDL   N+LL    +  ++DF LS
Sbjct: 115 NFVHRDLAARNVLLVNQHYAKISDFGLS 142

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDFDLS 455
             + + +  +++ G+ + H  G+++RDLKP+N+L+ K   ++ + D  L 
Sbjct: 109 AKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLG 158

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 357 REIMSLL---DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFY 413
           REI SLL   +HP +  L     +   + L+ +F    +L   +D  P+        + Y
Sbjct: 47  REI-SLLKELNHPNIVRLLDVVHSENKLYLVFEFL-DLDLKKYMDSSPLTGLDPPLIKSY 104

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
             +++ G+ Y H   +++RDLKP+N+L+ ++G + L DF L
Sbjct: 105 LYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGL 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 19/149 (12%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +  IK L  G  G V +    G  +   +K  +K   L         IE  ++  ++HP 
Sbjct: 68  YTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTTL---------IEAMLLQNVNHPS 118

Query: 368 LPTLYASFQTSTHICLITDFCP--GGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEY 423
           +  +  +  +    C++    P    +L+  L K+  P+ I   D A     +++ GL Y
Sbjct: 119 VIRMKDTLVSGAITCMVL---PHYSSDLYTYLTKRSRPLPI---DQALIIEKQILEGLRY 172

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           LH   II+RD+K ENI +     V + D 
Sbjct: 173 LHAQRIIHRDVKTENIFINDVDQVCIGDL 201

Length = 357

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLP 369
           K LG G  G V+L      G   A K ++            + +E EI  L  L H  + 
Sbjct: 8   KLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIV 67

Query: 370 TLYASFQTSTH--ICLITDFCPGGELFALLDKQPMKIF---REDSARFYAAEVVIGLEYL 424
             Y   +      + +  ++ PGG +     K  +K +    E   R Y  +++ G+ YL
Sbjct: 68  QYYGCLRDRAEKTLTIFMEYMPGGSV-----KDQLKAYGALTESVTRKYTRQILEGMSYL 122

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H   I++RD+K  NIL    G+V L DF  S
Sbjct: 123 HSNMIVHRDIKGANILRDSAGNVKLGDFGAS 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 414 AAEVVIGLEYL-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           A   V  L YL   L II+RD+KP NILL ++G++ L DF +S
Sbjct: 113 AVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGIS 155

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +      A+K +++  M    +V     E  +M  + HP L  L  
Sbjct: 14  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM----EVEEFLKEAAVMKEIKHPNLVQLLG 69

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 70  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 129

Query: 434 LKPENILLQKDGHVVLTDFDLS-FMT 458
           L   N L+ ++  V + DF LS  MT
Sbjct: 130 LAARNCLVGENHLVKVADFGLSRLMT 155

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E ++M  L H  L  LYA   +   I ++T++   G L   L  +  K  R       AA
Sbjct: 51  EAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAA 109

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++  G+ Y+  +  ++RDL+  NIL+ ++    + DF L+
Sbjct: 110 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLA 149

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 30/100 (30%), Positives = 45/100 (45%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E +IM  L HP L  LYA       I ++T+    G L   L     +  +       AA
Sbjct: 51  EAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAA 110

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V  G+ YL     I+RDL   N+L+ ++    + DF L+
Sbjct: 111 QVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLA 150

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           L YLH  GII+RD+K ENI L +  + VL DF
Sbjct: 198 LAYLHGRGIIHRDVKTENIFLDEPENAVLGDF 229

Length = 392

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 8/155 (5%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 81

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  +  L   F     +    D      +  L+D    ++ +     +   +   +++ G
Sbjct: 82  HKNIIGLLNVFTPQKSLEEFQDVYI---VMELMDANLCQVIQMELDHERMSYLLYQMLCG 138

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 139 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 5/147 (3%)

Query: 309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           K +K LG G  G V +     + ++ A+K ++   M     V     E  +M  L H  L
Sbjct: 9   KLVKKLGAGQFGEVWMGYYNNSTKV-AVKTLKPGTM----SVQAFLEEANLMKTLQHDKL 63

Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
             LYA       I +IT++   G L   L               ++A++  G+ Y+    
Sbjct: 64  VRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN 123

Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
            I+RDL+  N+L+ +     + DF L+
Sbjct: 124 YIHRDLRAANVLVSESLMCKIADFGLA 150

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE-------IMSLL- 363
           K LG G  G V  VE    G   +   M+ +V + +   H +  ERE       IMS L 
Sbjct: 41  KTLGAGAFGKV--VEATAYGLSKSDAVMKVAVKMLKPTAHSS--EREALMSELKIMSHLG 96

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +H  +  L  +      I +IT++C  G+L   L ++       +    ++ +V  G+ +
Sbjct: 97  NHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAF 156

Query: 424 LHCLGIIYRDLKPENILLQKDGHVV-LTDFDLS 455
           L     I+RDL   N+LL   G +V + DF L+
Sbjct: 157 LASKNCIHRDLAARNVLLT-HGKIVKICDFGLA 188

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           REI  L  L H  +  LY    +   + L+ ++C   +L    D     I  E   + + 
Sbjct: 48  REICLLKELKHKNIVRLYDVLHSDKKLTLVFEYC-DQDLKKYFDSCNGDIDPE-IVKSFM 105

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++ GL + H   +++RDLKP+N+L+ K+G + L DF L+
Sbjct: 106 FQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 16/158 (10%)

Query: 312 KPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           K LG G+ GSV   +L    G+    A+K M K  +   +++     E   M   DHP +
Sbjct: 5   KILGEGEFGSVMEGQLSQDDGSQLKVAVKTM-KLDIHTYSEIEEFLSEAACMKDFDHPNV 63

Query: 369 PTLYA-SFQTSTH-----ICLITDFCPGGELFALL-----DKQPMKIFREDSARFYAAEV 417
             L    F+ S+        +I  F   G+L + L        P K+  +   +F   ++
Sbjct: 64  MKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKF-MVDI 122

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +G+EYL     I+RDL   N +L++D  V + DF LS
Sbjct: 123 ALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLS 160

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 18/127 (14%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRED------- 408
           E  ++  L H  + TL+    T   + L+         F  LDK  +K + +D       
Sbjct: 54  EVSLLKDLKHANIVTLHDIVHTDKSLTLV---------FEYLDKD-LKQYMDDCGNIMSM 103

Query: 409 -SARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
            + + +  +++ GL Y H   +++RDLKP+N+L+ + G + L DF L+   S   + + +
Sbjct: 104 HNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSN 163

Query: 468 AHVNGFY 474
             V  +Y
Sbjct: 164 EVVTLWY 170

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 6/147 (4%)

Query: 309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           K +K LG G  G V +    G  ++ A+K++++  M           E  +M  L HP L
Sbjct: 9   KLVKKLGAGQFGEVWMGYYNGHTKV-AIKSLKQGSM----SPEAFLAEANLMKQLQHPRL 63

Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
             LYA   T   I +IT++   G L   L          +     AA++  G+ ++    
Sbjct: 64  VRLYAVV-TQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKN 122

Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
            I+RDL+  NIL+ +     + DF L+
Sbjct: 123 YIHRDLRAANILVSETLCCKIADFGLA 149

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 6/46 (13%)

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL------SFMTS 459
           G+++LH  GII+RDLKP NI+++ D  + + DF L      SFM +
Sbjct: 130 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT 175

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 21/159 (13%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRA---------CIERE 358
            +P +P+G G  G V  V     G+  A+K M   V  N     R               
Sbjct: 2   VEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPN-VFQNLVSCKRVFRELKMLCFFKHDN 60

Query: 359 IMSLLD--HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           ++S LD   P     +        I ++T+         ++  QP+     D  + +  +
Sbjct: 61  VLSALDILQPPHIDPF------EEIYVVTELMQSDLHKIIVSPQPLS---SDHVKVFLYQ 111

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+YLH  GI++RD+KP N+L+  +  + + DF L+
Sbjct: 112 ILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLA 150

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 16/156 (10%)

Query: 314 LGCGDTGSVHLVELQ---GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           LG G+ GSV   +L+   G+ +  A+K M K+ + + + +     E   M   DHP +  
Sbjct: 7   LGKGEFGSVREAQLKSEDGSFQKVAVK-MLKADIFSSSDIEEFLREAACMKEFDHPNVIK 65

Query: 371 LYA-SFQTSTHICL-----ITDFCPGGELFALL-----DKQPMKIFREDSARFYAAEVVI 419
           L   S ++     L     I  F   G+L   L      ++P  +  +   RF   ++  
Sbjct: 66  LIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRF-MIDIAS 124

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           G+EYL     I+RDL   N +L ++  V + DF LS
Sbjct: 125 GMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLS 160

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 9/165 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGE----LYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            K +K LG G  G+V+       GE      A+K + ++     NK      E  +M+ +
Sbjct: 9   LKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANK--EILDEAYVMAGV 66

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
             P++  L     TST + L+T   P G L   + +   +I  +D    +  ++  G+ Y
Sbjct: 67  GSPYVCRLLGICLTST-VQLVTQLMPYGCLLDYVRENKDRIGSQDLLN-WCVQIAKGMSY 124

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L  + +++RDL   N+L++   HV +TDF L+ +     +  YHA
Sbjct: 125 LEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDID-ETEYHA 168

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 29/100 (29%), Positives = 45/100 (45%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E + +  L H  L +L+A       + +IT+    G L A L     ++    S    A 
Sbjct: 52  EVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMAC 111

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V  G+ YL     I+RDL   NIL+ +D    + DF L+
Sbjct: 112 QVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLA 151

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 26/117 (22%)

Query: 364 DHPFLPTLYASFQTSTHIC-----------LITDFCPGGELFALLDKQPMKIFRE----- 407
           D P      A F+  T +C           L +   P G LFA+ +  P +  RE     
Sbjct: 14  DAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPPGLLFAVFEYVPGRTLREVLAAD 73

Query: 408 ------DSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---HVVLTDFDLS 455
                 ++ R    +V+  L   H  GI++RDLKP+NI++ + G   H  + DF + 
Sbjct: 74  GALPAGETGRL-MLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIG 129

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V        G   A+K + +    N+    RA  E  ++  ++
Sbjct: 20  LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQ-NQTHAKRAYRELVLLKCVN 78

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRED----SARFYAAEVVIG 420
           H  + +L   F     +    +F     +  L+D    ++   +       +   +++ G
Sbjct: 79  HKNIISLLNVFTPQKSL---EEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCG 135

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 136 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 170

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  I+   DHP +  L         I ++ +  PGG+  + L K+  ++  +   +F A 
Sbjct: 42  EARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKF-AL 100

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +   G+ YL     I+RDL   N L+ ++  + ++DF +S
Sbjct: 101 DAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMS 140

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 6/145 (4%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           IK LG G  G V +    G  ++ A+K ++   M   + +  A    +IM  L H  L  
Sbjct: 11  IKKLGNGQFGEVWMGTWNGNTKV-AVKTLKPGTMSPESFLEEA----QIMKKLRHDKLVQ 65

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LYA   +   I ++T++   G L   L     +  +  +    AA+V  G+ Y+  +  I
Sbjct: 66  LYAVV-SEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYI 124

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL+  NIL+       + DF L+
Sbjct: 125 HRDLRSANILVGDGLVCKIADFGLA 149

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHV 470
           R +  +++ GL Y+H   I++RDLKP+N+L+   G + L DF L+   S   Q +    V
Sbjct: 106 RLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVV 165

Query: 471 NGFY 474
             +Y
Sbjct: 166 TLWY 169

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTD 451
           +L  LL+   +  F ED  + +  +++ GL Y H    ++RD+K  NILL   G + L D
Sbjct: 101 DLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLAD 159

Query: 452 FDLS 455
           F L+
Sbjct: 160 FGLA 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 15/103 (14%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLI-----TD-FCPGGELFALLDKQPMKIFREDS 409
           E  I+  ++HP +  L  +F  +   CLI     TD +C       L  K+ + I    +
Sbjct: 133 EAHILRAINHPSIIQLKGTFTYNKFTCLILPRYKTDLYC------YLAAKRNIAICDILA 186

Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
                  V+  ++YLH   II+RD+K ENI +   G V L DF
Sbjct: 187 IE---RSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDF 226

Length = 391

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 18/127 (14%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRED------- 408
           E  ++  L H  + TL+    T   + L+         F  LDK  +K + +D       
Sbjct: 54  EVSLLKDLKHANIVTLHDIIHTEKSLTLV---------FEYLDKD-LKQYLDDCGNSINM 103

Query: 409 -SARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
            + + +  +++ GL Y H   +++RDLKP+N+L+ + G + L DF L+   S   + + +
Sbjct: 104 HNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSN 163

Query: 468 AHVNGFY 474
             V  +Y
Sbjct: 164 EVVTLWY 170

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 6/142 (4%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G  ++ A+K ++   M+    +  A    +IM  L H  L  LYA
Sbjct: 14  LGQGCFGEVWMGTWNGTTKV-AIKTLKPGTMMPEAFLQEA----QIMKKLRHDKLVPLYA 68

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T+F   G L   L +   K  +       AA++  G+ Y+  +  I+RD
Sbjct: 69  VV-SEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRD 127

Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+  +    + DF L+
Sbjct: 128 LRAANILVGDNLVCKIADFGLA 149

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLP 369
           K LG G  G V+L      G   A+K ++              +E EI  L  L H  + 
Sbjct: 8   KLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIV 67

Query: 370 TLYASFQTSTH--ICLITDFCPGGELFALLDKQPMKIF---REDSARFYAAEVVIGLEYL 424
             Y   +      + +  +  PGG +     K  +K +    E+  R Y  +++ G+ YL
Sbjct: 68  QYYGCLRDPMERTLSIFMEHMPGGSI-----KDQLKSYGALTENVTRKYTRQILEGVSYL 122

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H   I++RD+K  NIL    G+V L DF  S
Sbjct: 123 HSNMIVHRDIKGANILRDSVGNVKLGDFGAS 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALL---------DKQPMKIFREDSARFY 413
           L+HP +         S    L+ +FCP G+L   L           Q   + R       
Sbjct: 52  LNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQR------M 105

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF 456
           A EV  GL +LH    I+ DL   N  L  D  V + D+ L+ 
Sbjct: 106 ACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLAL 148

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 20/66 (30%), Positives = 38/66 (57%)

Query: 409 SARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           + + +  +++ GL Y H   I++RDLKP+N+L+ + G + L DF L+   S   + + + 
Sbjct: 104 NVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNE 163

Query: 469 HVNGFY 474
            V  +Y
Sbjct: 164 VVTLWY 169

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 15/45 (33%), Positives = 30/45 (66%)

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +  +++ GL+Y+H   +++RDLKP N+L+  D  + + DF L+
Sbjct: 108 QSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLA 152

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 42.0 bits (98), Expect = 8e-04
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 14/149 (9%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L+ ++ IK +G G  G V LV+ +   E +  KA+    +  R K  +  IE  +M  L 
Sbjct: 12  LNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREK-SQLVIEVNVMRELK 70

Query: 365 HPFLPTLYASF--QTSTHICLITDFCPGGELFALLDKQPMKIF---REDSARFYAAEVVI 419
           H  +      F  + +  + ++ +FC  G+L   + K   K+F    E +      +++ 
Sbjct: 71  HKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQK-CYKMFGKIEEHAIVDITRQLLH 129

Query: 420 GLEYLHCLG-------IIYRDLKPENILL 441
            L Y H L        +++RDLKP+NI L
Sbjct: 130 ALAYCHNLKDGPNGERVLHRDLKPQNIFL 158

Length = 1021

>gnl|CDD|232884 TIGR00229, sensory_box, PAS domain S-box

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 42/137 (30%)

Query: 92  IIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYG 151
           I++ + +F E+  Y+ EE++GRN   L   E  REE+  R                    
Sbjct: 25  ILYVNPAFEEIFGYSAEELIGRNVLELIPEED-REEVRER-------------------- 63

Query: 152 VYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKG 211
                +   LE           R+ V E+R +        K G + W    + P+R + G
Sbjct: 64  -----IERRLE---------GEREPVSEERRV------RRKDGSEIWVEVSVSPIRTNGG 103

Query: 212 ELQYFIGVQLDGSDHVE 228
           EL   +G+  D ++  +
Sbjct: 104 EL-GVVGIVRDITERKQ 119

The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator [Regulatory functions, Small molecule interactions]. Length = 124

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-FMTSCKPQVFYH 467
           A +++  ++Y+H  GII+RD+K EN+L+     + L DF  + F        F++
Sbjct: 266 ARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHY 320

Length = 461

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + +IT+F   G L + L        R++  +F   
Sbjct: 55  EASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFL--------RQNDGQFTVI 106

Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++V        G++YL  +  ++RDL   NIL+  +    ++DF LS
Sbjct: 107 QLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLS 153

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 47/150 (31%)

Query: 92  IIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYG 151
           I++A+D+F  +T YT+EEI+G+N S L       E               + ALW     
Sbjct: 26  ILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPE--------------VYQALWGS--- 68

Query: 152 VYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKG 211
                                    + EQ+    +L+N  K G+ +     + P+ +  G
Sbjct: 69  -------------------------LAEQKPWAGKLLNRRKDGELYLAELTVAPVLNEAG 103

Query: 212 ELQYFIGVQLDGSDHVEPLRNRLSEKTEQQ 241
           E  +F+G+  D ++      +RL +    Q
Sbjct: 104 ETTHFLGMHRDITE-----LHRLEQVVANQ 128

NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, Protein interactions]. Length = 494

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML---NRNKVHRACIEREIMSLLDHPFL 368
           K LG G+ GSV  +E Q   +   +K   K++ +    R+++     E   M   DHP +
Sbjct: 5   KTLGEGEFGSV--MEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNV 62

Query: 369 PTLYA-SFQTSTH-----ICLITDFCPGGEL-----FALLDKQPMKIFREDSARFYAAEV 417
             L     QT          +I  F   G+L     ++ L   P  +  +   +F   ++
Sbjct: 63  MRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKF-MTDI 121

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             G+EYL     I+RDL   N +L ++ +V + DF LS
Sbjct: 122 ASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLS 159

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 21/163 (12%)

Query: 311 IKPLGCGDTGSVHLVEL-----QGAGELYAMKAM-EKSVMLNRNKVHRACIEREIMSLLD 364
            + LG G  G V L E      +   EL A+K + E +    R    R   E E+++   
Sbjct: 10  KRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFER---EAELLTNFQ 66

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGEL------------FALLDKQPMKIFREDSARF 412
           H  +   Y          ++ ++   G+L            F      PM          
Sbjct: 67  HENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQ 126

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            A ++  G+ YL     ++RDL   N L+  D  V + DF +S
Sbjct: 127 IAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMS 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase adapter protein beta

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 321 SVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE-IMS-LLDHPFLPTLYASFQTS 378
           SV+L      G L  ++  +   + N  + H   ++ E ++S    HP + T +  F T 
Sbjct: 15  SVYLARHTPTGTLVTVRITD---LENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTG 71

Query: 379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPEN 438
           + + +I+ F   G   +LL     +   E          + GL YLH  G I+R++K  +
Sbjct: 72  SWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASH 131

Query: 439 ILLQKDGHVVLT 450
           IL+  DG V L+
Sbjct: 132 ILISGDGLVSLS 143

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. STRAD-beta is also referred to as ALS2CR2 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein), since the human gene encoding it is located within the juvenile ALS2 critical region on chromosome 2q33-q34. It is not linked to the development of ALS2. Length = 328

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           GL Y H   +++RDLKP+N+L+ + G + L DF L+   S   + + +  V  +Y
Sbjct: 115 GLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWY 169

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related kinase adapter protein alpha

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 315 GCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYAS 374
           G  D  +V+L   +  GE   ++ +      N         E  +  L +HP +    A+
Sbjct: 9   GFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQG-ELHVSKLFNHPNIVPYRAT 67

Query: 375 FQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDL 434
           F     + ++T F   G    L+    M    E +  +    V+  L+Y+H +G ++R +
Sbjct: 68  FIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSV 127

Query: 435 KPENILLQKDGHVVLT 450
           K  +IL+  DG V L+
Sbjct: 128 KASHILISVDGKVYLS 143

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha, stabilized through ATP and MO25, may be needed to activate LKB1. A mutation which results in a truncation of a C-terminal part of the human STRAD-alpha pseudokinase domain and disrupts its association with LKB1, leads to PMSE (polyhydramnios, megalencephaly, symptomatic epilepsy) syndrome. Several splice variants of STRAD-alpha exist which exhibit different effects on the localization and activation of LKB1. Length = 327

>gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 45/143 (31%)

Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            ++ D    D  I++A+ +  +L  Y+ EE++G++     L +    E            
Sbjct: 5   VIVLDL---DGRILYANPAAEQLLGYSPEELIGKS-----LLDLIHPEDR---------- 46

Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                      +    ++ + +     +T+++    K G   W 
Sbjct: 47  ---------------------------EELRERLENLLSGGEPVTLEVRLRRKDGSVIWV 79

Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
           L  L P+RD  GE+   +GV  D
Sbjct: 80  LVSLTPIRDEGGEVIGLLGVVRD 102

Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. Length = 103

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 16/149 (10%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K LG G  G V +       ++ A+K M+   M     V     E  +M  L H  L  L
Sbjct: 12  KKLGAGQFGEVWMATYNKHTKV-AVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKL 66

Query: 372 YASFQTSTHICLITDFCPGGELFALL-----DKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +A   T   I +IT+F   G L   L      KQP+    +     ++A++  G+ ++  
Sbjct: 67  HAVV-TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLID-----FSAQIAEGMAFIEQ 120

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I+RDL+  NIL+       + DF L+
Sbjct: 121 RNYIHRDLRAANILVSASLVCKIADFGLA 149

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 16/45 (35%), Positives = 29/45 (64%)

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +F+  +++  L+Y+H   + +RDLKP+NIL   D  + + DF L+
Sbjct: 106 QFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLA 150

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GL+Y+H   +++RDLKP N+LL  +  + + DF L+
Sbjct: 118 GLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLA 153

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNG 472
           Y  +++ G+ + H   +++RDLKP+N+L+   G + L DF L+       +V+ H  V  
Sbjct: 106 YLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTL 165

Query: 473 FY 474
           +Y
Sbjct: 166 WY 167

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 25/154 (16%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDH--P 366
           IK L  G T  V+L+  +     Y +K       +N ++   A  ERE  I+ LL     
Sbjct: 3   IKLLKGGLTNRVYLLGTKDED--YVLK-------INPSREKGADREREVAILQLLARKGL 53

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +P + AS ++     L+ ++  G  L  + +++   I  +       AE+   L  LH 
Sbjct: 54  PVPKVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDIAEQ------LAEL---LAKLHQ 104

Query: 427 L---GIIYRDLKPENILLQKDGHVVLTDFDLSFM 457
           L    + + DL P NIL+     + + D++ +  
Sbjct: 105 LPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY 138

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 37/174 (21%)

Query: 312 KPLGCGDTGSVHLVELQGAGE----------------LYAMKAMEKSVMLNRNKVHRACI 355
           + LG G  G VHL E  G  +                L A+K +        +   R   
Sbjct: 11  EKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDA----SDNAREDF 66

Query: 356 ERE--IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFY 413
            +E  I+S L  P +  L         +C+I ++   G+L   L K    +         
Sbjct: 67  LKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKH---VAETSGLACN 123

Query: 414 ------------AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                       A ++  G+ YL  L  ++RDL   N L+ K+  + + DF +S
Sbjct: 124 SKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMS 177

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	489
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.98
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.98
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.97
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.97
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.97
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.97
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.97
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.97
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.97
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.97
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.97
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.97
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.97
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.97
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.97
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.97
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.97
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.97
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.97
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.97
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.97
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.97
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.97
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.97
KOG0198	313	consensus MEKK and related serine/threonine protei	99.97
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.97
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.97
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.97
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.97
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.97
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.96
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.96
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.96
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.96
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.96
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.96
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.96
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.96
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.96
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.96
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.96
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.96
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.96
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.96
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.96
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.96
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.96
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.96
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.96
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.96
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.96
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.96
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.96
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.96
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.96
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.96
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.96
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.96
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.96
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.96
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.96
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.96
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.96
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.96
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.96
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.95
KOG0589	426	consensus Serine/threonine protein kinase [General	99.95
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.95
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.95
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.95
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.95
KOG0578	550	consensus p21-activated serine/threonine protein k	99.95
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.95
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.95
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.95
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.95
PHA03212	391	serine/threonine kinase US3; Provisional	99.95
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.95
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.95
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.95
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.95
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.95
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.95
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.95
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.95
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.95
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.95
PTZ00267	478	NIMA-related protein kinase; Provisional	99.95
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.95
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.95
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.95
KOG0586	596	consensus Serine/threonine protein kinase [General	99.95
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.95
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.95
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.95
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.95
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.95
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.95
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.95
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.95
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.95
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.95
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.95
PHA02988	283	hypothetical protein; Provisional	99.95
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.95
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.95
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.95
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.94
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.94
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.94
PTZ00283	496	serine/threonine protein kinase; Provisional	99.94
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.94
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.94
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.94
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.94
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.94
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.94
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.94
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.94
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.94
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.94
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.94
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.94
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.94
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.94
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.94
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.94
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.94
PTZ00036	440	glycogen synthase kinase; Provisional	99.94
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.94
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.94
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.94
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.94
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.94
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.94
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.94
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.94
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.94
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.94
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.94
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.94
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.94
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.94
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.94
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.94
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.94
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.94
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.94
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.94
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.94
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.94
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.94
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.94
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.94
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.94
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.94
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.94
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.94
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.94
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.94
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.94
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.94
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.94
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.94
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.94
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.94
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.94
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.94
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.94
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.94
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.94
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.94
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.94
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.94
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.94
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.94
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.94
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.94
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.94
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.94
PHA03207	392	serine/threonine kinase US3; Provisional	99.94
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.94
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.94
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.94
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.94
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.94
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.94
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.94
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.94
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.94
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.94
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.94
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.94
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.93
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.93
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.93
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.93
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.93
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.93
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.93
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.93
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.93
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.93
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.93
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.93
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.93
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.93
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.93
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.93
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.93
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.93
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.93
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.93
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.93
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.93
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.93
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.93
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.93
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.93
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.93
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.93
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.93
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.93
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.93
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.93
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.93
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.93
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.93
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.93
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.93
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.93
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.93
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.93
PTZ00284	467	protein kinase; Provisional	99.93
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.93
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.93
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.93
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.93
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.93
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.93
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.93
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.93
PLN00009	294	cyclin-dependent kinase A; Provisional	99.93
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.93
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.93
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.93
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.93
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.93
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.93
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.93
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.93
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.93
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.93
PHA03209	357	serine/threonine kinase US3; Provisional	99.93
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.93
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.93
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.93
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.93
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.93
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.93
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.93
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.93
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.93
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.93
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.93
PHA03211	461	serine/threonine kinase US3; Provisional	99.93
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.93
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.93
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.93
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.93
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.93
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.93
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.93
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.93
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.93
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.93
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.93
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.93
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.93
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.93
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.93
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.93
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.93
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.93
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.93
KOG1152	772	consensus Signal transduction serine/threonine kin	99.93
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.93
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.92
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.92
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.92
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.92
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.92
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.92
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.92
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.92
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.92
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.92
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.92
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.92
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.92
PHA03210	501	serine/threonine kinase US3; Provisional	99.92
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.92
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.92
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.92
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.92
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.92
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.92
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.92
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.92
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.92
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.92
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.92
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.92
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.92
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.92
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.92
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.92
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.92
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.92
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.92
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.92
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.92
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.92
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.92
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.92
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.92
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.92
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.92
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.92
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.92
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.92
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.92
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.91
KOG0584	632	consensus Serine/threonine protein kinase [General	99.91
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.91
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.91
PHA02882	294	putative serine/threonine kinase; Provisional	99.91
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.91
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.91
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.91
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.91
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.91
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.91
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.91
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.91
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.91
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.91
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.91
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.9
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.9
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.9
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.9
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.9
PRK09188	365	serine/threonine protein kinase; Provisional	99.9
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.89
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.89
KOG3653	534	consensus Transforming growth factor beta/activin	99.89
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.89
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.89
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.88
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.88
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.88
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.88
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.88
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.87
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.87
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.87
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.86
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.86
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.86
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.86
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.84
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.83
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.83
PRK10345	210	hypothetical protein; Provisional	99.82
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.82
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.82
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.82
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.81
smart00090	237	RIO RIO-like kinase.	99.79
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.78
PRK14879	211	serine/threonine protein kinase; Provisional	99.78
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.76
PRK12274	218	serine/threonine protein kinase; Provisional	99.75
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.75
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.74
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.74
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.73
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.73
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.72
PF13426	104	PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_	99.72
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.71
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.7
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.66
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.63
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.62
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.61
PLN00181	793	protein SPA1-RELATED; Provisional	99.56
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.52
PRK13557	540	histidine kinase; Provisional	99.52
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.51
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.49
PRK13559	361	hypothetical protein; Provisional	99.48
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.48
PF08448	110	PAS_4: PAS fold; InterPro: IPR013656 The PAS fold	99.47
PF00989	113	PAS: PAS fold; InterPro: IPR013767 PAS domains are	99.46
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	99.44
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.37
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.36
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.28
PRK11091	779	aerobic respiration control sensor protein ArcB; P	99.27
TIGR02040	442	PpsR-CrtJ transcriptional regulator PpsR. This mod	99.26
PRK13558	665	bacterio-opsin activator; Provisional	99.25
PRK13560	807	hypothetical protein; Provisional	99.24
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.24
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.21
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.2
TIGR02938	494	nifL_nitrog nitrogen fixation negative regulator N	99.2
PRK10060	663	RNase II stability modulator; Provisional	99.19
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.19
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.18
KOG3087	229	consensus Serine/threonine protein kinase [General	99.16
PRK11359	799	cyclic-di-GMP phosphodiesterase; Provisional	99.13
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.1
PRK09776	1092	putative diguanylate cyclase; Provisional	99.1
PRK09776	1092	putative diguanylate cyclase; Provisional	99.06
TIGR00229	124	sensory_box PAS domain S-box. The PAS domain was p	99.06
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.99
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.98
KOG1243	690	consensus Protein kinase [General function predict	98.96
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.92
PF08447	91	PAS_3: PAS fold; InterPro: IPR013655 The PAS fold	98.9
PRK13560	807	hypothetical protein; Provisional	98.89
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.88
cd00130	103	PAS PAS domain; PAS motifs appear in archaea, euba	98.83
PRK11073	348	glnL nitrogen regulation protein NR(II); Provision	98.78
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.78
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.72
PRK11360	607	sensory histidine kinase AtoS; Provisional	98.69
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.67
PRK11359	799	cyclic-di-GMP phosphodiesterase; Provisional	98.66
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.66
PRK09902	216	hypothetical protein; Provisional	98.63
TIGR02966	333	phoR_proteo phosphate regulon sensor kinase PhoR.	98.62
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.59
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.55
TIGR02040	442	PpsR-CrtJ transcriptional regulator PpsR. This mod	98.51
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	98.43
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.38
KOG1229	775	consensus 3'5'-cyclic nucleotide phosphodiesterase	98.34
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.3
PF13596	106	PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.	98.27
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.26
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.26
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.25
TIGR02938	494	nifL_nitrog nitrogen fixation negative regulator N	98.18
PF12860	115	PAS_7: PAS fold	98.18
PF01636	239	APH: Phosphotransferase enzyme family This family	98.13
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.12
COG2202	232	AtoS FOG: PAS/PAC domain [Signal transduction mech	98.06
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.03
PRK11006	430	phoR phosphate regulon sensor protein; Provisional	98.02
COG5002	459	VicK Signal transduction histidine kinase [Signal	98.0
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	97.97
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.95
PLN02876	822	acyl-CoA dehydrogenase	97.93
KOG1266	458	consensus Protein kinase [Signal transduction mech	97.87
PF14598	111	PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W	97.78
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.75
PRK11086	542	sensory histidine kinase DcuS; Provisional	97.64
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.59
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.58
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	97.54

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-37  Score=304.65  Aligned_cols=184  Identities=41%  Similarity=0.714  Sum_probs=167.7

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ...++|++++.||+|+||+|+.++.+.|++.||+|+++|......+.++....|..||..++||+||.++..|++...+|
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLy  101 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLY  101 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEE
Confidence            45678999999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      +|+||+.||+|+.+|.++  +.++|+.+++++++|+.||.|||++|||||||||+|||||..|+|+|+|||+|+...   
T Consensus       102 lVld~~~GGeLf~hL~~e--g~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~  179 (357)
T KOG0598|consen  102 LVLDYLNGGELFYHLQRE--GRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDG  179 (357)
T ss_pred             EEEeccCCccHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCC
Confidence            999999999999999886  449999999999999999999999999999999999999999999999999996321   


Q ss_pred             ------CC-Ccee-----------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ------CK-PQVF-----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------~~-~~~~-----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            |. +++.           ...|-|++|.++|+|++|..||.
T Consensus       180 ~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~  226 (357)
T KOG0598|consen  180 DATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFY  226 (357)
T ss_pred             CccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCc
Confidence                  11 2222           23477999999999999999996

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=298.70  Aligned_cols=181  Identities=27%  Similarity=0.462  Sum_probs=162.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|...+.||+|+||+||+|.++.++..||||.+.+... ..+.++.+..|+.+|+.++|||||.+++++..++.+|+|
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l-~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV   87 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKL-NKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV   87 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhcc-CHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence            4679999999999999999999999999999999987754 566778888999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC------CcEEEEecCCcccc
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD------GHVVLTDFDLSFMT  458 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~------g~vKL~DFGlS~~~  458 (489)
                      ||||.||+|.+|+.+..  .+++..++.++.||+.||++||+++||||||||+||||+..      -.+||+|||+|+.+
T Consensus        88 MEyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L  165 (429)
T KOG0595|consen   88 MEYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFL  165 (429)
T ss_pred             EEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhC
Confidence            99999999999999874  59999999999999999999999999999999999999865      46899999999865


Q ss_pred             C--------CC------Ccee------ecccccchHHHHHHHHhCCcccC
Q 042772          459 S--------CK------PQVF------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~--------~~------~~~~------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .        |.      |+++      ..+|.|+.|.+++++++|..||.
T Consensus       166 ~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~  215 (429)
T KOG0595|consen  166 QPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFD  215 (429)
T ss_pred             CchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcc
Confidence            4        22      2222      34588999999999999999996

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.6e-35  Score=298.16  Aligned_cols=178  Identities=58%  Similarity=1.026  Sum_probs=169.4

Q ss_pred             CCCCCCCCCchhHHHHhhc-CCCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHH
Q 042772          279 FPRPHKRDNSSWIAIQKIT-GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER  357 (489)
Q Consensus       279 ~p~p~~~~~~s~~~~~~~~-~~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~  357 (489)
                      ...|+...+..|.++..+. ..+..+++.+|++++.||.|.-|+||+|+.++++..+|+|++++..+..++.+.++..|.
T Consensus        49 ~~kph~~~d~~w~a~~~~~~~~~~~l~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~  128 (459)
T KOG0610|consen   49 GNKPHKGNDVRWEAISSIRNSKDGSLGLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTER  128 (459)
T ss_pred             cCCCCCCCchhhhhhccccccCCCccCHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHH
Confidence            4568888888898888776 467788999999999999999999999999999999999999999998899999999999


Q ss_pred             HHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCC
Q 042772          358 EIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPE  437 (489)
Q Consensus       358 ~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~  437 (489)
                      +||+.++||++++||..|+++...|++||||+||+|..++++++.+.+++..+++++++|+.||+|||.+|||+|||||+
T Consensus       129 eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPE  208 (459)
T KOG0610|consen  129 EILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPE  208 (459)
T ss_pred             HHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEecCCcEEEEecCCcc
Q 042772          438 NILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       438 NILld~~g~vKL~DFGlS~  456 (489)
                      ||||.++|+|.|+||.+|.
T Consensus       209 NILvredGHIMLsDFDLS~  227 (459)
T KOG0610|consen  209 NILVREDGHIMLSDFDLSL  227 (459)
T ss_pred             eeEEecCCcEEeeeccccc
Confidence            9999999999999999984

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-36  Score=289.05  Aligned_cols=184  Identities=40%  Similarity=0.752  Sum_probs=167.4

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ..+++|+.++.||.|+||+|.+++.+.+|..||+|++++........++...+|..+|+.+.||+++++++.|.+..++|
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~ly  120 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLY  120 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEE
Confidence            45678999999999999999999999999999999999988878888899999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      +||||++||.|+++|++.  +.+++..++++++||+.||+|||+++|++|||||+|||||.+|++||+|||+|....   
T Consensus       121 mvmeyv~GGElFS~Lrk~--~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT  198 (355)
T KOG0616|consen  121 MVMEYVPGGELFSYLRKS--GRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRT  198 (355)
T ss_pred             EEEeccCCccHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCcE
Confidence            999999999999999986  449999999999999999999999999999999999999999999999999996433   


Q ss_pred             ----CCCceeecc-----------cccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQVFYHA-----------HVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~~~~~~-----------~v~s~g~~a~e~~~G~lpY~  488 (489)
                          ..|+++.++           |-|++|...|||+.|..||-
T Consensus       199 ~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~  242 (355)
T KOG0616|consen  199 WTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFY  242 (355)
T ss_pred             EEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCc
Confidence                234444333           66888999999999999984

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=304.05  Aligned_cols=155  Identities=41%  Similarity=0.746  Sum_probs=149.2

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ...++.++|.++++||+|+||.||+|+.+.||..+|+|+++++.+...+.+..++.|..+|...++|+||++|.+|++..
T Consensus       135 R~r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~  214 (550)
T KOG0605|consen  135 RTRLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKE  214 (550)
T ss_pred             cccCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCC
Confidence            33668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      ++||||||+|||++..+|.+.  ++|+++.+++++++++.|++.||+.|+|||||||+|+|||..||+||+|||||.
T Consensus       215 ~LYLiMEylPGGD~mTLL~~~--~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~  289 (550)
T KOG0605|consen  215 YLYLIMEYLPGGDMMTLLMRK--DTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLST  289 (550)
T ss_pred             eeEEEEEecCCccHHHHHHhc--CcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccc
Confidence            999999999999999999886  569999999999999999999999999999999999999999999999999984

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.4e-34  Score=301.50  Aligned_cols=181  Identities=29%  Similarity=0.479  Sum_probs=167.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .+|...+.||+|+|++||.+++..+|+.||+|++.+..+......+++.+|++|-+.|+|||||+++++|++.+++|||+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            46999999999999999999999999999999999988888888999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      |+|+.++|..+++++  ++++|.+++.++.||+.||.|||+++|+|||||..|+|++++.+|||+|||||+.+..     
T Consensus        98 ELC~~~sL~el~Krr--k~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk  175 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRR--KPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERK  175 (592)
T ss_pred             EecCCccHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCccccc
Confidence            999999999999965  6699999999999999999999999999999999999999999999999999976541     


Q ss_pred             -----CCceee-----------cccccchHHHHHHHHhCCcccC
Q 042772          461 -----KPQVFY-----------HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----~~~~~~-----------~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           .|.++.           ..|+|+.|+++|.+++|..||.
T Consensus       176 ~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFe  219 (592)
T KOG0575|consen  176 KTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFE  219 (592)
T ss_pred             ceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcc
Confidence                 233332           3389999999999999999996

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.6e-34  Score=290.45  Aligned_cols=182  Identities=30%  Similarity=0.493  Sum_probs=154.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc----hHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN----RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~----~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      .+.|-+.+.||+|+||.|.+|..+.||+.||||++++.....    ......+.+|++||++|+|||||+++++|.....
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            356889999999999999999999999999999998876543    2234456789999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC---CcEEEEecCCccc
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD---GHVVLTDFDLSFM  457 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~---g~vKL~DFGlS~~  457 (489)
                      .|+||||+.||+|++++..+  +.+.++.-..++.|++.|+.|||++||+||||||+|||+..+   ..+||+|||+|..
T Consensus       251 ~YmVlE~v~GGeLfd~vv~n--k~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~  328 (475)
T KOG0615|consen  251 SYMVLEYVEGGELFDKVVAN--KYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKV  328 (475)
T ss_pred             eEEEEEEecCccHHHHHHhc--cccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhc
Confidence            99999999999999999887  448999999999999999999999999999999999999765   7899999999975


Q ss_pred             cC--------C------CCceee---------cccccchHHHHHHHHhCCcccC
Q 042772          458 TS--------C------KPQVFY---------HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~--------~------~~~~~~---------~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..        |      +|+++.         ..|+|++|++++..++|.+||.
T Consensus       329 ~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS  382 (475)
T KOG0615|consen  329 SGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFS  382 (475)
T ss_pred             cccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcc
Confidence            53        2      233221         2266777777777777777774

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-34  Score=297.20  Aligned_cols=185  Identities=37%  Similarity=0.577  Sum_probs=167.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~  380 (489)
                      .....+|.+.+.||.|+|++|++|..+.+++.||||++.+......+.++.+.+|..+|.+| .||.|++|+-.|+++..
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            44567899999999999999999999999999999999999888888889999999999999 79999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+|+||+++|+|.++|++.  +.|++..++++++||+.||+|||++|||||||||+|||||+++++||+|||.|..+..
T Consensus       149 LYFvLe~A~nGdll~~i~K~--Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~  226 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKY--GSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSP  226 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCCh
Confidence            99999999999999999987  4599999999999999999999999999999999999999999999999999865431


Q ss_pred             C----------------------------------CceeecccccchHHHHHHHHhCCcccC
Q 042772          461 K----------------------------------PQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ~----------------------------------~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                                  ......+|+|.+|+++|.|+.|..||-
T Consensus       227 ~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFr  288 (604)
T KOG0592|consen  227 SQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFR  288 (604)
T ss_pred             hhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCc
Confidence            0                                  111234488999999999999999984

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-34  Score=283.16  Aligned_cols=184  Identities=27%  Similarity=0.446  Sum_probs=163.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-e
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-H  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-~  380 (489)
                      .+.+++.+.++.||+|..|+||+|.++.|++.+|+|++...  .+....+++.+|+++++.++||+||.+|++|..+. .
T Consensus        75 ~i~~~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~--~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~  152 (364)
T KOG0581|consen   75 GISLSDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLN--IDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEE  152 (364)
T ss_pred             ccCHHHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeeccc--CCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCce
Confidence            45667899999999999999999999999999999999433  35666788999999999999999999999999998 5


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ++|+||||.+|+|.++++..  +.++|.....++.+|+.||.|||. ++||||||||+|||++..|.|||||||.|..+.
T Consensus       153 isI~mEYMDgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lv  230 (364)
T KOG0581|consen  153 ISICMEYMDGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILV  230 (364)
T ss_pred             EEeehhhcCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhh
Confidence            99999999999999999876  458999999999999999999995 999999999999999999999999999986332


Q ss_pred             -------------CCC------ceeecccccchHHHHHHHHhCCcccCC
Q 042772          460 -------------CKP------QVFYHAHVNGFYFIMYKWLTGYFTYVP  489 (489)
Q Consensus       460 -------------~~~------~~~~~~~v~s~g~~a~e~~~G~lpY~~  489 (489)
                                   -.|      .+-..+|+|++|..+.|+++|..||.|
T Consensus       231 nS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~  279 (364)
T KOG0581|consen  231 NSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPP  279 (364)
T ss_pred             hhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCC
Confidence                         112      222356999999999999999999985

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.6e-33  Score=285.93  Aligned_cols=183  Identities=25%  Similarity=0.363  Sum_probs=157.8

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THI  381 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~  381 (489)
                      ..+.|+.++.||+|+||.||+|++..||+.||+|.+..... .........+|+.||++|+||||++|.+.....  ..+
T Consensus       115 ~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~-~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~si  193 (560)
T KOG0600|consen  115 RADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNE-KEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSI  193 (560)
T ss_pred             chHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccC-CCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceE
Confidence            34679999999999999999999999999999999976643 344556677899999999999999999988876  689


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      |||+|||++ +|.-++... .-.|++.++..++.||+.||+|||++||+|||||.+|||||.+|.+||+|||||++....
T Consensus       194 YlVFeYMdh-DL~GLl~~p-~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~  271 (560)
T KOG0600|consen  194 YLVFEYMDH-DLSGLLSSP-GVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPS  271 (560)
T ss_pred             EEEEecccc-hhhhhhcCC-CcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCC
Confidence            999999965 999888764 344999999999999999999999999999999999999999999999999999987766


Q ss_pred             CceeecccccchHHHHHHHHhCCcccCC
Q 042772          462 PQVFYHAHVNGFYFIMYKWLTGYFTYVP  489 (489)
Q Consensus       462 ~~~~~~~~v~s~g~~a~e~~~G~lpY~~  489 (489)
                      ....+...|.+++|.+||+++|..-|++
T Consensus       272 ~~~~~T~rVvTLWYRpPELLLG~t~Yg~  299 (560)
T KOG0600|consen  272 GSAPYTSRVVTLWYRPPELLLGATSYGT  299 (560)
T ss_pred             CCcccccceEEeeccChHHhcCCccccc
Confidence            5555666677777777777777766653

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=2.5e-33  Score=272.50  Aligned_cols=180  Identities=22%  Similarity=0.323  Sum_probs=153.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +.|+.+..+|+|+||.||+|+++.||+.||||.+..+. .++.-.+-..+|+.+|++++|||+|.++++|.....++||+
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Ese-dd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVF   80 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESE-DDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVF   80 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCC-ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEe
Confidence            46888999999999999999999999999999986442 23444456788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCCC---
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKP---  462 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~~---  462 (489)
                      |||+. ++.+-|++.+.+ ++++.+..++.|++.|+.|+|+++++||||||+||||+.+|.+||||||+|+.+..+.   
T Consensus        81 E~~dh-TvL~eLe~~p~G-~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~Y  158 (396)
T KOG0593|consen   81 EYCDH-TVLHELERYPNG-VPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNY  158 (396)
T ss_pred             eecch-HHHHHHHhccCC-CCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCCcchh
Confidence            99965 788888887765 7999999999999999999999999999999999999999999999999999877432   


Q ss_pred             -------------------ceeecccccchHHHHHHHHhCCcccC
Q 042772          463 -------------------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       463 -------------------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                         ++-.+.|+|+.|++.-|+++|..+|.
T Consensus       159 TDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~P  203 (396)
T KOG0593|consen  159 TDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWP  203 (396)
T ss_pred             hhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCC
Confidence                               22234466777777777777776664

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-33  Score=293.21  Aligned_cols=185  Identities=39%  Similarity=0.719  Sum_probs=165.4

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCC
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTST  379 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~  379 (489)
                      ..+++++|+++++||+|+||+|++++.+.+++.||||+++|.....++.+.....|..|+.... ||+++.++.+|++..
T Consensus       363 ~~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~  442 (694)
T KOG0694|consen  363 GPLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKE  442 (694)
T ss_pred             CcccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCC
Confidence            4788999999999999999999999999999999999999999999999999999999998885 999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ++|+||||+.||++..+.+   .+.|++..+++|+++|+.||.|||++||||||||.+|||+|.+|++||+|||+++...
T Consensus       443 ~l~fvmey~~Ggdm~~~~~---~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m  519 (694)
T KOG0694|consen  443 HLFFVMEYVAGGDLMHHIH---TDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM  519 (694)
T ss_pred             eEEEEEEecCCCcEEEEEe---cccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccC
Confidence            9999999999999544433   2559999999999999999999999999999999999999999999999999986321


Q ss_pred             ---------CC-Ccee-----------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CK-PQVF-----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~-~~~~-----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               |. |+++           ...|-|++|+.+|||++|..||.
T Consensus       520 ~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~  569 (694)
T KOG0694|consen  520 GQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFP  569 (694)
T ss_pred             CCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCC
Confidence                     22 2222           22266899999999999999996

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=6.3e-32  Score=280.09  Aligned_cols=184  Identities=31%  Similarity=0.522  Sum_probs=161.1

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-ch-HHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-NR-NKVHRACIEREIMSLLD-HPFLPTLYASFQTST  379 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-~~-~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~  379 (489)
                      ...+.|.+.+.||+|+||+|++|.+..++..||+|++++.... .. ...+.+.+|+.+++.+. ||||+++++++....
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            3456899999999999999999999999999999988765322 11 34456678999999998 999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-CcEEEEecCCcccc
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-GHVVLTDFDLSFMT  458 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-g~vKL~DFGlS~~~  458 (489)
                      .+|+|||||.||+|++++...  +.+.|..++.++.|++.|++|||++||+||||||+|||++.+ +.+||+|||+|...
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~--g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~  171 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNK--GRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAIS  171 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEecccccccc
Confidence            999999999999999999984  458999999999999999999999999999999999999999 99999999999855


Q ss_pred             -C--------C------C-------C-ceeecccccchHHHHHHHHhCCcccC
Q 042772          459 -S--------C------K-------P-QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 -~--------~------~-------~-~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                       .        +      +       + -.-..+|+|++|.+++.|++|.+||.
T Consensus       172 ~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~  224 (370)
T KOG0583|consen  172 PGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFD  224 (370)
T ss_pred             CCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCC
Confidence             1        1      1       1 11245699999999999999999996

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.98  E-value=1.4e-32  Score=275.21  Aligned_cols=182  Identities=27%  Similarity=0.509  Sum_probs=166.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||.|.||+|-+|.....|+.||||.+.+....+..++-.+++|++||+.|+||||+.+|.+|+..+.+.||
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIviv  131 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIV  131 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEE
Confidence            47899999999999999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||..+|+|++|+.+..  .|++.+++.++.||+.|+.|+|+++++|||||.+|||+|.|+.+||+|||+|....     
T Consensus       132 MEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfL  209 (668)
T KOG0611|consen  132 MEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFL  209 (668)
T ss_pred             EEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhccccHH
Confidence            99999999999999874  49999999999999999999999999999999999999999999999999995322     


Q ss_pred             ---CC------Ccee-------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ---CK------PQVF-------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---~~------~~~~-------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                         |.      |+..       ...|.|++|+.+|.+..|.+||+
T Consensus       210 qTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFD  254 (668)
T KOG0611|consen  210 QTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFD  254 (668)
T ss_pred             HHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccC
Confidence               21      2211       22377999999999999999996

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.5e-33  Score=271.76  Aligned_cols=156  Identities=26%  Similarity=0.451  Sum_probs=139.6

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeE-EEEeCCe-
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA-SFQTSTH-  380 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~-~~~~~~~-  380 (489)
                      ..+.+|++++.||.|+||.||++....+|..+|.|.++-.. .+....+.+..|+.+|++|+|||||++++ .|..++. 
T Consensus        16 ~~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~-md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~ev   94 (375)
T KOG0591|consen   16 KTLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGM-MDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEV   94 (375)
T ss_pred             ccHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhh-ccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchh
Confidence            34568999999999999999999999999999999998544 46677888999999999999999999999 5666555 


Q ss_pred             EEEEEecCCCCCHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHH--CC--CeecCCCCCCEEEecCCcEEEEecCC
Q 042772          381 ICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEYLHC--LG--IIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~--~~~~~l~e~~~~~i~~qI~~aL~yLH~--~g--IvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                      ++||||||.+|+|.+.++.  ...+.++|..++.++.|+|.||.++|+  ..  |+||||||.||||+.+|.+||+|||+
T Consensus        95 lnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL  174 (375)
T KOG0591|consen   95 LNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGL  174 (375)
T ss_pred             hHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchh
Confidence            9999999999999999875  244569999999999999999999998  45  99999999999999999999999999


Q ss_pred             ccccC
Q 042772          455 SFMTS  459 (489)
Q Consensus       455 S~~~~  459 (489)
                      +++..
T Consensus       175 ~r~l~  179 (375)
T KOG0591|consen  175 GRFLS  179 (375)
T ss_pred             HhHhc
Confidence            98665

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.97  E-value=4.4e-31  Score=272.79  Aligned_cols=181  Identities=35%  Similarity=0.623  Sum_probs=159.7

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||+||+|.++.+++.||+|++.+...........+..|+.++..++||||+++++++.+...+|+||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            36899999999999999999999999999999998765444555677888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||++||+|.+++.+.  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....     
T Consensus        81 E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~  158 (363)
T cd05628          81 EFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTE  158 (363)
T ss_pred             cCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccccccccc
Confidence            999999999999875  4489999999999999999999999999999999999999999999999999853210     


Q ss_pred             ---------------------------------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------------------------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------------------------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                                                   +|+      ....+|+|++|+++++|++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~  237 (363)
T cd05628         159 FYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC  237 (363)
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCC
Confidence                                                         111      1234589999999999999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.97  E-value=5.7e-31  Score=271.43  Aligned_cols=184  Identities=28%  Similarity=0.465  Sum_probs=158.9

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcE-EEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGEL-YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-  379 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~-vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-  379 (489)
                      .+....+...+.||+|+||+||+|.+.+  +. ||+|.+......... ...|..|+.+|.+++|||||+++|++.... 
T Consensus        37 ~i~~~~l~~~~~iG~G~~g~V~~~~~~g--~~~vavK~~~~~~~~~~~-~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~  113 (362)
T KOG0192|consen   37 EIDPDELPIEEVLGSGSFGTVYKGKWRG--TDVVAVKIISDPDFDDES-RKAFRREASLLSRLRHPNIVQFYGACTSPPG  113 (362)
T ss_pred             ecChHHhhhhhhcccCCceeEEEEEeCC--ceeEEEEEecchhcChHH-HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4455667777889999999999999995  44 999999876544443 789999999999999999999999999887 


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CeecCCCCCCEEEecCC-cEEEEecCCccc
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG-IIYRDLKPENILLQKDG-HVVLTDFDLSFM  457 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g-IvHrDLKP~NILld~~g-~vKL~DFGlS~~  457 (489)
                      ..++||||+++|+|.+++.......++...+..++.||+.||.|||+++ ||||||||+|||++.++ ++||+|||+|+.
T Consensus       114 ~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~  193 (362)
T KOG0192|consen  114 SLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSRE  193 (362)
T ss_pred             ceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCcccee
Confidence            7999999999999999998843456999999999999999999999999 99999999999999998 999999999964


Q ss_pred             cCC---------------CCcee--------ecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC---------------KPQVF--------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~---------------~~~~~--------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...               +|+.+        ..+|++++|.+++|+++|..||.
T Consensus       194 ~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~  247 (362)
T KOG0192|consen  194 KVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFE  247 (362)
T ss_pred             eccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCC
Confidence            331               23322        34489999999999999999996

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=3.8e-32  Score=257.05  Aligned_cols=187  Identities=32%  Similarity=0.476  Sum_probs=168.5

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ...+++|++.+.||.|-||.||+|+.+.++..||+|++.++........+++.+|++|-+.|+||||+++|++|.++..+
T Consensus        18 ~~~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~ri   97 (281)
T KOG0580|consen   18 TWTLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRI   97 (281)
T ss_pred             ccchhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheecccee
Confidence            34577899999999999999999999999999999999988776666678899999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      ||++||.++|+|+..|..++...+++..+..+..|++.|+.|+|.++++||||||+|+|++..|.+||+|||.|...+  
T Consensus        98 yLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~  177 (281)
T KOG0580|consen   98 YLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSN  177 (281)
T ss_pred             EEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecCCC
Confidence            999999999999999997777889999999999999999999999999999999999999999999999999985443  


Q ss_pred             -----CCC------ce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 -----CKP------QV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----~~~------~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           |.+      +.      -...|+|+.|...+|++.|..||.
T Consensus       178 kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFe  223 (281)
T KOG0580|consen  178 KRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFE  223 (281)
T ss_pred             CceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchh
Confidence                 211      11      123388999999999999999996

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.97  E-value=1.3e-31  Score=277.38  Aligned_cols=179  Identities=29%  Similarity=0.450  Sum_probs=160.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .+|.+.+.||+|+||+||+|+.+.|.+.||+|.++|... ..+.++.+.+|++|++.++||||+.++++|++..++|+|+
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr-~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVt   80 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGR-NEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVT   80 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCC-chHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEe
Confidence            478999999999999999999999999999999987643 5567888999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      |||.| +|+.+|....  .++|+.++.++.+++.||.|||+.+|+|||+||.|||++.+|++|+||||+|+..+.     
T Consensus        81 e~a~g-~L~~il~~d~--~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vl  157 (808)
T KOG0597|consen   81 EYAVG-DLFTILEQDG--KLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVL  157 (808)
T ss_pred             hhhhh-hHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccCceee
Confidence            99965 9999998864  499999999999999999999999999999999999999999999999999974331     


Q ss_pred             -----CC-----------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 -----KP-----------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----~~-----------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           .|           .+-..+|.|++|+++||+..|..||-
T Consensus       158 tsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~  201 (808)
T KOG0597|consen  158 TSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFY  201 (808)
T ss_pred             eeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCch
Confidence                 11           12234588999999999999999983

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.8e-31  Score=279.74  Aligned_cols=181  Identities=32%  Similarity=0.540  Sum_probs=163.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +.|++.+.||.|+.|.|.+|++..||+.+|||++.+...........+.+|+-||+.+.||||+++|++|....++|+|.
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            56999999999999999999999999999999998875555556677889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc--------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM--------  457 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~--------  457 (489)
                      ||++||.|+++|-+.  +++++..+..++.||+.|+.|+|..+|+||||||+|+|||..+.|||+|||+|.+        
T Consensus        92 Eyv~gGELFdylv~k--G~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLe  169 (786)
T KOG0588|consen   92 EYVPGGELFDYLVRK--GPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLE  169 (786)
T ss_pred             EecCCchhHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccCCcccc
Confidence            999999999999887  4599999999999999999999999999999999999999999999999999963        


Q ss_pred             cCCC------Cce-------eecccccchHHHHHHHHhCCcccC
Q 042772          458 TSCK------PQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~~------~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ++|+      |++       -.++|||+.|++++-+++|.+||+
T Consensus       170 TSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFd  213 (786)
T KOG0588|consen  170 TSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFD  213 (786)
T ss_pred             ccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCC
Confidence            2232      222       246699999999999999999996

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.3e-30  Score=270.53  Aligned_cols=148  Identities=42%  Similarity=0.761  Sum_probs=137.0

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++++.||+|+||.||+|..+.+++.||+|.+.+...........+..|+.+++.++||||++++++|.+...+|+|||
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E   81 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIME   81 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEe
Confidence            68999999999999999999999999999999976544445566788899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      |+++|+|.+++...  ..+++..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||+|+
T Consensus        82 ~~~gg~L~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~  149 (377)
T cd05629          82 FLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLST  149 (377)
T ss_pred             CCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccc
Confidence            99999999999765  458999999999999999999999999999999999999999999999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.2e-30  Score=268.81  Aligned_cols=181  Identities=38%  Similarity=0.675  Sum_probs=159.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||.||+|.+..+++.||+|++.+...........+..|+.++..++||||++++++|.+...+|+||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            36999999999999999999999999999999998654444556677888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++|+|.+++...  ..+++..++.++.|++.||.|||++||+||||||+|||++.+|.+||+|||++.....     
T Consensus        81 E~~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~  158 (364)
T cd05599          81 EYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTE  158 (364)
T ss_pred             CCCCCcHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecccccccc
Confidence            999999999999875  3489999999999999999999999999999999999999999999999999853210     


Q ss_pred             ------------------------------------------------CCc------eeecccccchHHHHHHHHhCCcc
Q 042772          461 ------------------------------------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFT  486 (489)
Q Consensus       461 ------------------------------------------------~~~------~~~~~~v~s~g~~a~e~~~G~lp  486 (489)
                                                                      +|+      ....+|+|++|++++++++|..|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~P  238 (364)
T cd05599         159 FYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPP  238 (364)
T ss_pred             ccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCC
Confidence                                                            011      12345999999999999999999


Q ss_pred             cC
Q 042772          487 YV  488 (489)
Q Consensus       487 Y~  488 (489)
                      |.
T Consensus       239 f~  240 (364)
T cd05599         239 FC  240 (364)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.97  E-value=2.1e-30  Score=264.24  Aligned_cols=184  Identities=36%  Similarity=0.650  Sum_probs=162.3

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|.+.+.........+.+..|+.+++.++||||+++++++.....+|
T Consensus        15 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   94 (329)
T PTZ00263         15 WKLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVY   94 (329)
T ss_pred             CCchheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEE
Confidence            34578999999999999999999999999999999998764444455677889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      +||||+++|+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....  
T Consensus        95 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~  172 (329)
T PTZ00263         95 FLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT  172 (329)
T ss_pred             EEEcCCCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc
Confidence            999999999999999875  3489999999999999999999999999999999999999999999999999864331  


Q ss_pred             ----------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|+      ....+|+|++|++++++++|..||.
T Consensus       173 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~  216 (329)
T PTZ00263        173 FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFF  216 (329)
T ss_pred             ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCC
Confidence                      111      1234699999999999999999984

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.97  E-value=2.2e-30  Score=269.48  Aligned_cols=148  Identities=42%  Similarity=0.705  Sum_probs=137.6

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|++++.||+|+||+||+|.+..+++.||+|++.+...........+..|+.+++.++||||+++++++.+...+|+|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            58999999999999999999999999999999987655556667788999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      |+++|+|.+++.+.  ..+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++.
T Consensus        82 ~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~  149 (381)
T cd05626          82 YIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCT  149 (381)
T ss_pred             cCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCc
Confidence            99999999999875  348999999999999999999999999999999999999999999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.97  E-value=2.4e-30  Score=268.88  Aligned_cols=148  Identities=43%  Similarity=0.711  Sum_probs=137.1

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|+.++.||+|+||.||+|.+..+++.||+|.+.+...........+..|+.+++.++||||++++++|.+...+|+|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            58999999999999999999999999999999987654455567788899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      |+++|+|.+++.+.  ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||++.
T Consensus        82 ~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~  149 (382)
T cd05625          82 YIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (382)
T ss_pred             CCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCc
Confidence            99999999999775  348999999999999999999999999999999999999999999999999863

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.97  E-value=7e-31  Score=251.71  Aligned_cols=178  Identities=24%  Similarity=0.381  Sum_probs=147.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .+|..++.||+|.||.||+|++..||+.||||.++.....+ ..-....+|+.+|+.++||||+.++++|.+.+.+.||+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kd-Gi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKD-GINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeecccccc-CccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEE
Confidence            46889999999999999999999999999999998764332 22345678999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCCCcee
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF  465 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~~~~~  465 (489)
                      ||++ .+|...++... ..++...+..|+.+++.||+|||++.|+||||||.|+|++++|.+||+|||+|+....+... 
T Consensus        81 Efm~-tdLe~vIkd~~-i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~-  157 (318)
T KOG0659|consen   81 EFMP-TDLEVVIKDKN-IILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI-  157 (318)
T ss_pred             Eecc-ccHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcc-
Confidence            9995 59999998753 56899999999999999999999999999999999999999999999999999977643222 


Q ss_pred             ecccccchHHHHHHHHhCCccc
Q 042772          466 YHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       466 ~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      ....|.+.+|.+||+++|.--|
T Consensus       158 ~~~~V~TRWYRAPELLfGsr~Y  179 (318)
T KOG0659|consen  158 QTHQVVTRWYRAPELLFGSRQY  179 (318)
T ss_pred             cccceeeeeccChHHhccchhc
Confidence            2222444444444444444444

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.97  E-value=1.8e-30  Score=269.10  Aligned_cols=148  Identities=42%  Similarity=0.721  Sum_probs=136.1

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++++.||+|+||.||+|.+..+++.||+|.+.+...........+.+|+.+++.++||||+++++.|...+.+|+|||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            69999999999999999999999999999999976544344456778889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      |+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|.
T Consensus        82 ~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~  149 (376)
T cd05598          82 YIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (376)
T ss_pred             CCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence            99999999999775  348999999999999999999999999999999999999999999999999863

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-30  Score=265.78  Aligned_cols=186  Identities=31%  Similarity=0.534  Sum_probs=155.3

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc-----------hHHHHHHHHHHHHHHhCCCCCc
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-----------RNKVHRACIEREIMSLLDHPFL  368 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~-----------~~~~~~~~~E~~il~~l~HpnI  368 (489)
                      .....+++|++++.||+|.||.|.+|.+..+++.||||++++.....           ....+++.+|+.||+++.||||
T Consensus        91 ~~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nV  170 (576)
T KOG0585|consen   91 QDRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNV  170 (576)
T ss_pred             ccceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCe
Confidence            34556789999999999999999999999999999999998754321           1124688999999999999999


Q ss_pred             ceeeEEEEeC--CeEEEEEecCCCCCHHHHHhhCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC
Q 042772          369 PTLYASFQTS--THICLITDFCPGGELFALLDKQPMKI-FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       369 v~l~~~~~~~--~~~~lVmEy~~ggsL~~~L~~~~~~~-l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g  445 (489)
                      |+|+.+..+.  +.+|||+|||..|.+...-   ..+. +++.+++.++..++.||+|||.+||+||||||+|+||+++|
T Consensus       171 V~LiEvLDDP~s~~~YlVley~s~G~v~w~p---~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g  247 (576)
T KOG0585|consen  171 VKLIEVLDDPESDKLYLVLEYCSKGEVKWCP---PDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDG  247 (576)
T ss_pred             eEEEEeecCcccCceEEEEEeccCCccccCC---CCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCC
Confidence            9999998765  5899999999988875432   2344 89999999999999999999999999999999999999999


Q ss_pred             cEEEEecCCccccC--------------------CCCcee----------ecccccchHHHHHHHHhCCcccC
Q 042772          446 HVVLTDFDLSFMTS--------------------CKPQVF----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       446 ~vKL~DFGlS~~~~--------------------~~~~~~----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ++||+|||.|....                    .+|+..          ..-|+|++|+++|-++.|.+||-
T Consensus       248 ~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~  320 (576)
T KOG0585|consen  248 TVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFF  320 (576)
T ss_pred             cEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcc
Confidence            99999999986441                    112211          22388899999999999999884

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=4.8e-30  Score=261.43  Aligned_cols=181  Identities=34%  Similarity=0.602  Sum_probs=160.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||.||+|.+..+++.||+|++.+...........+..|+.++..++||||+++++++......|+||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            36999999999999999999999999999999998765444455677888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....     
T Consensus        81 e~~~g~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~  158 (333)
T cd05600          81 EYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSV  158 (333)
T ss_pred             eCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCcccccccCCc
Confidence            999999999999765  3489999999999999999999999999999999999999999999999999864321     


Q ss_pred             -------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             +|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~  199 (333)
T cd05600         159 VGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFS  199 (333)
T ss_pred             ccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCC
Confidence                   1222      234699999999999999999985

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.8e-30  Score=258.36  Aligned_cols=181  Identities=33%  Similarity=0.599  Sum_probs=158.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||+|.++.+++.||+|.+.............+.+|+.+++.++||||+++++++.+...+|+||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            36899999999999999999999999999999997654333345567888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++|+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+|||++.....     
T Consensus        81 e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~  158 (291)
T cd05612          81 EYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTL  158 (291)
T ss_pred             eCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCcccc
Confidence            999999999999875  3489999999999999999999999999999999999999999999999999864321     


Q ss_pred             -------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             +|+      ....+|+|++|++++++++|..||.
T Consensus       159 ~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~  199 (291)
T cd05612         159 CGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFF  199 (291)
T ss_pred             cCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                   111      1234599999999999999999985

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.97  E-value=4.1e-30  Score=266.97  Aligned_cols=183  Identities=30%  Similarity=0.561  Sum_probs=160.5

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|++.+...........+..|+.+++.++||||+++++++..+..+|
T Consensus        40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~  119 (370)
T cd05621          40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLY  119 (370)
T ss_pred             CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE
Confidence            34568999999999999999999999999999999997654444445566788999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      +||||+++|+|.+++...   .+++..+..++.||+.||.|||++||+||||||+|||+++++.+||+|||+|....   
T Consensus       120 lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~  196 (370)
T cd05621         120 MVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETG  196 (370)
T ss_pred             EEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCC
Confidence            999999999999999764   37899999999999999999999999999999999999999999999999986431   


Q ss_pred             -------------CCCc----------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 -------------CKPQ----------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -------------~~~~----------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   .+|+          ....+|+|++|++++++++|..||.
T Consensus       197 ~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~  248 (370)
T cd05621         197 MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFY  248 (370)
T ss_pred             ceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCC
Confidence                         1122          1235799999999999999999985

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.97  E-value=5.5e-30  Score=262.97  Aligned_cols=185  Identities=36%  Similarity=0.628  Sum_probs=161.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCC-cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAG-ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg-~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      .+..++|++.+.||+|+||.||+|.++.++ ..||+|.+.+...........+..|+.+++.++||||+++++++.+...
T Consensus        26 ~~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~  105 (340)
T PTZ00426         26 KMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESY  105 (340)
T ss_pred             CCChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCE
Confidence            345678999999999999999999977655 7899999976654445566778899999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+||||+++|+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus       106 ~~lv~Ey~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~  183 (340)
T PTZ00426        106 LYLVLEFVIGGEFFTFLRRN--KRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT  183 (340)
T ss_pred             EEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCC
Confidence            99999999999999999875  3489999999999999999999999999999999999999999999999999864321


Q ss_pred             ------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+      ....+|+|++|+++++|++|..||.
T Consensus       184 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~  229 (340)
T PTZ00426        184 RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFY  229 (340)
T ss_pred             CcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCC
Confidence                        111      1234599999999999999999985

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.97  E-value=7.7e-30  Score=254.19  Aligned_cols=181  Identities=31%  Similarity=0.526  Sum_probs=157.5

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |+..+.||+|+||.||+|.+..+++.||+|.+.+...........+.+|+.+++.++||||+++++++...+..++||||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            78889999999999999999999999999999765443344445677899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-------  460 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-------  460 (489)
                      +++|+|.+++.......+++..+..++.|++.||.|||++||+||||||+|||+++++.+||+|||++.....       
T Consensus        82 ~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~  161 (285)
T cd05631          82 MNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGR  161 (285)
T ss_pred             cCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecCC
Confidence            9999999888765444589999999999999999999999999999999999999999999999999864321       


Q ss_pred             -------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             +|+.      ...+|+|++|++++++++|..||.
T Consensus       162 ~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~  202 (285)
T cd05631         162 VGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFR  202 (285)
T ss_pred             CCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCC
Confidence                   1221      234599999999999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=7.9e-30  Score=259.16  Aligned_cols=175  Identities=39%  Similarity=0.698  Sum_probs=154.1

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      +.||+|+||.||+|.++.+|+.||+|++.+...........+..|+.+++.++||||+++++++.....+|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            46899999999999999999999999998765445556677888999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------------
Q 042772          392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------------  459 (489)
Q Consensus       392 sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------------  459 (489)
                      +|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....            
T Consensus        81 ~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt  158 (323)
T cd05571          81 ELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGT  158 (323)
T ss_pred             cHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecC
Confidence            999999875  458999999999999999999999999999999999999999999999999986321            


Q ss_pred             ---CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                         .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~  196 (323)
T cd05571         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  196 (323)
T ss_pred             ccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCC
Confidence               11222      234699999999999999999984

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-31  Score=293.38  Aligned_cols=185  Identities=34%  Similarity=0.567  Sum_probs=167.5

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|.++++||+|+||.|.+++++.|++.||+|++++..+..+.....|+.|..+|..-+.+-|+.++-+|+++.++
T Consensus        71 rl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~L  150 (1317)
T KOG0612|consen   71 RLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYL  150 (1317)
T ss_pred             hCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccce
Confidence            44567899999999999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      |+||||++||+|..+|.+..  .++++.+++|++.|+.||.-||+.|+|||||||+|||||..|+|||+|||.+-...  
T Consensus       151 YlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~d  228 (1317)
T KOG0612|consen  151 YLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDAD  228 (1317)
T ss_pred             EEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCCC
Confidence            99999999999999998864  59999999999999999999999999999999999999999999999999863222  


Q ss_pred             ---------CCCceee----------------cccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQVFY----------------HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~~~----------------~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +.|.+++                ..|-|+.|+++|||+.|.+||-
T Consensus       229 G~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFY  282 (1317)
T KOG0612|consen  229 GTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFY  282 (1317)
T ss_pred             CcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcch
Confidence                     2233332                3367899999999999999983

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.97  E-value=4.4e-30  Score=264.87  Aligned_cols=181  Identities=35%  Similarity=0.631  Sum_probs=158.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||.||+|..+.+++.||+|++.+...........+..|+.++..++||||+++++.+.+...+|+||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            36899999999999999999999999999999998654444556678888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||++||+|.+++.+.  ..+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+|||++.....     
T Consensus        81 E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~  158 (360)
T cd05627          81 EFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTE  158 (360)
T ss_pred             eCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccc
Confidence            999999999999775  3489999999999999999999999999999999999999999999999998753210     


Q ss_pred             ---------------------------------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------------------------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------------------------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                                                   +|+      ....+|+|++|+++++|++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~  237 (360)
T cd05627         159 FYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC  237 (360)
T ss_pred             cccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCC
Confidence                                                         111      1234589999999999999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.97  E-value=9e-30  Score=264.37  Aligned_cols=184  Identities=31%  Similarity=0.564  Sum_probs=161.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||.||+|.++.+++.||+|.+.+...........+..|+.+++.++||||+++++++.....+
T Consensus        39 ~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~  118 (371)
T cd05622          39 RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYL  118 (371)
T ss_pred             CcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEE
Confidence            45567899999999999999999999999999999999765444445556778899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      |+||||+++|+|.+++...   .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....  
T Consensus       119 ~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~  195 (371)
T cd05622         119 YMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE  195 (371)
T ss_pred             EEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcC
Confidence            9999999999999999763   37899999999999999999999999999999999999999999999999985322  


Q ss_pred             --------------CCCc----------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 --------------CKPQ----------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------------~~~~----------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    .+|+          ....+|+|++|+++++|++|..||.
T Consensus       196 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~  248 (371)
T cd05622         196 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFY  248 (371)
T ss_pred             CcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCC
Confidence                          1122          1235699999999999999999985

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-30  Score=268.18  Aligned_cols=185  Identities=26%  Similarity=0.384  Sum_probs=160.4

Q ss_pred             CCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       299 ~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      ....+....+++++.||+|.||.||+|.+++ ...||+|.++...+..    +.|.+|+++|++|+|+|||++++++..+
T Consensus       199 d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~-~~~vavk~ik~~~m~~----~~f~~Ea~iMk~L~H~~lV~l~gV~~~~  273 (468)
T KOG0197|consen  199 DPWEIPREELKLIRELGSGQFGEVWLGKWNG-STKVAVKTIKEGSMSP----EAFLREAQIMKKLRHEKLVKLYGVCTKQ  273 (468)
T ss_pred             CCeeecHHHHHHHHHhcCCccceEEEEEEcC-CCcccceEEeccccCh----hHHHHHHHHHHhCcccCeEEEEEEEecC
Confidence            3445666778999999999999999999996 3468999997654432    4566899999999999999999999998


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+||||||++.|+|.++|.......+.......++.|||.||+||+++++|||||..+||||++++.+||+|||+|+..
T Consensus       274 ~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~  353 (468)
T KOG0197|consen  274 EPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLI  353 (468)
T ss_pred             CceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEccccccccc
Confidence            89999999999999999999866667999999999999999999999999999999999999999999999999999953


Q ss_pred             CC----------------CCc------eeecccccchHHHHHHH-HhCCcccC
Q 042772          459 SC----------------KPQ------VFYHAHVNGFYFIMYKW-LTGYFTYV  488 (489)
Q Consensus       459 ~~----------------~~~------~~~~~~v~s~g~~a~e~-~~G~lpY~  488 (489)
                      ..                +|+      ....+|||+||..++|+ ..|..||.
T Consensus       354 ~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~  406 (468)
T KOG0197|consen  354 GDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYP  406 (468)
T ss_pred             CCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCC
Confidence            31                111      12456999999999998 58999986

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.97  E-value=8.6e-30  Score=264.33  Aligned_cols=184  Identities=32%  Similarity=0.549  Sum_probs=161.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||.||+|.++.+++.||+|.+++...........+..|+.+++.++||||+++++++.+...+
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~  118 (370)
T cd05596          39 RMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYL  118 (370)
T ss_pred             CCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            45567899999999999999999999999999999999765444445556678899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+||||+++|+|.+++...   .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++..... 
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~  195 (370)
T cd05596         119 YMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDAN  195 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCC
Confidence            9999999999999998763   378999999999999999999999999999999999999999999999999854321 


Q ss_pred             ---------------CCce----------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQV----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~~----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+.          ...+|+|++|++++++++|..||.
T Consensus       196 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~  248 (370)
T cd05596         196 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFY  248 (370)
T ss_pred             CcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcC
Confidence                           1221          134699999999999999999985

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-30  Score=260.45  Aligned_cols=179  Identities=31%  Similarity=0.457  Sum_probs=154.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC--eEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST--HICL  383 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~~l  383 (489)
                      .+|...+.||+|+||.||++.+..+|...|+|.+...   +....+.+.+|+.+|++++|||||++++......  .+++
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~---~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i   93 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELE---DSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNI   93 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecc---cchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEe
Confidence            4588899999999999999999999999999998765   1122677889999999999999999999754444  6999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-CCcEEEEecCCccccC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-~g~vKL~DFGlS~~~~---  459 (489)
                      +|||+++|+|.+++.+... .+++..++.++.|++.||.|||++|++||||||+|||++. ++.+||+|||++....   
T Consensus        94 ~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~  172 (313)
T KOG0198|consen   94 FMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKG  172 (313)
T ss_pred             eeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccccccccc
Confidence            9999999999999998765 6999999999999999999999999999999999999999 7999999999886332   


Q ss_pred             ---------------CCCceee-------cccccchHHHHHHHHhCCcccC
Q 042772          460 ---------------CKPQVFY-------HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------------~~~~~~~-------~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     -.|+++.       .+|+|++|+++-||++|..||.
T Consensus       173 ~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~  223 (313)
T KOG0198|consen  173 TKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWS  223 (313)
T ss_pred             ccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcch
Confidence                           1233332       5688999999999999998885

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.97  E-value=1.7e-30  Score=255.73  Aligned_cols=180  Identities=21%  Similarity=0.287  Sum_probs=145.6

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THI  381 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~  381 (489)
                      +.++|+.++.|++|+||.||+|.++.|++.||+|.++..... ...--...+|+.+|.+++|||||.+-.+....  +.+
T Consensus        74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek-~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~i  152 (419)
T KOG0663|consen   74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEK-EGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKI  152 (419)
T ss_pred             cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeeccccccc-CCCcchhHHHHHHHHhcCCCCeeeeEEEEecccccee
Confidence            346799999999999999999999999999999999765421 11122356799999999999999999888754  479


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      |+|||||++ +|.++++..+ .+|...++..++.|++.|++|||.+.|+||||||+|+|++..|.+||+|||+|+....+
T Consensus       153 y~VMe~~Eh-DLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp  230 (419)
T KOG0663|consen  153 YIVMEYVEH-DLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSP  230 (419)
T ss_pred             eeeHHHHHh-hHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCC
Confidence            999999965 9999999875 56999999999999999999999999999999999999999999999999999977754


Q ss_pred             CceeecccccchHHHHHHHHhCCccc
Q 042772          462 PQVFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       462 ~~~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      ... +.+-|.+++|.+||+++|...|
T Consensus       231 ~k~-~T~lVVTLWYRaPELLLG~~ty  255 (419)
T KOG0663|consen  231 LKP-YTPLVVTLWYRAPELLLGAKTY  255 (419)
T ss_pred             ccc-CcceEEEeeecCHHHhcCCccc
Confidence            322 2222334444444444444433

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-30  Score=254.43  Aligned_cols=185  Identities=39%  Similarity=0.718  Sum_probs=167.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|..++.||+|.||+|-+|+.+.+++.||||++++.....++.+.....|-.+|+..+||++..+-.+|++..++
T Consensus       164 kvTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drl  243 (516)
T KOG0690|consen  164 KVTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRL  243 (516)
T ss_pred             eeccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceE
Confidence            45678999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc----
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM----  457 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~----  457 (489)
                      |+||||..||.|+-+|.+.  ..++++.++++-.+|+.||.|||+++||+||||.+|+|+|++|+|||+|||++..    
T Consensus       244 CFVMeyanGGeLf~HLsre--r~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~  321 (516)
T KOG0690|consen  244 CFVMEYANGGELFFHLSRE--RVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKY  321 (516)
T ss_pred             EEEEEEccCceEeeehhhh--hcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhcccc
Confidence            9999999999999999875  5599999999999999999999999999999999999999999999999999852    


Q ss_pred             -----cCC-CCceeec-----------ccccchHHHHHHHHhCCcccC
Q 042772          458 -----TSC-KPQVFYH-----------AHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 -----~~~-~~~~~~~-----------~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           +.| .|++..+           .+-|+.|+.+|||+||.+||-
T Consensus       322 g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFy  369 (516)
T KOG0690|consen  322 GDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFY  369 (516)
T ss_pred             cceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccc
Confidence                 112 2333332           356899999999999999984

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.1e-29  Score=257.11  Aligned_cols=182  Identities=33%  Similarity=0.574  Sum_probs=159.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||.||++.+..+++.||+|++.+...........+..|+.++..++||||+++++++....++|+||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            36999999999999999999999999999999998654444555677888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++|+|.+++.+.. ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....     
T Consensus        81 e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~  159 (331)
T cd05597          81 DYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQ  159 (331)
T ss_pred             ecCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCcc
Confidence            9999999999997642 3489999999999999999999999999999999999999999999999999753211     


Q ss_pred             -----------CCcee-----------ecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KPQVF-----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~~~~-----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|+.+           ..+|+|++|++++++++|..||.
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~  209 (331)
T cd05597         160 SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFY  209 (331)
T ss_pred             ccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCC
Confidence                       12211           24699999999999999999984

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=7.5e-31  Score=268.01  Aligned_cols=155  Identities=28%  Similarity=0.458  Sum_probs=138.6

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCC-eE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTST-HI  381 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~-~~  381 (489)
                      ..++|.+++.||.|+||.||+|..+.+|..||||.|++.... -++. .-.+|+..|++|+ ||||+++.+++.+.. .+
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~ee~-~nLREvksL~kln~hpniikL~Evi~d~~~~L   85 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-WEEC-MNLREVKSLRKLNPHPNIIKLKEVIRDNDRIL   85 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-HHHH-HHHHHHHHHHhcCCCCcchhhHHHhhccCceE
Confidence            346899999999999999999999999999999999876543 2222 2356999999998 999999999998877 99


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      |+||||| ..+|+++++.+ .+.|++..++.|+.||+.||+|+|++|+.||||||+|||+..+..|||+|||+||.....
T Consensus        86 ~fVfE~M-d~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Sk  163 (538)
T KOG0661|consen   86 YFVFEFM-DCNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSK  163 (538)
T ss_pred             eeeHHhh-hhhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccccC
Confidence            9999999 56999999988 678999999999999999999999999999999999999998889999999999976654


Q ss_pred             C
Q 042772          462 P  462 (489)
Q Consensus       462 ~  462 (489)
                      |
T Consensus       164 p  164 (538)
T KOG0661|consen  164 P  164 (538)
T ss_pred             C
Confidence            3

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=8.6e-30  Score=260.48  Aligned_cols=181  Identities=38%  Similarity=0.678  Sum_probs=160.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++.+...........+..|+.++..++||||+++++++.+...+|+||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            36999999999999999999999999999999998765444456677889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCCC---
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKP---  462 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~~---  462 (489)
                      ||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.......   
T Consensus        81 e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  158 (350)
T cd05573          81 EYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDRE  158 (350)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccc
Confidence            999999999999876  458999999999999999999999999999999999999999999999999986432111   


Q ss_pred             -----------------------------------------c------eeecccccchHHHHHHHHhCCcccC
Q 042772          463 -----------------------------------------Q------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       463 -----------------------------------------~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                                               +      ....+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~  231 (350)
T cd05573         159 YYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFY  231 (350)
T ss_pred             ccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCC
Confidence                                                     1      1234589999999999999999985

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-29  Score=256.50  Aligned_cols=188  Identities=26%  Similarity=0.359  Sum_probs=165.8

Q ss_pred             CCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       299 ~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      .+..+..++|++.+.||.|..++||+|....++..||||+++.....  ..++.+.+|++.|+.++||||++++.+|..+
T Consensus        19 ~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~--~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~   96 (516)
T KOG0582|consen   19 KEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCN--NDLDALRKEVQTMSLIDHPNIVTYHCSFVVD   96 (516)
T ss_pred             ccCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhh--hhHHHHHHHHHHhhhcCCCCcceEEEEEEec
Confidence            34456678899999999999999999999999999999999876543  3488899999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+|+||.||.+|++.++++..-...++|..+..++.+++.||.|||++|-||||||+.||||+.+|.|||+|||.+..+
T Consensus        97 ~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l  176 (516)
T KOG0582|consen   97 SELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASL  176 (516)
T ss_pred             ceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeee
Confidence            99999999999999999999875555999999999999999999999999999999999999999999999999987422


Q ss_pred             C-------------CCCcee--------------ecccccchHHHHHHHHhCCcccC
Q 042772          459 S-------------CKPQVF--------------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~-------------~~~~~~--------------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .             .....|              ..+|+|++|.++.|++.|..||.
T Consensus       177 ~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~  233 (516)
T KOG0582|consen  177 FDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFS  233 (516)
T ss_pred             cccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcc
Confidence            1             111122              23588999999999999999996

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.96  E-value=3.8e-30  Score=269.19  Aligned_cols=186  Identities=24%  Similarity=0.345  Sum_probs=163.4

Q ss_pred             cCCCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       297 ~~~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      ....+++..+.+.+.+.||+|+||+||+|.+.++   ||||+++..... ...++.|++|+.++++-+|-||+-+.|++.
T Consensus       383 s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whGd---VAVK~Lnv~~pt-~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~  458 (678)
T KOG0193|consen  383 SLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHGD---VAVKLLNVDDPT-PEQLQAFKNEVAVLKKTRHENILLFMGACM  458 (678)
T ss_pred             cccccccCHHHhhccceeccccccceeecccccc---eEEEEEecCCCC-HHHHHHHHHHHHHHhhcchhhheeeehhhc
Confidence            3345667778889999999999999999999974   999999876554 458899999999999999999999999998


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          377 TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      .+.. .||+-+|+|-+|+.+|+.... .|.......|+.|++.||.|||.++|||||||..|||+.+++.|||+|||++.
T Consensus       459 ~p~~-AIiTqwCeGsSLY~hlHv~et-kfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLat  536 (678)
T KOG0193|consen  459 NPPL-AIITQWCEGSSLYTHLHVQET-KFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLAT  536 (678)
T ss_pred             CCce-eeeehhccCchhhhhccchhh-hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEeccccee
Confidence            8876 999999999999999987653 48999999999999999999999999999999999999999999999999986


Q ss_pred             ccC--------------------------CCCceeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTS--------------------------CKPQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~--------------------------~~~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +..                          +...+...+||++||..+||+++|++||.
T Consensus       537 vk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPys  594 (678)
T KOG0193|consen  537 VKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYS  594 (678)
T ss_pred             eeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcC
Confidence            432                          11223346699999999999999999996

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.96  E-value=3.1e-29  Score=255.67  Aligned_cols=175  Identities=39%  Similarity=0.697  Sum_probs=154.1

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      +.||+|+||.||+|.++.+++.||+|++.+...........+.+|+.+++.++||||+++++++.....+|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            46899999999999999999999999998765545556678888999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------------
Q 042772          392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------------  459 (489)
Q Consensus       392 sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------------  459 (489)
                      +|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....            
T Consensus        81 ~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt  158 (328)
T cd05593          81 ELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGT  158 (328)
T ss_pred             CHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCC
Confidence            999998765  348999999999999999999999999999999999999999999999999986321            


Q ss_pred             ---CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                         .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~  196 (328)
T cd05593         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  196 (328)
T ss_pred             cCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCC
Confidence               11222      234599999999999999999984

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.96  E-value=2.5e-29  Score=255.66  Aligned_cols=175  Identities=38%  Similarity=0.697  Sum_probs=153.5

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      +.||+|+||.||++.++.+|+.||+|.+.+...........+..|+.+++.++||||++++++|.....+|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            46899999999999999999999999998765444556677788999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------------
Q 042772          392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------------  459 (489)
Q Consensus       392 sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------------  459 (489)
                      +|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....            
T Consensus        81 ~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt  158 (323)
T cd05595          81 ELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGT  158 (323)
T ss_pred             cHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCC
Confidence            999998765  348999999999999999999999999999999999999999999999999875321            


Q ss_pred             ---CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                         .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~  196 (323)
T cd05595         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  196 (323)
T ss_pred             cCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCC
Confidence               11222      234599999999999999999984

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.6e-29  Score=252.94  Aligned_cols=173  Identities=35%  Similarity=0.604  Sum_probs=152.7

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCH
Q 042772          314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL  393 (489)
Q Consensus       314 LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL  393 (489)
                      ||+|+||.||+|.+..+++.||+|.+.+...........+..|+.+++.++||||+++++++......|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            79999999999999999999999999865544555667788899999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--------------
Q 042772          394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--------------  459 (489)
Q Consensus       394 ~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--------------  459 (489)
                      .+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....              
T Consensus        81 ~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~  158 (312)
T cd05585          81 FHHLQRE--GRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPE  158 (312)
T ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcc
Confidence            9999775  348999999999999999999999999999999999999999999999999986421              


Q ss_pred             -CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 -CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                       .+|+      ....+|+|++|++++++++|..||.
T Consensus       159 y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~  194 (312)
T cd05585         159 YLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFY  194 (312)
T ss_pred             cCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcC
Confidence             0111      1234699999999999999999984

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.96  E-value=2.5e-29  Score=256.50  Aligned_cols=182  Identities=32%  Similarity=0.518  Sum_probs=158.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||++.++.+++.||+|.+.+...........+..|..++..++||||+.+++++...+..|+||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            36999999999999999999999999999999997654444455666788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||++||+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....      
T Consensus        81 Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~  159 (331)
T cd05624          81 DYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQ  159 (331)
T ss_pred             eCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCcee
Confidence            9999999999998642 348999999999999999999999999999999999999999999999999975321      


Q ss_pred             ----------CCCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+.           ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~  209 (331)
T cd05624         160 SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFY  209 (331)
T ss_pred             eccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCcc
Confidence                      11221           124599999999999999999985

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.96  E-value=1.4e-29  Score=252.27  Aligned_cols=153  Identities=25%  Similarity=0.410  Sum_probs=134.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCC-cceeeEEEEeCC----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF-LPTLYASFQTST----  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~----  379 (489)
                      ...|..++.||+|+||+||+|..+.+|+.||+|.+.-.... ...-....+|+.+++.++|+| |+.+++++.+.+    
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~-EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~   88 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEE-EGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRG   88 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccc-cCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccc
Confidence            34688899999999999999999999999999999765331 112245678999999999999 999999998877    


Q ss_pred             --eEEEEEecCCCCCHHHHHhhCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          380 --HICLITDFCPGGELFALLDKQPM--KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       380 --~~~lVmEy~~ggsL~~~L~~~~~--~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                        .+++|+||+ ..+|..+++..+.  ..++...++.++.||+.||+|||+++|+||||||+||||+++|.+||+|||+|
T Consensus        89 ~~~l~lvfe~~-d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlA  167 (323)
T KOG0594|consen   89 IGKLYLVFEFL-DRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLA  167 (323)
T ss_pred             cceEEEEEEee-cccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchH
Confidence              899999999 5699999998653  24788999999999999999999999999999999999999999999999999


Q ss_pred             cccC
Q 042772          456 FMTS  459 (489)
Q Consensus       456 ~~~~  459 (489)
                      +...
T Consensus       168 ra~~  171 (323)
T KOG0594|consen  168 RAFS  171 (323)
T ss_pred             HHhc
Confidence            8554

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.96  E-value=2.2e-29  Score=256.08  Aligned_cols=182  Identities=34%  Similarity=0.614  Sum_probs=159.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|.+.+.||+|+||.||+|.++.+++.||+|.+++...........+..|+.+++.++||||+++++++.....+|+||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            36899999999999999999999999999999998765444556677888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....     
T Consensus        81 e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~  159 (330)
T cd05601          81 EYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVN  159 (330)
T ss_pred             CCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCcee
Confidence            9999999999998753 3489999999999999999999999999999999999999999999999999864321     


Q ss_pred             -----------CCce------------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KPQV------------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~~~------------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|+.            ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~  210 (330)
T cd05601         160 SKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFH  210 (330)
T ss_pred             eecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCC
Confidence                       1221            134699999999999999999984

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.96  E-value=6.6e-29  Score=252.32  Aligned_cols=180  Identities=34%  Similarity=0.621  Sum_probs=155.8

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCC-CcceeeEEEEeCCeEEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP-FLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp-nIv~l~~~~~~~~~~~lVm  385 (489)
                      +|++++.||+|+||.||+|.+..+++.||+|++.+...........+..|..++..+.|+ +|+.+++++...+.+|+||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            488999999999999999999999999999999876544455567788899999999764 6888999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....      
T Consensus        81 E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~  158 (324)
T cd05587          81 EYVNGGDLMYHIQQV--GKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTT  158 (324)
T ss_pred             cCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCce
Confidence            999999999999765  348999999999999999999999999999999999999999999999999875311      


Q ss_pred             ---------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~  202 (324)
T cd05587         159 RTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFD  202 (324)
T ss_pred             eeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCC
Confidence                     11221      134599999999999999999985

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.96  E-value=4e-29  Score=254.98  Aligned_cols=182  Identities=33%  Similarity=0.532  Sum_probs=158.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||++.++.+++.+|+|++.+...........+..|+.++..++||||+++++++.+...+|+||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            36899999999999999999999999999999997654444445566788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++|+|.+++.+.. ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....      
T Consensus        81 ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~  159 (332)
T cd05623          81 DYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQ  159 (332)
T ss_pred             eccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCcce
Confidence            9999999999997642 348999999999999999999999999999999999999999999999999875321      


Q ss_pred             ----------CCCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+.           ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~  209 (332)
T cd05623         160 SSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFY  209 (332)
T ss_pred             ecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCC
Confidence                      11222           235699999999999999999985

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=9.1e-29  Score=246.44  Aligned_cols=182  Identities=32%  Similarity=0.534  Sum_probs=158.1

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|+..+.||+|+||.||++.+..+++.||+|.+.............+.+|+.+++.++||||+++++++.....+++|||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            37889999999999999999999999999999976544334444567789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+++|+|.+++.......+++..+..++.|++.||.|||++|++||||||+||++++++.++|+|||++.....      
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  160 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRG  160 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCcccc
Confidence            99999999988765445689999999999999999999999999999999999999999999999999865321      


Q ss_pred             --------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 --------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              +|+.      ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~  202 (285)
T cd05605         161 RVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFR  202 (285)
T ss_pred             ccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCC
Confidence                    1221      124599999999999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.96  E-value=5.4e-29  Score=253.05  Aligned_cols=175  Identities=39%  Similarity=0.693  Sum_probs=152.5

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      +.||+|+||.||+|.+..+++.||+|++.+...........+..|+.++..++||||+++++++.....+|+||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            46899999999999999999999999998765545555677788999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       392 sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      +|..++...  ..+++..+..++.||+.||.|||+ +||+||||||+|||++.++.+||+|||++....           
T Consensus        81 ~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g  158 (325)
T cd05594          81 ELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCG  158 (325)
T ss_pred             cHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccC
Confidence            999998765  348999999999999999999997 799999999999999999999999999875321           


Q ss_pred             ----CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+      ....+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~  197 (325)
T cd05594         159 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  197 (325)
T ss_pred             CcccCCHHHHccCCCCCccccccccceeeeeccCCCCCC
Confidence                0111      1234699999999999999999984

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.96  E-value=9.8e-29  Score=251.91  Aligned_cols=175  Identities=31%  Similarity=0.606  Sum_probs=153.0

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.++.+++.||+|++++...........+..|..++..+ +||||++++++|.....+|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            4689999999999999999999999999876554555567788899999888 799999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 g~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g  158 (329)
T cd05588          81 GDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCG  158 (329)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccC
Confidence            9999998765  448999999999999999999999999999999999999999999999999985311           


Q ss_pred             ----CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~  197 (329)
T cd05588         159 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  197 (329)
T ss_pred             CccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcc
Confidence                01111      134699999999999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.96  E-value=9.6e-29  Score=251.00  Aligned_cols=180  Identities=34%  Similarity=0.623  Sum_probs=155.6

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +|++.+.||+|+||.||+|.+..+++.||+|.+.+..............|..++..+ .||+|+.+++++.....+|+||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            488999999999999999999999999999999876544444556677788888877 5899999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++|+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....      
T Consensus        81 E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~  158 (323)
T cd05616          81 EYVNGGDLMYQIQQV--GRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTT  158 (323)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCcc
Confidence            999999999998765  348999999999999999999999999999999999999999999999999986321      


Q ss_pred             ---------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~  202 (323)
T cd05616         159 KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE  202 (323)
T ss_pred             ccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCC
Confidence                     11211      234599999999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.96  E-value=1.1e-28  Score=250.31  Aligned_cols=175  Identities=37%  Similarity=0.637  Sum_probs=151.9

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.++.+++.||+|++.+...........+..|..++..+ +||||+++++++.....+|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            4689999999999999999999999999876544455566777899998866 799999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 ~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g  158 (321)
T cd05591          81 GDLMFQIQRS--RKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCG  158 (321)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCcccccccc
Confidence            9999998765  348999999999999999999999999999999999999999999999999886321           


Q ss_pred             ----CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+      ....+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~  197 (321)
T cd05591         159 TPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFE  197 (321)
T ss_pred             CccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCC
Confidence                0111      1234699999999999999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.96  E-value=8.5e-29  Score=251.51  Aligned_cols=178  Identities=38%  Similarity=0.663  Sum_probs=152.7

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHH---HhCCCCCcceeeEEEEeCCeEEEE
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM---SLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il---~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      |++++.||+|+||.||+|.+..+++.||+|.+++.........+.+..|+.++   +.++||||+++++++.....+|+|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            67889999999999999999999999999999866444444556677777665   456799999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||+++++|..++..   ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....     
T Consensus        81 ~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  157 (324)
T cd05589          81 MEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDR  157 (324)
T ss_pred             EcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCc
Confidence            999999999988865   348999999999999999999999999999999999999999999999999875321     


Q ss_pred             ----------CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+      ....+|+|++|++++++++|..||.
T Consensus       158 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~  202 (324)
T cd05589         158 TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFP  202 (324)
T ss_pred             ccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCC
Confidence                      0122      1234699999999999999999985

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.96  E-value=1.2e-28  Score=249.87  Aligned_cols=175  Identities=39%  Similarity=0.708  Sum_probs=150.0

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.+..+++.||+|.+++..............|..++..+ +||||+++++++.....+|+||||++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            4689999999999999999999999999876544444555666777777654 899999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~g  158 (316)
T cd05592          81 GDLMFHIQSS--GRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCG  158 (316)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccC
Confidence            9999999775  348999999999999999999999999999999999999999999999999986321           


Q ss_pred             ----CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+      ....+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~  197 (316)
T cd05592         159 TPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFH  197 (316)
T ss_pred             CccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCC
Confidence                0111      1234699999999999999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.96  E-value=1.5e-28  Score=250.69  Aligned_cols=175  Identities=31%  Similarity=0.597  Sum_probs=152.7

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.++.+++.||+|++.+...........+..|..++..+ +||||+++++++...+.+|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            4689999999999999999999999999876555555667788899888776 799999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++....           
T Consensus        81 ~~L~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~g  158 (329)
T cd05618          81 GDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCG  158 (329)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccC
Confidence            9999988765  348999999999999999999999999999999999999999999999999986321           


Q ss_pred             ----CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~  197 (329)
T cd05618         159 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  197 (329)
T ss_pred             CccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCc
Confidence                01111      235699999999999999999983

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.96  E-value=1e-28  Score=254.05  Aligned_cols=179  Identities=25%  Similarity=0.428  Sum_probs=153.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ...+.+|+.++.||+|+||.||+|.+..+++.||+|++....  .......+.+|+++++.++||||+++++++...+.+
T Consensus        70 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  147 (353)
T PLN00034         70 AKSLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH--EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEI  147 (353)
T ss_pred             CCCHHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC--cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeE
Confidence            345678999999999999999999999999999999986542  234456788999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      ++||||+++|+|.+.      ....+..+..++.||+.||.|||++||+||||||+|||+++++.+||+|||++....  
T Consensus       148 ~lv~e~~~~~~L~~~------~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~  221 (353)
T PLN00034        148 QVLLEFMDGGSLEGT------HIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQT  221 (353)
T ss_pred             EEEEecCCCCccccc------ccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecccc
Confidence            999999999998643      225678888999999999999999999999999999999999999999999986422  


Q ss_pred             -------------CCCcee-----------ecccccchHHHHHHHHhCCcccC
Q 042772          460 -------------CKPQVF-----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -------------~~~~~~-----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   ..|+.+           ..+|+|++|++++++++|..||.
T Consensus       222 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~  274 (353)
T PLN00034        222 MDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFG  274 (353)
T ss_pred             cccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCC
Confidence                         123322           24699999999999999999984

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.96  E-value=9.8e-29  Score=248.14  Aligned_cols=179  Identities=23%  Similarity=0.376  Sum_probs=153.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||+|.++.+++.||+|++.....  ......+.+|+.+++.++||||+++++++......++||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~   82 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEE--EGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVF   82 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccc--cccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEE
Confidence            579999999999999999999999999999999875432  222345677999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+ +++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....      
T Consensus        83 e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~  160 (303)
T cd07869          83 EYV-HTDLCQYMDKHP-GGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTY  160 (303)
T ss_pred             ECC-CcCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCccC
Confidence            999 468988887653 348899999999999999999999999999999999999999999999999985321      


Q ss_pred             ---------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.       ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  205 (303)
T cd07869         161 SNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFP  205 (303)
T ss_pred             CCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                     12222       223599999999999999999984

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.96  E-value=1.4e-28  Score=250.24  Aligned_cols=180  Identities=33%  Similarity=0.616  Sum_probs=155.2

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +|+..+.||+|+||.||+|.++.+++.||+|++.+...........+..|..++..+. ||+|+++++++.....+|+||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            4788899999999999999999999999999998764444455667788999988886 578889999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++|+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....      
T Consensus        81 Ey~~~g~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~  158 (323)
T cd05615          81 EYVNGGDLMYHIQQV--GKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTT  158 (323)
T ss_pred             cCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCccc
Confidence            999999999999775  348999999999999999999999999999999999999999999999999986321      


Q ss_pred             ---------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~  202 (323)
T cd05615         159 RTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFD  202 (323)
T ss_pred             cCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCC
Confidence                     01111      134599999999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.96  E-value=9.3e-29  Score=246.76  Aligned_cols=180  Identities=24%  Similarity=0.351  Sum_probs=154.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++.+.||.|+||.||+|.+..+++.||+|.++....  ......+.+|+.+++.++||||+++++++......++|
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE--EGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLV   81 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEeccccc--CCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEE
Confidence            4679999999999999999999999999999999865421  22234567899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||++ ++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++...     
T Consensus        82 ~e~~~-~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~  159 (288)
T cd07871          82 FEYLD-SDLKQYLDNCG-NLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKT  159 (288)
T ss_pred             EeCCC-cCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCcc
Confidence            99996 59999987653 347899999999999999999999999999999999999999999999999985321     


Q ss_pred             ----------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+.       ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~  205 (288)
T cd07871         160 YSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFP  205 (288)
T ss_pred             ccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                      11222       224589999999999999999984

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.96  E-value=1.5e-28  Score=249.54  Aligned_cols=175  Identities=38%  Similarity=0.653  Sum_probs=151.4

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.++.+++.||+|++.+...........+..|..++..+ +||||+++++++.....+|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            4689999999999999999999999999876544445566777888888876 699999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 g~L~~~i~~~--~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~g  158 (320)
T cd05590          81 GDLMFHIQKS--RRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCG  158 (320)
T ss_pred             chHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCccccccc
Confidence            9999998775  348999999999999999999999999999999999999999999999999876321           


Q ss_pred             ----CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~  197 (320)
T cd05590         159 TPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFE  197 (320)
T ss_pred             CccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCC
Confidence                01111      124599999999999999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.96  E-value=1.1e-28  Score=251.60  Aligned_cols=185  Identities=22%  Similarity=0.307  Sum_probs=152.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      .+..++|++.+.||+|+||.||+|.+.     .+++.||+|.+....  .......+..|+.++..+ +||||+++++++
T Consensus         3 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~   80 (338)
T cd05102           3 EFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGA--TASEHKALMSELKILIHIGNHLNVVNLLGAC   80 (338)
T ss_pred             ccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheecccccc--chHHHHHHHHHHHHHHHhccCcceeeEEeEe
Confidence            345578999999999999999999853     345789999986432  233456788899999999 899999999988


Q ss_pred             EeC-CeEEEEEecCCCCCHHHHHhhCC-----------------------------------------------------
Q 042772          376 QTS-THICLITDFCPGGELFALLDKQP-----------------------------------------------------  401 (489)
Q Consensus       376 ~~~-~~~~lVmEy~~ggsL~~~L~~~~-----------------------------------------------------  401 (489)
                      ... ..++++|||+++|+|.+++....                                                     
T Consensus        81 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
T cd05102          81 TKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPP  160 (338)
T ss_pred             cCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccc
Confidence            764 46899999999999999997532                                                     


Q ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---------------
Q 042772          402 -------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---------------  459 (489)
Q Consensus       402 -------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---------------  459 (489)
                             ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++...               
T Consensus       161 ~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~  240 (338)
T cd05102         161 QETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPL  240 (338)
T ss_pred             hhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCc
Confidence                   1247788889999999999999999999999999999999999999999999986421               


Q ss_pred             --CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 --CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 --~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                        .+|+.      ...+|+|++|++++|+++ |..||.
T Consensus       241 ~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~  278 (338)
T cd05102         241 KWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYP  278 (338)
T ss_pred             cccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCC
Confidence              11221      234599999999999986 999985

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-28  Score=255.57  Aligned_cols=181  Identities=29%  Similarity=0.470  Sum_probs=161.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~l  383 (489)
                      ...|.+.+.||.|.||.||+|..+.||+.+|+|.+++...........+.+|+++|+++. ||||+.++++|++...+++
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            356999999999999999999999999999999999887766656778899999999998 9999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC----CcEEEEecCCccccC
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD----GHVVLTDFDLSFMTS  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~----g~vKL~DFGlS~~~~  459 (489)
                      |||+|.||+|++.+...  . +++..+..++.|++.++.|||+.||+||||||+|+|+...    +.+|++|||+|....
T Consensus       114 vmEL~~GGeLfd~i~~~--~-~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~  190 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKK--H-YSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIK  190 (382)
T ss_pred             EEEecCCchHHHHHHHc--c-CCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEcc
Confidence            99999999999999887  3 8999999999999999999999999999999999999633    579999999996443


Q ss_pred             C--------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C--------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~--------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .              +|+      +....|+|+.|.++|.+++|..||.
T Consensus       191 ~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~  239 (382)
T KOG0032|consen  191 PGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFW  239 (382)
T ss_pred             CCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCc
Confidence            2              122      2234489999999999999999985

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.96  E-value=2.2e-28  Score=248.41  Aligned_cols=175  Identities=41%  Similarity=0.658  Sum_probs=148.7

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHH-HHHhCCCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE-IMSLLDHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||+||+|.++.+|+.||+|++.+...........+..|.. +++.++||||+++++++.....+|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            46899999999999999999999999997654433444455555655 46778999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  158 (323)
T cd05575          81 GELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCG  158 (323)
T ss_pred             CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccC
Confidence            9999999775  348999999999999999999999999999999999999999999999999885321           


Q ss_pred             ----CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~  197 (323)
T cd05575         159 TPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFY  197 (323)
T ss_pred             ChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCC
Confidence                11221      234699999999999999999984

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.96  E-value=2.1e-28  Score=248.09  Aligned_cols=175  Identities=41%  Similarity=0.659  Sum_probs=148.2

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHH-HHHhCCCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE-IMSLLDHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.+..+++.||+|++.+...........+..|.. +++.++||||+++++++.....+|+||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46899999999999999999999999997654433334445555554 57889999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||++....           
T Consensus        81 ~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  158 (321)
T cd05603          81 GELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCG  158 (321)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccC
Confidence            9999988765  448899999999999999999999999999999999999999999999999886321           


Q ss_pred             ----CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+.      ....|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~  197 (321)
T cd05603         159 TPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFY  197 (321)
T ss_pred             CcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCC
Confidence                11111      134699999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.96  E-value=3e-28  Score=242.09  Aligned_cols=175  Identities=32%  Similarity=0.531  Sum_probs=151.2

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCH
Q 042772          314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL  393 (489)
Q Consensus       314 LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL  393 (489)
                      ||+|+||+||+|.++.+++.||+|.+.+...........+..|+.+++.++||||+++++++.....+|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            79999999999999999999999999766544444556778899999999999999999999999999999999999999


Q ss_pred             HHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----------
Q 042772          394 FALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----------  460 (489)
Q Consensus       394 ~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----------  460 (489)
                      .+++...  ....+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++.....           
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~  160 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGT  160 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCC
Confidence            9887542  234589999999999999999999999999999999999999999999999999864321           


Q ss_pred             ----CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          +|+.      ...+|+|++|++++++++|..||.
T Consensus       161 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~  198 (280)
T cd05608         161 PGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFR  198 (280)
T ss_pred             cCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence                1111      235699999999999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=3.1e-28  Score=248.02  Aligned_cols=175  Identities=32%  Similarity=0.600  Sum_probs=153.1

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|....+++.||+|++.+.........+.+..|..++..+ .||||+.+++++.....+|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            4699999999999999999999999999876555555667788899999887 699999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 ~~L~~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  158 (327)
T cd05617          81 GDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCG  158 (327)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccC
Confidence            9999988765  348999999999999999999999999999999999999999999999999886321           


Q ss_pred             ----CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~  197 (327)
T cd05617         159 TPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFD  197 (327)
T ss_pred             CcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCC
Confidence                01111      134699999999999999999994

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.96  E-value=4.1e-28  Score=240.73  Aligned_cols=175  Identities=28%  Similarity=0.525  Sum_probs=150.7

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCH
Q 042772          314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL  393 (489)
Q Consensus       314 LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL  393 (489)
                      ||+|+||.||++..+.+|+.||+|.+.............+..|+++++.++||||+++++++....+.|+||||++|++|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            79999999999999999999999999765443333344556799999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-------------
Q 042772          394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-------------  460 (489)
Q Consensus       394 ~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-------------  460 (489)
                      .+++.......+++..+..++.|++.||.|||++|++||||||+||+++.++.++|+|||++.....             
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y  160 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGY  160 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCc
Confidence            9988765555588999999999999999999999999999999999999999999999999864321             


Q ss_pred             -CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                       +|+      ....+|+|++|++++++++|..||.
T Consensus       161 ~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~  195 (277)
T cd05607         161 MAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFK  195 (277)
T ss_pred             cCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCC
Confidence             111      1234699999999999999999984

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.96  E-value=2.4e-28  Score=248.27  Aligned_cols=175  Identities=41%  Similarity=0.647  Sum_probs=149.0

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHH-HHHhCCCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE-IMSLLDHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||+||+|.++.+|+.||+|++.+...........+..|.. +++.++||||+++++++......|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            46899999999999999999999999997654444444455556655 46778999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 ~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~g  158 (325)
T cd05604          81 GELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCG  158 (325)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccC
Confidence            9999998765  448999999999999999999999999999999999999999999999999986321           


Q ss_pred             ----CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+      ....+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~  197 (325)
T cd05604         159 TPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFY  197 (325)
T ss_pred             ChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCC
Confidence                0111      1234699999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.96  E-value=3.1e-28  Score=247.88  Aligned_cols=180  Identities=40%  Similarity=0.660  Sum_probs=153.8

Q ss_pred             CcccccccCCCCceEEEEEEEc---CCCcEEEEEEeeccccc-chHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVML-NRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~  381 (489)
                      +|++++.||+|+||.||+|...   .+++.||+|++.+.... .......+..|+.+++.+ +||||+++++++.....+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            4889999999999999999864   47899999999764332 233456678899999999 599999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      ++||||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++...  
T Consensus        81 ~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~  158 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQR--DNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSE  158 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCcccccc
Confidence            9999999999999999765  348999999999999999999999999999999999999999999999999986321  


Q ss_pred             --------------CCCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 --------------CKPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------------~~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    .+|+       ....+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~  208 (332)
T cd05614         159 EKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFT  208 (332)
T ss_pred             CCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCC
Confidence                          0122       1234699999999999999999984

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=3.1e-28  Score=246.86  Aligned_cols=175  Identities=38%  Similarity=0.705  Sum_probs=150.0

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.++.+|+.||+|.+++..............|..++..+ +||||+++++++...+.+|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            4699999999999999999999999999875433334456667788888754 899999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 g~L~~~i~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  158 (316)
T cd05620          81 GDLMFHIQDK--GRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCG  158 (316)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCC
Confidence            9999999775  348999999999999999999999999999999999999999999999999875321           


Q ss_pred             ----CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~  197 (316)
T cd05620         159 TPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFH  197 (316)
T ss_pred             CcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCC
Confidence                11221      234699999999999999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.96  E-value=5.4e-28  Score=241.08  Aligned_cols=181  Identities=31%  Similarity=0.538  Sum_probs=158.0

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |+..+.||+|+||.||+|.+..+++.||+|.+.+...........+..|+.+++.++|+||+.+++.+.....+|+||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            77888999999999999999999999999999765444444456677899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-------  460 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-------  460 (489)
                      +++++|.+++.......+++..+..++.|++.||.|||+.||+||||||+||++++++.++|+|||++.....       
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  161 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGR  161 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccCC
Confidence            9999999998765545689999999999999999999999999999999999999999999999999864321       


Q ss_pred             -------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             +|+.      ...+|+|++|++++++++|..||.
T Consensus       162 ~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~  202 (285)
T cd05630         162 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQ  202 (285)
T ss_pred             CCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCC
Confidence                   1111      124699999999999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.96  E-value=4.2e-28  Score=246.51  Aligned_cols=175  Identities=38%  Similarity=0.629  Sum_probs=146.8

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHH-HHHhCCCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE-IMSLLDHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.+..+++.||+|++.+...........+..|.. +++.++||||+++++++.....+|+||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            46999999999999999999999999997654332333334444444 56788999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 ~~L~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~g  158 (325)
T cd05602          81 GELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCG  158 (325)
T ss_pred             CcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccC
Confidence            9999999775  347899999999999999999999999999999999999999999999999986321           


Q ss_pred             ----CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+      ....+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~  197 (325)
T cd05602         159 TPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFY  197 (325)
T ss_pred             CccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCC
Confidence                0111      1235699999999999999999984

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=4.3e-28  Score=246.40  Aligned_cols=176  Identities=40%  Similarity=0.654  Sum_probs=150.2

Q ss_pred             ccccCCCCceEEEEEEEc---CCCcEEEEEEeeccccc-chHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          311 IKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVML-NRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      ++.||+|+||.||+|...   .+++.||+|++.+.... .......+..|+.+++.++||||++++++|..++.+|+|||
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEe
Confidence            367999999999999864   46889999999764322 23344567789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      |+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....       
T Consensus        81 ~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  158 (323)
T cd05584          81 YLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTH  158 (323)
T ss_pred             CCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCccc
Confidence            99999999999875  347899999999999999999999999999999999999999999999999975211       


Q ss_pred             --------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 --------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~  201 (323)
T cd05584         159 TFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFT  201 (323)
T ss_pred             ccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCC
Confidence                    11222      134699999999999999999985

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.96  E-value=7.9e-28  Score=245.30  Aligned_cols=181  Identities=23%  Similarity=0.350  Sum_probs=158.0

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++++.||+|+||.||++.+..++..+|+|.+....  .......+.+|+++++.++||||+++++++...+.+++
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (331)
T cd06649           3 KDDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   80 (331)
T ss_pred             CcccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            4578999999999999999999999999999999987542  23445678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      ||||+++++|.+++....  .+++..+..++.|++.||.|||++ +|+||||||+|||++.++.+||+|||++.....  
T Consensus        81 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  158 (331)
T cd06649          81 CMEHMDGGSLDQVLKEAK--RIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  158 (331)
T ss_pred             EeecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccccc
Confidence            999999999999998753  489999999999999999999986 699999999999999999999999999863321  


Q ss_pred             -----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~  203 (331)
T cd06649         159 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIP  203 (331)
T ss_pred             cccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence                       1221      234599999999999999999985

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=5.6e-29  Score=260.25  Aligned_cols=153  Identities=42%  Similarity=0.712  Sum_probs=144.9

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      +.+..-|..++.||-|+||.|.++...+|...||+|.+.+.....++.+..++.|..||...+++-||+||-+|++...+
T Consensus       625 KMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnL  704 (1034)
T KOG0608|consen  625 KMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNL  704 (1034)
T ss_pred             hccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCce
Confidence            34456799999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      |+||+|++||++-++|.+.  +.|.|+.++++++++.+|+++.|..|+|||||||+|||||.+|+|||+||||++
T Consensus       705 YFVMdYIPGGDmMSLLIrm--gIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCT  777 (1034)
T KOG0608|consen  705 YFVMDYIPGGDMMSLLIRM--GIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  777 (1034)
T ss_pred             EEEEeccCCccHHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccc
Confidence            9999999999999999886  569999999999999999999999999999999999999999999999999984

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.96  E-value=6.5e-28  Score=240.31  Aligned_cols=181  Identities=31%  Similarity=0.531  Sum_probs=157.4

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |+..+.||+|+||+||+|.+..+++.||+|.+.+...........+..|+++++.++|+||+.+++++...+..|++|||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            67788999999999999999999999999999765444444455677899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-------  460 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-------  460 (489)
                      +++++|.+++.......+++..+..++.|++.||.|||++||+||||||+||++++++.++|+|||++.....       
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  161 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGR  161 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccCC
Confidence            9999999988765445689999999999999999999999999999999999999999999999999854321       


Q ss_pred             -------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             +|+.      ...+|+|++|++++++++|..||.
T Consensus       162 ~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~  202 (285)
T cd05632         162 VGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFR  202 (285)
T ss_pred             CCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCC
Confidence                   1221      123599999999999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.96  E-value=5e-28  Score=245.49  Aligned_cols=175  Identities=37%  Similarity=0.672  Sum_probs=149.9

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHh-CCCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL-LDHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.+..+++.||+|.+++..............|..++.. ++||||+++++++.+...+|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            468999999999999999999999999987644333445566778888876 4899999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 g~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  158 (316)
T cd05619          81 GDLMFHIQSC--HKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCG  158 (316)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecC
Confidence            9999999765  348899999999999999999999999999999999999999999999999975321           


Q ss_pred             ----CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+      ....+|+|++|++++++++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~  197 (316)
T cd05619         159 TPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFH  197 (316)
T ss_pred             CccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCC
Confidence                1121      1234599999999999999999984

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.96  E-value=8.7e-28  Score=245.52  Aligned_cols=181  Identities=23%  Similarity=0.349  Sum_probs=157.5

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++.+.||+|+||.||+|.+..++..+|+|.+....  .......+.+|+++++.++||||++++++|...+.+++
T Consensus         3 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (333)
T cd06650           3 KDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   80 (333)
T ss_pred             chhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEE
Confidence            4568999999999999999999999999999999887542  23345678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      ||||+++|+|.+++...  ..+++..+..++.|++.||.|||++ +|+||||||+|||++.++.+||+|||++.....  
T Consensus        81 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~  158 (333)
T cd06650          81 CMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  158 (333)
T ss_pred             EEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhc
Confidence            99999999999999875  3488999999999999999999975 799999999999999999999999999864321  


Q ss_pred             -----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~  203 (333)
T cd06650         159 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIP  203 (333)
T ss_pred             cccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                       1221      234699999999999999999986

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.3e-28  Score=250.16  Aligned_cols=180  Identities=27%  Similarity=0.315  Sum_probs=153.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-eEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-HICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-~~~l  383 (489)
                      .++|.....||+|+||.||+|...+ |..||||.++......   ..+|..|+.++.+++|||+|+++|+|.+.. +.+|
T Consensus        74 T~~Fs~~~~ig~Ggfg~VYkG~l~~-~~~vAVK~~~~~~~~~---~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~L  149 (361)
T KOG1187|consen   74 TNNFSESNLIGEGGFGTVYKGVLSD-GTVVAVKRLSSNSGQG---EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLL  149 (361)
T ss_pred             HhCCchhcceecCCCeEEEEEEECC-CCEEEEEEecCCCCcc---hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEE
Confidence            3679999999999999999999886 4899999876543211   455999999999999999999999999888 5999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG---IIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g---IvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      |+||+++|+|.++|......+++|.....|+.++|.||+|||...   |+||||||+|||+|++..+||+|||+|+....
T Consensus       150 VYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~  229 (361)
T KOG1187|consen  150 VYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPE  229 (361)
T ss_pred             EEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCc
Confidence            999999999999998864326899999999999999999999754   99999999999999999999999999976543


Q ss_pred             ----------------CCcee------ecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------------KPQVF------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------------~~~~~------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                      +|++.      ..+||++||..+-|+++|..+..
T Consensus       230 ~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d  279 (361)
T KOG1187|consen  230 GDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVD  279 (361)
T ss_pred             cccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccC
Confidence                            12222      24588999999999999986543

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.96  E-value=4.9e-28  Score=240.25  Aligned_cols=179  Identities=20%  Similarity=0.278  Sum_probs=152.6

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||+|.++.+++.||+|.+..... .......+.+|+.+++.++||||+++++++.....+|+|||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEE-NEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccc-cccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            69999999999999999999999999999999976432 23345667889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |++++.+..+... . ..+++..+..++.|++.||.|||+.||+||||||+||+++.++.+||+|||++.....      
T Consensus        81 ~~~~~~l~~~~~~-~-~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  158 (287)
T cd07848          81 YVEKNMLELLEEM-P-NGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANY  158 (287)
T ss_pred             cCCCCHHHHHHhc-C-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccc
Confidence            9988766554433 2 3489999999999999999999999999999999999999999999999999864321      


Q ss_pred             ----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~  202 (287)
T cd07848         159 TEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFP  202 (287)
T ss_pred             cccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCC
Confidence                      1221      234589999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-28  Score=244.54  Aligned_cols=179  Identities=24%  Similarity=0.391  Sum_probs=156.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-----CCe
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-----STH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~~~  380 (489)
                      ..|..++.||.|+||.|..|.++.+|+.||||.+... ..+....++..+|+.+|+.++|+||+.+.+.+..     -+.
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~-F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~D  100 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNP-FENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFND  100 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhhh-hhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccce
Confidence            3566689999999999999999999999999998643 3466678899999999999999999999999876     247


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+|+|+| +.+|.+.++.+  +.++++.+..+++|+++||.|+|+.+|+||||||.|+|++.+..+||||||+|+.+..
T Consensus       101 vYiV~elM-etDL~~iik~~--~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~  177 (359)
T KOG0660|consen  101 VYLVFELM-ETDLHQIIKSQ--QDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDK  177 (359)
T ss_pred             eEEehhHH-hhHHHHHHHcC--ccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeeccc
Confidence            99999999 67999999886  3489999999999999999999999999999999999999999999999999997732


Q ss_pred             ---C-------Ccee--------------ecccccchHHHHHHHHhCCcccC
Q 042772          461 ---K-------PQVF--------------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---~-------~~~~--------------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                         .       ...|              ..-|+||.|+++-||++|...|.
T Consensus       178 ~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFp  229 (359)
T KOG0660|consen  178 FFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFP  229 (359)
T ss_pred             cCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCC
Confidence               1       1112              23389999999999999998885

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.96  E-value=7.2e-28  Score=244.23  Aligned_cols=175  Identities=37%  Similarity=0.658  Sum_probs=152.3

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+||.||+|.++.+++.||+|++.+...........+..|..++..+ +||||+++++++.....+|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            4689999999999999999999999999876554455667778899999887 699999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.|++.||.|||++||+||||||+|||+++++.+||+|||++....           
T Consensus        81 ~~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  158 (318)
T cd05570          81 GDLMFHIQRS--GRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCG  158 (318)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceec
Confidence            9999998775  348999999999999999999999999999999999999999999999999875311           


Q ss_pred             ----CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+      ....+|+|++|++++++++|..||.
T Consensus       159 ~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~  197 (318)
T cd05570         159 TPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFE  197 (318)
T ss_pred             CccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCC
Confidence                0111      1234599999999999999999985

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-28  Score=257.60  Aligned_cols=188  Identities=26%  Similarity=0.362  Sum_probs=157.3

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCc---E-EEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEE
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGE---L-YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASF  375 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~---~-vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  375 (489)
                      .+.+..++..+.+.||+|+||.||+|..+..+.   . ||+|..+.+....+.....+..|.++|++++|||||++||+.
T Consensus       151 ~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa  230 (474)
T KOG0194|consen  151 KWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVA  230 (474)
T ss_pred             ccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            345666777788999999999999999875422   3 899998764445677889999999999999999999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      ..+..+++|||+|+||+|.++|.+.+. .++..+...++.+.+.||+|||+++++||||..+|+|++.++.+||+|||+|
T Consensus       231 ~~~~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs  309 (474)
T KOG0194|consen  231 VLEEPLMLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLS  309 (474)
T ss_pred             cCCCccEEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccc
Confidence            999999999999999999999998754 4899999999999999999999999999999999999999999999999999


Q ss_pred             cccC--------C-CCcee------------ecccccchHHHHHHHHh-CCcccC
Q 042772          456 FMTS--------C-KPQVF------------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       456 ~~~~--------~-~~~~~------------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +...        + -|-.|            ..+|||+||..++|+.. |..||.
T Consensus       310 ~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~  364 (474)
T KOG0194|consen  310 RAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYP  364 (474)
T ss_pred             cCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCC
Confidence            7543        1 12222            33477777777777653 666765

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.95  E-value=4e-29  Score=258.37  Aligned_cols=183  Identities=25%  Similarity=0.463  Sum_probs=156.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe-EEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH-ICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~-~~l  383 (489)
                      .++|..++.+|+|+||.++++.++..++.|++|.+.......+. ......|+.+++++.|||||.+.+.|..++. ++|
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~-r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~I   81 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPE-RRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCI   81 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchh-hHHHHHHHHHHHhccCCCeeeeccchhcCCceEEE
Confidence            35799999999999999999999999999999999876655443 3467889999999999999999999998887 999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCCC-
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKP-  462 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~~-  462 (489)
                      ||+||+||+|.+.++++.+..++++.+..|+.|++.|+.|||+++|+|||||+.|||+++++.|||+|||+|+.....- 
T Consensus        82 vm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~  161 (426)
T KOG0589|consen   82 VMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDS  161 (426)
T ss_pred             EEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCchh
Confidence            9999999999999999877779999999999999999999999999999999999999999999999999998765321 


Q ss_pred             --------ceeecccc---cchHHHHHHHHhCCcccC
Q 042772          463 --------QVFYHAHV---NGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       463 --------~~~~~~~v---~s~g~~a~e~~~G~lpY~  488 (489)
                              .++..+.+   -.||+..|+|++||.+|+
T Consensus       162 ~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yE  198 (426)
T KOG0589|consen  162 LASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYE  198 (426)
T ss_pred             hhheecCCCcccCHHHhCCCCCCccCcchhhcchHHH
Confidence                    11111111   236777778888887774

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.95  E-value=4.5e-28  Score=245.42  Aligned_cols=175  Identities=43%  Similarity=0.716  Sum_probs=149.8

Q ss_pred             ccccCCCCceEEEEEEE---cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          311 IKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~---~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      ++.||+|+||.||++..   +.+|+.||+|++.+.... ......+..|++++++++||||+++++++.....+|+||||
T Consensus         1 l~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   79 (318)
T cd05582           1 LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK-VRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDF   79 (318)
T ss_pred             CceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcC
Confidence            36799999999999986   357899999999765432 22345567899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK------  461 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~------  461 (489)
                      +++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++......      
T Consensus        80 ~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~  157 (318)
T cd05582          80 LRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYS  157 (318)
T ss_pred             CCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceec
Confidence            9999999999765  34899999999999999999999999999999999999999999999999998643211      


Q ss_pred             ---------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ---------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ---------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               |+      ....+|+|++|++++++++|..||.
T Consensus       158 ~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~  199 (318)
T cd05582         158 FCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQ  199 (318)
T ss_pred             ccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCC
Confidence                     11      1235699999999999999999985

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.95  E-value=4.2e-28  Score=256.85  Aligned_cols=177  Identities=28%  Similarity=0.441  Sum_probs=156.0

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-C-----CCcceeeEEEEeCCe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-H-----PFLPTLYASFQTSTH  380 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-H-----pnIv~l~~~~~~~~~  380 (489)
                      +|.+++.||+|+||+|-+|.+..|++.||||+++..    .....+...|+.+|..|+ |     -|+|+++++|...++
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~----k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~H  262 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK----KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNH  262 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC----hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccc
Confidence            799999999999999999999999999999999754    445667778999999986 4     389999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC--CcEEEEecCCcccc
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD--GHVVLTDFDLSFMT  458 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~--g~vKL~DFGlS~~~  458 (489)
                      +|||+|.+ .-+|+++++.+....++...++.++.||+.||.+||+.||||+||||+||||..-  ..|||+|||.|+..
T Consensus       263 lciVfELL-~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~  341 (586)
T KOG0667|consen  263 LCIVFELL-STNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFE  341 (586)
T ss_pred             eeeeehhh-hhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEeccccccc
Confidence            99999999 6699999999988889999999999999999999999999999999999999643  47999999999754


Q ss_pred             CC------------CCcee------ecccccchHHHHHHHHhCCcccC
Q 042772          459 SC------------KPQVF------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~------------~~~~~------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..            +|+++      ..-|+||+|+++-|+.+|..+|.
T Consensus       342 ~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfp  389 (586)
T KOG0667|consen  342 SQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFP  389 (586)
T ss_pred             CCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccC
Confidence            42            12222      33499999999999999988875

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.95  E-value=7.6e-28  Score=244.44  Aligned_cols=178  Identities=21%  Similarity=0.327  Sum_probs=150.6

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----CeE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----THI  381 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----~~~  381 (489)
                      +|++.+.||+|+||.||+|.++.+++.||+|.+.... ........+.+|+.+++.++||||+++++++...     ..+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVF-EHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhh-ccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceE
Confidence            5889999999999999999999999999999986432 2233445678899999999999999999987543     358


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      |+||||+ +++|.+++....  .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++...  
T Consensus        80 ~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~  156 (338)
T cd07859          80 YVVFELM-ESDLHQVIKAND--DLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFND  156 (338)
T ss_pred             EEEEecC-CCCHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccc
Confidence            9999999 579999987653  48999999999999999999999999999999999999999999999999986421  


Q ss_pred             ----------------CCCce--------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------------CKPQV--------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------------~~~~~--------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                      .+|+.        ...+|+|++|++++++++|..||.
T Consensus       157 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~  209 (338)
T cd07859         157 TPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFP  209 (338)
T ss_pred             cCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCC
Confidence                            11221        123589999999999999999984

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=4.8e-28  Score=246.41  Aligned_cols=173  Identities=38%  Similarity=0.622  Sum_probs=147.1

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC---CCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       314 LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      ||+|+||+||+|.++.+++.||+|++.+..............|..++..+   .||||+.+++++.....+|+||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            79999999999999999999999999765443344455566677777655   699999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------  459 (489)
                      |+|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....           
T Consensus        81 g~L~~~l~~~--~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~g  158 (330)
T cd05586          81 GELFWHLQKE--GRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCG  158 (330)
T ss_pred             ChHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccC
Confidence            9999998765  448999999999999999999999999999999999999999999999999986321           


Q ss_pred             ----CCCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+       ....+|+|++|+++++|++|..||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~  198 (330)
T cd05586         159 TTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFY  198 (330)
T ss_pred             CccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCC
Confidence                1122       1234699999999999999999984

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.1e-28  Score=253.81  Aligned_cols=178  Identities=26%  Similarity=0.387  Sum_probs=158.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ...|...+.||+|+.|.||.|....+++.||+|.++....   ....-+.+|+.+|+..+|+|||.+++.|...+.+|+|
T Consensus       272 ~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q---~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVV  348 (550)
T KOG0578|consen  272 RSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQ---PKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVV  348 (550)
T ss_pred             hhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccC---CchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEE
Confidence            3568899999999999999999999999999999987643   3346678999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||++||+|-+.+...   .++|.++..++.+++.||+|||.+||+|||||.+|||++.+|.+||+|||++....+    
T Consensus       349 MEym~ggsLTDvVt~~---~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~K  425 (550)
T KOG0578|consen  349 MEYMEGGSLTDVVTKT---RMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSK  425 (550)
T ss_pred             EeecCCCchhhhhhcc---cccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccCc
Confidence            9999999999998764   389999999999999999999999999999999999999999999999999865442    


Q ss_pred             -----CCceeec------------ccccchHHHHHHHHhCCcccC
Q 042772          461 -----KPQVFYH------------AHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----~~~~~~~------------~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           ...+|++            .|+|++|.++.||.-|..||.
T Consensus       426 R~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYl  470 (550)
T KOG0578|consen  426 RSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYL  470 (550)
T ss_pred             cccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCcc
Confidence                 2334433            388999999999999999997

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=4.3e-28  Score=248.89  Aligned_cols=180  Identities=31%  Similarity=0.442  Sum_probs=158.2

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      -|.+.+.||+|.|..|.+|++.-||..||+|++++..+.. .....+..|+..|+.++|||||++|.+..++..+|||+|
T Consensus        19 LYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~-~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   19 LYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDT-LSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             eehhhhhhcCCceehhhhhhhhcccceeEEEEecccccch-hhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            4889999999999999999999999999999999877643 344567789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe-cCCcEEEEecCCccccC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-KDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld-~~g~vKL~DFGlS~~~~------  459 (489)
                      +=.+|+|++|+.++..+ +.|+.+..++.||+.|+.|+|+..+|||||||+||++. +-|.|||+|||+|....      
T Consensus        98 LGD~GDl~DyImKHe~G-l~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~  176 (864)
T KOG4717|consen   98 LGDGGDLFDYIMKHEEG-LNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLT  176 (864)
T ss_pred             ecCCchHHHHHHhhhcc-ccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcchhh
Confidence            99999999999887544 89999999999999999999999999999999998775 56899999999995321      


Q ss_pred             --------CCCcee-------ecccccchHHHHHHHHhCCcccC
Q 042772          460 --------CKPQVF-------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~~~~~~-------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .+|+..       ...++|++|+++|.+.||..||.
T Consensus       177 TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFq  220 (864)
T KOG4717|consen  177 TSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQ  220 (864)
T ss_pred             cccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccc
Confidence                    223222       23389999999999999999995

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.95  E-value=3.7e-27  Score=236.56  Aligned_cols=182  Identities=24%  Similarity=0.328  Sum_probs=149.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcC----------------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCc
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQG----------------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL  368 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~----------------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI  368 (489)
                      .++|++.+.||+|+||.||+|.+..                ++..||+|.+....  .......+.+|+.++..++||||
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~ni   81 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA--NKNARNDFLKEVKILSRLKDPNI   81 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC--CHHHHHHHHHHHHHHhhcCCCCe
Confidence            4579999999999999999998642                34579999986542  34445678899999999999999


Q ss_pred             ceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCee
Q 042772          369 PTLYASFQTSTHICLITDFCPGGELFALLDKQP-----------------MKIFREDSARFYAAEVVIGLEYLHCLGIIY  431 (489)
Q Consensus       369 v~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~-----------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvH  431 (489)
                      +++++++......++||||+++|+|.+++....                 ...+++..+..++.||+.||.|||++||+|
T Consensus        82 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH  161 (304)
T cd05096          82 IRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVH  161 (304)
T ss_pred             eEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            999999999999999999999999999986531                 123577888999999999999999999999


Q ss_pred             cCCCCCCEEEecCCcEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh--CCcc
Q 042772          432 RDLKPENILLQKDGHVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT--GYFT  486 (489)
Q Consensus       432 rDLKP~NILld~~g~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~--G~lp  486 (489)
                      |||||+|||++.++.+||+|||+++....                 +|+      ....+|+|++|++++++++  |..|
T Consensus       162 ~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p  241 (304)
T cd05096         162 RDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQP  241 (304)
T ss_pred             cCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999864311                 111      1234588999999999876  4566


Q ss_pred             cC
Q 042772          487 YV  488 (489)
Q Consensus       487 Y~  488 (489)
                      |.
T Consensus       242 ~~  243 (304)
T cd05096         242 YG  243 (304)
T ss_pred             CC
Confidence            63

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.95  E-value=2.9e-27  Score=232.83  Aligned_cols=183  Identities=16%  Similarity=0.225  Sum_probs=154.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEc---CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      +...+|++.+.||+|+||.||+|.++   ..+..||+|.++...  .......+..|+.+++.++||||+++++++....
T Consensus         2 i~~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   79 (266)
T cd05064           2 LDNKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGC--SDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGN   79 (266)
T ss_pred             CchHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCC--CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCC
Confidence            34567999999999999999999875   446799999987542  2344567888999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||++|++||||||+|||++.++.++++|||.+....
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~  158 (266)
T cd05064          80 TMMIVTEYMSNGALDSFLRKHE-GQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDK  158 (266)
T ss_pred             CcEEEEEeCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCccccccc
Confidence            9999999999999999997653 358999999999999999999999999999999999999999999999999864321


Q ss_pred             ----------------CCCc------eeecccccchHHHHHHHH-hCCcccC
Q 042772          460 ----------------CKPQ------VFYHAHVNGFYFIMYKWL-TGYFTYV  488 (489)
Q Consensus       460 ----------------~~~~------~~~~~~v~s~g~~a~e~~-~G~lpY~  488 (489)
                                      .+|+      ....+|+|++|+++++++ +|..||.
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~  210 (266)
T cd05064         159 SEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYW  210 (266)
T ss_pred             ccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcC
Confidence                            0111      113469999999999965 5999984

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.95  E-value=5.4e-27  Score=233.83  Aligned_cols=180  Identities=41%  Similarity=0.730  Sum_probs=159.8

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||++.+..+++.+|+|.+.+...........+..|+++++.++||||+++++++......|+|||
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME   81 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence            68999999999999999999999999999999977654455566788899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+++++|.+++...  ..+++..+..++.|++.||.|||++|++|+||+|+||+++.++.+||+|||++.....      
T Consensus        82 ~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~  159 (290)
T cd05580          82 YVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLC  159 (290)
T ss_pred             cCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCC
Confidence            99999999999876  4589999999999999999999999999999999999999999999999999864321      


Q ss_pred             ------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            +|+.      ....|+|++|++++++++|..||.
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  199 (290)
T cd05580         160 GTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFF  199 (290)
T ss_pred             CCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence                  1221      124599999999999999999985

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=3.1e-27  Score=247.36  Aligned_cols=173  Identities=21%  Similarity=0.284  Sum_probs=149.4

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +...+|++++.||+|+||.||+|.+..+++.||+|....         ..+.+|+.+++.++||||++++++|......+
T Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~---------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~  159 (391)
T PHA03212         89 IEKAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR---------GGTATEAHILRAINHPSIIQLKGTFTYNKFTC  159 (391)
T ss_pred             cccCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh---------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeE
Confidence            344679999999999999999999999999999996532         34567999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      ++||++ +++|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+...   
T Consensus       160 lv~e~~-~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~  236 (391)
T PHA03212        160 LILPRY-KTDLYCYLAAK--RNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDIN  236 (391)
T ss_pred             EEEecC-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCccccccccc
Confidence            999999 57999998765  348899999999999999999999999999999999999999999999999985321   


Q ss_pred             -------------CCCce------eecccccchHHHHHHHHhCCccc
Q 042772          460 -------------CKPQV------FYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       460 -------------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                                   .+|+.      ...+|+|++|++++++++|..||
T Consensus       237 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~  283 (391)
T PHA03212        237 ANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSL  283 (391)
T ss_pred             ccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence                         12222      22458999999999999998764

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.95  E-value=6.3e-28  Score=256.64  Aligned_cols=182  Identities=29%  Similarity=0.379  Sum_probs=153.7

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST------  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~------  379 (489)
                      +.|...+.||+|+||.||+++++.+|+.||+|.+++..  ....++...+|+++|++++|||||++++.-.+..      
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~--~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~   90 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKES--SLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTR   90 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhc--ccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccc
Confidence            35778899999999999999999999999999997643  4455678889999999999999999998765433      


Q ss_pred             eEEEEEecCCCCCHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec--CC--cEEEEecCC
Q 042772          380 HICLITDFCPGGELFALLDKQ-PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK--DG--HVVLTDFDL  454 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~-~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~--~g--~vKL~DFGl  454 (489)
                      ...++||||+||+|...|.+- ....|++.+.+.++..++.||.|||++||+||||||.||++..  +|  ..||+|||.
T Consensus        91 ~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~  170 (732)
T KOG4250|consen   91 LPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGA  170 (732)
T ss_pred             cceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccc
Confidence            468999999999999999863 2234999999999999999999999999999999999999953  34  469999999


Q ss_pred             ccccCCCC---------------------ceeecccccchHHHHHHHHhCCcccCC
Q 042772          455 SFMTSCKP---------------------QVFYHAHVNGFYFIMYKWLTGYFTYVP  489 (489)
Q Consensus       455 S~~~~~~~---------------------~~~~~~~v~s~g~~a~e~~~G~lpY~~  489 (489)
                      |+.+....                     .+....|.|++|+++|+-++|.+||.|
T Consensus       171 Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p  226 (732)
T KOG4250|consen  171 ARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIP  226 (732)
T ss_pred             cccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCc
Confidence            98665321                     112234889999999999999999986

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.95  E-value=4.6e-27  Score=233.63  Aligned_cols=181  Identities=22%  Similarity=0.328  Sum_probs=147.7

Q ss_pred             cCcccccccCCCCceEEEEEEEcC-CCcEEEEEEeecccccchHHHHHHHHHHHHHHhC---CCCCcceeeEEEE-----
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQG-AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFLPTLYASFQ-----  376 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~-tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~-----  376 (489)
                      ++|++++.||+|+||.||+|.+.. +++.||+|.+....... .....+.+|+.+++.+   +||||+++++++.     
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~   79 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   79 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC-CchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC
Confidence            369999999999999999999854 46889999987543222 2223455677776665   6999999999885     


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          377 TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      ....+++||||++ ++|.+++.......+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus        80 ~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~  158 (290)
T cd07862          80 RETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR  158 (290)
T ss_pred             CCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceE
Confidence            2456999999995 699999987655568999999999999999999999999999999999999999999999999986


Q ss_pred             ccCC--------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSC--------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~--------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....              +|+      ....+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~  210 (290)
T cd07862         159 IYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFR  210 (290)
T ss_pred             eccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcC
Confidence            4321              121      1234599999999999999999984

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=5.6e-27  Score=236.33  Aligned_cols=182  Identities=55%  Similarity=0.936  Sum_probs=160.8

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||+|....+++.||+|.+.+.........+.+..|+++++.++||||+++++.+......|+|||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            68999999999999999999999999999999987655444567788999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+.+++|.+++.......+++..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++.....      
T Consensus        82 ~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~  161 (316)
T cd05574          82 YCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVS  161 (316)
T ss_pred             ecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhcccccccccc
Confidence            99999999999876556789999999999999999999999999999999999999999999999998754321      


Q ss_pred             --------------------------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 --------------------------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------------------------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                                            +|+      ....+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~  233 (316)
T cd05574         162 KALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFK  233 (316)
T ss_pred             cccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCC
Confidence                                                  011      1124589999999999999999984

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.95  E-value=3.7e-27  Score=237.38  Aligned_cols=180  Identities=22%  Similarity=0.339  Sum_probs=153.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|.+.+.||+|+||.||+|.++.+++.||+|.++....  ......+.+|+.+++.++||||+++++++..+...++|
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   82 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHE--EGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLV   82 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeecccc--CCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEE
Confidence            3579999999999999999999999999999999875432  22234566799999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||++ ++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....     
T Consensus        83 ~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  160 (309)
T cd07872          83 FEYLD-KDLKQYMDDCG-NIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKT  160 (309)
T ss_pred             EeCCC-CCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCCccc
Confidence            99996 58998887653 347899999999999999999999999999999999999999999999999985321     


Q ss_pred             ----------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+.       ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~  206 (309)
T cd07872         161 YSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFP  206 (309)
T ss_pred             cccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                      11221       224589999999999999999984

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.95  E-value=2.8e-27  Score=245.92  Aligned_cols=184  Identities=22%  Similarity=0.312  Sum_probs=153.5

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCC-----CcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGA-----GELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQ  376 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~t-----g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  376 (489)
                      +..++|++.+.||+|+||.||+|.+..+     +..||+|.+....  .......+..|+.+++.+ +||||+++++++.
T Consensus        35 ~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~  112 (374)
T cd05106          35 FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASA--HTDEREALMSELKILSHLGQHKNIVNLLGACT  112 (374)
T ss_pred             ccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCC--CHHHHHHHHHHHHHHHhhccCCceeeEeeEec
Confidence            3456799999999999999999986544     3589999997543  233456788899999999 8999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCC-------------------------------------------------------
Q 042772          377 TSTHICLITDFCPGGELFALLDKQP-------------------------------------------------------  401 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~-------------------------------------------------------  401 (489)
                      ....+++||||+++|+|.+++....                                                       
T Consensus       113 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (374)
T cd05106         113 HGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSS  192 (374)
T ss_pred             CCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccc
Confidence            9999999999999999999986421                                                       


Q ss_pred             -------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--------
Q 042772          402 -------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--------  460 (489)
Q Consensus       402 -------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--------  460 (489)
                                   ...+++..+..++.||+.||.|||++||+||||||+|||+++++.+||+|||+++....        
T Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~  272 (374)
T cd05106         193 QSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKG  272 (374)
T ss_pred             ccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeecc
Confidence                         12478888999999999999999999999999999999999999999999999864211        


Q ss_pred             ---------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ---------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ---------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                               +|+      ....+|+|++|++++++++ |..||.
T Consensus       273 ~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~  316 (374)
T cd05106         273 NARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYP  316 (374)
T ss_pred             CCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCc
Confidence                     111      1234599999999999986 999984

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.95  E-value=4.8e-28  Score=241.48  Aligned_cols=174  Identities=24%  Similarity=0.378  Sum_probs=142.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--C---eE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--T---HI  381 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~---~~  381 (489)
                      .|...+.+|+|+||.||.|....+++.||||.+-....       .--+|.++|+.++|||||++.-+|...  .   .+
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r-------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~l   97 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR-------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYL   97 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC-------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHH
Confidence            48889999999999999999999999999998865421       112499999999999999999888643  2   56


Q ss_pred             EEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-CcEEEEecCCcccc
Q 042772          382 CLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-GHVVLTDFDLSFMT  458 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-g~vKL~DFGlS~~~  458 (489)
                      .+||||+|. +|.+.++..  .+..++.-.++.+..||++||.|||+.||+||||||.|+|+|.+ |.+||||||.|..+
T Consensus        98 nlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L  176 (364)
T KOG0658|consen   98 NLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVL  176 (364)
T ss_pred             HHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceee
Confidence            789999975 999999842  22347888899999999999999999999999999999999965 89999999999765


Q ss_pred             CC-C--------------------CceeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC-K--------------------PQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~-~--------------------~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .. .                    .++...-|+||.|+.+-|++.|...|.
T Consensus       177 ~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFp  227 (364)
T KOG0658|consen  177 VKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFP  227 (364)
T ss_pred             ccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccC
Confidence            31 1                    122223388999999999998888774

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.95  E-value=3.2e-27  Score=244.63  Aligned_cols=178  Identities=22%  Similarity=0.373  Sum_probs=152.3

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----eE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----HI  381 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----~~  381 (489)
                      +|++.+.||+|+||.||+|.+..+++.||+|.+.... .......++.+|+.+++.++||||+++++++....     ..
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   79 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVF-QNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEI   79 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccc-cchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceE
Confidence            4888999999999999999999999999999986432 23334567888999999999999999999998776     79


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+||||+. ++|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.... 
T Consensus        80 ~lv~e~~~-~~l~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~  156 (372)
T cd07853          80 YVVTELMQ-SDLHKIIVSP--QPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPD  156 (372)
T ss_pred             EEEeeccc-cCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccC
Confidence            99999995 6898888664  4589999999999999999999999999999999999999999999999999864221 


Q ss_pred             ---------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+       .....|+|++|++++++++|..||.
T Consensus       157 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  206 (372)
T cd07853         157 ESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQ  206 (372)
T ss_pred             ccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCC
Confidence                           111       1234599999999999999999984

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.95  E-value=7.8e-27  Score=227.42  Aligned_cols=180  Identities=23%  Similarity=0.459  Sum_probs=157.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||.|+||.||++.+..+++.+|+|.+....  .....+.+..|..+++.++||||+++++++.+...+|++||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPK--SSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVME   78 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCc--chHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence            4888999999999999999999999999999986432  23456778889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-----  461 (489)
                      |+++++|.+++.......+++..+..++.|++.||.|||++|++|+||||+||++++++.++|+|||++......     
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~  158 (255)
T cd08219          79 YCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYAC  158 (255)
T ss_pred             eCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeecccccccc
Confidence            999999999998765566899999999999999999999999999999999999999999999999998643211     


Q ss_pred             ----------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          462 ----------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ----------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                |+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~  201 (255)
T cd08219         159 TYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQ  201 (255)
T ss_pred             cccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCC
Confidence                      111      134589999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.95  E-value=5e-27  Score=241.89  Aligned_cols=178  Identities=23%  Similarity=0.389  Sum_probs=150.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----  379 (489)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|.+..... .......+.+|+.+++.++||||+++++++....     
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQ-NQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEeccccc-chhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            4689999999999999999999999999999999975432 3344567788999999999999999999986543     


Q ss_pred             -eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          380 -HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       380 -~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                       .+|+||||++ ++|.+.+..    .+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+|||+++..
T Consensus        99 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~  173 (359)
T cd07876          99 QDVYLVMELMD-ANLCQVIHM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  173 (359)
T ss_pred             ceeEEEEeCCC-cCHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCcccc
Confidence             5799999995 577777643    2788999999999999999999999999999999999999999999999998632


Q ss_pred             C--------------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          459 S--------------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~--------------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .              .+|+.      ...+|+|++|++++++++|..||.
T Consensus       174 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~  223 (359)
T cd07876         174 CTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQ  223 (359)
T ss_pred             ccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence            1              12222      234599999999999999999984

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.95  E-value=4.9e-28  Score=232.72  Aligned_cols=182  Identities=26%  Similarity=0.420  Sum_probs=154.5

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccc-----cchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEe
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM-----LNRNKVHRACIEREIMSLL-DHPFLPTLYASFQT  377 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~-----~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~  377 (489)
                      .+..|...+.||.|..+.|.++.++.+|+.+|+|++.....     ...........|+.||+++ .||+|+.+.++|++
T Consensus        15 fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes   94 (411)
T KOG0599|consen   15 FYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYES   94 (411)
T ss_pred             HHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccC
Confidence            35679999999999999999999999999999999965322     1223345667799999997 69999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      +..+++|+|.|+.|.|+++|...  -++++..++.++.|+..|++|||.++||||||||+|||++++..+||+|||+|+.
T Consensus        95 ~sF~FlVFdl~prGELFDyLts~--VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~  172 (411)
T KOG0599|consen   95 DAFVFLVFDLMPRGELFDYLTSK--VTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQ  172 (411)
T ss_pred             cchhhhhhhhcccchHHHHhhhh--eeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeec
Confidence            99999999999999999999875  4599999999999999999999999999999999999999999999999999975


Q ss_pred             cCC--------------------------CCceeecccccchHHHHHHHHhCCccc
Q 042772          458 TSC--------------------------KPQVFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       458 ~~~--------------------------~~~~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      +..                          .|-+....|.|+.|++++-++.||.||
T Consensus       173 l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPF  228 (411)
T KOG0599|consen  173 LEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPF  228 (411)
T ss_pred             cCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCch
Confidence            441                          122222336677788888888888776

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.95  E-value=6e-27  Score=251.26  Aligned_cols=180  Identities=22%  Similarity=0.281  Sum_probs=153.7

Q ss_pred             cCcccccccCCCCceEEEEEEEcCC-CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGA-GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~t-g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..|.+.+.||+|+||.||+|....+ ++.||+|.+...   .......+..|+.+++.++||||+++++++...+.+|+|
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~---~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv  143 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLN---DERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLI  143 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccC---CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEE
Confidence            3599999999999999999998877 788999976433   334456677899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          385 TDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      |||+++|+|.+++...  ...++++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|+....  
T Consensus       144 ~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~  223 (478)
T PTZ00267        144 MEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSV  223 (478)
T ss_pred             EECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCcc
Confidence            9999999999988642  234589999999999999999999999999999999999999999999999999864321  


Q ss_pred             ---------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+      ....+|+|++|++++++++|..||.
T Consensus       224 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~  272 (478)
T PTZ00267        224 SLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFK  272 (478)
T ss_pred             ccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCC
Confidence                           111      1123489999999999999999985

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.95  E-value=1.4e-26  Score=225.03  Aligned_cols=181  Identities=25%  Similarity=0.424  Sum_probs=158.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|.+.+.||+|++|.||+|.++.+++.|++|.+..... .......+..|+.+++.++||||+++++++......++|||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKM-NRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVME   79 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhC-CHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEE
Confidence            47888999999999999999999999999999875433 34456778889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+++++|.+++.......+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.....      
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~  159 (256)
T cd08529          80 YAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFAN  159 (256)
T ss_pred             eCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchhh
Confidence            99999999999876555689999999999999999999999999999999999999999999999998764321      


Q ss_pred             ---------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +|+.      ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  202 (256)
T cd08529         160 TIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFD  202 (256)
T ss_pred             ccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCC
Confidence                     1111      134699999999999999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.95  E-value=8.9e-27  Score=228.28  Aligned_cols=183  Identities=18%  Similarity=0.304  Sum_probs=158.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||+|....+++.||+|.++............+..|+.+++.++||||+++++++...+..+++|
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            57999999999999999999999999999999887654445556677888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC----
Q 042772          386 DFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS----  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~----  459 (489)
                      ||+++++|.+++...  ....+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++....    
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~  161 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhH
Confidence            999999999988642  22447899999999999999999999999999999999999999999999999876422    


Q ss_pred             -----------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 -----------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 .+|+.      ...+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~  207 (267)
T cd08228         162 AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFY  207 (267)
T ss_pred             HHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCc
Confidence                       11222      123589999999999999999984

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.95  E-value=5.7e-27  Score=243.67  Aligned_cols=184  Identities=21%  Similarity=0.317  Sum_probs=153.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEE-----cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVEL-----QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQ  376 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~-----~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  376 (489)
                      +..++|++.+.||+|+||.||+|.+     ..++..||+|+++...  .....+.+.+|+.++..+ +||||+++++++.
T Consensus        32 ~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~--~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~  109 (375)
T cd05104          32 FPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSA--HLTEREALMSELKVLSYLGNHINIVNLLGACT  109 (375)
T ss_pred             cchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCc--CcHHHHHHHHHHHHHHHhcCCcceeeeeeeec
Confidence            4456799999999999999999974     3457789999986542  233456788899999999 8999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCC-------------------------------------------------------
Q 042772          377 TSTHICLITDFCPGGELFALLDKQP-------------------------------------------------------  401 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~-------------------------------------------------------  401 (489)
                      .....++||||+++|+|.+++....                                                       
T Consensus       110 ~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  189 (375)
T cd05104         110 VGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSV  189 (375)
T ss_pred             cCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccc
Confidence            9999999999999999999986532                                                       


Q ss_pred             ------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          402 ------------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       402 ------------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                                        ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....   
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  269 (375)
T cd05104         190 RSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSN  269 (375)
T ss_pred             ccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCccc
Confidence                              12467888999999999999999999999999999999999999999999999853221   


Q ss_pred             --------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 --------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 --------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                    +|+      ....+|+|++|++++++++ |..||.
T Consensus       270 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~  318 (375)
T cd05104         270 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYP  318 (375)
T ss_pred             ccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCC
Confidence                          111      1234589999999999986 888874

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.95  E-value=1.8e-27  Score=250.07  Aligned_cols=183  Identities=28%  Similarity=0.452  Sum_probs=161.4

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      .....|.+.+.||+|.|+.|.+|.+..|+..||||.+++.... ...++.+.+|+++|+.++|||||+++.+...+..+|
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln-~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~ly  131 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLN-PSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLY  131 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccC-hHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeE
Confidence            3456799999999999999999999999999999999987654 444555899999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      +||||+.+|.+++++..+..  ..+..++.++.|++.|++|||+++|+|||||++||||+.+..+||+|||+|....   
T Consensus       132 lV~eya~~ge~~~yl~~~gr--~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~  209 (596)
T KOG0586|consen  132 LVMEYASGGELFDYLVKHGR--MKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGL  209 (596)
T ss_pred             EEEEeccCchhHHHHHhccc--chhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeecccc
Confidence            99999999999999998744  6779999999999999999999999999999999999999999999999996433   


Q ss_pred             -----CC------C-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          460 -----CK------P-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----~~------~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           |.      |       ......|+|++|..+|-+..|.+||+
T Consensus       210 ~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFD  256 (596)
T KOG0586|consen  210 MLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFD  256 (596)
T ss_pred             cccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccC
Confidence                 11      1       11233488999999999999999986

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.95  E-value=1.6e-26  Score=233.10  Aligned_cols=178  Identities=23%  Similarity=0.357  Sum_probs=155.7

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||++.+..++..+|+|.+....  .......+.+|+++++.++||||+++++++..++.++++||
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   79 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI--KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICME   79 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEee
Confidence            6999999999999999999999999999999886532  33455678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      |+++++|.+++...  ..+++..+..++.|++.||.|||+ .+++|+||||+|||++.++.+||+|||++.....     
T Consensus        80 y~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  157 (308)
T cd06615          80 HMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANS  157 (308)
T ss_pred             ccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCccccccccccc
Confidence            99999999999875  448999999999999999999997 5999999999999999999999999998864221     


Q ss_pred             --------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 --------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              +|+      ....+|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~  199 (308)
T cd06615         158 FVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIP  199 (308)
T ss_pred             CCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCC
Confidence                    111      1234689999999999999999984

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.95  E-value=1.6e-26  Score=225.00  Aligned_cols=181  Identities=27%  Similarity=0.475  Sum_probs=158.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|+.++.||.|+||.||.+....+++.+++|.+..... .......+.+|++++++++||||+++++++.....++++||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e   79 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRL-SEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEME   79 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeeccc-chhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEE
Confidence            58999999999999999999999999999999875433 23445678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-----  461 (489)
                      |+++++|.+++.......+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.+||+|||++......     
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~  159 (256)
T cd08221          80 YANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAE  159 (256)
T ss_pred             ecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEccccccccc
Confidence            999999999998765556899999999999999999999999999999999999999999999999988643211     


Q ss_pred             ----------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          462 ----------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ----------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                |+.      ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~  202 (256)
T cd08221         160 TVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFD  202 (256)
T ss_pred             ccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCC
Confidence                      111      134699999999999999999885

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.95  E-value=8e-27  Score=262.05  Aligned_cols=183  Identities=24%  Similarity=0.305  Sum_probs=156.0

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+...........+++.+|+.+++.++||||+++++++.+.+..|++|
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            57999999999999999999999999999999997654434445677889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCC---------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          386 DFCPGGELFALLDKQP---------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~---------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      ||++||+|.+++....         ...++...+..++.||+.||.|||++||+||||||+||+++.+|.+||+|||++.
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk  161 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAI  161 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcce
Confidence            9999999999986421         1224566778899999999999999999999999999999999999999999986


Q ss_pred             ccC----------------------------C-----CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          457 MTS----------------------------C-----KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~----------------------------~-----~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...                            .     +|+.      ...+|+|++|++++++++|..||.
T Consensus       162 ~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~  232 (932)
T PRK13184        162 FKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYR  232 (932)
T ss_pred             ecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCC
Confidence            441                            0     1111      123489999999999999999984

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.95  E-value=8.1e-27  Score=228.58  Aligned_cols=183  Identities=20%  Similarity=0.334  Sum_probs=158.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||+|....++..+|+|.+.............+..|+.+++.++||||+++++++......+++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            57999999999999999999999999999999887654445556678889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          386 DFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      ||+++++|.+++...  ....+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.....   
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCc
Confidence            999999999998742  234589999999999999999999999999999999999999999999999998754321   


Q ss_pred             ------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+.      ...+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  207 (267)
T cd08229         162 AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFY  207 (267)
T ss_pred             ccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcc
Confidence                        1211      123599999999999999999984

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.95  E-value=5.9e-27  Score=228.67  Aligned_cols=180  Identities=36%  Similarity=0.615  Sum_probs=160.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||.|+||.||+|.+..+++.||+|.+.+.........+.+..|++++++++||||+++++++......++|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            48899999999999999999999999999999987655555567889999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-----  461 (489)
                      |+++++|.+++...  ..+++..+..++.|++.||.|||++|++|+||+|+||++++++.++|+|||++......     
T Consensus        81 ~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~  158 (258)
T cd05578          81 LLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTS  158 (258)
T ss_pred             CCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCccccc
Confidence            99999999999875  35899999999999999999999999999999999999999999999999988643211     


Q ss_pred             ---------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          462 ---------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ---------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               |+.      ...+|+|++|.+++++++|..||.
T Consensus       159 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  200 (258)
T cd05578         159 TSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYR  200 (258)
T ss_pred             cCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCC
Confidence                     111      235699999999999999999986

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-27  Score=258.30  Aligned_cols=157  Identities=29%  Similarity=0.384  Sum_probs=139.5

Q ss_pred             cCCCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEE-
Q 042772          297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYAS-  374 (489)
Q Consensus       297 ~~~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~-  374 (489)
                      .|....++..++++.+.|.+|||+.||+|.+...|..||+|.+-.   .+...+..+++|+++|++|. |+|||.++++ 
T Consensus        28 ~G~~~~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~---~de~~L~~v~~EI~~MK~L~gh~nIV~yidss  104 (738)
T KOG1989|consen   28 VGQTFTVGSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYV---NDEEALNAVKREIDIMKLLSGHKNIVSYIDSS  104 (738)
T ss_pred             CceEEEECCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeec---CCHHHHHHHHHHHHHHHHhcCCCceeeEeccc
Confidence            344556777899999999999999999999998889999998843   36778899999999999996 9999999993 


Q ss_pred             EEeC------CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEecCCc
Q 042772          375 FQTS------THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQKDGH  446 (489)
Q Consensus       375 ~~~~------~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld~~g~  446 (489)
                      ....      -.++|+||||+||.|-++|..+....|++.+++.|+.|+|+||.+||...  |||||||-|||||+.+|+
T Consensus       105 ~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~  184 (738)
T KOG1989|consen  105 AINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGN  184 (738)
T ss_pred             cccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCC
Confidence            3221      25899999999999999999765566999999999999999999999988  999999999999999999


Q ss_pred             EEEEecCCcc
Q 042772          447 VVLTDFDLSF  456 (489)
Q Consensus       447 vKL~DFGlS~  456 (489)
                      .||||||.++
T Consensus       185 ~KLCDFGSat  194 (738)
T KOG1989|consen  185 YKLCDFGSAT  194 (738)
T ss_pred             EEeCcccccc
Confidence            9999999986

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.95  E-value=1.3e-26  Score=227.41  Aligned_cols=179  Identities=22%  Similarity=0.323  Sum_probs=155.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..+|++.+.||+|+||.||+|.+..+++.||+|++....   ......+..|+.+++.++||||+++++++.....+++|
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~---~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv   84 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEP---GDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWIC   84 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCc---cchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEE
Confidence            467999999999999999999999999999999986542   22345677899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+||+++.++.++|+|||++....     
T Consensus        85 ~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~  162 (267)
T cd06646          85 MEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAK  162 (267)
T ss_pred             EeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeecccccc
Confidence            9999999999998765  348999999999999999999999999999999999999999999999999885321     


Q ss_pred             ----------CCCcee---------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQVF---------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~~---------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+..         ..+|+|++|++++++++|..||.
T Consensus       163 ~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~  210 (267)
T cd06646         163 RKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMF  210 (267)
T ss_pred             cCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCcc
Confidence                      112211         24689999999999999999873

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.95  E-value=8.4e-27  Score=235.71  Aligned_cols=181  Identities=24%  Similarity=0.327  Sum_probs=151.6

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcE----EEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGEL----YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~----vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ...+|+..+.||+|+||.||+|.+..++..    ||+|.++..  ......+.+..|+.+++.++||||+++++++... 
T Consensus         5 ~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-   81 (316)
T cd05108           5 KETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA--TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-   81 (316)
T ss_pred             chhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEecccc--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-
Confidence            346799999999999999999998766654    899988643  2344566788899999999999999999998765 


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++++||+++|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...
T Consensus        82 ~~~~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~  160 (316)
T cd05108          82 TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  160 (316)
T ss_pred             CceeeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEcccccccccc
Confidence            5789999999999999998753 347889999999999999999999999999999999999999999999999997432


Q ss_pred             C-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 C-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .                 .|+.      ...+|+|++|++++|+++ |..||.
T Consensus       161 ~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~  213 (316)
T cd05108         161 ADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD  213 (316)
T ss_pred             CCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCC
Confidence            1                 1111      123489999999999876 999985

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.95  E-value=1.3e-26  Score=232.95  Aligned_cols=180  Identities=35%  Similarity=0.657  Sum_probs=157.7

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||++.+..+++.|++|.+.+...........+..|+.+++.++||||+++++.+.....+++|||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME   81 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence            68999999999999999999999999999999976644444556778899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc--------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT--------  458 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~--------  458 (489)
                      |++|++|.+++...  ..+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||+++..        
T Consensus        82 ~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~  159 (305)
T cd05609          82 YVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNL  159 (305)
T ss_pred             cCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccc
Confidence            99999999999775  34899999999999999999999999999999999999999999999999987531        


Q ss_pred             ----------------------CCCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          459 ----------------------SCKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ----------------------~~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                            ..+|+.      ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~  217 (305)
T cd05609         160 YEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFF  217 (305)
T ss_pred             cccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                                  011221      123588999999999999999985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.95  E-value=1.1e-26  Score=233.64  Aligned_cols=184  Identities=22%  Similarity=0.340  Sum_probs=153.5

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcE--EEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGEL--YAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTST  379 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~--vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  379 (489)
                      +..++|++.+.||+|+||.||+|.++.++..  +|+|.+...  ........+..|+.++.++ +||||+++++++...+
T Consensus         4 ~~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~   81 (303)
T cd05088           4 LEWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   81 (303)
T ss_pred             cchhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEeccc--CCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC
Confidence            3456899999999999999999999877764  466665432  2344556788899999999 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC
Q 042772          380 HICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g  445 (489)
                      .+|+||||+++++|.+++....              ...+++..+..++.|++.||.|||++|++||||||+|||++.++
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~  161 (303)
T cd05088          82 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  161 (303)
T ss_pred             CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCC
Confidence            9999999999999999997542              12478999999999999999999999999999999999999999


Q ss_pred             cEEEEecCCccccC--------------CCCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          446 HVVLTDFDLSFMTS--------------CKPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       446 ~vKL~DFGlS~~~~--------------~~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .+||+|||++....              .+|+      ....+|+|++|++++++++ |..||.
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  225 (303)
T cd05088         162 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC  225 (303)
T ss_pred             cEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcc
Confidence            99999999985221              1111      1235699999999999997 999884

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.95  E-value=1.9e-26  Score=225.41  Aligned_cols=183  Identities=21%  Similarity=0.335  Sum_probs=158.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||+|....+|+.||+|.++.....+....+.+.+|+++++.++|+||+++++++......+++|
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            47999999999999999999999999999999987654445555678889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          386 DFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      ||+++++|.+++...  ....+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++.....   
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~  161 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCc
Confidence            999999999998652  234478999999999999999999999999999999999999999999999998753221   


Q ss_pred             ------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+.      ...+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  207 (267)
T cd08224         162 AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFY  207 (267)
T ss_pred             ccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcc
Confidence                        1221      124599999999999999999983

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>PHA02988 hypothetical protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=231.61  Aligned_cols=173  Identities=15%  Similarity=0.170  Sum_probs=148.7

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe----CCeEEEEEec
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT----STHICLITDF  387 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----~~~~~lVmEy  387 (489)
                      ..||+|++|.||+|.+  +|+.||+|.+.+.........+.+.+|+.++++++||||+++++++.+    ...+++||||
T Consensus        26 ~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         26 VLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             eEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            6789999999999998  488999999976544444446778899999999999999999999876    3578999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      +++|+|.+++...  ..+++.....++.|++.||.|||+ .+++||||||+|||+++++.+||+|||++.....      
T Consensus       104 ~~~g~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~~  181 (283)
T PHA02988        104 CTRGYLREVLDKE--KDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNV  181 (283)
T ss_pred             CCCCcHHHHHhhC--CCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhcccccccc
Confidence            9999999999875  348899999999999999999998 4999999999999999999999999999864221      


Q ss_pred             ------CCc--------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------KPQ--------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------~~~--------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            +|+        ....+|+|++|++++|+++|..||.
T Consensus       182 ~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~  223 (283)
T PHA02988        182 NFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFE  223 (283)
T ss_pred             CcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCC
Confidence                  122        2235699999999999999999995

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.95  E-value=1.5e-26  Score=226.95  Aligned_cols=182  Identities=23%  Similarity=0.291  Sum_probs=157.4

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +...+|.+.+.||+|+||.||+|.++.+++.||+|.+...    ......+.+|+.+++.++||||+++++++..+..++
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   78 (263)
T cd05052           3 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY   78 (263)
T ss_pred             CchHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC----chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcE
Confidence            3445789999999999999999999999999999998643    223567888999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      ++|||+++++|.+++.......+++..+..++.|++.||.|||++|++||||||+||++++++.+||+|||++.....  
T Consensus        79 lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~  158 (263)
T cd05052          79 IITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT  158 (263)
T ss_pred             EEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccccce
Confidence            999999999999999776555689999999999999999999999999999999999999999999999999864321  


Q ss_pred             --------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 --------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 --------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                    .|+.      ...+|+|++|++++++++ |..||.
T Consensus       159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~  207 (263)
T cd05052         159 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP  207 (263)
T ss_pred             eeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCC
Confidence                          1221      124599999999999997 888874

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.1e-26  Score=224.81  Aligned_cols=181  Identities=25%  Similarity=0.333  Sum_probs=156.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc--chHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML--NRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ++|.+.+.||+|++|.||.|....+++.+|+|.+......  .......+.+|+.++++++||||+++++++.....+++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4689999999999999999999999999999998754322  22345678889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC----
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS----  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~----  459 (489)
                      +|||+++++|.+++...  ..+++..+..++.|++.||.|||+.|++|+||+|+||++++++.++|+|||++....    
T Consensus        82 v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~  159 (263)
T cd06625          82 FMEYMPGGSVKDQLKAY--GALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICS  159 (263)
T ss_pred             EEEECCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecccccc
Confidence            99999999999999875  348899999999999999999999999999999999999999999999999985321    


Q ss_pred             --------------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 --------------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    .+|+.      ...+|+|++|.+++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~  208 (263)
T cd06625         160 SGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWA  208 (263)
T ss_pred             ccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCcc
Confidence                          11221      134599999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.95  E-value=1.3e-26  Score=226.55  Aligned_cols=182  Identities=24%  Similarity=0.357  Sum_probs=155.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++++.||+|+||.||+|.... +..||+|.+....    ...+.+..|+.+++.++||||+++++++......
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~-~~~v~iK~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   76 (261)
T cd05072           2 EIPRESIKLVKKLGAGQFGEVWMGYYNN-STKVAVKTLKPGT----MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPI   76 (261)
T ss_pred             cCchHHeEEeeecCCcCCceEEEEEecC-CceEEEEEccCCc----hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCc
Confidence            3556789999999999999999999764 6679999876432    2346788899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      +++|||+++++|.+++.......+++..+..++.|++.||.|||+.+++|+||||+||+++.++.++|+|||++..... 
T Consensus        77 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~  156 (261)
T cd05072          77 YIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDN  156 (261)
T ss_pred             EEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCC
Confidence            9999999999999999876555688999999999999999999999999999999999999999999999999864321 


Q ss_pred             ---------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 ---------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ---------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                     +|+.      ....|+|++|++++++++ |..||.
T Consensus       157 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~  206 (261)
T cd05072         157 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYP  206 (261)
T ss_pred             ceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCC
Confidence                           1111      123599999999999997 999984

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.94  E-value=6.7e-28  Score=244.97  Aligned_cols=186  Identities=32%  Similarity=0.547  Sum_probs=163.3

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..+.|+.-++||+|+||.||-++.+.||+.||+|.+.+.....+.......+|..||+++..|+||.+-.+|++.+.+
T Consensus       181 pvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~L  260 (591)
T KOG0986|consen  181 PVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDAL  260 (591)
T ss_pred             hccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCce
Confidence            34556799999999999999999999999999999999988777777788889999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      |+||..|.||+|.-+|.+.....+++..+++++++|+.||++||+.+||+|||||+|||+|+.|+|.|+|+|+|...+..
T Consensus       261 ClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g  340 (591)
T KOG0986|consen  261 CLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEG  340 (591)
T ss_pred             EEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCC
Confidence            99999999999999888877667999999999999999999999999999999999999999999999999999755422


Q ss_pred             --------------Cc------eeecccccchHHHHHHHHhCCccc
Q 042772          462 --------------PQ------VFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       462 --------------~~------~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                                    |+      +-..+|-|++|+++|||+-|..||
T Consensus       341 ~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPF  386 (591)
T KOG0986|consen  341 KPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPF  386 (591)
T ss_pred             CccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCch
Confidence                          11      123335566777777777777776

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.94  E-value=1.1e-26  Score=232.72  Aligned_cols=180  Identities=23%  Similarity=0.336  Sum_probs=154.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++.+.||.|+||.||+|.+..+++.||+|.+.....  ......+..|+.+++.++||||+++++++......++|
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv   82 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHE--EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   82 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccc--cCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEE
Confidence            4679999999999999999999999999999999865432  22234566799999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||++ ++|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++....     
T Consensus        83 ~e~~~-~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~  160 (301)
T cd07873          83 FEYLD-KDLKQYLDDCG-NSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT  160 (301)
T ss_pred             Eeccc-cCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCc
Confidence            99996 69999887653 347899999999999999999999999999999999999999999999999885322     


Q ss_pred             ----------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+.       ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~  206 (301)
T cd07873         161 YSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFP  206 (301)
T ss_pred             ccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCC
Confidence                      11221       123589999999999999999984

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.94  E-value=1.8e-26  Score=224.40  Aligned_cols=174  Identities=20%  Similarity=0.340  Sum_probs=148.6

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      +.||+|+||.||+|.++.+++.+|+|.+....  .......+.+|+++++.++||||+++++++......++||||++++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   78 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETL--PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGG   78 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCC
Confidence            46899999999999999999999999876432  3344567889999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------------
Q 042772          392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------------  459 (489)
Q Consensus       392 sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------------  459 (489)
                      +|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++....            
T Consensus        79 ~L~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  157 (252)
T cd05084          79 DFLTFLRTEG-PRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQ  157 (252)
T ss_pred             cHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCC
Confidence            9999997643 347899999999999999999999999999999999999999999999999976321            


Q ss_pred             -----CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 -----CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 -----~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                           .+|+.      ...+|+|++|++++++++ |..||.
T Consensus       158 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~  198 (252)
T cd05084         158 IPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYA  198 (252)
T ss_pred             CceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcc
Confidence                 11221      123489999999999986 888874

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.94  E-value=1.2e-26  Score=250.14  Aligned_cols=184  Identities=26%  Similarity=0.342  Sum_probs=155.8

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC----
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST----  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----  379 (489)
                      ..++|++.+.||+|+||+||+|.+..+++.||+|.+..... .......+..|+.++..++|+||++++..+....    
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~-~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGM-SEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccC-CHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            34689999999999999999999999999999999976543 3445667888999999999999999988775432    


Q ss_pred             ----eEEEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecC
Q 042772          380 ----HICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFD  453 (489)
Q Consensus       380 ----~~~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFG  453 (489)
                          .+++||||+++|+|.+++...  ....+++..+..++.|++.||.|||+++|+||||||+|||++.++.+||+|||
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFG  188 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFG  188 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEecc
Confidence                378999999999999999753  23458999999999999999999999999999999999999999999999999


Q ss_pred             CccccCC-----------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          454 LSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       454 lS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +++....                 +|+      ....+|+|++|++++++++|..||.
T Consensus       189 ls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~  246 (496)
T PTZ00283        189 FSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFD  246 (496)
T ss_pred             cCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence            9864321                 111      1134589999999999999999985

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.94  E-value=8.3e-27  Score=238.38  Aligned_cols=178  Identities=22%  Similarity=0.395  Sum_probs=151.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------C
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------T  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------~  379 (489)
                      ++|++++.||.|+||.||+|.+..+++.||+|.+.+... .......+.+|+.+++.++||||+++++++...      .
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07878          15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQ-SLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFN   93 (343)
T ss_pred             hhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhh-hhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccC
Confidence            579999999999999999999999999999999875432 223445677899999999999999999987543      3


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..|++|+++ +++|.+++..   ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++...
T Consensus        94 ~~~~~~~~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~  169 (343)
T cd07878          94 EVYLVTNLM-GADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQAD  169 (343)
T ss_pred             cEEEEeecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecC
Confidence            579999988 7899988864   348999999999999999999999999999999999999999999999999986432


Q ss_pred             ------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .+|+.       ...+|+|++|++++++++|..||.
T Consensus       170 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  217 (343)
T cd07878         170 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFP  217 (343)
T ss_pred             CCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCC
Confidence                        12222       234699999999999999999984

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.94  E-value=1.9e-26  Score=226.35  Aligned_cols=181  Identities=23%  Similarity=0.281  Sum_probs=154.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCC---CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGA---GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~t---g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .++|++.+.||+|+||.||+|.++.+   ...||+|.++...  .......+..|+.+++.++||||+++++++......
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS--SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV   80 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC--ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence            35799999999999999999998644   4589999886542  334456788899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      +++|||+++++|.+++..... .+++..+..++.|++.||.|||+++|+|+||||+||++++++.++|+|||++....  
T Consensus        81 ~iv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~  159 (266)
T cd05033          81 MIITEYMENGSLDKFLRENDG-KFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDS  159 (266)
T ss_pred             EEEEEcCCCCCHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhccccc
Confidence            999999999999999977543 58999999999999999999999999999999999999999999999999986542  


Q ss_pred             ---------------CCCcee------ecccccchHHHHHHHHh-CCcccC
Q 042772          460 ---------------CKPQVF------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ---------------~~~~~~------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                     .+|+..      ...|+|++|++++++++ |..||.
T Consensus       160 ~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~  210 (266)
T cd05033         160 EATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYW  210 (266)
T ss_pred             ccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCC
Confidence                           112211      24589999999999886 999984

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.94  E-value=1.2e-26  Score=230.12  Aligned_cols=180  Identities=26%  Similarity=0.388  Sum_probs=147.8

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC---CCCCcceeeEEEEe-----C
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFLPTLYASFQT-----S  378 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~~-----~  378 (489)
                      +|++.+.||+|+||.||+|.++.+++.||+|.+...... ......+..|+.+++.+   +||||+++++++..     .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~   79 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNE-DGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRE   79 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCC-CCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCC
Confidence            488999999999999999999999999999998754322 11223345577766654   79999999998864     3


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..++++|||++ ++|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++...
T Consensus        80 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~  158 (288)
T cd07863          80 TKVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIY  158 (288)
T ss_pred             ceEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccc
Confidence            46899999996 59999988765555899999999999999999999999999999999999999999999999998643


Q ss_pred             CC--------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC--------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~--------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..              +|+      ....+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~  208 (288)
T cd07863         159 SCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFC  208 (288)
T ss_pred             cCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcC
Confidence            21              122      1234599999999999999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.94  E-value=2.7e-26  Score=227.50  Aligned_cols=174  Identities=28%  Similarity=0.378  Sum_probs=151.2

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++++.||+|+||.||+|.+..+++.||+|.+....  .......+..|+.++++++||||+++++++......++|||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   79 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI--TVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTE   79 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC--ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEe
Confidence            6889999999999999999999999999999986542  23345678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      |+++++|..+.      .+++..+..++.|++.||.|||+.||+|+||||+|||++.++.++|+|||++....       
T Consensus        80 ~~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~  153 (279)
T cd06619          80 FMDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTY  153 (279)
T ss_pred             cCCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCC
Confidence            99999996542      26788999999999999999999999999999999999999999999999985321       


Q ss_pred             ------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            .+|+.      ...+|+|++|++++++++|..||.
T Consensus       154 ~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~  194 (279)
T cd06619         154 VGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYP  194 (279)
T ss_pred             CCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCch
Confidence                  12222      134599999999999999999984

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.94  E-value=6.7e-27  Score=227.42  Aligned_cols=178  Identities=31%  Similarity=0.530  Sum_probs=153.0

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |++++.||+|+||+||++....+++.||+|.+....... ........|+.+++.++||||+++++++......+++|||
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~-~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~   79 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEE-EEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEY   79 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHH-HHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccc-cccchhhhhhhccccccccccccccccccccccccccccc
Confidence            678899999999999999999999999999998764322 2223345599999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--------  459 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--------  459 (489)
                      +++++|.+++...  ..+++..+..++.|++.||.+||++|++|+||||+||++++++.++|+|||.+....        
T Consensus        80 ~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~  157 (260)
T PF00069_consen   80 CPGGSLQDYLQKN--KPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNP  157 (260)
T ss_dssp             ETTEBHHHHHHHH--SSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSS
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999843  448999999999999999999999999999999999999999999999999985311        


Q ss_pred             -------CCC-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          460 -------CKP-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -------~~~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             .+|       ......|+|++|++++++++|..||.
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~  200 (260)
T PF00069_consen  158 FVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFE  200 (260)
T ss_dssp             SSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSST
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc
Confidence                   112       22234488999999999999999985

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.94  E-value=1.8e-26  Score=228.87  Aligned_cols=183  Identities=21%  Similarity=0.322  Sum_probs=153.5

Q ss_pred             cccCcccccccCCCCceEEEEEEEc----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      .+.+|++.+.||+|+||.||+|...    .++..+|+|.+...  ........+.+|+.+++.++||||+++++++....
T Consensus         3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   80 (283)
T cd05090           3 PLSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDI--NNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ   80 (283)
T ss_pred             ChhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCC--CCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCC
Confidence            4567999999999999999999863    35678999998643  23445567888999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCC---------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC
Q 042772          380 HICLITDFCPGGELFALLDKQP---------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD  444 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~---------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~  444 (489)
                      ..|++|||+++++|.+++....               ...+++..+..++.|++.||.|||++|++||||||+||+++.+
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~  160 (283)
T cd05090          81 PVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQ  160 (283)
T ss_pred             ceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCC
Confidence            9999999999999999985431               1247888999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCccccC-----------------CCCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          445 GHVVLTDFDLSFMTS-----------------CKPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       445 g~vKL~DFGlS~~~~-----------------~~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +.+||+|||+++...                 .+|+      ....+|+|++|++++++++ |..||.
T Consensus       161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~  228 (283)
T cd05090         161 LHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYY  228 (283)
T ss_pred             CcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCC
Confidence            999999999986431                 1111      1234699999999999997 988873

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.94  E-value=1.3e-26  Score=226.31  Aligned_cols=180  Identities=25%  Similarity=0.307  Sum_probs=156.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..+|++.+.||.|+||.||+|.+.. +..+|+|.+....   ......+..|+.+++.++||||+++++++......++|
T Consensus         5 ~~~y~~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDD---LLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYII   80 (261)
T ss_pred             HHHHHHhhhhccCCCccEEEeEecC-CCcEEEEeccccc---hhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEE
Confidence            3579999999999999999999988 8899999987542   22345678899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+++++|.+++.......+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++.....    
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~  160 (261)
T cd05148          81 TELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYL  160 (261)
T ss_pred             EeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCcccc
Confidence            9999999999999876556689999999999999999999999999999999999999999999999999864321    


Q ss_pred             -----------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 -----------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -----------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                 +|+.      ...+|+|++|++++++++ |..||.
T Consensus       161 ~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~  206 (261)
T cd05148         161 SSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYP  206 (261)
T ss_pred             ccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence                       1111      124599999999999997 899985

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.94  E-value=2.2e-26  Score=227.63  Aligned_cols=183  Identities=23%  Similarity=0.350  Sum_probs=154.4

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCC-----cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAG-----ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg-----~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      ...+|++.+.||+|+||.||+|.....+     ..||+|.+....  .......+.+|+.+++.++||||+++++++...
T Consensus         3 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~--~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~   80 (283)
T cd05048           3 PLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA--EPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKE   80 (283)
T ss_pred             ChHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC--CHHHHHHHHHHHHHHHhcCCcccceEEEEEcCC
Confidence            4567999999999999999999987655     689999886442  334456788999999999999999999999988


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC
Q 042772          379 THICLITDFCPGGELFALLDKQPM--------------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD  444 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~--------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~  444 (489)
                      ...|++|||+++++|.+++.....              ..+++..+..++.|++.||.|||++|++|+||||+||+++++
T Consensus        81 ~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~  160 (283)
T cd05048          81 QPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEG  160 (283)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCC
Confidence            899999999999999999976421              347889999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCccccC-----------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          445 GHVVLTDFDLSFMTS-----------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       445 g~vKL~DFGlS~~~~-----------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +.++|+|||++....                 .+|+.      ...+|+|++|++++|+++ |..||.
T Consensus       161 ~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~  228 (283)
T cd05048         161 LTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYY  228 (283)
T ss_pred             CcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCC
Confidence            999999999986421                 11221      123589999999999986 998874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.94  E-value=1.8e-26  Score=226.32  Aligned_cols=179  Identities=25%  Similarity=0.352  Sum_probs=155.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.++...   ......+.+|+.+++.++||||+++++++.....+|++
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv   84 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP---GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWIC   84 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCc---hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEE
Confidence            357999999999999999999999999999999986542   23345677899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||+++++|.+++...  +.+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++....     
T Consensus        85 ~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~  162 (267)
T cd06645          85 MEFCGGGSLQDIYHVT--GPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAK  162 (267)
T ss_pred             EeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCcccc
Confidence            9999999999999765  348999999999999999999999999999999999999999999999999875321     


Q ss_pred             ----------CCCce---------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQV---------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~---------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+.         ...+|+|++|++++++++|..||.
T Consensus       163 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~  210 (267)
T cd06645         163 RKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMF  210 (267)
T ss_pred             cccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcc
Confidence                      11222         124699999999999999999873

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.94  E-value=3.2e-26  Score=228.31  Aligned_cols=179  Identities=27%  Similarity=0.439  Sum_probs=156.7

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +.|++++.||.|+||.||+|.+..+++.+++|.+...   .......+..|+.+++.++||||+++++++..+...|+||
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   88 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK---SEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMI   88 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEE
Confidence            5699999999999999999999999999999998654   3455677888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++++|..++.+.. ..+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||++....      
T Consensus        89 e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~  167 (292)
T cd06644          89 EFCPGGAVDAIMLELD-RGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRR  167 (292)
T ss_pred             ecCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceecccccccc
Confidence            9999999998876543 348999999999999999999999999999999999999999999999999875321      


Q ss_pred             ---------CCCcee-----------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQVF-----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~~-----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+..           ..+|+|++|++++++++|..||.
T Consensus       168 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~  216 (292)
T cd06644         168 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHH  216 (292)
T ss_pred             ceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCc
Confidence                     123322           13699999999999999999974

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.94  E-value=1.3e-26  Score=238.15  Aligned_cols=179  Identities=22%  Similarity=0.367  Sum_probs=150.8

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----  378 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----  378 (489)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+..... .......+.+|+.+++.++||||+++++++...     
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCccc-ChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            35789999999999999999999999999999999865432 334456777899999999999999999988643     


Q ss_pred             -CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          379 -THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       379 -~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                       ...|+||||++ ++|.+.+..    .+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        94 ~~~~~lv~e~~~-~~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~  168 (355)
T cd07874          94 FQDVYLVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_pred             cceeEEEhhhhc-ccHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCccccc
Confidence             35799999995 578777754    278899999999999999999999999999999999999999999999999864


Q ss_pred             cCC--------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC--------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~--------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              +|+.      ...+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~  219 (355)
T cd07874         169 AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP  219 (355)
T ss_pred             CCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            321              1211      234599999999999999999984

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.94  E-value=2.8e-26  Score=233.13  Aligned_cols=178  Identities=20%  Similarity=0.315  Sum_probs=151.8

Q ss_pred             cccccCCC--CceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          310 PIKPLGCG--DTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       310 ~~~~LG~G--~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      +++.||+|  +|++||++..+.+|+.||+|.++.... .......+.+|+.+++.++||||++++++|..++..|+||||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEAC-TNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF   80 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhc-cHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEec
Confidence            56789999  789999999999999999999975532 233456677899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--------  459 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--------  459 (489)
                      +++|+|.+++.......+++..+..++.|++.||.|||++||+||||||+|||++.++.++++||+.+....        
T Consensus        81 ~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~  160 (327)
T cd08227          81 MAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRV  160 (327)
T ss_pred             cCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccccccccc
Confidence            999999999976544558999999999999999999999999999999999999999999999997532110        


Q ss_pred             --------------CCCce--------eecccccchHHHHHHHHhCCcccC
Q 042772          460 --------------CKPQV--------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------------~~~~~--------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    .+|+.        ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  211 (327)
T cd08227         161 VHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFK  211 (327)
T ss_pred             cccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                          11222        234699999999999999999984

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.94  E-value=3.1e-26  Score=225.24  Aligned_cols=181  Identities=24%  Similarity=0.326  Sum_probs=152.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCC---cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAG---ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg---~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ..+|++.+.||+|+||.||+|.++.++   ..+|+|.++...  .......+..|+.+++.++||||+++++++......
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGY--TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPV   80 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            457999999999999999999986444   479999886542  233456788899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+||||+++++|.+++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.++.++|+|||++..... 
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd05066          81 MIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  159 (267)
T ss_pred             EEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccccc
Confidence            99999999999999998754 3478999999999999999999999999999999999999999999999998864321 


Q ss_pred             -----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 -----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                       .|+.      ....|+|++|++++++++ |..||.
T Consensus       160 ~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~  211 (267)
T cd05066         160 PEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW  211 (267)
T ss_pred             cceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcc
Confidence                             1111      123588999999999775 999884

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=2.2e-26  Score=228.30  Aligned_cols=180  Identities=26%  Similarity=0.382  Sum_probs=155.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++++.||+|+||.||+|.+..+++.||+|.+...  ........+.+|+.+++.++||||+++++++...+..++|||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~--~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLE--LDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCME   79 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecc--cCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEe
Confidence            689999999999999999999999999999988643  233445778899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          387 FCPGGELFALLDKQP-MKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~-~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |+++++|.+++.... ...+++..+..++.|++.||.|||+ .+++|+||||+||+++.++.+||+|||++....     
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  159 (286)
T cd06622          80 YMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAK  159 (286)
T ss_pred             ecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCccc
Confidence            999999999987631 2358999999999999999999996 599999999999999999999999999885321     


Q ss_pred             --------CCCce------------eecccccchHHHHHHHHhCCcccC
Q 042772          460 --------CKPQV------------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~~~~~------------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .+|+.            ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  208 (286)
T cd06622         160 TNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYP  208 (286)
T ss_pred             cCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCC
Confidence                    12322            234699999999999999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.94  E-value=1.9e-26  Score=229.39  Aligned_cols=180  Identities=25%  Similarity=0.350  Sum_probs=153.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++.+.||+|++|.||+|..+.+++.||+|.+.....  ......+.+|+++++.++||||+++++++......++|
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHE--EGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLV   81 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccc--cCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEE
Confidence            4679999999999999999999998999999999875432  11223456799999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||++ ++|.+++..... .+++..+..++.|++.||.|||+++++||||||+||+++.++.+||+|||+++...     
T Consensus        82 ~e~~~-~~L~~~~~~~~~-~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~  159 (291)
T cd07844          82 FEYLD-TDLKQYMDDCGG-GLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKT  159 (291)
T ss_pred             EecCC-CCHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCCCcc
Confidence            99997 599999876543 58999999999999999999999999999999999999999999999999875321     


Q ss_pred             ----------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+.       ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~  205 (291)
T cd07844         160 YSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFP  205 (291)
T ss_pred             ccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                      11221       123589999999999999999984

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.94  E-value=3.1e-26  Score=226.64  Aligned_cols=175  Identities=31%  Similarity=0.522  Sum_probs=152.5

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCH
Q 042772          314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL  393 (489)
Q Consensus       314 LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL  393 (489)
                      ||+|+||+||+|.+..+|+.||+|.+.+...........+..|+.+++.++||||+++++++......|+||||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999999999999999999765444444556677899999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--------------
Q 042772          394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--------------  459 (489)
Q Consensus       394 ~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--------------  459 (489)
                      .+++.......+++..+..++.|++.||.|||+.|++|+||+|+||++++++.++|+|||++....              
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y  160 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGY  160 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccccCCCCc
Confidence            999987654568999999999999999999999999999999999999999999999999885332              


Q ss_pred             CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .+|+.      ...+|+|++|++++++++|..||.
T Consensus       161 ~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  195 (277)
T cd05577         161 MAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFR  195 (277)
T ss_pred             CCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCC
Confidence            11221      234699999999999999999984

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=3e-26  Score=226.67  Aligned_cols=179  Identities=26%  Similarity=0.397  Sum_probs=156.7

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||.|+||.||+|.+..++..+|+|.+...   .......+..|+.+++.++||||+++++.+......|+||
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIE---SEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILI   81 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeC---CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEe
Confidence            5699999999999999999999989999999998643   3445567888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++++|.+++.... ..+++..+..++.|++.||.|||++||+|+||||+||+++.++.++|+|||++....      
T Consensus        82 e~~~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~  160 (280)
T cd06611          82 EFCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKR  160 (280)
T ss_pred             eccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhccccccc
Confidence            9999999999987643 358999999999999999999999999999999999999999999999999875321      


Q ss_pred             ---------CCCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.           ...+|+|++|.+++++++|..||.
T Consensus       161 ~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~  209 (280)
T cd06611         161 DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHH  209 (280)
T ss_pred             ceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcc
Confidence                     11221           124699999999999999999984

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.94  E-value=1.6e-26  Score=245.47  Aligned_cols=176  Identities=21%  Similarity=0.269  Sum_probs=144.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------  378 (489)
                      ..+|++.+.||+|+||.||+|.+..+++.||+|.+....       ....+|+.+++.++||||++++++|...      
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~-------~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~  137 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP-------QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNE  137 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc-------chHHHHHHHHHhcCCCCCcceeeeEeecccccCC
Confidence            457999999999999999999999999999999885431       1234699999999999999999877432      


Q ss_pred             --CeEEEEEecCCCCCHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-cEEEEecC
Q 042772          379 --THICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFD  453 (489)
Q Consensus       379 --~~~~lVmEy~~ggsL~~~L~~--~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-~vKL~DFG  453 (489)
                        ..+++||||++ ++|.+++..  .....+++..++.++.||+.||.|||++||+||||||+|||++.++ .+||+|||
T Consensus       138 ~~~~l~lvmE~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFG  216 (440)
T PTZ00036        138 KNIFLNVVMEFIP-QTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFG  216 (440)
T ss_pred             CceEEEEEEecCC-ccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccc
Confidence              25789999996 578777753  2234589999999999999999999999999999999999998665 69999999


Q ss_pred             CccccCC--------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          454 LSFMTSC--------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       454 lS~~~~~--------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +|+....              +|+.       ....|+|++|++++++++|..||.
T Consensus       217 la~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~  272 (440)
T PTZ00036        217 SAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFS  272 (440)
T ss_pred             cchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            9964321              1222       223589999999999999999984

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.94  E-value=3.2e-26  Score=223.44  Aligned_cols=178  Identities=27%  Similarity=0.401  Sum_probs=151.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..+|++.+.||+|+||.||++.++. +..+|+|.+.....    ....+..|+.+++.++||||+++++++......+++
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~-~~~~a~K~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   77 (256)
T cd05114           3 PSELTFMKELGSGQFGVVHLGKWRA-QIKVAIKAINEGAM----SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIV   77 (256)
T ss_pred             HHHcEEeeEecCCcCceEEEEEecc-CceEEEEecccCCc----cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEE
Confidence            4579999999999999999998865 56799998764422    234677899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||+++|+|.+++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||+++...     
T Consensus        78 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~  156 (256)
T cd05114          78 TEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYT  156 (256)
T ss_pred             EEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCcee
Confidence            99999999999997643 347899999999999999999999999999999999999999999999999886321     


Q ss_pred             -----------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 -----------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 -----------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                 .+|+.      ...+|+|++|++++++++ |..||.
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~  203 (256)
T cd05114         157 SSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFE  203 (256)
T ss_pred             ccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCC
Confidence                       11221      124589999999999998 898885

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.94  E-value=3.1e-26  Score=240.57  Aligned_cols=186  Identities=22%  Similarity=0.268  Sum_probs=153.3

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCC-----CcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEE
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGA-----GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYAS  374 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~t-----g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~  374 (489)
                      ..+..++|++.+.||+|+||.||+|.+...     +..||+|.+....  .....+.+.+|+.+++++. ||||++++++
T Consensus        32 ~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~--~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~  109 (400)
T cd05105          32 WEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTA--RSSEKQALMSELKIMTHLGPHLNIVNLLGA  109 (400)
T ss_pred             eeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCC--ChHHHHHHHHHHHHHHhcCCCCCeeeEEEE
Confidence            344567899999999999999999987543     3479999986542  2344567889999999996 9999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhhCC-----------------------------------------------------
Q 042772          375 FQTSTHICLITDFCPGGELFALLDKQP-----------------------------------------------------  401 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~~~-----------------------------------------------------  401 (489)
                      +.....+|+|||||++|+|.+++..+.                                                     
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (400)
T cd05105         110 CTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYV  189 (400)
T ss_pred             EccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccc
Confidence            999999999999999999999886531                                                     


Q ss_pred             -----------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEE
Q 042772          402 -----------------------------------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENIL  440 (489)
Q Consensus       402 -----------------------------------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NIL  440 (489)
                                                               ...+++..+..++.|++.||.|||+++|+||||||+|||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nil  269 (400)
T cd05105         190 PMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVL  269 (400)
T ss_pred             hhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEE
Confidence                                                     123678888999999999999999999999999999999


Q ss_pred             EecCCcEEEEecCCccccCC-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          441 LQKDGHVVLTDFDLSFMTSC-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       441 ld~~g~vKL~DFGlS~~~~~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ++.++.+||+|||+++....                 +|+.      ...+|+|++|++++++++ |..||.
T Consensus       270 l~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~  341 (400)
T cd05105         270 LAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYP  341 (400)
T ss_pred             EeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCc
Confidence            99999999999999864211                 1111      124589999999999985 888874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.94  E-value=2.4e-26  Score=237.30  Aligned_cols=179  Identities=22%  Similarity=0.367  Sum_probs=151.0

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----  378 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----  378 (489)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+.... ........+.+|+.+++.++||||+++++++...     
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~  100 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE  100 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccc-cCchhHHHHHHHHHHHHhcCCCCccccceeecccccccc
Confidence            3578999999999999999999999999999999987543 2334456778899999999999999999987543     


Q ss_pred             -CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          379 -THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       379 -~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                       ..+|+||||++ ++|.+.+..    .+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus       101 ~~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~  175 (364)
T cd07875         101 FQDVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  175 (364)
T ss_pred             cCeEEEEEeCCC-CCHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccc
Confidence             35899999995 588887754    278899999999999999999999999999999999999999999999999864


Q ss_pred             cCC--------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC--------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~--------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              +|+.      ...+|+|++|++++++++|..||.
T Consensus       176 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  226 (364)
T cd07875         176 AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP  226 (364)
T ss_pred             cCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCC
Confidence            321              1111      234699999999999999999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.94  E-value=2.3e-26  Score=227.45  Aligned_cols=180  Identities=23%  Similarity=0.331  Sum_probs=153.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++++.||+|++|.||+|.+..+++.||+|.+..... .......+..|+.+++.++||||+++++++..+...|+|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESE-EEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFE   79 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccc-cCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEe
Confidence            48889999999999999999999999999999865422 22234567789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          387 FCPGGELFALLDKQP-MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~-~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      |++ ++|.+++.... ...+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++....      
T Consensus        80 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  158 (285)
T cd07861          80 FLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVY  158 (285)
T ss_pred             cCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcccc
Confidence            996 69999887643 2558999999999999999999999999999999999999999999999999875321      


Q ss_pred             ---------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.       ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~  203 (285)
T cd07861         159 THEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFH  203 (285)
T ss_pred             cCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                     11222       223589999999999999998884

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.94  E-value=2.8e-27  Score=243.42  Aligned_cols=149  Identities=25%  Similarity=0.376  Sum_probs=133.7

Q ss_pred             cccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCC
Q 042772          310 PIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       310 ~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      ..+.||+|.||+||-|.++.+|+.||+|++++-... .+....+++|+.||+.+.||.||.+...|++...+++|||-+ 
T Consensus       568 ~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp-~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl-  645 (888)
T KOG4236|consen  568 ADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFP-TKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKL-  645 (888)
T ss_pred             hHhhccCCcceeeecceecccCceeeeeeeecccCC-CchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhh-
Confidence            458899999999999999999999999999886653 444578899999999999999999999999999999999999 


Q ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC---CcEEEEecCCccccCC
Q 042772          390 GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD---GHVVLTDFDLSFMTSC  460 (489)
Q Consensus       390 ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~---g~vKL~DFGlS~~~~~  460 (489)
                      +|+..+.+-....+.+++....+++.||+.||.|||-++|+|+||||+|||+.+.   -++||||||+|+.+..
T Consensus       646 ~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgE  719 (888)
T KOG4236|consen  646 HGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGE  719 (888)
T ss_pred             cchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecch
Confidence            6677777766666779999999999999999999999999999999999999754   4899999999997763

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.94  E-value=4.3e-26  Score=223.69  Aligned_cols=181  Identities=24%  Similarity=0.308  Sum_probs=153.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccc--cchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM--LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THI  381 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~  381 (489)
                      .+|++.+.||+|+||.||.|.+..+++.||+|.+.....  ........+.+|+.+++.++||||+++++++.+.  ..+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            468999999999999999999999999999998864321  1234567888899999999999999999988763  468


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      +++|||+++++|.+++...  ..+++..+..++.|++.||.|||+++++|+||||+||+++.++.++|+|||++....  
T Consensus        82 ~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~  159 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSY--GALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTI  159 (265)
T ss_pred             EEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccc
Confidence            8999999999999999865  347899999999999999999999999999999999999999999999999885321  


Q ss_pred             ----------------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                      .+|+.      ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~  210 (265)
T cd06652         160 CLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWA  210 (265)
T ss_pred             cccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCC
Confidence                            11221      134599999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.94  E-value=2.5e-26  Score=225.69  Aligned_cols=179  Identities=23%  Similarity=0.379  Sum_probs=153.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeC------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTS------  378 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~------  378 (489)
                      +.|++.+.||+|+||.||+|....+++.||+|.+....    .....+..|+.+++.+ +||||+++++++...      
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG----DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             hhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC----ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            46899999999999999999999999999999986542    2234677899999988 699999999998753      


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ...|++|||+++++|.+++.......+++..+..++.|++.||.|||+++|+|+||||+||++++++.++|+|||++...
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~  161 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  161 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceec
Confidence            46899999999999999998765556899999999999999999999999999999999999999999999999998632


Q ss_pred             C---------------CCCcee-----------ecccccchHHHHHHHHhCCcccC
Q 042772          459 S---------------CKPQVF-----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~---------------~~~~~~-----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .               .+|+..           ..+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~  217 (272)
T cd06637         162 DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLC  217 (272)
T ss_pred             ccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            1               112222           24799999999999999999984

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.94  E-value=6.2e-26  Score=224.82  Aligned_cols=177  Identities=27%  Similarity=0.410  Sum_probs=154.3

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |++.+.||+|+||.||+|.+..++..+++|.+...   .......+..|+.+++.++||||+++++++......++||||
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~   83 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTK---SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF   83 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCC---CHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEe
Confidence            78899999999999999999999999999998653   234566788899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--------  459 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--------  459 (489)
                      +++++|..++.... ..+++..+..++.|++.||.|||+.|++|+||||+||+++.++.+||+|||++....        
T Consensus        84 ~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~  162 (282)
T cd06643          84 CAGGAVDAVMLELE-RPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS  162 (282)
T ss_pred             cCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccccccccccccccc
Confidence            99999998876532 458999999999999999999999999999999999999999999999999885321        


Q ss_pred             -------CCCcee-----------ecccccchHHHHHHHHhCCcccC
Q 042772          460 -------CKPQVF-----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -------~~~~~~-----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             ..|+..           ..+|+|++|++++++++|..||.
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~  209 (282)
T cd06643         163 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHH  209 (282)
T ss_pred             ccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCcc
Confidence                   112221           25799999999999999999984

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=7.4e-26  Score=220.62  Aligned_cols=179  Identities=24%  Similarity=0.367  Sum_probs=156.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||.|+||.||+|....+++.+++|.+....   ....+.+..|+++++.++||||+++++++.....+|++|
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~   79 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEP---GDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVM   79 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCc---hhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEE
Confidence            47999999999999999999999999999999997542   235677888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++++|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||++++++.+||+|||++....      
T Consensus        80 e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~  158 (262)
T cd06613          80 EYCGGGSLQDIYQVTR-GPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKR  158 (262)
T ss_pred             eCCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhhhhcc
Confidence            9999999999987652 348999999999999999999999999999999999999999999999999875321      


Q ss_pred             ---------CCCcee---------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQVF---------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~~---------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+..         ..+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~  205 (262)
T cd06613         159 KSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMF  205 (262)
T ss_pred             ccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCC
Confidence                     112222         23589999999999999999984

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.94  E-value=5e-26  Score=223.76  Aligned_cols=181  Identities=23%  Similarity=0.330  Sum_probs=154.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCc---EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGE---LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~---~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ..+|++.+.||+|+||.||+|.++.++.   .||+|.+....  .......+..|+.+++.++||||+++++++......
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   80 (269)
T cd05065           3 VSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY--TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPV   80 (269)
T ss_pred             hHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCce
Confidence            4568999999999999999999887664   69999986542  344567788999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ++||||+++++|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++..... 
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~  159 (269)
T cd05065          81 MIITEFMENGALDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD  159 (269)
T ss_pred             EEEEecCCCCcHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccC
Confidence            99999999999999997653 3488999999999999999999999999999999999999999999999998854221 


Q ss_pred             -------------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 -------------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -------------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                         +|+.      ...+|+|++|++++|+++ |..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~  213 (269)
T cd05065         160 TSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW  213 (269)
T ss_pred             ccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCC
Confidence                               1111      124589999999999775 999884

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.94  E-value=3.2e-26  Score=234.56  Aligned_cols=184  Identities=23%  Similarity=0.319  Sum_probs=151.5

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQ  376 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  376 (489)
                      +..++|++.+.||+|+||.||+|...+     +++.||+|.+....  .....+.+..|+.++.++ +||||+++++++.
T Consensus         4 ~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~   81 (337)
T cd05054           4 FPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGA--TASEYKALMTELKILIHIGHHLNVVNLLGACT   81 (337)
T ss_pred             cCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCC--CHHHHHHHHHHHHHHHhhccCcchhheeeeEe
Confidence            344689999999999999999997543     45789999886432  234456778899999999 7999999999876


Q ss_pred             e-CCeEEEEEecCCCCCHHHHHhhCCC-----------------------------------------------------
Q 042772          377 T-STHICLITDFCPGGELFALLDKQPM-----------------------------------------------------  402 (489)
Q Consensus       377 ~-~~~~~lVmEy~~ggsL~~~L~~~~~-----------------------------------------------------  402 (489)
                      . ...++++|||+++++|.+++.....                                                     
T Consensus        82 ~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (337)
T cd05054          82 KPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEE  161 (337)
T ss_pred             cCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchh
Confidence            5 4578999999999999999865321                                                     


Q ss_pred             ------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----------------
Q 042772          403 ------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----------------  460 (489)
Q Consensus       403 ------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----------------  460 (489)
                            ..+++..+..++.||+.||.|||++||+||||||+||+++.++.++|+|||++.....                
T Consensus       162 ~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y  241 (337)
T cd05054         162 GDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKW  241 (337)
T ss_pred             hhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccc
Confidence                  2578899999999999999999999999999999999999999999999999875321                


Q ss_pred             -CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 -KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                       +|+      ....+|+|++|++++++++ |..||.
T Consensus       242 ~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~  277 (337)
T cd05054         242 MAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYP  277 (337)
T ss_pred             cCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCC
Confidence             111      1223599999999999997 999984

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=4.7e-26  Score=222.96  Aligned_cols=181  Identities=25%  Similarity=0.348  Sum_probs=155.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++.+.||+|++|.||+|.+.. ++.||+|.+.....    ..+.+.+|+.+++.++||||+++++++...+..+
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~-~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   77 (261)
T cd05068           3 IDRTSIQLLRKLGAGQFGEVWEGLWNN-TTPVAVKTLKPGTM----DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIY   77 (261)
T ss_pred             cchhheeeEEEecccCCccEEEEEecC-CeEEEEEeeCCCcc----cHHHHHHHHHHHHHCCCCCccceeEEEecCCCee
Confidence            445679999999999999999999765 57899999865422    2356778999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      ++|||+++++|.+++.......+++..+..++.|++.||.|||++|++|+||||+||++++++.+||+|||++....   
T Consensus        78 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~  157 (261)
T cd05068          78 IVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDI  157 (261)
T ss_pred             eeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCc
Confidence            99999999999999987654568999999999999999999999999999999999999999999999999886432   


Q ss_pred             -------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 -------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 -------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                   .+|+.      ...+|+|++|++++++++ |..||.
T Consensus       158 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~  206 (261)
T cd05068         158 YEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYP  206 (261)
T ss_pred             ccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCC
Confidence                         11222      124589999999999998 999884

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.94  E-value=5.9e-26  Score=224.43  Aligned_cols=180  Identities=23%  Similarity=0.320  Sum_probs=153.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|+..+.||+|+||.||+|.++.+++.||+|.+..... .....+.+..|+.+++.++||||+++++++......++||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   79 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESED-DPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVF   79 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeeccc-CccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEE
Confidence            368999999999999999999999999999999865421 1223345678999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK----  461 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~----  461 (489)
                      ||++++.|..++...  ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++......    
T Consensus        80 e~~~~~~l~~~~~~~--~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  157 (286)
T cd07847          80 EYCDHTVLNELEKNP--RGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDY  157 (286)
T ss_pred             eccCccHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCcccc
Confidence            999988887776553  34899999999999999999999999999999999999999999999999998643211    


Q ss_pred             -----------Cc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 -----------PQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -----------~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 |+       ....+|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~  202 (286)
T cd07847         158 TDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWP  202 (286)
T ss_pred             cCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCC
Confidence                       11       1134689999999999999999984

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=5.5e-26  Score=221.95  Aligned_cols=182  Identities=26%  Similarity=0.359  Sum_probs=156.6

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      +++.++|++.+.||+|+||.||+|.+.+ ++.+|+|.+.....    ..+.+..|+.+++.++||||+++++++......
T Consensus         2 ~~~~~~~~i~~~ig~g~~~~v~~~~~~~-~~~~~vK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   76 (261)
T cd05034           2 EIPRESLKLERKLGAGQFGEVWMGTWNG-TTKVAVKTLKPGTM----SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPI   76 (261)
T ss_pred             ccchhheeeeeeeccCcceEEEEEEEcC-CceEEEEEecCCcc----CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCce
Confidence            3566789999999999999999999764 57899999875432    235678899999999999999999999988899


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      +++|||+++++|.+++.......+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++..... 
T Consensus        77 ~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~  156 (261)
T cd05034          77 YIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDD  156 (261)
T ss_pred             EEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccch
Confidence            9999999999999999876555689999999999999999999999999999999999999999999999999864320 


Q ss_pred             ---------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ---------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ---------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                     .|+      ....+|+|++|++++++++ |..||.
T Consensus       157 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~  206 (261)
T cd05034         157 EYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYP  206 (261)
T ss_pred             hhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCC
Confidence                           111      1234689999999999998 999884

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.94  E-value=3.8e-26  Score=223.24  Aligned_cols=178  Identities=27%  Similarity=0.381  Sum_probs=151.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..+|++.+.||+|+||.||+|.++. +..+|+|.+.+....    ...+..|+.+++.++||||+++++++......|+|
T Consensus         3 ~~~~~~~~~lg~G~~~~v~~~~~~~-~~~~~iK~~~~~~~~----~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   77 (256)
T cd05059           3 PSELTFLKELGSGQFGVVHLGKWRG-KIDVAIKMIREGAMS----EDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIV   77 (256)
T ss_pred             hHHcchhhhhccCCCceEEEeEecC-CccEEEEEeccCCCC----HHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEE
Confidence            3569999999999999999998864 668999988654321    24567799999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+++++|.+++..... .+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||+++....    
T Consensus        78 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~  156 (256)
T cd05059          78 TEYMANGCLLNYLRERKG-KLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYT  156 (256)
T ss_pred             EecCCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceeccccccc
Confidence            999999999999976543 589999999999999999999999999999999999999999999999998863211    


Q ss_pred             ------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 ------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                  +|+.      ...+|+|++|++++++++ |..||.
T Consensus       157 ~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  203 (256)
T cd05059         157 SSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYE  203 (256)
T ss_pred             ccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCC
Confidence                        1111      124689999999999997 888874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.94  E-value=4.2e-26  Score=224.26  Aligned_cols=175  Identities=23%  Similarity=0.281  Sum_probs=142.7

Q ss_pred             cccCCCCceEEEEEEEcC--CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCC
Q 042772          312 KPLGCGDTGSVHLVELQG--AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      +.||+|+||.||+|....  ....+++|.+....  .......+.+|+.+++.++||||+++++.+......++||||++
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASA--TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCP   78 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccC--ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCC
Confidence            368999999999997543  34578888765432  23344567889999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhCCC---CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          390 GGELFALLDKQPM---KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       390 ggsL~~~L~~~~~---~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      +|+|.+++.....   ...++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....       
T Consensus        79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~  158 (269)
T cd05042          79 LGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYIT  158 (269)
T ss_pred             CCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheec
Confidence            9999999977432   234678888999999999999999999999999999999999999999999985321       


Q ss_pred             ----------CCCce-------------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 ----------CKPQV-------------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ----------~~~~~-------------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                .+|+.             ...+|+|++|++++++++ |..||.
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~  211 (269)
T cd05042         159 KDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYP  211 (269)
T ss_pred             cCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCC
Confidence                      11221             124589999999999988 788874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.94  E-value=3e-28  Score=231.25  Aligned_cols=181  Identities=28%  Similarity=0.403  Sum_probs=157.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .+.|.+.+.||+|.|+.||++.+..||+.+|+|+++......+ ..+.+.+|+.|.+.|+||||+++.+.+......|+|
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~-~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylv   88 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR-DFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   88 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccc-cHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEE
Confidence            4679999999999999999999999999999999987655443 678889999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC---CcEEEEecCCccccCC-
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD---GHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~---g~vKL~DFGlS~~~~~-  460 (489)
                      +|++.|++|..-+-.+  -.++|..+..++.||+.||.|+|.+||||||+||+|+|+.+.   --+||+|||+|..... 
T Consensus        89 Fe~m~G~dl~~eIV~R--~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g  166 (355)
T KOG0033|consen   89 FDLVTGGELFEDIVAR--EFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDG  166 (355)
T ss_pred             EecccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCCc
Confidence            9999999998666554  347999999999999999999999999999999999999533   3689999999975441 


Q ss_pred             --------CCc-----------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 --------KPQ-----------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------~~~-----------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .|.           +-.+.|+|+.|++++.++.|++||-
T Consensus       167 ~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~  213 (355)
T KOG0033|consen  167 EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFW  213 (355)
T ss_pred             cccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCC
Confidence                    122           2245589999999999999999983

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.94  E-value=4e-27  Score=244.18  Aligned_cols=173  Identities=28%  Similarity=0.456  Sum_probs=148.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ++.++....++-||+|+.|.||+|+..  ++.||||.++.-          -..++..|++|+||||+.|.++|....-+
T Consensus       120 eiPFe~IsELeWlGSGaQGAVF~Grl~--netVAVKKV~el----------kETdIKHLRkLkH~NII~FkGVCtqsPcy  187 (904)
T KOG4721|consen  120 EIPFEEISELEWLGSGAQGAVFLGRLH--NETVAVKKVREL----------KETDIKHLRKLKHPNIITFKGVCTQSPCY  187 (904)
T ss_pred             cCCHHHhhhhhhhccCcccceeeeecc--CceehhHHHhhh----------hhhhHHHHHhccCcceeeEeeeecCCcee
Confidence            344455566788999999999999987  688999976422          12367789999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      |||||||+.|.|...|+..  .++.......|..+|+.||.|||.+.|||||||.-||||..+..|||+|||.|+...  
T Consensus       188 CIiMEfCa~GqL~~VLka~--~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~  265 (904)
T KOG4721|consen  188 CIIMEFCAQGQLYEVLKAG--RPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDK  265 (904)
T ss_pred             EEeeeccccccHHHHHhcc--CccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhh
Confidence            9999999999999999875  458899999999999999999999999999999999999999999999999987543  


Q ss_pred             ------C------CCceee------cccccchHHHHHHHHhCCcccC
Q 042772          460 ------C------KPQVFY------HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------~------~~~~~~------~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            +      +|+++.      ..|+|+||+.++||++|.+||-
T Consensus       266 STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYk  312 (904)
T KOG4721|consen  266 STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYK  312 (904)
T ss_pred             hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCcc
Confidence                  2      223222      2389999999999999999994

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.94  E-value=9.3e-26  Score=221.22  Aligned_cols=180  Identities=25%  Similarity=0.288  Sum_probs=149.0

Q ss_pred             cccccccCCCCceEEEEEEEcC---CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe----
Q 042772          308 FKPIKPLGCGDTGSVHLVELQG---AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH----  380 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~---tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~----  380 (489)
                      |++.+.||+|+||.||+|....   ++..||+|.+..... .......+..|+.+++.++||||+++++.+.....    
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   79 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIH-TYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKI   79 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcC-CHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccC
Confidence            5788999999999999999764   347899999875432 33456778899999999999999999998765443    


Q ss_pred             --EEEEEecCCCCCHHHHHhhC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          381 --ICLITDFCPGGELFALLDKQ----PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       381 --~~lVmEy~~ggsL~~~L~~~----~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                        .+++|||+++|+|..++...    ....+++..+..++.|++.||.|||+++++||||||+||++++++.+||+|||+
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~  159 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGL  159 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccc
Confidence              79999999999999998543    223589999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          455 SFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       455 S~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ++....                 +|+      ....+|+|++|++++|+++ |..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~  217 (273)
T cd05035         160 SKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYP  217 (273)
T ss_pred             eeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence            864321                 111      1134699999999999998 888874

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.94  E-value=8.2e-26  Score=221.44  Aligned_cols=180  Identities=28%  Similarity=0.431  Sum_probs=154.7

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc------hHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN------RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~------~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      +|.+...||.|+||.||+|.+..+++.+|+|.+.......      ......+..|+.+++.++||||+++++++.....
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            4778899999999999999999889999999886543221      2234678889999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      .+++|||+++++|.+++...  ..+++..+..++.|++.||.|||++|++|+||+|+||++++++.++|+|||++.....
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~  158 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNY--GAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEA  158 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCccccc
Confidence            99999999999999999775  3488999999999999999999999999999999999999999999999998764431


Q ss_pred             ---------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                           +|+      ....+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  213 (267)
T cd06628         159 NSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFP  213 (267)
T ss_pred             ccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCC
Confidence                                 111      1134699999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.94  E-value=8.9e-26  Score=223.39  Aligned_cols=182  Identities=22%  Similarity=0.331  Sum_probs=151.9

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCc----EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGE----LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~----~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      +...+|++.+.||+|+||+||+|.+..+++    .||+|.+....  .......+..|..+++.+.||||+++++++...
T Consensus         4 l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~   81 (279)
T cd05109           4 LKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT--SPKANKEILDEAYVMAGVGSPYVCRLLGICLTS   81 (279)
T ss_pred             cchhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCC--CHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC
Confidence            345689999999999999999999877776    48999886432  334456788899999999999999999988754


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                       ..+++|||+++|+|.+++.... ..+++..+..++.|++.||.|||+++++||||||+|||++.++.+||+|||+++..
T Consensus        82 -~~~l~~~~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~  159 (279)
T cd05109          82 -TVQLVTQLMPYGCLLDYVRENK-DRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (279)
T ss_pred             -CcEEEEEcCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeec
Confidence             5789999999999999997643 34899999999999999999999999999999999999999999999999998643


Q ss_pred             CC-----------------CCcee------ecccccchHHHHHHHHh-CCcccC
Q 042772          459 SC-----------------KPQVF------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~-----------------~~~~~------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ..                 +|+..      ..+|+|++|++++|+++ |..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~  213 (279)
T cd05109         160 DIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYD  213 (279)
T ss_pred             ccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCC
Confidence            21                 12211      23489999999999887 888885

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=5.7e-26  Score=223.77  Aligned_cols=184  Identities=19%  Similarity=0.227  Sum_probs=153.7

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCC-----CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGA-----GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~t-----g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      +..++|++.+.||+|+||.||+|.++..     +..||+|.+....  .......+.+|+.+++.++||||+++++++..
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~   80 (277)
T cd05032           3 LPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA--SMRERIEFLNEASVMKEFNCHHVVRLLGVVST   80 (277)
T ss_pred             cchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc--CHHHHHHHHHHHHHHHhCCCCceeEEEEEEcC
Confidence            4567899999999999999999998754     3789999986442  23345667889999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEE
Q 042772          378 STHICLITDFCPGGELFALLDKQP--------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVL  449 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~--------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL  449 (489)
                      ....++||||+++|+|.+++....        ...+++..+..++.|++.||.|||+.+++||||||+||+++.++.+||
T Consensus        81 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl  160 (277)
T cd05032          81 GQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKI  160 (277)
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEE
Confidence            999999999999999999997532        123678889999999999999999999999999999999999999999


Q ss_pred             EecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          450 TDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       450 ~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +|||+++....                 +|+      ....+|+|++|++++++++ |..||.
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  223 (277)
T cd05032         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQ  223 (277)
T ss_pred             CCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCc
Confidence            99998753210                 111      1233589999999999997 888884

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.94  E-value=8e-26  Score=224.17  Aligned_cols=177  Identities=27%  Similarity=0.378  Sum_probs=148.8

Q ss_pred             Cc-ccccccCCCCceEEEEEEE----cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--C
Q 042772          307 HF-KPIKPLGCGDTGSVHLVEL----QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--T  379 (489)
Q Consensus       307 ~y-~~~~~LG~G~fG~Vy~a~~----~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~  379 (489)
                      +| ++++.||+|+||+||++..    ..++..||+|.+....  .......+.+|+++++.++||||+++++++...  .
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   81 (283)
T cd05080           4 RYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKREC--GQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGK   81 (283)
T ss_pred             hhceeceecccCCCcEEEEeeEccccCCCCceEEEEEecccc--ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCc
Confidence            45 8999999999999988753    3567899999986542  233456778899999999999999999987653  4


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .++++|||+++++|.+++...   .+++..+..++.|++.||.|||++|++||||||+|||+++++.+||+|||++....
T Consensus        82 ~~~lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  158 (283)
T cd05080          82 GLQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  158 (283)
T ss_pred             eEEEEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccC
Confidence            689999999999999999764   38999999999999999999999999999999999999999999999999986432


Q ss_pred             C------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                  +|+      ....+|+|++|++++++++|+.||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~  211 (283)
T cd05080         159 EGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQ  211 (283)
T ss_pred             CcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCC
Confidence            1                  111      1234599999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.94  E-value=5.8e-26  Score=224.07  Aligned_cols=182  Identities=21%  Similarity=0.272  Sum_probs=154.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ..+|.+.+.||+|+||.||+|....     +++.||+|.++...  .....+.+.+|+++++.++||||+++++++....
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETA--SNDARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccC--CHHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            4579999999999999999998753     36789999986542  2334578889999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcE
Q 042772          380 HICLITDFCPGGELFALLDKQP------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHV  447 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~v  447 (489)
                      ..+++|||+++++|.+++....            ...+++..+..++.|++.||.|||++|++||||||+||+++.++.+
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~  161 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVV  161 (280)
T ss_pred             CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeE
Confidence            9999999999999999997642            2347888999999999999999999999999999999999999999


Q ss_pred             EEEecCCccccC-----------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          448 VLTDFDLSFMTS-----------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       448 KL~DFGlS~~~~-----------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||+|||++....                 .+|+.      ...+|+|++|++++++++ |..||.
T Consensus       162 kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~  226 (280)
T cd05049         162 KIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWY  226 (280)
T ss_pred             EECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCC
Confidence            999999986321                 11221      123599999999999997 999873

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=9e-26  Score=220.05  Aligned_cols=179  Identities=23%  Similarity=0.372  Sum_probs=155.3

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ...+|++.+.||.|+||.||+|...  |+.||+|.+.....    ..+++..|+.+++.++||||+++++++......++
T Consensus         4 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   77 (256)
T cd05039           4 NSKELKLGATIGKGEFGDVMLGDYR--GQKVAVKCLKDDST----AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYI   77 (256)
T ss_pred             ChhhccceeeeecCCCceEEEEEec--CcEEEEEEeccchh----HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEE
Confidence            4568999999999999999999875  78899999865421    46778889999999999999999999998899999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC----
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS----  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~----  459 (489)
                      ||||+++++|.+++.......+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++....    
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~  157 (256)
T cd05039          78 VTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD  157 (256)
T ss_pred             EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccccc
Confidence            9999999999999987654468999999999999999999999999999999999999999999999999886432    


Q ss_pred             --------CCCcee------ecccccchHHHHHHHHh-CCcccC
Q 042772          460 --------CKPQVF------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 --------~~~~~~------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                              .+|+..      ..+|+|++|++++++++ |..||.
T Consensus       158 ~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  201 (256)
T cd05039         158 SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  201 (256)
T ss_pred             cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCC
Confidence                    112221      24589999999999986 999885

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.94  E-value=5.4e-26  Score=223.15  Aligned_cols=182  Identities=22%  Similarity=0.289  Sum_probs=154.0

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCc---EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGE---LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~---~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..++|+..+.||+|+||.||+|..+.++.   .+|+|.+....  .....+.+..|+.+++.++||||+++.+++.....
T Consensus         3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (268)
T cd05063           3 HPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGY--TEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKP   80 (268)
T ss_pred             ChHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccC--CHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCC
Confidence            34578999999999999999999876554   79999886542  23345678889999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      .++||||+++++|.+++.... ..+++..+..++.|++.||.|||+.|++|+||||+||+++.++.+||+|||++.....
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~  159 (268)
T cd05063          81 AMIITEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLED  159 (268)
T ss_pred             cEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceeccc
Confidence            999999999999999997643 3488999999999999999999999999999999999999999999999999864321


Q ss_pred             ------------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 ------------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ------------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                        +|+.      ...+|+|++|++++++++ |..||.
T Consensus       160 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~  212 (268)
T cd05063         160 DPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYW  212 (268)
T ss_pred             ccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCC
Confidence                              1111      123489999999999886 999984

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.94  E-value=6.1e-26  Score=222.98  Aligned_cols=179  Identities=24%  Similarity=0.341  Sum_probs=150.2

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++.+.||+|+||.||+|.+..+ ..||+|.+.+...    ....+.+|+++++.++||||+++++.+. ....++
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~-~~valK~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~l   77 (262)
T cd05071           4 PRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYI   77 (262)
T ss_pred             ChHHeeEeeecCCCCCCcEEEEEecCC-ceEEEEecccCcc----CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEE
Confidence            446799999999999999999998765 4599999875322    2246788999999999999999998774 456899


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      ||||+++|+|.+++.......+++..+..++.|++.||.|||+.+++|+||||+||+++.++.++|+|||++.....   
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~  157 (262)
T cd05071          78 VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY  157 (262)
T ss_pred             EEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeecccccc
Confidence            99999999999999875445578999999999999999999999999999999999999999999999999864321   


Q ss_pred             -------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 -------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                   .|+.      ...+|+|++|++++++++ |..||.
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~  205 (262)
T cd05071         158 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  205 (262)
T ss_pred             ccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence                         1111      124689999999999998 888874

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.94  E-value=7.9e-26  Score=225.08  Aligned_cols=185  Identities=22%  Similarity=0.360  Sum_probs=155.2

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCC-----CcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGA-----GELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~t-----g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      .+..++|++.+.||+|+||.||++.....     ...+|+|.+....  .......+.+|+.+++++ +||||+++++++
T Consensus         8 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   85 (293)
T cd05053           8 ELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGVC   85 (293)
T ss_pred             ccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCC--CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            45567899999999999999999998744     3789999886542  233456688899999999 799999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQ--------------PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL  441 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~--------------~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl  441 (489)
                      .....++++|||+++|+|.+++...              ....+++..+..++.|++.||.|||+++|+||||||+|||+
T Consensus        86 ~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~  165 (293)
T cd05053          86 TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLV  165 (293)
T ss_pred             cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEE
Confidence            9999999999999999999999652              23458899999999999999999999999999999999999


Q ss_pred             ecCCcEEEEecCCccccC-----------------CCCcee------ecccccchHHHHHHHHh-CCcccC
Q 042772          442 QKDGHVVLTDFDLSFMTS-----------------CKPQVF------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       442 d~~g~vKL~DFGlS~~~~-----------------~~~~~~------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +.++.+||+|||+++...                 .+|+..      ..+|+|++|++++++++ |..||.
T Consensus       166 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  236 (293)
T cd05053         166 TEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYP  236 (293)
T ss_pred             cCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCC
Confidence            999999999999986422                 112221      23599999999999886 988875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.94  E-value=7.2e-26  Score=221.71  Aligned_cols=180  Identities=23%  Similarity=0.314  Sum_probs=154.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc---hHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN---RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      +|+..+.||+|+||.||++....+++.||+|.+.......   ....+.+..|+.+++.++||||+++++++...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            4788899999999999999999999999999997543221   2345788899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-cEEEEecCCccccCC--
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFDLSFMTSC--  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-~vKL~DFGlS~~~~~--  460 (489)
                      ||||+++++|.+++.+.  ..+++..+..++.|++.||.|||++|++|+||+|+||+++.++ .+||+|||++.....  
T Consensus        81 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~  158 (268)
T cd06630          81 FVEWMAGGSVSHLLSKY--GAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKG  158 (268)
T ss_pred             EEeccCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccccccccccccc
Confidence            99999999999999765  3488999999999999999999999999999999999998776 599999999754321  


Q ss_pred             -----------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                       +|+      ....+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~  209 (268)
T cd06630         159 TGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWN  209 (268)
T ss_pred             ccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCC
Confidence                             111      1134589999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.94  E-value=6.3e-26  Score=225.83  Aligned_cols=179  Identities=23%  Similarity=0.329  Sum_probs=152.0

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .+|++.+.||+|+||.||+|....++..||+|.+.....  ......+.+|+.+++.++|+||+++++++......|+||
T Consensus         5 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           5 TSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTE--EGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCc--CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            579999999999999999999999999999999865422  222335567999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+. ++|.+++.... ..+++..+..++.|++.||.|||+.|++|+||||+||+++.++.+||+|||+++...      
T Consensus        83 e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~  160 (291)
T cd07870          83 EYMH-TDLAQYMIQHP-GGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTY  160 (291)
T ss_pred             eccc-CCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCCCC
Confidence            9995 78888876543 347888899999999999999999999999999999999999999999999886321      


Q ss_pred             ---------CCCcee-------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQVF-------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~~-------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+..       ...|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~  205 (291)
T cd07870         161 SSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFP  205 (291)
T ss_pred             CCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                     123322       23599999999999999999984

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.94  E-value=8.3e-26  Score=226.53  Aligned_cols=177  Identities=23%  Similarity=0.346  Sum_probs=154.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .+|++.+.||+|+||.||+|.+..+++.||+|.+.....   .....+..|+.+++.+.||||+++++.+......|+||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~---~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~   96 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ---PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCc---chHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEee
Confidence            579999999999999999999999999999999875432   23466788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++++|.+++...   .+++..+..++.|++.||.|||++||+|+||||+||+++.++.++|+|||++....      
T Consensus        97 e~~~~~~L~~~~~~~---~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~  173 (296)
T cd06654          97 EYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR  173 (296)
T ss_pred             cccCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhcccccccc
Confidence            999999999998753   37899999999999999999999999999999999999999999999999875321      


Q ss_pred             ---------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.      ...+|+|++|++++++++|..||.
T Consensus       174 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~  217 (296)
T cd06654         174 STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYL  217 (296)
T ss_pred             CcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCC
Confidence                     01221      134599999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.94  E-value=1e-25  Score=224.02  Aligned_cols=174  Identities=34%  Similarity=0.553  Sum_probs=144.1

Q ss_pred             ccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHH---hCCCCCcceeeEEEEeCCeEEEEEecCC
Q 042772          313 PLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS---LLDHPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       313 ~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~---~l~HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      .||+|+||.||++.+..+++.+|+|.+.+..............|..+++   ..+||||+.+++.+...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            4899999999999999999999999997654433332333344444433   3479999999999999999999999999


Q ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC----------
Q 042772          390 GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS----------  459 (489)
Q Consensus       390 ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~----------  459 (489)
                      +++|.+++..+  ..+++..+..++.|++.||.|||+++++||||||+|||+++++.++|+|||++....          
T Consensus        81 ~~~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (279)
T cd05633          81 GGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT  158 (279)
T ss_pred             CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCCC
Confidence            99999998765  348999999999999999999999999999999999999999999999999985321          


Q ss_pred             ---CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                         .+|+.       ...+|+|++|++++++++|..||.
T Consensus       159 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  197 (279)
T cd05633         159 HGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFR  197 (279)
T ss_pred             cCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcC
Confidence               11221       234599999999999999999984

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.94  E-value=1e-25  Score=220.00  Aligned_cols=181  Identities=29%  Similarity=0.389  Sum_probs=156.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||.|+||+||+|....++..+|+|.+......  ...+.+.+|+.+++.++||||+++++.+......+++|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   78 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQ--TSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVM   78 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcc--hHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEE
Confidence            3689999999999999999999989999999998754332  25677889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          386 DFCPGGELFALLDKQPM-KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~-~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |++++++|.+++..... ..+++..+..++.|++.||.|||++|++|+||||+||++++++.++|+|||++.....    
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~  158 (267)
T cd06610          79 PYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDR  158 (267)
T ss_pred             eccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccc
Confidence            99999999999976422 4589999999999999999999999999999999999999999999999998753221    


Q ss_pred             ---------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+.       ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~  208 (267)
T cd06610         159 TRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYS  208 (267)
T ss_pred             cccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCcc
Confidence                           1221       123599999999999999999984

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.94  E-value=9.6e-26  Score=222.90  Aligned_cols=183  Identities=18%  Similarity=0.195  Sum_probs=150.8

Q ss_pred             cccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      ..++|++.+.||+|+||.||+|.+++     ++..||+|.+....  .......+..|+.+++.++||||+++++++...
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~--~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~   81 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG   81 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            44679999999999999999998753     35689999885432  233445678899999999999999999999988


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCC--------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEE
Q 042772          379 THICLITDFCPGGELFALLDKQPM--------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLT  450 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~--------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~  450 (489)
                      ...++||||+++++|.+++.....        ..++...+..++.|++.||.|||+.|++|+||||+||++++++.++|+
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~  161 (277)
T cd05062          82 QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIG  161 (277)
T ss_pred             CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEEC
Confidence            999999999999999999875321        235678889999999999999999999999999999999999999999


Q ss_pred             ecCCccccC-----------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          451 DFDLSFMTS-----------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       451 DFGlS~~~~-----------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |||++....                 .+|+.      ...+|+|++|++++++++ |..||.
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~  223 (277)
T cd05062         162 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ  223 (277)
T ss_pred             CCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCC
Confidence            999985321                 11221      123589999999999997 788874

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.94  E-value=9.3e-26  Score=223.91  Aligned_cols=181  Identities=20%  Similarity=0.311  Sum_probs=148.8

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCc----EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGE----LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~----~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ..++|++.+.||.|+||.||+|.+..+++    .+++|.+...  ........+..|+.+++.++||||+++++++.. .
T Consensus         5 ~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~   81 (279)
T cd05111           5 KETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR--SGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-A   81 (279)
T ss_pred             CHhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccc--cchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-C
Confidence            44679999999999999999999987776    4666766432  223445667778888999999999999998754 4


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++++||+++|+|.+++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||+++...
T Consensus        82 ~~~~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~  160 (279)
T cd05111          82 SLQLVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLY  160 (279)
T ss_pred             ccEEEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceecc
Confidence            5789999999999999997653 348999999999999999999999999999999999999999999999999986431


Q ss_pred             C-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 C-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .                 +|+.      ...+|+|++|++++|+++ |..||.
T Consensus       161 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~  213 (279)
T cd05111         161 PDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYA  213 (279)
T ss_pred             CCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCC
Confidence            1                 1111      123589999999999987 999884

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.94  E-value=8.1e-26  Score=221.15  Aligned_cols=180  Identities=25%  Similarity=0.376  Sum_probs=152.6

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++++.||+|+||.||+|..+. ++.||+|.+.....    ....+..|+.+++.++||||+++++++. ....+
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~-~~~~a~K~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~   76 (260)
T cd05067           3 VPRETLKLVKKLGAGQFGEVWMGYYNG-HTKVAIKSLKQGSM----SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIY   76 (260)
T ss_pred             cchHHceeeeeeccCccceEEeeecCC-CceEEEEEecCCCC----cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcE
Confidence            445679999999999999999998664 67899999875432    2356778999999999999999998764 55789


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      ++|||+++++|.+++.......+++..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++....   
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05067          77 IITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNE  156 (260)
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCC
Confidence            99999999999999987655668999999999999999999999999999999999999999999999999985432   


Q ss_pred             -------------CCCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          460 -------------CKPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 -------------~~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                   .+|+      .....|+|++|++++++++ |..||.
T Consensus       157 ~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  205 (260)
T cd05067         157 YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYP  205 (260)
T ss_pred             cccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCC
Confidence                         0111      1234699999999999998 999984

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.94  E-value=1.8e-25  Score=217.60  Aligned_cols=181  Identities=24%  Similarity=0.463  Sum_probs=157.3

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||++....+++.||+|.+..... .......+.+|+.+++.++||||+++++++......++|||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKM-SPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMD   79 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhC-ChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEe
Confidence            48899999999999999999999999999999875433 23345678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+++++|.+++.......+++..+..++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++.....      
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~  159 (256)
T cd08218          80 YCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELAR  159 (256)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhh
Confidence            99999999999875544578999999999999999999999999999999999999999999999999864321      


Q ss_pred             ---------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +|+.      ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~  202 (256)
T cd08218         160 TCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFE  202 (256)
T ss_pred             hccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCcc
Confidence                     1111      134699999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.94  E-value=1.4e-25  Score=219.40  Aligned_cols=173  Identities=36%  Similarity=0.675  Sum_probs=152.7

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCH
Q 042772          314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL  393 (489)
Q Consensus       314 LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL  393 (489)
                      ||.|+||.||+|.+..+++.+|+|.+.+.........+.+..|+.+++.++||||+++++.+.+....+++|||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            68999999999999999999999999876554455567888999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC------------
Q 042772          394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK------------  461 (489)
Q Consensus       394 ~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~------------  461 (489)
                      .+++.+.  ..+++..+..++.|++.||.|||+++++|+||+|+||+++.++.++|+|||++......            
T Consensus        81 ~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~  158 (262)
T cd05572          81 WTILRDR--GLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEY  158 (262)
T ss_pred             HHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccccCCcCc
Confidence            9999875  34899999999999999999999999999999999999999999999999998654321            


Q ss_pred             --Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          462 --PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 --~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                        |+.      ...+|+|++|.+++++++|..||.
T Consensus       159 ~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  193 (262)
T cd05572         159 VAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFG  193 (262)
T ss_pred             cChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcC
Confidence              211      123589999999999999999985

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.94  E-value=1.5e-25  Score=218.62  Aligned_cols=179  Identities=27%  Similarity=0.443  Sum_probs=157.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||+|....+++.|++|.+...... ......+..|+++++.++||||+++++.+......++|+|
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND-PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc-hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEe
Confidence            588899999999999999999989999999999765432 4567889999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+++++|.+++...  ..+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.+||+|||++.....      
T Consensus        80 ~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~  157 (264)
T cd06626          80 YCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMG  157 (264)
T ss_pred             cCCCCcHHHHHhhc--CCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCccc
Confidence            99999999999775  3478999999999999999999999999999999999999999999999998864321      


Q ss_pred             -------------CCc---------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQ---------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~---------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+         ....+|+|++|.+++++++|..||.
T Consensus       158 ~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~  207 (264)
T cd06626         158 EEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWS  207 (264)
T ss_pred             ccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCcc
Confidence                         111         2234589999999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.94  E-value=9.4e-26  Score=226.25  Aligned_cols=177  Identities=23%  Similarity=0.342  Sum_probs=154.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .+|++++.||+|+||.||+|....+++.||+|.+....   ......+..|+.+++.++||||+++++++......|+||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   95 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQ---QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   95 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCc---cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEee
Confidence            67999999999999999999999999999999986542   223456778999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++++|.+++...   .+++..+..++.|++.||.|||+.|++||||||+||+++.++.++|+|||++.....     
T Consensus        96 e~~~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~  172 (297)
T cd06656          96 EYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR  172 (297)
T ss_pred             cccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccCc
Confidence            999999999998753   378999999999999999999999999999999999999999999999998754321     


Q ss_pred             ----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .|+.      ....|+|++|++++++++|..||.
T Consensus       173 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~  216 (297)
T cd06656         173 STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYL  216 (297)
T ss_pred             CcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                      1111      123589999999999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.94  E-value=1.7e-25  Score=217.71  Aligned_cols=181  Identities=24%  Similarity=0.429  Sum_probs=154.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-CCeEEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-STHICLIT  385 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~~~~~lVm  385 (489)
                      .|++.+.||.|++|.||++.++.+++.||+|.+..... .....+.+..|+.+++.++|||++++++.+.. ...+|++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~   79 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNA-SRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVM   79 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhc-CHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEe
Confidence            48899999999999999999999999999999865432 33445678889999999999999999998764 44689999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++++|.+++.......+++.++..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.....     
T Consensus        80 e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~  159 (257)
T cd08223          80 GFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMA  159 (257)
T ss_pred             cccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccCCcc
Confidence            999999999999876555689999999999999999999999999999999999999999999999998854321     


Q ss_pred             ----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|+.      ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~  203 (257)
T cd08223         160 STLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFN  203 (257)
T ss_pred             ccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCC
Confidence                      1221      124599999999999999999885

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.94  E-value=7.1e-26  Score=221.75  Aligned_cols=178  Identities=25%  Similarity=0.361  Sum_probs=151.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+.. +..+|+|.+.....    ....+..|+.+++.++||||+++++++......+++
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~-~~~~aik~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   77 (256)
T cd05113           3 PKDLTFLKELGTGQFGVVKYGKWRG-QYDVAIKMIKEGSM----SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIV   77 (256)
T ss_pred             hHHeEEeeEecCcccceEEEEEecC-CCcEEEEEcCCCcc----cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEE
Confidence            3579999999999999999998765 45699998865422    235678899999999999999999999988899999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+++|+|.+++..... .+++..+..++.|++.||.|||+.|++|+||||+||+++.++.+||+|||++.....    
T Consensus        78 ~e~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~  156 (256)
T cd05113          78 TEYMSNGCLLNYLREHGK-RFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYT  156 (256)
T ss_pred             EEcCCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCcee
Confidence            999999999999976533 589999999999999999999999999999999999999999999999998763221    


Q ss_pred             ------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                  +|+      ....+|+|++|++++++++ |..||.
T Consensus       157 ~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~  203 (256)
T cd05113         157 SSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYE  203 (256)
T ss_pred             ecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcC
Confidence                        111      1234689999999999987 999885

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.94  E-value=8.1e-26  Score=225.56  Aligned_cols=179  Identities=24%  Similarity=0.315  Sum_probs=152.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc--chHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML--NRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +|++.+.||.|+||.||+|.+..+++.||+|.+......  .......+..|+++++.++||||+++++++.+....++|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            478889999999999999999999999999999765432  122345567799999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      |||+ +++|.+++.... ..+++..+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||++......   
T Consensus        81 ~e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~  158 (298)
T cd07841          81 FEFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRK  158 (298)
T ss_pred             Eccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCcc
Confidence            9999 899999998754 35899999999999999999999999999999999999999999999999998643211   


Q ss_pred             ------------Cce-------eecccccchHHHHHHHHhCCccc
Q 042772          462 ------------PQV-------FYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       462 ------------~~~-------~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                                  |+.       ....|+|++|++++++++|..+|
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~  203 (298)
T cd07841         159 MTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFL  203 (298)
T ss_pred             ccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccc
Confidence                        111       12358899999999999997665

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.94  E-value=1.2e-25  Score=223.96  Aligned_cols=182  Identities=25%  Similarity=0.365  Sum_probs=153.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCC----------------cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCc
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAG----------------ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL  368 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg----------------~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI  368 (489)
                      ..+|++++.||+|+||.||+|.+..++                ..||+|.+....  .......+.+|+.+++.++||||
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i   81 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDA--SDNAREDFLKEVKILSRLSDPNI   81 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhcCCCCE
Confidence            457999999999999999999876543                568999887542  23456778899999999999999


Q ss_pred             ceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCC---------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCE
Q 042772          369 PTLYASFQTSTHICLITDFCPGGELFALLDKQP---------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI  439 (489)
Q Consensus       369 v~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~---------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NI  439 (489)
                      +++++++......+++|||+++++|.+++....         ...+++..+..++.|++.||.|||++|++||||||+||
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Ni  161 (296)
T cd05051          82 ARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNC  161 (296)
T ss_pred             eEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhce
Confidence            999999999999999999999999999997653         12589999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEecCCccccC-----------------CCCce------eecccccchHHHHHHHHh--CCcccC
Q 042772          440 LLQKDGHVVLTDFDLSFMTS-----------------CKPQV------FYHAHVNGFYFIMYKWLT--GYFTYV  488 (489)
Q Consensus       440 Lld~~g~vKL~DFGlS~~~~-----------------~~~~~------~~~~~v~s~g~~a~e~~~--G~lpY~  488 (489)
                      +++.++.++|+|||++....                 .+|+.      ...+|+|++|++++++++  |..||.
T Consensus       162 li~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~  235 (296)
T cd05051         162 LVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYE  235 (296)
T ss_pred             eecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCC
Confidence            99999999999999986421                 01221      234689999999999987  666663

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=9.3e-27  Score=252.59  Aligned_cols=185  Identities=23%  Similarity=0.327  Sum_probs=158.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      .+...+....+.||+|.||+||+|+..+     ....||||.++..  .+.+..++|.+|++++..++|||||+|+|+|.
T Consensus       482 ~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~--a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~  559 (774)
T KOG1026|consen  482 EIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDK--AENQARQDFRREAELLAELQHPNIVRLLGVCR  559 (774)
T ss_pred             EechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccc--ccHHHHHHHHHHHHHHHhccCCCeEEEEEEEc
Confidence            4566778889999999999999998653     3468999999754  34446789999999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhC--------C----CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC
Q 042772          377 TSTHICLITDFCPGGELFALLDKQ--------P----MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD  444 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~--------~----~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~  444 (489)
                      ..+.+|+|+|||..|+|.++|...        .    ..+|+..+.+.|+.||+.||.||-++.+|||||..+|+||.++
T Consensus       560 ~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~  639 (774)
T KOG1026|consen  560 EGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGEN  639 (774)
T ss_pred             cCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccc
Confidence            999999999999999999999752        1    2238899999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCccccCC-----------------------CCceeecccccchHHHHHHH-HhCCcccC
Q 042772          445 GHVVLTDFDLSFMTSC-----------------------KPQVFYHAHVNGFYFIMYKW-LTGYFTYV  488 (489)
Q Consensus       445 g~vKL~DFGlS~~~~~-----------------------~~~~~~~~~v~s~g~~a~e~-~~G~lpY~  488 (489)
                      -.|||+|||+|+....                       .......+|||+||+.++|+ ..|..||.
T Consensus       640 l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~  707 (774)
T KOG1026|consen  640 LVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYY  707 (774)
T ss_pred             eEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCccc
Confidence            9999999999975431                       12223456999999999996 68999984

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.94  E-value=1.5e-25  Score=222.01  Aligned_cols=178  Identities=26%  Similarity=0.401  Sum_probs=148.3

Q ss_pred             cCcccccccCCCCceEEEEEEE----cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--CC
Q 042772          306 HHFKPIKPLGCGDTGSVHLVEL----QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--ST  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~----~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~  379 (489)
                      .+|++++.||+|+||.||+|..    ..++..||+|.+...   .....+.+..|+++++.++||||+++++++..  ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS---TAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR   80 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCC
Confidence            4799999999999999999984    456889999998654   34455778899999999999999999997653  34


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+++||||+++++|.+++.... ..+++..+..++.|++.||.|||++|++||||||+||++++++.+||+|||++....
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  159 (284)
T cd05081          81 NLRLVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             ceEEEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCccccccc
Confidence            6899999999999999997643 347899999999999999999999999999999999999999999999999987532


Q ss_pred             CC------------------Cc------eeecccccchHHHHHHHHhCCccc
Q 042772          460 CK------------------PQ------VFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       460 ~~------------------~~------~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      ..                  |+      .....|+|++|++++|+++|..++
T Consensus       160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~  211 (284)
T cd05081         160 QDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKS  211 (284)
T ss_pred             CCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcC
Confidence            11                  11      112348889999999998876553

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.94  E-value=1.2e-25  Score=225.02  Aligned_cols=181  Identities=22%  Similarity=0.316  Sum_probs=151.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCc--EEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGE--LYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~--~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~  382 (489)
                      ++|++.+.||+|+||.||+|..+.++.  .+++|.++..  ......+.+..|+.++.++ +||||+++++++.....+|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~   79 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEF--ASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLY   79 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEcccc--CCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcce
Confidence            469999999999999999999887764  4688877532  2334456788899999999 7999999999999989999


Q ss_pred             EEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEE
Q 042772          383 LITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV  448 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vK  448 (489)
                      ++|||+++++|.+++....              ...+++..+..++.|++.||+|||++|++||||||+|||++.++.+|
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~k  159 (297)
T cd05089          80 IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASK  159 (297)
T ss_pred             EEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEE
Confidence            9999999999999997532              12478899999999999999999999999999999999999999999


Q ss_pred             EEecCCccccC--------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          449 LTDFDLSFMTS--------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       449 L~DFGlS~~~~--------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |+|||++....              .+|+.      ...+|+|++|++++++++ |..||.
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~  220 (297)
T cd05089         160 IADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYC  220 (297)
T ss_pred             ECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence            99999984211              11221      234699999999999996 999984

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.94  E-value=1.1e-25  Score=226.57  Aligned_cols=184  Identities=22%  Similarity=0.327  Sum_probs=154.7

Q ss_pred             ccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQ  376 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  376 (489)
                      +..++|.+.+.||+|+||.||+|.+.     .++..+|+|.++...  .......+..|+.+++++ +||||+++++++.
T Consensus        32 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  109 (302)
T cd05055          32 FPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTA--HSSEREALMSELKIMSHLGNHENIVNLLGACT  109 (302)
T ss_pred             ccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccC--ChHHHHHHHHHHHHHHhccCCCCcceEEEEEe
Confidence            44567999999999999999999853     345689999886542  234456788899999999 7999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          377 TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      ..+..+++|||+++|+|.+++.......+++..+..++.|++.||.|||+++|+|+||||+|||++.++.++|+|||++.
T Consensus       110 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~  189 (302)
T cd05055         110 IGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLAR  189 (302)
T ss_pred             cCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccc
Confidence            99999999999999999999986544448999999999999999999999999999999999999999999999999986


Q ss_pred             ccCCC-----------------Cce------eecccccchHHHHHHHHh-CCcccC
Q 042772          457 MTSCK-----------------PQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       457 ~~~~~-----------------~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .....                 |+.      ...+|+|++|++++++++ |..||.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~  245 (302)
T cd05055         190 DIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYP  245 (302)
T ss_pred             cccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcC
Confidence            43211                 111      123489999999999987 988874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.6e-25  Score=221.46  Aligned_cols=180  Identities=23%  Similarity=0.330  Sum_probs=153.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCc----EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGE----LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~----~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..+|++.+.||+|+||.||+|.++.+|.    .+|+|.+....  .......+.+|+.+++.++||||+++++++.. ..
T Consensus         6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~   82 (279)
T cd05057           6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREET--SPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQ   82 (279)
T ss_pred             HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-Cc
Confidence            4679999999999999999999877664    68999876543  24455678889999999999999999999887 78


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      .+++|||+++|+|.+++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||+++....
T Consensus        83 ~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~  161 (279)
T cd05057          83 VQLITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDV  161 (279)
T ss_pred             eEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccC
Confidence            999999999999999998753 3489999999999999999999999999999999999999999999999999864321


Q ss_pred             -----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 -----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                       .|+.      ...+|+|++|++++++++ |..||.
T Consensus       162 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  213 (279)
T cd05057         162 DEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYE  213 (279)
T ss_pred             cccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCC
Confidence                             1111      123588999999999997 999985

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.94  E-value=1.3e-25  Score=223.64  Aligned_cols=184  Identities=17%  Similarity=0.197  Sum_probs=150.2

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      +..++|++.+.||+|+||.||+|..+.     .+..||+|.++...  .......+.+|..+++.++||||+++++++..
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   80 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA--SLRERIEFLNEASVMKGFTCHHVVRLLGVVSK   80 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC--CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            456789999999999999999997653     35689999886442  22334567789999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEE
Q 042772          378 STHICLITDFCPGGELFALLDKQP--------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVL  449 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~--------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL  449 (489)
                      ....|+||||+++|+|.+++....        ...++...+..++.|++.||.|||+++|+||||||+||+++.++.++|
T Consensus        81 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          81 GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEE
Confidence            899999999999999999997531        123466788899999999999999999999999999999999999999


Q ss_pred             EecCCccccCC-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          450 TDFDLSFMTSC-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       450 ~DFGlS~~~~~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +|||+++....                 +|+.      ...+|+|++|++++++++ |..||.
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~  223 (288)
T cd05061         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQ  223 (288)
T ss_pred             CcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCC
Confidence            99999863210                 1111      123488999999999987 777773

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.94  E-value=2.2e-25  Score=219.02  Aligned_cols=180  Identities=25%  Similarity=0.328  Sum_probs=153.6

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc--chHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--CCeEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML--NRNKVHRACIEREIMSLLDHPFLPTLYASFQT--STHIC  382 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~~~  382 (489)
                      +|+..+.||+|+||.||+|.+..++..||+|.+......  .......+.+|+.+++.++||||+++++++..  ...++
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            689999999999999999999999999999998654321  23345678889999999999999999998875  36789


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      ++|||+++++|.+++....  .+++.....++.|++.||.|||+++++|+||||+||+++.++.+||+|||++.....  
T Consensus        83 l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~  160 (266)
T cd06651          83 IFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTIC  160 (266)
T ss_pred             EEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCcccccccc
Confidence            9999999999999997653  488999999999999999999999999999999999999999999999999853211  


Q ss_pred             ----------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                      +|+.      ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~  210 (266)
T cd06651         161 MSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWA  210 (266)
T ss_pred             ccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcc
Confidence                            1111      124589999999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=6.5e-26  Score=236.98  Aligned_cols=173  Identities=21%  Similarity=0.346  Sum_probs=147.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcC--CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQG--AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ..+|.+++.||.|+||.||+|...+  +++.||+|.+...        ....+|+.+++.++||||+++++++.....+|
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~--------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~  162 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG--------KTPGREIDILKTISHRAIINLIHAYRWKSTVC  162 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc--------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEE
Confidence            3579999999999999999998653  5678999988543        12356999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      ++||++ +++|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....  
T Consensus       163 lv~e~~-~~~l~~~l~~~--~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~  239 (392)
T PHA03207        163 MVMPKY-KCDLFTYVDRS--GPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHP  239 (392)
T ss_pred             EEehhc-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCccc
Confidence            999999 47999999554  4589999999999999999999999999999999999999999999999999854321  


Q ss_pred             ---------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+.      ...+|+|++|++++++++|..||.
T Consensus       240 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~  288 (392)
T PHA03207        240 DTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLF  288 (392)
T ss_pred             ccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                           1221      234699999999999999999983

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.94  E-value=1.5e-25  Score=218.81  Aligned_cols=179  Identities=22%  Similarity=0.398  Sum_probs=151.3

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE-eCCeE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ-TSTHI  381 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-~~~~~  381 (489)
                      +...+|++.+.||+|+||.||++...  |..+|+|.+...     ...+.+.+|+.+++.++|||++++++++. .....
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~--~~~~~~k~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   75 (256)
T cd05082           3 LNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKND-----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL   75 (256)
T ss_pred             ccHHhCeeeeeecccCCCeEEEEEEc--CCcEEEEEeCCC-----chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCce
Confidence            34568999999999999999999765  778999988543     22456788999999999999999999764 45679


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      +++|||+++++|.+++.......+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||++..... 
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  155 (256)
T cd05082          76 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  155 (256)
T ss_pred             EEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceecccc
Confidence            9999999999999999876555688999999999999999999999999999999999999999999999999864321 


Q ss_pred             -----------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 -----------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -----------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                 +|+      ....+|+|++|++++++++ |..||.
T Consensus       156 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~  201 (256)
T cd05082         156 QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  201 (256)
T ss_pred             CCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCC
Confidence                       121      1224699999999999996 999884

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.94  E-value=1.4e-25  Score=222.02  Aligned_cols=182  Identities=22%  Similarity=0.303  Sum_probs=153.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      .++|.+.+.||+|+||.||+|.+..     ++..||+|.+...  ........+..|+.+++.++||||+++++++....
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   82 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPES--CSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERL   82 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCC--CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC
Confidence            3579999999999999999999987     7789999988643  22334456888999999999999999999999888


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC---cEEEEe
Q 042772          380 HICLITDFCPGGELFALLDKQPM-----KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---HVVLTD  451 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~-----~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g---~vKL~D  451 (489)
                      ..+++|||+++++|.+++.....     ..+++..+..++.||+.||.|||+++++|+||||+||+++.++   .+||+|
T Consensus        83 ~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~d  162 (277)
T cd05036          83 PRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIAD  162 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEecc
Confidence            99999999999999999976521     2488999999999999999999999999999999999998765   599999


Q ss_pred             cCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          452 FDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       452 FGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||+++....                 +|+      ....+|+|++|++++++++ |..||.
T Consensus       163 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~  223 (277)
T cd05036         163 FGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYP  223 (277)
T ss_pred             CccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCC
Confidence            999864321                 111      1234689999999999985 999985

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.94  E-value=1.2e-25  Score=220.18  Aligned_cols=179  Identities=21%  Similarity=0.323  Sum_probs=153.0

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccc---cchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM---LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~---~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      +|+..+.||.|+||.||+|.. .+++.+|+|.+.....   ........+.+|+++++.++|+||+++++++......++
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   79 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISI   79 (265)
T ss_pred             CccccceEeccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEE
Confidence            478899999999999999986 4688999998864321   123345678889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC----
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS----  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~----  459 (489)
                      +|||+++++|.+++.+.  ..+++..+..++.|++.||.|||+.+++|+||+|+||++++++.++|+|||++....    
T Consensus        80 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  157 (265)
T cd06631          80 FMEFVPGGSISSILNRF--GPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGL  157 (265)
T ss_pred             EEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhccc
Confidence            99999999999999775  347899999999999999999999999999999999999999999999999875321    


Q ss_pred             -----------------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 -----------------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----------------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                       .+|+.      ...+|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~  209 (265)
T cd06631         158 HGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLA  209 (265)
T ss_pred             cccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccc
Confidence                             11222      134689999999999999999985

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.94  E-value=9.3e-26  Score=223.47  Aligned_cols=183  Identities=17%  Similarity=0.293  Sum_probs=151.8

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCC-----CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGA-----GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~t-----g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      ...+|++.+.||.|+||.||+|.+..+     ++.||+|.++...  .......+..|..+++.++||||+++++++...
T Consensus         3 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~   80 (283)
T cd05091           3 NLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA--EGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKE   80 (283)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC--CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC
Confidence            456799999999999999999987643     5789999987442  233456688899999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC
Q 042772          379 THICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD  444 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~  444 (489)
                      ...++++||+++++|.+++....              ...+++..+..++.|++.||.|||++||+||||||+||+++++
T Consensus        81 ~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~  160 (283)
T cd05091          81 QPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDK  160 (283)
T ss_pred             CceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCC
Confidence            99999999999999999986321              2347888899999999999999999999999999999999999


Q ss_pred             CcEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          445 GHVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       445 g~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +.+||+|||+++....                 +|+      ....+|+|++|++++|+++ |..||.
T Consensus       161 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~  228 (283)
T cd05091         161 LNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYC  228 (283)
T ss_pred             CceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCC
Confidence            9999999998763210                 111      1224599999999999986 887874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=1.2e-25  Score=223.16  Aligned_cols=181  Identities=26%  Similarity=0.379  Sum_probs=157.1

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++++.||+|+||+||++.+..+++.||+|.+....  .......+.+|+++++.++||||+++++++.....+++
T Consensus         3 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l   80 (284)
T cd06620           3 RNEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGA--KSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICM   80 (284)
T ss_pred             cHHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecC--cchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEE
Confidence            3467999999999999999999999999999999886532  23345678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      ||||+++++|.+++...  +.+++..+..++.|++.||.|||+ .+++|+||||+||++++++.++|+|||++....   
T Consensus        81 v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~  158 (284)
T cd06620          81 CMEFMDCGSLDRIYKKG--GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI  158 (284)
T ss_pred             EEecCCCCCHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhc
Confidence            99999999999998764  348999999999999999999997 699999999999999999999999999875321   


Q ss_pred             ----------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~  203 (284)
T cd06620         159 ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFA  203 (284)
T ss_pred             cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCc
Confidence                      11221      235689999999999999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.94  E-value=1.9e-25  Score=222.49  Aligned_cols=181  Identities=20%  Similarity=0.296  Sum_probs=152.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      .++|.+.+.||+|+||.||++...     .++..+|+|.+...   .....+.+..|+++++.++||||+++++++....
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD   80 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCc---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            357999999999999999999863     34567999988643   2345667889999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEE
Q 042772          380 HICLITDFCPGGELFALLDKQP-----------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV  448 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~-----------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vK  448 (489)
                      .++++|||+++++|.+++....           ...+++..+..++.|++.||+|||++|++||||||+||++++++.+|
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~k  160 (288)
T cd05093          81 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVK  160 (288)
T ss_pred             ccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEE
Confidence            9999999999999999997542           12489999999999999999999999999999999999999999999


Q ss_pred             EEecCCccccC-----------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          449 LTDFDLSFMTS-----------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       449 L~DFGlS~~~~-----------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |+|||++....                 .+|+.      ...+|+|++|+++++|++ |..||.
T Consensus       161 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~  224 (288)
T cd05093         161 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWY  224 (288)
T ss_pred             eccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999986321                 11221      124689999999999998 888873

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.94  E-value=4.1e-26  Score=225.84  Aligned_cols=178  Identities=20%  Similarity=0.327  Sum_probs=151.6

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||+|.++.+|+.||+|.+..... .......+..|+.+++.++||||+++++++.+....++++|
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~-~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccc-cccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEe
Confidence            48889999999999999999999999999999875422 22233556779999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      |++ ++|.+++.... ..+++..+..++.||+.||.|||++|++||||||+||+++.++.+||+|||++....       
T Consensus        80 ~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  157 (284)
T cd07839          80 YCD-QDLKKYFDSCN-GDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYS  157 (284)
T ss_pred             cCC-CCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcC
Confidence            996 58988887543 348999999999999999999999999999999999999999999999999886432       


Q ss_pred             --------CCCce-------eecccccchHHHHHHHHhCCccc
Q 042772          460 --------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       460 --------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                              .+|+.       ...+|+|++|++++++++|..|+
T Consensus       158 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~  200 (284)
T cd07839         158 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  200 (284)
T ss_pred             CCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCC
Confidence                    11222       22358999999999999998885

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.94  E-value=1.2e-25  Score=230.59  Aligned_cols=184  Identities=23%  Similarity=0.335  Sum_probs=149.9

Q ss_pred             ccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQ  376 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  376 (489)
                      +..++|++.+.||+|+||.||+|.+.     .+++.||+|.++...  .......+..|+.++..+ +||||+++++++.
T Consensus         4 ~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~   81 (343)
T cd05103           4 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLGACT   81 (343)
T ss_pred             cchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCC--ChHHHHHHHHHHHHHHhccCCccHhhhcceee
Confidence            34568999999999999999999853     457899999996542  233456788899999999 6899999999876


Q ss_pred             eC-CeEEEEEecCCCCCHHHHHhhCC------------------------------------------------------
Q 042772          377 TS-THICLITDFCPGGELFALLDKQP------------------------------------------------------  401 (489)
Q Consensus       377 ~~-~~~~lVmEy~~ggsL~~~L~~~~------------------------------------------------------  401 (489)
                      .. ..++++|||+++|+|.+++....                                                      
T Consensus        82 ~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (343)
T cd05103          82 KPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDV  161 (343)
T ss_pred             cCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccc
Confidence            54 56899999999999999986531                                                      


Q ss_pred             -----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----------
Q 042772          402 -----------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----------  460 (489)
Q Consensus       402 -----------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----------  460 (489)
                                 ...++...+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++.....          
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  241 (343)
T cd05103         162 EEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDA  241 (343)
T ss_pred             hhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCC
Confidence                       12367788889999999999999999999999999999999999999999999864211          


Q ss_pred             -------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 -------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                             +|+.      ...+|+|++|++++++++ |..||.
T Consensus       242 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  283 (343)
T cd05103         242 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP  283 (343)
T ss_pred             CCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence                   1211      123489999999999985 998884

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.6e-25  Score=220.69  Aligned_cols=178  Identities=27%  Similarity=0.426  Sum_probs=156.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||.|+||.||+|.+..+++.||+|.+....  .......+..|+.+++.++||||+++++++.....+|+|+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEE--AEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIM   78 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccc--cchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEE
Confidence            36899999999999999999999999999999987542  2344566788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++++|.+++...   .+++..+..++.|++.||.|||+++++|+||+|+||++++++.++|+|||++.....     
T Consensus        79 e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~  155 (274)
T cd06609          79 EYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKR  155 (274)
T ss_pred             EeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeeccccccc
Confidence            999999999999864   589999999999999999999999999999999999999999999999998854321     


Q ss_pred             ----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|+.      ...+|+|++|++++++++|..||.
T Consensus       156 ~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~  199 (274)
T cd06609         156 NTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLS  199 (274)
T ss_pred             ccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence                      1221      234699999999999999999984

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.94  E-value=1.7e-25  Score=219.88  Aligned_cols=180  Identities=25%  Similarity=0.309  Sum_probs=146.8

Q ss_pred             cccccccCCCCceEEEEEEEcCCCc--EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------C
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGE--LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------T  379 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~--~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------~  379 (489)
                      |.+.+.||+|+||.||+|.+..++.  .+|+|.++... ........+..|..+++.++||||+++++.+...      .
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAI-CTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCc-CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence            3567889999999999999887765  68999886543 2345567888899999999999999999976432      2


Q ss_pred             eEEEEEecCCCCCHHHHHhhC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          380 HICLITDFCPGGELFALLDKQ----PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~----~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      ..+++|||+++|+|.+++...    ....+++..+..++.|++.||.|||+++|+||||||+|||+++++.+||+|||++
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  159 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLS  159 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcc
Confidence            578999999999999987432    2234789999999999999999999999999999999999999999999999998


Q ss_pred             cccCCC-----------C-c-----------eeecccccchHHHHHHHHh-CCcccC
Q 042772          456 FMTSCK-----------P-Q-----------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       456 ~~~~~~-----------~-~-----------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ......           + .           .....|+|++|++++++++ |..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  216 (272)
T cd05075         160 KKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYP  216 (272)
T ss_pred             cccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCC
Confidence            643210           0 0           1124589999999999998 788874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.94  E-value=2.2e-25  Score=220.62  Aligned_cols=177  Identities=24%  Similarity=0.362  Sum_probs=154.7

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|+.++.||.|+||.||+|.+..++..||+|.+....  .......+..|+.+++.+.||||+++++++.+....|+|||
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIME   82 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccc--cHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEe
Confidence            5888999999999999999999999999999987542  23456788889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+++++|.+++...   .+++..+..++.|++.||.|||+.+++|+||+|+||+++.++.++|+|||++.....      
T Consensus        83 ~~~~~~L~~~i~~~---~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~  159 (277)
T cd06640          83 YLGGGSALDLLRAG---PFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRN  159 (277)
T ss_pred             cCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCccccc
Confidence            99999999998753   478999999999999999999999999999999999999999999999999853321      


Q ss_pred             ---------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +|+.      ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~  202 (277)
T cd06640         160 TFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNS  202 (277)
T ss_pred             cccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCC
Confidence                     1211      124589999999999999999984

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.94  E-value=1.3e-25  Score=253.50  Aligned_cols=186  Identities=24%  Similarity=0.394  Sum_probs=155.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--C
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--T  379 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~  379 (489)
                      ...+.+|++++.||.|+||.||+|.+..+++.+|+|.+..... .......+..|+.+++.++||||++++++|...  .
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l-~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~   87 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGL-KEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQ   87 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEecccc-CHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCC
Confidence            3456789999999999999999999999999999999976533 334557788899999999999999999988653  5


Q ss_pred             eEEEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCCCCEEEec-------
Q 042772          380 HICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCL-------GIIYRDLKPENILLQK-------  443 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~-------gIvHrDLKP~NILld~-------  443 (489)
                      .+||||||+++|+|.++|...  ....+++..++.|+.||+.||.|||+.       +|+||||||+||||+.       
T Consensus        88 ~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~  167 (1021)
T PTZ00266         88 KLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGK  167 (1021)
T ss_pred             EEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccc
Confidence            799999999999999999753  224589999999999999999999984       4999999999999964       


Q ss_pred             ----------CCcEEEEecCCccccC--------------CCCcee--------ecccccchHHHHHHHHhCCcccC
Q 042772          444 ----------DGHVVLTDFDLSFMTS--------------CKPQVF--------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       444 ----------~g~vKL~DFGlS~~~~--------------~~~~~~--------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+.+||+|||++....              .+|+.+        ..+|+|++|++++++++|..||.
T Consensus       168 i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~  244 (1021)
T PTZ00266        168 ITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFH  244 (1021)
T ss_pred             ccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCC
Confidence                      2358999999986432              122222        24599999999999999999985

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.93  E-value=1.8e-25  Score=219.95  Aligned_cols=175  Identities=24%  Similarity=0.272  Sum_probs=144.4

Q ss_pred             cccCCCCceEEEEEEEc--CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCC
Q 042772          312 KPLGCGDTGSVHLVELQ--GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~--~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      +.||+|+||.||+|...  .++..+|+|.+....  .......+.+|+.+++.++||||+++++++.+....++||||++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSA--SVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCP   78 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCC--ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCC
Confidence            36899999999999865  345789999886542  22334567889999999999999999999999889999999999


Q ss_pred             CCCHHHHHhhCC---CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          390 GGELFALLDKQP---MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       390 ggsL~~~L~~~~---~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      +|+|.+++....   ....++..+..++.|++.||.|||+++++||||||+||+++.++.+||+|||++....       
T Consensus        79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~  158 (269)
T cd05087          79 LGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVT  158 (269)
T ss_pred             CCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeec
Confidence            999999997532   1235677888899999999999999999999999999999999999999999885321       


Q ss_pred             ----------CCCce-------------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 ----------CKPQV-------------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ----------~~~~~-------------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                .+|+.             ...+|+|++|++++++++ |..||.
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~  211 (269)
T cd05087         159 PDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYR  211 (269)
T ss_pred             CCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCC
Confidence                      11222             235699999999999985 999985

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.93  E-value=1.8e-25  Score=220.81  Aligned_cols=180  Identities=27%  Similarity=0.388  Sum_probs=149.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHH-HHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-MSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~i-l~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ++|++.+.||+|+||.||+|.++.+|+.||+|.++.....  .....+..|..+ ++.++||||+++++++.....+|++
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv   78 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNS--QEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWIC   78 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCc--HHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEE
Confidence            3689999999999999999999999999999998765321  223344556554 6667899999999999999999999


Q ss_pred             EecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          385 TDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      |||++ |+|.+++...  ....+++..+..++.|++.||.|||++ +++||||||+||+++.++.+||+|||++....  
T Consensus        79 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  157 (283)
T cd06617          79 MEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDS  157 (283)
T ss_pred             hhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccccccc
Confidence            99995 6888887652  234589999999999999999999997 99999999999999999999999999986321  


Q ss_pred             ------------CCCce----------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------CKPQV----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------~~~~~----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .+|+.          ...+|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  208 (283)
T cd06617         158 VAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYD  208 (283)
T ss_pred             cccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCC
Confidence                        11222          134699999999999999999984

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.93  E-value=1.1e-25  Score=218.85  Aligned_cols=173  Identities=38%  Similarity=0.674  Sum_probs=152.3

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCH
Q 042772          314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL  393 (489)
Q Consensus       314 LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL  393 (489)
                      ||.|+||.||+|.+..+|+.+++|.+.............+..|+.+++.++||||+++++.+......|++|||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            68999999999999999999999999766544456677888999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC------------
Q 042772          394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK------------  461 (489)
Q Consensus       394 ~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~------------  461 (489)
                      .+++....  .+++..+..++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++......            
T Consensus        81 ~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  158 (265)
T cd05579          81 ASLLENVG--SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKED  158 (265)
T ss_pred             HHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccc
Confidence            99998753  5899999999999999999999999999999999999999999999999987643221            


Q ss_pred             -----------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 -----------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -----------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 |+      .....|+|++|.+++++++|..||.
T Consensus       159 ~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~  202 (265)
T cd05579         159 KRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFH  202 (265)
T ss_pred             cCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence                       11      1124689999999999999999985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.93  E-value=1.6e-26  Score=226.33  Aligned_cols=172  Identities=30%  Similarity=0.399  Sum_probs=149.4

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||+|+|+.|--|....+|..||+|++.+.   ......++.+|++++.+++ |+||+.++++|+++...|||||-+.|
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq---~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~G  160 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ---PGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRG  160 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcC---CchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccC
Confidence            6799999999999999999999999999886   3455678899999999885 99999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC---cEEEEecCCccccC--------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---HVVLTDFDLSFMTS--------  459 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g---~vKL~DFGlS~~~~--------  459 (489)
                      |+|.+++.++  +.|++.++..++.+|+.||.|||.+||.||||||+|||..+..   -||||||.+..-..        
T Consensus       161 GplLshI~~~--~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spa  238 (463)
T KOG0607|consen  161 GPLLSHIQKR--KHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPA  238 (463)
T ss_pred             chHHHHHHHh--hhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCC
Confidence            9999999886  4599999999999999999999999999999999999996554   48999999863111        


Q ss_pred             --------C-----------------CCceeecccccchHHHHHHHHhCCcccC
Q 042772          460 --------C-----------------KPQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~-----------------~~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              +                 ..-+-...|.|++|.++|+|+.|..||.
T Consensus       239 stP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFv  292 (463)
T KOG0607|consen  239 STPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFV  292 (463)
T ss_pred             CCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCcc
Confidence                    0                 0111234478999999999999999985

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.5e-25  Score=223.95  Aligned_cols=182  Identities=24%  Similarity=0.362  Sum_probs=150.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCC--------------CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcce
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGA--------------GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT  370 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~t--------------g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~  370 (489)
                      ..+|++.+.||+|+||.||+|.+..+              ...||+|.+....  .......+.+|+++++.++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADV--TKTARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCcCe
Confidence            45799999999999999999987543              2358999986542  3445567889999999999999999


Q ss_pred             eeEEEEeCCeEEEEEecCCCCCHHHHHhhCCC----------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEE
Q 042772          371 LYASFQTSTHICLITDFCPGGELFALLDKQPM----------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENIL  440 (489)
Q Consensus       371 l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~----------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NIL  440 (489)
                      +++++......++||||+++++|.+++.....          ..+++..+..++.|++.||.|||++|++|+||||+||+
T Consensus        82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil  161 (295)
T cd05097          82 LLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCL  161 (295)
T ss_pred             EEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEE
Confidence            99999999999999999999999999865321          13678889999999999999999999999999999999


Q ss_pred             EecCCcEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh--CCcccC
Q 042772          441 LQKDGHVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT--GYFTYV  488 (489)
Q Consensus       441 ld~~g~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~--G~lpY~  488 (489)
                      ++.++.+||+|||++.....                 +|+      ....+|+|++|++++++++  |..||.
T Consensus       162 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~  234 (295)
T cd05097         162 VGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYS  234 (295)
T ss_pred             EcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCc
Confidence            99999999999999864210                 111      1234688999999999987  666664

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.93  E-value=1.7e-25  Score=222.76  Aligned_cols=180  Identities=20%  Similarity=0.303  Sum_probs=150.2

Q ss_pred             CcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      +|++.+.||+|+||.||+|....     ....+++|.+....  .......+..|+.+++.+.||||+++++.+......
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   78 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENA--SSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPL   78 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCC--CHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCc
Confidence            47889999999999999998753     23578888886442  234457788999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCE
Q 042772          382 CLITDFCPGGELFALLDKQP----------------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI  439 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~----------------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NI  439 (489)
                      +++|||+++++|.+++....                      ...+++..+..++.|++.||.|||+++++||||||+||
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~ni  158 (290)
T cd05045          79 LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNV  158 (290)
T ss_pred             EEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheE
Confidence            99999999999999986421                      13478899999999999999999999999999999999


Q ss_pred             EEecCCcEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          440 LLQKDGHVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       440 Lld~~g~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |+++++.+||+|||+++....                 +|+      ....+|+|++|++++++++ |..||.
T Consensus       159 ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~  231 (290)
T cd05045         159 LVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYP  231 (290)
T ss_pred             EEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999864311                 111      1223589999999999997 999885

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.93  E-value=2e-25  Score=221.64  Aligned_cols=174  Identities=34%  Similarity=0.532  Sum_probs=143.8

Q ss_pred             ccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHH---HHHhCCCCCcceeeEEEEeCCeEEEEEecCC
Q 042772          313 PLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE---IMSLLDHPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       313 ~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~---il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      .||+|+||.||+|.+..+++.||+|.+.+...........+..|..   +++...||||+.+++++......++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            4899999999999999999999999997654332222222333433   3445679999999999999999999999999


Q ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC----------
Q 042772          390 GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS----------  459 (489)
Q Consensus       390 ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~----------  459 (489)
                      |++|..++...  ..+++..+..++.|++.||.|||+++++||||||+||++++++.+||+|||++....          
T Consensus        81 g~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~  158 (278)
T cd05606          81 GGDLHYHLSQH--GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGT  158 (278)
T ss_pred             CCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCCcCcCCC
Confidence            99999998764  458999999999999999999999999999999999999999999999999875321          


Q ss_pred             ---CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                         .+|+.       ....|+|++|++++++++|..||.
T Consensus       159 ~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~  197 (278)
T cd05606         159 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFR  197 (278)
T ss_pred             cCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCC
Confidence               11222       234599999999999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.93  E-value=2.5e-25  Score=215.62  Aligned_cols=175  Identities=25%  Similarity=0.354  Sum_probs=150.8

Q ss_pred             cccCCCCceEEEEEEEcCC---CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecC
Q 042772          312 KPLGCGDTGSVHLVELQGA---GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFC  388 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~t---g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~  388 (489)
                      +.||+|+||.||+|.....   +..|++|.+......  .....+..|+.+++.++||||+++++++.....++++|||+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   78 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASE--EERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYM   78 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccch--hHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEec
Confidence            4699999999999999866   889999999765332  24678889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhCC-------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          389 PGGELFALLDKQP-------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       389 ~ggsL~~~L~~~~-------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      ++++|.+++....       ...+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||.+......
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~  158 (262)
T cd00192          79 EGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDD  158 (262)
T ss_pred             cCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccc
Confidence            9999999998752       245899999999999999999999999999999999999999999999999998654321


Q ss_pred             -----------------Cce------eecccccchHHHHHHHHh-CCcccC
Q 042772          462 -----------------PQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       462 -----------------~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                       |+.      ...+|+|++|++++++++ |..||.
T Consensus       159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  209 (262)
T cd00192         159 DYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYP  209 (262)
T ss_pred             cccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCC
Confidence                             111      123599999999999988 688885

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.93  E-value=2.1e-25  Score=220.78  Aligned_cols=180  Identities=24%  Similarity=0.396  Sum_probs=153.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEe------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQT------  377 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~------  377 (489)
                      .+.|++.+.||.|+||.||+|.+..+++.+|+|.+...    ......+..|+.+++.+ +||||+++++++..      
T Consensus        15 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~----~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   90 (282)
T cd06636          15 AGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT----EDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGH   90 (282)
T ss_pred             hhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC----hHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCC
Confidence            35799999999999999999999999999999998653    22345677888999888 79999999998853      


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      ....|++|||+++|+|.+++.......+++..+..++.|++.||.|||++||+|+||||+||+++.++.++|+|||++..
T Consensus        91 ~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~  170 (282)
T cd06636          91 DDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  170 (282)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhh
Confidence            45789999999999999999876555688999999999999999999999999999999999999999999999999753


Q ss_pred             cC---------------CCCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          458 TS---------------CKPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~---------------~~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..               .+|+.           ...+|+|++|++++++++|..||.
T Consensus       171 ~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~  227 (282)
T cd06636         171 LDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLC  227 (282)
T ss_pred             hhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCcc
Confidence            21               11222           124699999999999999999984

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=4.2e-27  Score=236.56  Aligned_cols=185  Identities=35%  Similarity=0.631  Sum_probs=163.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~  380 (489)
                      .+...+|..+.+||.|+||+|.+|+.+++.+.||||++++......+.++-...|..+|... +-|+++.++.+|++-+.
T Consensus       345 ~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDR  424 (683)
T KOG0696|consen  345 RIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDR  424 (683)
T ss_pred             ceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhh
Confidence            45677899999999999999999999999999999999998887777888888899998877 47899999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc---
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM---  457 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~---  457 (489)
                      +|+||||+.||+|--.+.+-  +.+.|..+.+++++|+.||-+||++||++||||.+||++|.+|+|||+|||++..   
T Consensus       425 LyFVMEyvnGGDLMyhiQQ~--GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~  502 (683)
T KOG0696|consen  425 LYFVMEYVNGGDLMYHIQQV--GKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIF  502 (683)
T ss_pred             eeeEEEEecCchhhhHHHHh--cccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeeccccccccc
Confidence            99999999999999888775  3489999999999999999999999999999999999999999999999999852   


Q ss_pred             ------cCC-CCceee-----------cccccchHHHHHHHHhCCcccC
Q 042772          458 ------TSC-KPQVFY-----------HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ------~~~-~~~~~~-----------~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            +.| .|.++.           ..+-|+||+.++||+.|..||+
T Consensus       503 ~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFd  551 (683)
T KOG0696|consen  503 DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFD  551 (683)
T ss_pred             CCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCC
Confidence                  112 222222           2266889999999999999986

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.8e-25  Score=218.08  Aligned_cols=180  Identities=25%  Similarity=0.340  Sum_probs=153.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccc--ccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV--MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THIC  382 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~--~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~~  382 (489)
                      +|++.+.||+|+||.||+|.+..++..||+|.+....  .........+.+|+.++++++||||+++++++.+.  ..++
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (264)
T cd06653           3 NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLS   82 (264)
T ss_pred             ceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEE
Confidence            6899999999999999999999999999999885422  12234567888999999999999999999988764  4689


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      ++|||+++++|.+++...  ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++....   
T Consensus        83 ~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~  160 (264)
T cd06653          83 IFVEYMPGGSIKDQLKAY--GALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTIC  160 (264)
T ss_pred             EEEEeCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcccccccccccc
Confidence            999999999999999765  347899999999999999999999999999999999999999999999999886321   


Q ss_pred             ---------------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     .+|+.      ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  210 (264)
T cd06653         161 MSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWA  210 (264)
T ss_pred             ccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence                           11221      134599999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.6e-25  Score=217.36  Aligned_cols=175  Identities=36%  Similarity=0.569  Sum_probs=147.4

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHH-hCCCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS-LLDHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~-~l~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      +.||.|+||.||+|.+..+++.||+|.+.+...........+..|..++. ..+|||++++++++...+..|+||||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            57999999999999999999999999997654333334444555655544 45899999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----------  460 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----------  460 (489)
                      ++|.+++...  ..+++..+..++.|++.||.|||+.+++|+||+|+||+++.++.++|+|||++.....          
T Consensus        82 ~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y  159 (260)
T cd05611          82 GDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDY  159 (260)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccccccCCCCcCc
Confidence            9999999765  3489999999999999999999999999999999999999999999999998864321          


Q ss_pred             -CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                       .|+      ....+|+|++|.+++++++|..||.
T Consensus       160 ~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  194 (260)
T cd05611         160 LAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFH  194 (260)
T ss_pred             cChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCC
Confidence             111      1234699999999999999999985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.93  E-value=1.5e-25  Score=235.33  Aligned_cols=186  Identities=22%  Similarity=0.297  Sum_probs=153.2

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEE
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYAS  374 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~  374 (489)
                      ..+..++|.+.+.||+|+||.||+|.+.+     ++..||+|.++...  .....+.+..|+.++..+. ||||++++++
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~--~~~~~~~~~~E~~~l~~l~~H~niv~~~~~  109 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTA--RSSEKQALMSELKIMSHLGPHLNIVNLLGA  109 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCC--ChhHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            34556679999999999999999999653     45689999997542  2334557888999999997 9999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhhCCC----------------------------------------------------
Q 042772          375 FQTSTHICLITDFCPGGELFALLDKQPM----------------------------------------------------  402 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~~~~----------------------------------------------------  402 (489)
                      +.....+++||||+++|+|.+++.+...                                                    
T Consensus       110 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (401)
T cd05107         110 CTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADY  189 (401)
T ss_pred             EccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCc
Confidence            9999999999999999999999975321                                                    


Q ss_pred             --------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCC
Q 042772          403 --------------------------------------------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPEN  438 (489)
Q Consensus       403 --------------------------------------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~N  438 (489)
                                                                  ..+++..+..++.|++.||.|||+++++||||||+|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~N  269 (401)
T cd05107         190 VPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARN  269 (401)
T ss_pred             cchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcce
Confidence                                                        135677788899999999999999999999999999


Q ss_pred             EEEecCCcEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          439 ILLQKDGHVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       439 ILld~~g~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||+++++.+||+|||+++....                 .|+      ....+|+|++|++++|+++ |..||.
T Consensus       270 iLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~  343 (401)
T cd05107         270 VLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYP  343 (401)
T ss_pred             EEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999864311                 011      1123589999999999987 888884

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.5e-25  Score=217.79  Aligned_cols=180  Identities=27%  Similarity=0.394  Sum_probs=153.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCC----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTST----  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~----  379 (489)
                      .++|++.+.||+|+||.||+|.++.+++.+++|.+....    .....+..|+.+++++ .||||+++++++....    
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE----DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGN   80 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc----hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCc
Confidence            367999999999999999999999899999999987542    2345678899999998 7999999999997644    


Q ss_pred             --eEEEEEecCCCCCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          380 --HICLITDFCPGGELFALLDKQP--MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       380 --~~~lVmEy~~ggsL~~~L~~~~--~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                        .+++||||+++++|.+++....  ...+++..+..++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~  160 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVS  160 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccc
Confidence              4899999999999999987532  356899999999999999999999999999999999999999999999999987


Q ss_pred             cccC---------------CCCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTS---------------CKPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~---------------~~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....               .+|+.           ...+|+|++|.+++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  219 (275)
T cd06608         161 AQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLC  219 (275)
T ss_pred             eecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCcc
Confidence            5321               11221           234699999999999999999985

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.93  E-value=2.3e-25  Score=217.02  Aligned_cols=174  Identities=29%  Similarity=0.371  Sum_probs=148.4

Q ss_pred             cccCCCCceEEEEEEEcC-CC--cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecC
Q 042772          312 KPLGCGDTGSVHLVELQG-AG--ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFC  388 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~-tg--~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~  388 (489)
                      +.||+|++|.||+|.+.. .+  ..||+|.+......  ...+.+..|+.++++++||||+++++.+.. ...+++|||+
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~   77 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS--DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELA   77 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH--HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEec
Confidence            468999999999999865 33  36999999765432  566788899999999999999999999888 8899999999


Q ss_pred             CCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--------
Q 042772          389 PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--------  460 (489)
Q Consensus       389 ~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--------  460 (489)
                      ++++|.+++.......+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++.....        
T Consensus        78 ~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~  157 (257)
T cd05040          78 PLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVME  157 (257)
T ss_pred             CCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceecc
Confidence            999999999876434589999999999999999999999999999999999999999999999998864321        


Q ss_pred             ----------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ----------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ----------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                +|+      ....+|+|++|++++++++ |..||.
T Consensus       158 ~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~  202 (257)
T cd05040         158 EHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWA  202 (257)
T ss_pred             cCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCC
Confidence                      111      1123699999999999997 999983

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.93  E-value=3.5e-25  Score=222.75  Aligned_cols=181  Identities=24%  Similarity=0.311  Sum_probs=156.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ..|+..+.||+|+||.||+|....+++.||+|.+...........+.+.+|+.+++.++||||+++++++......|+||
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            46999999999999999999999999999999987554444555677889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||++ |+|.+++.... ..+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++....      
T Consensus        95 e~~~-g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~  172 (307)
T cd06607          95 EYCL-GSASDILEVHK-KPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFV  172 (307)
T ss_pred             HhhC-CCHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCCCCcc
Confidence            9996 68888776543 348999999999999999999999999999999999999999999999999886432      


Q ss_pred             -----CCCcee---------ecccccchHHHHHHHHhCCcccC
Q 042772          460 -----CKPQVF---------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----~~~~~~---------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           .+|+..         ..+|+|++|.+++++++|..||.
T Consensus       173 ~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~  215 (307)
T cd06607         173 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF  215 (307)
T ss_pred             CCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCC
Confidence                 123322         24699999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.93  E-value=8.6e-26  Score=223.54  Aligned_cols=179  Identities=25%  Similarity=0.324  Sum_probs=153.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||+|.++.+++.||+|.+.+.... ....+.+.+|+++++.++||||+++++++......|+|||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDD-KMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCc-chhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            688999999999999999999999999999998654332 2334567789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      |+++++|..+....  ..+++..+..++.|++.||.|||+.|++|+||+|+||++++++.++|+|||++....       
T Consensus        81 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~  158 (286)
T cd07846          81 FVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYT  158 (286)
T ss_pred             cCCccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccC
Confidence            99998888776553  338999999999999999999999999999999999999999999999999875421       


Q ss_pred             --------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 --------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .+|+.       ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~  202 (286)
T cd07846         159 DYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFP  202 (286)
T ss_pred             cccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCC
Confidence                    12222       134689999999999999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.93  E-value=2.3e-25  Score=222.70  Aligned_cols=181  Identities=28%  Similarity=0.388  Sum_probs=150.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcC----------------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcc
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQG----------------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLP  369 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~----------------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv  369 (489)
                      ++|++.+.||+|+||.||++.+..                ++..+|+|.+....  .......+..|+.+++.++||||+
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~--~~~~~~~~~~E~~~l~~l~~~~i~   82 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA--NKNARNDFLKEIKIMSRLKDPNII   82 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCcc
Confidence            579999999999999999986542                34578999886542  334456788999999999999999


Q ss_pred             eeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCC---------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEE
Q 042772          370 TLYASFQTSTHICLITDFCPGGELFALLDKQPM---------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENIL  440 (489)
Q Consensus       370 ~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~---------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NIL  440 (489)
                      ++++++......+++|||+++++|.+++.....         ..+++..+..++.|++.||.|||++|++|+||||+|||
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nil  162 (296)
T cd05095          83 RLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCL  162 (296)
T ss_pred             eEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEE
Confidence            999999999999999999999999999976421         23677889999999999999999999999999999999


Q ss_pred             EecCCcEEEEecCCccccCC-----------------CC------ceeecccccchHHHHHHHHh--CCcccC
Q 042772          441 LQKDGHVVLTDFDLSFMTSC-----------------KP------QVFYHAHVNGFYFIMYKWLT--GYFTYV  488 (489)
Q Consensus       441 ld~~g~vKL~DFGlS~~~~~-----------------~~------~~~~~~~v~s~g~~a~e~~~--G~lpY~  488 (489)
                      ++.++.++|+|||++.....                 .|      .....+|+|++|++++|+++  |..||.
T Consensus       163 i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~  235 (296)
T cd05095         163 VGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYS  235 (296)
T ss_pred             EcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCcc
Confidence            99999999999999864311                 01      11224699999999999987  667774

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.93  E-value=1.9e-25  Score=218.79  Aligned_cols=178  Identities=25%  Similarity=0.346  Sum_probs=148.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+..++ .+|+|.+.....    ..+.+.+|+.+++.++|||++++++++. ....+++
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~-~~~lK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v   78 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNGTT-KVAIKTLKPGTM----MPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIV   78 (260)
T ss_pred             hHHeeeeeeecCcCCCeEEEEEEcCCc-eEEEEEcccCCc----cHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEE
Confidence            356999999999999999999987654 589998764321    2356778999999999999999998875 4568999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+++++|.+++.......+++..+..++.|++.||.|||+.|++|+||||+||++++++.++|+|||++.....    
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~  158 (260)
T cd05069          79 TEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYT  158 (260)
T ss_pred             EEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCccc
Confidence            9999999999999876555578999999999999999999999999999999999999999999999999864321    


Q ss_pred             ------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 ------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                  +|+.      ...+|+|++|++++++++ |..||.
T Consensus       159 ~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~  205 (260)
T cd05069         159 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYP  205 (260)
T ss_pred             ccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCC
Confidence                        1111      123589999999999998 898884

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1e-26  Score=228.73  Aligned_cols=187  Identities=30%  Similarity=0.596  Sum_probs=164.1

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTS  378 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~  378 (489)
                      ...+++++|.++++||+|+|.+|.+++++.|.+.||+|++++...++....+....|..+..+. +||++|.++.+|+++
T Consensus       244 ~~~l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqte  323 (593)
T KOG0695|consen  244 SQGLGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTE  323 (593)
T ss_pred             ccccccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhccc
Confidence            3456789999999999999999999999999999999999998888888889999999998876 799999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+++|.||++||+|.-++.++.  .++++.++++..+|+.||.|||++||++||||..|||+|..|++||+|+|++..-
T Consensus       324 srlffvieyv~ggdlmfhmqrqr--klpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~  401 (593)
T KOG0695|consen  324 SRLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEG  401 (593)
T ss_pred             ceEEEEEEEecCcceeeehhhhh--cCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcC
Confidence            99999999999999988887763  4999999999999999999999999999999999999999999999999998521


Q ss_pred             ---------CC-CCceeecc-----------cccchHHHHHHHHhCCcccC
Q 042772          459 ---------SC-KPQVFYHA-----------HVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ---------~~-~~~~~~~~-----------~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .| .|.++.++           +-|.+|+.+.||+.|..||+
T Consensus       402 l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfd  452 (593)
T KOG0695|consen  402 LGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFD  452 (593)
T ss_pred             CCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcc
Confidence                     12 23333222           44677888888888888886

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.93  E-value=1.2e-25  Score=222.24  Aligned_cols=177  Identities=24%  Similarity=0.372  Sum_probs=153.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|+..+.||+|+||.||+|.+..+++.||+|.+....  .....+.+..|+.+++.++||||+++++++......|+|||
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEecccc--chHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEE
Confidence            4888899999999999999999999999999986542  23345678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+++++|.+++..   ..+++..+..++.|++.||.|||++|++|+||+|+||++++++.++|+|||++.....      
T Consensus        83 ~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~  159 (277)
T cd06642          83 YLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRN  159 (277)
T ss_pred             ccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcchhhh
Confidence            9999999999865   3478999999999999999999999999999999999999999999999999854321      


Q ss_pred             ---------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +|+.      ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~  202 (277)
T cd06642         160 TFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNS  202 (277)
T ss_pred             cccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCc
Confidence                     1111      124589999999999999999974

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.93  E-value=1.8e-25  Score=224.85  Aligned_cols=184  Identities=23%  Similarity=0.318  Sum_probs=152.1

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcC-------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQG-------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYAS  374 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~-------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  374 (489)
                      +..++|.+.+.||+|+||.||+|.+..       ++..+|+|.+....  .......+..|+.+++.+ +||||++++++
T Consensus        15 ~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   92 (307)
T cd05098          15 VPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINLLGA   92 (307)
T ss_pred             eehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC--ChHHHHHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            334679999999999999999998753       23579999987542  233456788899999999 79999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEE
Q 042772          375 FQTSTHICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENIL  440 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NIL  440 (489)
                      +......|+||||+++|+|.+++....              ...++...+..++.|++.||.|||++|++||||||+||+
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil  172 (307)
T cd05098          93 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  172 (307)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheE
Confidence            999999999999999999999997642              124788999999999999999999999999999999999


Q ss_pred             EecCCcEEEEecCCccccCC-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          441 LQKDGHVVLTDFDLSFMTSC-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       441 ld~~g~vKL~DFGlS~~~~~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ++.++.+||+|||++.....                 +|+.      ...+|+|++|+++++|++ |..||.
T Consensus       173 l~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~  244 (307)
T cd05098         173 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  244 (307)
T ss_pred             EcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999853210                 1111      123588999999999987 888874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.93  E-value=2.5e-25  Score=219.99  Aligned_cols=179  Identities=23%  Similarity=0.389  Sum_probs=154.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||+|.+..+|..||+|.+..... .......+..|+.+++.++||||+++++++......++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRL-EGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccc-cchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEec
Confidence            48899999999999999999999999999999876532 23345678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+ +++|.+++.... ..+++..++.++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.....      
T Consensus        80 ~~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~  157 (286)
T cd07832          80 YM-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLY  157 (286)
T ss_pred             cc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCcc
Confidence            99 999999987654 4589999999999999999999999999999999999999999999999998864321      


Q ss_pred             ----------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|+.       ...+|+|++|.+++++++|..+|.
T Consensus       158 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~  202 (286)
T cd07832         158 SHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFP  202 (286)
T ss_pred             ccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcC
Confidence                      1222       234689999999999999977763

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.93  E-value=1.8e-25  Score=225.44  Aligned_cols=172  Identities=22%  Similarity=0.338  Sum_probs=140.1

Q ss_pred             ccccCCCCceEEEEEEEc--CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--CCeEEEEEe
Q 042772          311 IKPLGCGDTGSVHLVELQ--GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--STHICLITD  386 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~--~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~~~lVmE  386 (489)
                      .+.||+|+||.||+|.++  .+++.||+|.+.....     ...+.+|+.+++.++||||+++++++..  ...+|++||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e   80 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI-----SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFD   80 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC-----cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEe
Confidence            468999999999999976  4678999999865421     2346679999999999999999998854  457899999


Q ss_pred             cCCCCCHHHHHhhC-------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE----ecCCcEEEEecCCc
Q 042772          387 FCPGGELFALLDKQ-------PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL----QKDGHVVLTDFDLS  455 (489)
Q Consensus       387 y~~ggsL~~~L~~~-------~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl----d~~g~vKL~DFGlS  455 (489)
                      |+ +++|.+++...       ....+++..+..++.||+.||.|||++||+||||||+|||+    +.++.+||+|||+|
T Consensus        81 ~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07868          81 YA-EHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             cc-CCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCce
Confidence            99 46998887642       12248999999999999999999999999999999999999    45678999999998


Q ss_pred             cccC------------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTS------------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~------------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +...                  .+|+.       ....|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~  217 (317)
T cd07868         160 RLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             eccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCcc
Confidence            6432                  11222       123589999999999999999884

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=6.4e-27  Score=237.53  Aligned_cols=178  Identities=25%  Similarity=0.387  Sum_probs=157.7

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|+..+.||+|+||.||+|.+..+++.||+|+++...  .......+..|+.+|..++++||.++|++|.....++++||
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~--~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMe   91 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEE--AEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIME   91 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhh--cchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHH
Confidence            5888899999999999999999999999999998653  45567788889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      ||.||++.++|+..  ..+.+..+..++.+++.|+.|||.++.+|||||+.|||+..+|.+||+|||.+....       
T Consensus        92 y~~gGsv~~lL~~~--~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~  169 (467)
T KOG0201|consen   92 YCGGGSVLDLLKSG--NILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRK  169 (467)
T ss_pred             HhcCcchhhhhccC--CCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhhccc
Confidence            99999999999875  346899999999999999999999999999999999999999999999999985322       


Q ss_pred             --------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 --------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .+|++      -..+|+|++|.+++|++.|..||.
T Consensus       170 tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s  212 (467)
T KOG0201|consen  170 TFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHS  212 (467)
T ss_pred             cccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCc
Confidence                    12222      234588999999999999999984

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.93  E-value=7.4e-27  Score=249.65  Aligned_cols=184  Identities=23%  Similarity=0.318  Sum_probs=162.3

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCC---cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAG---ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg---~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      .+++.....+.++||.|.||.|++|.++..|   ..||||.++...  .......|+.|..||.+++||||++|.|+...
T Consensus       624 kEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy--tekqrrdFL~EAsIMGQFdHPNIIrLEGVVTk  701 (996)
T KOG0196|consen  624 KEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY--TEKQRRDFLSEASIMGQFDHPNIIRLEGVVTK  701 (996)
T ss_pred             hhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCc--cHHHHhhhhhhhhhcccCCCCcEEEEEEEEec
Confidence            3677778899999999999999999998766   489999997653  45566789999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      ...++||+|||++|+|.++|..+.++ |+.-+...++..|+.||.||-++++|||||..+|||++.+..+|++|||+|+.
T Consensus       702 s~PvMIiTEyMENGsLDsFLR~~DGq-ftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRv  780 (996)
T KOG0196|consen  702 SKPVMIITEYMENGSLDSFLRQNDGQ-FTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  780 (996)
T ss_pred             CceeEEEhhhhhCCcHHHHHhhcCCc-eEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceee
Confidence            99999999999999999999998755 88999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCce------------e------------ecccccchHHHHHHH-HhCCccc
Q 042772          458 TSCKPQV------------F------------YHAHVNGFYFIMYKW-LTGYFTY  487 (489)
Q Consensus       458 ~~~~~~~------------~------------~~~~v~s~g~~a~e~-~~G~lpY  487 (489)
                      +...++.            |            ..+|||+||..++|. +.|.-||
T Consensus       781 ledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPY  835 (996)
T KOG0196|consen  781 LEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPY  835 (996)
T ss_pred             cccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcc
Confidence            7654422            1            344888888888874 6888887

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.93  E-value=2.4e-25  Score=217.76  Aligned_cols=180  Identities=26%  Similarity=0.380  Sum_probs=151.2

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++.+.||+|+||.||+|.... +..+|+|.+.....    ..+.+.+|+.++++++|||++++++++. ....+
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~-~~~~~~k~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~   76 (260)
T cd05070           3 IPRESLQLIKKLGNGQFGEVWMGTWNG-NTKVAVKTLKPGTM----SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIY   76 (260)
T ss_pred             CchHHhhhhheeccccCceEEEEEecC-CceeEEEEecCCCC----CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcE
Confidence            344679999999999999999998764 56799999875432    1346788999999999999999999875 45689


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      ++|||+++++|.+++.......+++..+..++.|++.||.|||++|++||||||+||++++++.++|+|||++.....  
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05070          77 IVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCcc
Confidence            999999999999999876555689999999999999999999999999999999999999999999999999864321  


Q ss_pred             --------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 --------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 --------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                    +|+.      ...+|+|++|.+++++++ |..||.
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~  205 (260)
T cd05070         157 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYP  205 (260)
T ss_pred             cccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCC
Confidence                          1211      124689999999999998 888874

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=2.9e-25  Score=220.53  Aligned_cols=177  Identities=26%  Similarity=0.383  Sum_probs=148.6

Q ss_pred             CcccccccCCCCceEEEEEEE----cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--Ce
Q 042772          307 HFKPIKPLGCGDTGSVHLVEL----QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--TH  380 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~----~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~  380 (489)
                      .|++++.||+|+||.||+|..    ..++..||+|.++...  .......+.+|+.+++.+.||||+++++++...  ..
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG   82 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccc--cHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCc
Confidence            478999999999999999985    4568899999986442  334456788999999999999999999988775  57


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      .++||||++|++|.+++.+.. ..+++..+..++.|++.||.|||++|++||||||+||+++.++.++|+|||+++....
T Consensus        83 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05079          83 IKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  161 (284)
T ss_pred             eEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCcccccccc
Confidence            899999999999999997653 3478999999999999999999999999999999999999999999999999864321


Q ss_pred             ------------------CCc------eeecccccchHHHHHHHHhCCcc
Q 042772          461 ------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFT  486 (489)
Q Consensus       461 ------------------~~~------~~~~~~v~s~g~~a~e~~~G~lp  486 (489)
                                        +|+      ....+|+|++|++++++++|+.|
T Consensus       162 ~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~  211 (284)
T cd05079         162 DKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDS  211 (284)
T ss_pred             CccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCC
Confidence                              111      11346899999999999987654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.93  E-value=2.4e-25  Score=223.47  Aligned_cols=184  Identities=22%  Similarity=0.309  Sum_probs=151.9

Q ss_pred             ccccCcccccccCCCCceEEEEEEEc-------CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQ-------GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYAS  374 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~-------~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  374 (489)
                      +...+|++.+.||+|+||.||+|.+.       ..+..||+|.+...  ........+..|+.+++.+ +||||++++++
T Consensus        12 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~--~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~   89 (304)
T cd05101          12 FSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDD--ATEKDLSDLVSEMEMMKMIGKHKNIINLLGA   89 (304)
T ss_pred             ccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccc--cchHHHHHHHHHHHHHHhhccCCCchheeEE
Confidence            44568999999999999999999753       23458999988643  2234457788999999999 89999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEE
Q 042772          375 FQTSTHICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENIL  440 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NIL  440 (489)
                      +......+++|||+++|+|.+++....              ...++...+..++.|++.||.|||++|++||||||+||+
T Consensus        90 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nil  169 (304)
T cd05101          90 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVL  169 (304)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEE
Confidence            999999999999999999999997642              134678889999999999999999999999999999999


Q ss_pred             EecCCcEEEEecCCccccCC-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          441 LQKDGHVVLTDFDLSFMTSC-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       441 ld~~g~vKL~DFGlS~~~~~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ++.++.+||+|||+++....                 +|+.      ...+|+|++|++++++++ |..||.
T Consensus       170 i~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  241 (304)
T cd05101         170 VTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP  241 (304)
T ss_pred             EcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999863320                 1221      124688999999999987 777764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.93  E-value=2.1e-25  Score=217.44  Aligned_cols=177  Identities=23%  Similarity=0.357  Sum_probs=149.6

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      .+++|++.+.||+|+||.||++..  +++.||+|.+....     ....+.+|+.+++.++||||+++++++... ..++
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~--~~~~~~iK~~~~~~-----~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~   75 (254)
T cd05083           4 NLQKLTLGEIIGEGEFGAVLQGEY--TGQKVAVKNIKCDV-----TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYI   75 (254)
T ss_pred             cHHHceeeeeeccCCCCceEeccc--CCCceEEEeecCcc-----hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEE
Confidence            346799999999999999999874  57889999886431     235677899999999999999999988665 4799


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      +|||+++++|.+++.......+++..+..++.|++.||.|||+.|++||||||+||+++.++.+||+|||++.....   
T Consensus        76 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~  155 (254)
T cd05083          76 VMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVD  155 (254)
T ss_pred             EEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceeccccCC
Confidence            99999999999999876555689999999999999999999999999999999999999999999999998864221   


Q ss_pred             ---------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ---------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ---------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                               +|+      .....|+|++|++++++++ |..||.
T Consensus       156 ~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~  199 (254)
T cd05083         156 NSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYP  199 (254)
T ss_pred             CCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCc
Confidence                     111      1124589999999999986 999885

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.93  E-value=4.1e-25  Score=214.55  Aligned_cols=180  Identities=26%  Similarity=0.390  Sum_probs=155.2

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccc--cchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM--LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +|+..+.||+|+||+||+|....++..|++|.+.....  ........+..|+.+++.++||||+++++++......+++
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            47788999999999999999998899999999865432  1234567788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+++++|.+++...  ..+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.+||+|||++.....    
T Consensus        81 ~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~  158 (258)
T cd06632          81 LELVPGGSLAKLLKKY--GSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFA  158 (258)
T ss_pred             EEecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccccc
Confidence            9999999999999775  3478999999999999999999999999999999999999999999999998753221    


Q ss_pred             ----------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .|+       .....|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~  203 (258)
T cd06632         159 KSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWS  203 (258)
T ss_pred             cccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcc
Confidence                      111       2234689999999999999999985

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.93  E-value=3.2e-25  Score=223.96  Aligned_cols=184  Identities=24%  Similarity=0.310  Sum_probs=152.7

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcC-------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQG-------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYAS  374 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~-------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  374 (489)
                      +..++|.+.+.||+|+||.||+|....       ....+|+|.+....  .......+..|+.+++.+ +||||++++++
T Consensus         9 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~   86 (314)
T cd05099           9 FPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNA--TDKDLADLISEMELMKLIGKHKNIINLLGV   86 (314)
T ss_pred             ccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCC--ChHHHHHHHHHHHHHHhccCCCCeeeEEEE
Confidence            344679999999999999999998642       34579999886532  234566788899999999 69999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEE
Q 042772          375 FQTSTHICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENIL  440 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NIL  440 (489)
                      +.....+|++|||+++|+|.+++....              ...+++..+..++.|++.||.|||++|++||||||+|||
T Consensus        87 ~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil  166 (314)
T cd05099          87 CTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVL  166 (314)
T ss_pred             EccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEE
Confidence            999899999999999999999997632              234788899999999999999999999999999999999


Q ss_pred             EecCCcEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          441 LQKDGHVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       441 ld~~g~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ++.++.+||+|||+++....                 +|+      ....+|+|++|++++++++ |..||.
T Consensus       167 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~  238 (314)
T cd05099         167 VTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYP  238 (314)
T ss_pred             EcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCC
Confidence            99999999999999863321                 111      1224589999999999988 888874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.93  E-value=1.8e-25  Score=224.44  Aligned_cols=181  Identities=21%  Similarity=0.301  Sum_probs=151.6

Q ss_pred             CcccccccCCCCceEEEEEEEcC--CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQG--AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THIC  382 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~~  382 (489)
                      +|++.+.||+|+||.||+|.+..  +++.||+|.+.............+..|+.+++.++||||+++++++...  ..++
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            48889999999999999999988  8999999999764322333445677899999999999999999999988  7899


Q ss_pred             EEEecCCCCCHHHHHhhCC---CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec----CCcEEEEecCCc
Q 042772          383 LITDFCPGGELFALLDKQP---MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK----DGHVVLTDFDLS  455 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~---~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~----~g~vKL~DFGlS  455 (489)
                      +||||++ ++|.+++....   ...+++..+..++.|++.||.|||+++|+||||||+||+++.    ++.+||+|||++
T Consensus        81 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~  159 (316)
T cd07842          81 LLFDYAE-HDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLA  159 (316)
T ss_pred             EEEeCCC-cCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence            9999996 57887775431   235899999999999999999999999999999999999999    999999999998


Q ss_pred             cccCC------------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSC------------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~------------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .....                  +|+.       ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~  217 (316)
T cd07842         160 RLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFK  217 (316)
T ss_pred             cccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCc
Confidence            64321                  1221       234589999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.93  E-value=4.2e-25  Score=214.54  Aligned_cols=181  Identities=24%  Similarity=0.429  Sum_probs=156.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|+..+.||+|+||.||+|....+++.+|+|.+..... .......+..|+.+++.++||||+++++.+......++|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQM-TKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVME   79 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEecccc-ccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEe
Confidence            48899999999999999999999999999999976543 23446778899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-CcEEEEecCCccccCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-GHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-g~vKL~DFGlS~~~~~-----  460 (489)
                      |+++++|.+++.......+++..+..++.|++.+|.|||++|++|+||||+||+++.+ +.+||+|||++.....     
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~  159 (256)
T cd08220          80 YAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAY  159 (256)
T ss_pred             cCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcccc
Confidence            9999999999987655568999999999999999999999999999999999999855 4689999999864321     


Q ss_pred             ---------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +|+.      ....|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~  202 (256)
T cd08220         160 TVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFE  202 (256)
T ss_pred             ccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcc
Confidence                     1221      234689999999999999999885

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.93  E-value=3.8e-25  Score=216.88  Aligned_cols=172  Identities=22%  Similarity=0.343  Sum_probs=143.5

Q ss_pred             ccCCCCceEEEEEEEc--CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          313 PLGCGDTGSVHLVELQ--GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       313 ~LG~G~fG~Vy~a~~~--~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      .||+|+||.||+|.+.  ..+..||+|.+...  ......+.+.+|+.+++.++||||+++++++.. ...++||||+++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~--~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~   78 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNE--NEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASG   78 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccc--cChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCC
Confidence            4899999999999875  44567999988654  234445678899999999999999999998764 578999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----------  460 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----------  460 (489)
                      ++|.+++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||++.....          
T Consensus        79 ~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  157 (257)
T cd05115          79 GPLNKFLSGKK-DEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSA  157 (257)
T ss_pred             CCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCC
Confidence            99999987543 3589999999999999999999999999999999999999999999999999863221          


Q ss_pred             --------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 --------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 --------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                              +|+.      ...+|+|++|++++++++ |..||.
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  200 (257)
T cd05115         158 GKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYK  200 (257)
T ss_pred             CCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcC
Confidence                    1111      124599999999999885 999984

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.93  E-value=4.2e-25  Score=216.29  Aligned_cols=180  Identities=24%  Similarity=0.323  Sum_probs=152.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++.+.||+|+||.||++.+.. +..+|+|.+...    ....+.+.+|+.+++.++|+||+++++++.. ...+
T Consensus         3 ~~~~~~~~~~~lg~g~~~~vy~~~~~~-~~~~~iK~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~   76 (260)
T cd05073           3 IPRESLKLEKKLGAGQFGEVWMATYNK-HTKVAVKTMKPG----SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIY   76 (260)
T ss_pred             ccccceeEEeEecCccceEEEEEEecC-CccEEEEecCCC----hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeE
Confidence            345689999999999999999998664 556999988643    2234678889999999999999999998877 7789


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      ++|||+++++|.+++.......++...+..++.|++.||.|||+.|++|+||||+||+++.++.+||+|||++.....  
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  156 (260)
T cd05073          77 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE  156 (260)
T ss_pred             EEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCC
Confidence            999999999999999876555578889999999999999999999999999999999999999999999998754321  


Q ss_pred             --------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 --------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 --------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                    +|+.      ...+|+|++|++++++++ |..||.
T Consensus       157 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~  205 (260)
T cd05073         157 YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP  205 (260)
T ss_pred             cccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCC
Confidence                          1111      124589999999999998 999984

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=3.4e-25  Score=218.51  Aligned_cols=177  Identities=25%  Similarity=0.426  Sum_probs=153.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC---CCCcceeeEEEEeCCeEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD---HPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~---HpnIv~l~~~~~~~~~~~l  383 (489)
                      .|+..+.||+|+||.||+|.+..+++.||+|.+....  .......+.+|+.+++.+.   |||++++++++......|+
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~l   79 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDT--PDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWI   79 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCC--CchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEE
Confidence            4888999999999999999999999999999986542  3344567788999999886   9999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      +|||+++++|.+++...   .+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++.....   
T Consensus        80 v~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06917          80 IMEYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSS  156 (277)
T ss_pred             EEecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCcc
Confidence            99999999999998653   488999999999999999999999999999999999999999999999998854321   


Q ss_pred             ------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+.       ...+|+|++|++++++++|..||.
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~  203 (277)
T cd06917         157 KRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYS  203 (277)
T ss_pred             ccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCC
Confidence                        1221       234689999999999999999985

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.93  E-value=3.2e-25  Score=219.72  Aligned_cols=181  Identities=25%  Similarity=0.342  Sum_probs=151.4

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEE-----e
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQ-----T  377 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~-----~  377 (489)
                      ..++|++.+.||+|+||.||+|.+..+++.+|+|.+....    .....+..|+.+++.+ +||||+++++++.     .
T Consensus        16 ~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~   91 (286)
T cd06638          16 PSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH----DIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKN   91 (286)
T ss_pred             cccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc----chHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCC
Confidence            4468999999999999999999999999999999876432    1224567799999998 7999999999874     3


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          378 STHICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      ....++||||+++++|.+++...  ....+++..+..++.|++.||.|||+++++||||||+||+++.++.+||+|||++
T Consensus        92 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~  171 (286)
T cd06638          92 GDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVS  171 (286)
T ss_pred             CCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCce
Confidence            45799999999999999987642  2345789999999999999999999999999999999999999999999999998


Q ss_pred             cccCC---------------CCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSC---------------KPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~---------------~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .....               +|+.           ...+|+|++|++++++++|..||.
T Consensus       172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~  230 (286)
T cd06638         172 AQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLA  230 (286)
T ss_pred             eecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCC
Confidence            53221               1221           234699999999999999999874

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.93  E-value=1.2e-25  Score=220.85  Aligned_cols=181  Identities=35%  Similarity=0.575  Sum_probs=158.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ++|.+.+.||+|+||.||+|....+++.||+|++.+...........+..|..+++++. ||||+++++++......+++
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            36899999999999999999999999999999998755444555677888999999998 99999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCCC--
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKP--  462 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~~--  462 (489)
                      |||+++++|.+++....  .+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++.......  
T Consensus        81 ~e~~~~~~L~~~l~~~~--~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~  158 (280)
T cd05581          81 LEYAPNGELLQYIRKYG--SLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSP  158 (280)
T ss_pred             EcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCcccc
Confidence            99999999999998763  58999999999999999999999999999999999999999999999999986433211  


Q ss_pred             ---------------------------------c------eeecccccchHHHHHHHHhCCcccC
Q 042772          463 ---------------------------------Q------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       463 ---------------------------------~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                                       +      .....|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  223 (280)
T cd05581         159 ESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFR  223 (280)
T ss_pred             ccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCC
Confidence                                             1      1123588999999999999999985

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.93  E-value=2.4e-25  Score=221.84  Aligned_cols=181  Identities=20%  Similarity=0.274  Sum_probs=153.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THIC  382 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~~  382 (489)
                      .++|++.+.||.|+||.||+|.++.+++.+|+|.++..... ......+.+|+.+++.++||||+++++++...  ...|
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEK-EGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeecccc-ccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            35799999999999999999999999999999999755332 22334567899999999999999999998877  8999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      +||||++ ++|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++.....  
T Consensus        83 lv~e~~~-~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  160 (293)
T cd07843          83 MVMEYVE-HDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPL  160 (293)
T ss_pred             EEehhcC-cCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCc
Confidence            9999996 59999987653 3589999999999999999999999999999999999999999999999998864321  


Q ss_pred             -------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+.       ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~  208 (293)
T cd07843         161 KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFP  208 (293)
T ss_pred             cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCC
Confidence                         1221       134589999999999999998874

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>PTZ00284 protein kinase; Provisional

Probab=99.93  E-value=2.4e-25  Score=238.01  Aligned_cols=179  Identities=25%  Similarity=0.346  Sum_probs=145.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC------CCCcceeeEEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD------HPFLPTLYASFQ  376 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~------HpnIv~l~~~~~  376 (489)
                      ...++|++++.||+|+||+||+|.+..+++.||+|+++...    ........|+.+++.+.      |++++.++++|.
T Consensus       126 ~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~  201 (467)
T PTZ00284        126 VSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP----KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQ  201 (467)
T ss_pred             cCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch----hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEE
Confidence            34578999999999999999999999999999999996431    22234455777776664      456889998887


Q ss_pred             eC-CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCC---------
Q 042772          377 TS-THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDG---------  445 (489)
Q Consensus       377 ~~-~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g---------  445 (489)
                      .. .++|+|||++ +++|.+++.+.  ..+++..+..++.||+.||.|||+ .||+||||||+|||++.++         
T Consensus       202 ~~~~~~~iv~~~~-g~~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~  278 (467)
T PTZ00284        202 NETGHMCIVMPKY-GPCLLDWIMKH--GPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNR  278 (467)
T ss_pred             cCCceEEEEEecc-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCccccccccc
Confidence            65 5799999998 78999998765  348999999999999999999998 5999999999999998765         


Q ss_pred             -------cEEEEecCCccccC------------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          446 -------HVVLTDFDLSFMTS------------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       446 -------~vKL~DFGlS~~~~------------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             .+||+|||++....            .+|+.      ....|+|++|++++|+++|..||.
T Consensus       279 ~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~  346 (467)
T PTZ00284        279 ALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYD  346 (467)
T ss_pred             ccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                   49999999875321            12222      223499999999999999999995

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=5e-25  Score=219.32  Aligned_cols=181  Identities=28%  Similarity=0.419  Sum_probs=153.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THICL  383 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~~l  383 (489)
                      ++|...+.||.|++|.||+|.+..+++.+|+|.+....  .......+.+|+++++.++||||++++++|...  ..+|+
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   78 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDP--NPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGI   78 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCC--chHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEE
Confidence            36889999999999999999999999999999987542  234567788999999999999999999988653  47899


Q ss_pred             EEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          384 ITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ||||+++++|.+++...  ....+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++..... 
T Consensus        79 v~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~  158 (287)
T cd06621          79 AMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNS  158 (287)
T ss_pred             EEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccccccccc
Confidence            99999999999887642  234478999999999999999999999999999999999999999999999999753221 


Q ss_pred             ------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+.      ....|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  204 (287)
T cd06621         159 LAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFP  204 (287)
T ss_pred             ccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                        1211      124589999999999999999985

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.93  E-value=1.6e-25  Score=221.57  Aligned_cols=180  Identities=22%  Similarity=0.372  Sum_probs=154.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|+.++.||.|++|.||+|.+..+++.||+|.+..... .......+..|++++++++||||+++++++......++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   79 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEcccccc-ccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEee
Confidence            48899999999999999999999999999998865432 22234567889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      |+. ++|.+++.......+++..+..++.|++.||.|||++|++|+||+|+||+++.++.+||+|||++....       
T Consensus        80 ~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~  158 (284)
T cd07860          80 FLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYT  158 (284)
T ss_pred             ccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCccccc
Confidence            995 689999887655668999999999999999999999999999999999999999999999999875321       


Q ss_pred             --------CCCcee-------ecccccchHHHHHHHHhCCcccC
Q 042772          460 --------CKPQVF-------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~~~~~~-------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .+|+..       ..+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~  202 (284)
T cd07860         159 HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFP  202 (284)
T ss_pred             cccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                    123322       23589999999999999999884

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.93  E-value=3.4e-27  Score=229.37  Aligned_cols=176  Identities=24%  Similarity=0.387  Sum_probs=156.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      -|.+++.||+|+||.||+|.++.+|+.+|||.+...     ..++.+..|+.|+++++.|++|++|++|.....+|+|||
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~-----sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVME  108 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD-----TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVME  108 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc-----chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehh
Confidence            488999999999999999999999999999988643     457889999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      ||.-|+..+.+..+ ++++++.++..++...+.||+|||...-+|||||..|||++.+|+.||+|||.|-.+.       
T Consensus       109 YCGAGSiSDI~R~R-~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRN  187 (502)
T KOG0574|consen  109 YCGAGSISDIMRAR-RKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRN  187 (502)
T ss_pred             hcCCCcHHHHHHHh-cCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhC
Confidence            99999999998765 4679999999999999999999999999999999999999999999999999985433       


Q ss_pred             --CCCceee------------cccccchHHHHHHHHhCCcccC
Q 042772          460 --CKPQVFY------------HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --~~~~~~~------------~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                        .....|.            .+++|++|.++.||+-|..||.
T Consensus       188 TVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYs  230 (502)
T KOG0574|consen  188 TVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYS  230 (502)
T ss_pred             ccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcc
Confidence              1222332            3478899999999999999985

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.93  E-value=4.8e-26  Score=216.68  Aligned_cols=185  Identities=22%  Similarity=0.284  Sum_probs=159.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC---
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS---  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~---  378 (489)
                      -+...+|++.+.||+|+|+-||+++...+++.||+|.+...   +........+|++..++++||||++++++...+   
T Consensus        17 ~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~---~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D   93 (302)
T KOG2345|consen   17 IINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCH---SQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKD   93 (302)
T ss_pred             EEcCceEEEeeeecCCCceeeeeecccCcccchhhheeecc---chHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhcc
Confidence            45668999999999999999999999999999999999765   345677888999999999999999999876443   


Q ss_pred             --CeEEEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEecCCcEEEEec
Q 042772          379 --THICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQKDGHVVLTDF  452 (489)
Q Consensus       379 --~~~~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld~~g~vKL~DF  452 (489)
                        ..+||+++|...|+|.+.+...  .+..+++.+++.|+.+||+||++||...  +.||||||.|||+.+.+.++|.||
T Consensus        94 ~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~  173 (302)
T KOG2345|consen   94 GKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDL  173 (302)
T ss_pred             CceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEec
Confidence              3599999999999999998764  3335899999999999999999999998  999999999999999999999999


Q ss_pred             CCccccC------------------------CCCc---------eeecccccchHHHHHHHHhCCcccCC
Q 042772          453 DLSFMTS------------------------CKPQ---------VFYHAHVNGFYFIMYKWLTGYFTYVP  489 (489)
Q Consensus       453 GlS~~~~------------------------~~~~---------~~~~~~v~s~g~~a~e~~~G~lpY~~  489 (489)
                      |.++...                        -+|+         .....|+|++|+++|.|+.|.-||++
T Consensus       174 GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~  243 (302)
T KOG2345|consen  174 GSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFER  243 (302)
T ss_pred             cCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchH
Confidence            9985322                        1122         22455999999999999999999973

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.93  E-value=2.6e-25  Score=219.34  Aligned_cols=180  Identities=26%  Similarity=0.342  Sum_probs=152.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcC----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--CC
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQG----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--ST  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~  379 (489)
                      .+|++.+.||+|+||.||+|.+..    ++..+|+|.+......  .....+..|+.+++.+.||||+++++++..  ..
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~   81 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE--QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGR   81 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch--HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCC
Confidence            468899999999999999999653    4789999999755322  356778899999999999999999998877  55


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..+++|||+++++|.+++..... .+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++....
T Consensus        82 ~~~lv~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05038          82 SLRLIMEYLPSGSLRDYLQRHRD-QINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLP  160 (284)
T ss_pred             ceEEEEecCCCCCHHHHHHhCcc-ccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence            79999999999999999987643 48999999999999999999999999999999999999999999999999986543


Q ss_pred             C------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                  .|+      ....+|+|++|++++++++|..|+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~  213 (284)
T cd05038         161 EDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQ  213 (284)
T ss_pred             cCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcc
Confidence            1                  111      1124588999999999999988763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=4.7e-25  Score=215.37  Aligned_cols=172  Identities=23%  Similarity=0.338  Sum_probs=145.7

Q ss_pred             cccCCCCceEEEEEEEcCCC---cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecC
Q 042772          312 KPLGCGDTGSVHLVELQGAG---ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFC  388 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg---~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~  388 (489)
                      +.||+|+||.||+|.+..++   ..+|+|.+......  .....+..|+.+++.++||||+++++++. ....+++|||+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~   77 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA--AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELA   77 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeC
Confidence            46999999999999876554   78999998765432  34567888999999999999999999876 44689999999


Q ss_pred             CCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--------
Q 042772          389 PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--------  460 (489)
Q Consensus       389 ~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--------  460 (489)
                      ++|+|.+++....  .+++..+..++.|++.||.|||.++++|+||||+|||++.++.+||+|||+++....        
T Consensus        78 ~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~  155 (257)
T cd05060          78 PLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRAT  155 (257)
T ss_pred             CCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccc
Confidence            9999999998764  489999999999999999999999999999999999999999999999999863311        


Q ss_pred             ----------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 ----------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ----------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                +|+.      ...+|+|++|++++++++ |..||.
T Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~  200 (257)
T cd05060         156 TAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYG  200 (257)
T ss_pred             cCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcc
Confidence                      1111      124699999999999996 999985

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.93  E-value=4.4e-25  Score=217.11  Aligned_cols=180  Identities=26%  Similarity=0.399  Sum_probs=153.7

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-------chHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-------NRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-------~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      +|...+.||.|+||.||+|....+++.+|+|.+......       .....+.+..|+.+++.++||||+++++++....
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            578889999999999999999989999999988642211       1123456778999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++||||+++++|.+++...  ..+++..+..++.|++.||.|||+++++|+||+|+||+++.++.++|+|||++....
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~  159 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSD  159 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccccccc
Confidence            999999999999999999876  458999999999999999999999999999999999999999999999999886321


Q ss_pred             C-----------------CCc--------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C-----------------KPQ--------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~-----------------~~~--------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                 .|+        ....+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~  213 (272)
T cd06629         160 DIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWS  213 (272)
T ss_pred             ccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCc
Confidence            0                 121        1233589999999999999999984

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.93  E-value=3.3e-26  Score=222.64  Aligned_cols=174  Identities=28%  Similarity=0.470  Sum_probs=146.0

Q ss_pred             cCcccc-cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHH-HHhCCCCCcceeeEEEEe----CC
Q 042772          306 HHFKPI-KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-MSLLDHPFLPTLYASFQT----ST  379 (489)
Q Consensus       306 ~~y~~~-~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~i-l~~l~HpnIv~l~~~~~~----~~  379 (489)
                      ++|.+. ++||-|-.|.|..|.++.||+.+|+|++..+        ...++|+++ +..-.|||||.++++|..    ..
T Consensus        61 edY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds--------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rk  132 (400)
T KOG0604|consen   61 EDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS--------PKARREVELHWMASGHPHIVSIIDVYENSYQGRK  132 (400)
T ss_pred             hhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC--------HHHHhHhhhhhhhcCCCceEEeehhhhhhccCce
Confidence            455554 6799999999999999999999999988533        345567776 334479999999998864    35


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEEEEecCCcc
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLSF  456 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vKL~DFGlS~  456 (489)
                      .+.+|||.++||+|++.+..+....++|.++..|+.||+.|+.|||+.+|.||||||+|+|...   |..+||+|||+|.
T Consensus       133 cLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK  212 (400)
T KOG0604|consen  133 CLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAK  212 (400)
T ss_pred             eeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEeccccccc
Confidence            6889999999999999999998888999999999999999999999999999999999999964   4579999999997


Q ss_pred             ccC--------C------CCcee------ecccccchHHHHHHHHhCCccc
Q 042772          457 MTS--------C------KPQVF------YHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       457 ~~~--------~------~~~~~------~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      ...        |      +|++.      ...+.|++|+++|+++||..||
T Consensus       213 ~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPF  263 (400)
T KOG0604|consen  213 ETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF  263 (400)
T ss_pred             ccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcc
Confidence            544        1      12221      2338899999999999999998

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.93  E-value=4.5e-25  Score=220.02  Aligned_cols=181  Identities=18%  Similarity=0.267  Sum_probs=152.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||.|++|.||+|.++.+++.||+|.+..... .......+..|+.+++.++||||+++++++......|+||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   80 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQE-DEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVF   80 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccc-cccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEE
Confidence            579999999999999999999999999999998865432 2233456778999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-CCcEEEEecCCccccC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-~g~vKL~DFGlS~~~~-----  459 (489)
                      ||++ ++|.+++.......+++..+..++.||+.||.|||+++++|+||+|+||+++. ++.+||+|||++....     
T Consensus        81 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~  159 (294)
T PLN00009         81 EYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRT  159 (294)
T ss_pred             eccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCccc
Confidence            9995 68998887665545688899999999999999999999999999999999985 5679999999885321     


Q ss_pred             ----------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+|+.       ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~  205 (294)
T PLN00009        160 FTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFP  205 (294)
T ss_pred             cccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                      11221       124588999999999999999984

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.93  E-value=3.9e-25  Score=219.37  Aligned_cols=181  Identities=20%  Similarity=0.292  Sum_probs=152.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ..+|...+.||+|+||.||++...     .++..+|+|.+...   .......+.+|+++++.++||||+++++++....
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (280)
T cd05092           4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTVLQHQHIVRFYGVCTEGR   80 (280)
T ss_pred             hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcC---CHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCC
Confidence            357888999999999999999753     34678999987643   3445567889999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCC-------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc
Q 042772          380 HICLITDFCPGGELFALLDKQPM-------------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH  446 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~-------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~  446 (489)
                      ..+++|||+++++|.+++.....             ..+++..+..++.|++.||.|||++|++||||||+|||+++++.
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~  160 (280)
T cd05092          81 PLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLV  160 (280)
T ss_pred             ceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCC
Confidence            99999999999999999976421             24789999999999999999999999999999999999999999


Q ss_pred             EEEEecCCccccC-----------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          447 VVLTDFDLSFMTS-----------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       447 vKL~DFGlS~~~~-----------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +||+|||++....                 .+|+.      ...+|+|++|+++++|++ |..||.
T Consensus       161 ~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  226 (280)
T cd05092         161 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWY  226 (280)
T ss_pred             EEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCc
Confidence            9999999985321                 11211      123599999999999987 999884

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.93  E-value=3.5e-25  Score=220.37  Aligned_cols=180  Identities=41%  Similarity=0.664  Sum_probs=152.8

Q ss_pred             CcccccccCCCCceEEEEEEEc---CCCcEEEEEEeeccccc-chHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVML-NRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~  381 (489)
                      +|++.+.||.|+||.||+|...   .+|..||+|.+...... .......+..|+.+++.+ +||||+.+++++......
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            4788999999999999999875   47899999998754322 223345677899999999 599999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+||||+++++|.+++...  ..+++..+..++.|++.||.|||++|++||||+|+|||++.++.+||+|||++..... 
T Consensus        81 ~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  158 (290)
T cd05613          81 HLILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHED  158 (290)
T ss_pred             EEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccc
Confidence            9999999999999999875  3488999999999999999999999999999999999999999999999998864321 


Q ss_pred             ---------------CCce--------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQV--------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~~--------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     .|+.        ....|+|++|.+++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~  209 (290)
T cd05613         159 EVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFT  209 (290)
T ss_pred             cccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCC
Confidence                           1221        124699999999999999999984

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.93  E-value=5.3e-25  Score=213.82  Aligned_cols=177  Identities=25%  Similarity=0.403  Sum_probs=155.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++.+.||+|+||.||+|....+++.+++|.+....     ..+.+..|+++++.++||||+++++++......|+++
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~   77 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE-----DLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVM   77 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH-----HHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEE
Confidence            57999999999999999999999889999999986542     1577889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK----  461 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~----  461 (489)
                      ||+++++|.+++.... ..+++..+..++.|++.||.|||+.+++|+||+|+||+++.++.++|+|||++......    
T Consensus        78 e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~  156 (256)
T cd06612          78 EYCGAGSVSDIMKITN-KTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKR  156 (256)
T ss_pred             ecCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCcccc
Confidence            9999999999997543 45899999999999999999999999999999999999999999999999998643311    


Q ss_pred             -----------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          462 -----------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -----------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 |+.      ...+|+|++|.+++++++|..||.
T Consensus       157 ~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~  200 (256)
T cd06612         157 NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYS  200 (256)
T ss_pred             ccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                       111      124689999999999999999984

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.93  E-value=3e-25  Score=219.44  Aligned_cols=179  Identities=23%  Similarity=0.347  Sum_probs=152.7

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++++.||.|++|.||+|.+..+|+.||+|.+.....  ......+..|+.+++.++||||+++++++...+..++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAE--EGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFE   78 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEeccccc--ccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEe
Confidence            48899999999999999999999999999999875432  2234566789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          387 FCPGGELFALLDKQP-MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~-~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      |++ ++|.+++.... ...+++..+..++.|++.||.|||++|++|+||||+||++++++.++|+|||++....      
T Consensus        79 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~  157 (284)
T cd07836          79 YMD-KDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTF  157 (284)
T ss_pred             cCC-ccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcccc
Confidence            997 48998887643 2358999999999999999999999999999999999999999999999999885321      


Q ss_pred             ---------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               ..|+.       ...+|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~  202 (284)
T cd07836         158 SNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFP  202 (284)
T ss_pred             ccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                     11221       224588999999999999999885

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.93  E-value=5e-25  Score=214.71  Aligned_cols=178  Identities=26%  Similarity=0.470  Sum_probs=156.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||.|++|.||+|.+..+++.|++|.+.....  ......+..|+.++..++||||+++++++......+++||
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGD--EEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLE   79 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcc--hHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEE
Confidence            68899999999999999999999999999999876532  2456778899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccCCC----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~----  461 (489)
                      |+++++|.+++...  ..+++..+..++.|++.||.|||+ +|++|+||+|+||+++.++.++|+|||++......    
T Consensus        80 ~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~  157 (264)
T cd06623          80 YMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC  157 (264)
T ss_pred             ecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcc
Confidence            99999999999875  458999999999999999999999 99999999999999999999999999988643211    


Q ss_pred             -----------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          462 -----------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -----------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 |+.      ....|+|++|.+++++++|..||.
T Consensus       158 ~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~  201 (264)
T cd06623         158 NTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFL  201 (264)
T ss_pred             cceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence                       111      124599999999999999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.93  E-value=3.8e-25  Score=225.50  Aligned_cols=185  Identities=22%  Similarity=0.322  Sum_probs=152.5

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCC-------CcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGA-------GELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYA  373 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~t-------g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~  373 (489)
                      ++...+|++.+.||+|+||.||+|.+...       +..||+|.+...  ......+.+..|+.+++++ +||||+++++
T Consensus         8 ~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~   85 (334)
T cd05100           8 ELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDD--ATDKDLSDLVSEMEMMKMIGKHKNIINLLG   85 (334)
T ss_pred             ccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccc--cCHHHHHHHHHHHHHHHhhcCCCCeeeeeE
Confidence            44556799999999999999999986432       247899988643  2334567788999999999 7999999999


Q ss_pred             EEEeCCeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCE
Q 042772          374 SFQTSTHICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI  439 (489)
Q Consensus       374 ~~~~~~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NI  439 (489)
                      ++.....++++|||+++|+|.+++....              ...++...+..++.|++.||.|||++|++||||||+||
T Consensus        86 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Ni  165 (334)
T cd05100          86 ACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNV  165 (334)
T ss_pred             EEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceE
Confidence            9999999999999999999999997632              23467888899999999999999999999999999999


Q ss_pred             EEecCCcEEEEecCCccccCC-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          440 LLQKDGHVVLTDFDLSFMTSC-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       440 Lld~~g~vKL~DFGlS~~~~~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |++.++.+||+|||+++....                 +|+.      ...+|+|++|++++++++ |..||.
T Consensus       166 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  238 (334)
T cd05100         166 LVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYP  238 (334)
T ss_pred             EEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999863221                 1111      124589999999999987 888874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.93  E-value=2.1e-25  Score=220.66  Aligned_cols=179  Identities=24%  Similarity=0.331  Sum_probs=152.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|+||.||+|.++.+++.||+|.++.... .......+..|+++++.++||||+++++++...+..+++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESED-DEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcc-cccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            68999999999999999999999999999998865432 23345678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-----  461 (489)
                      |++++.+..+....  ..+++..+..++.|++.||.|||+++++|+||+|+||++++++.+||+|||++......     
T Consensus        81 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~  158 (288)
T cd07833          81 YVERTLLELLEASP--GGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPL  158 (288)
T ss_pred             cCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccc
Confidence            99876666555443  34899999999999999999999999999999999999999999999999987643211     


Q ss_pred             -----------C-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 -----------P-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -----------~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 |       .....+|+|++|.+++++++|..||.
T Consensus       159 ~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~  203 (288)
T cd07833         159 TDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFP  203 (288)
T ss_pred             cCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCC
Confidence                       1       11234589999999999999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.93  E-value=5.6e-25  Score=215.04  Aligned_cols=172  Identities=23%  Similarity=0.341  Sum_probs=144.7

Q ss_pred             ccCCCCceEEEEEEE--cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          313 PLGCGDTGSVHLVEL--QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       313 ~LG~G~fG~Vy~a~~--~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      .||+|+||.||+|.+  ..++..+|+|+++... .+....+.+..|+.+++.++||||+++++++.. ...++||||+++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~   79 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDN-NDPALKDELLREANVMQQLDNPYIVRMIGICEA-ESWMLVMELAEL   79 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCC-CcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCcEEEEecCCC
Confidence            689999999999975  4567899999886442 234456778899999999999999999998754 467999999999


Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----------  460 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----------  460 (489)
                      |+|.+++...  ..+++..+..++.|++.||.|||++|++||||||.||+++.++.+||+|||++.....          
T Consensus        80 ~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  157 (257)
T cd05116          80 GPLNKFLQKN--KHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTH  157 (257)
T ss_pred             CcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCC
Confidence            9999999765  3489999999999999999999999999999999999999999999999999864321          


Q ss_pred             --------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 --------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 --------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                              +|+.      ...+|+|++|++++|+++ |..||.
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~  200 (257)
T cd05116         158 GKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYK  200 (257)
T ss_pred             CCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCC
Confidence                    1111      124689999999999997 999985

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.93  E-value=3.2e-25  Score=218.03  Aligned_cols=177  Identities=31%  Similarity=0.463  Sum_probs=148.3

Q ss_pred             cccccCCCCceEEEEEEEc----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          310 PIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       310 ~~~~LG~G~fG~Vy~a~~~----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +.+.||.|.||.||+|.+.    ..+..|++|.++..  ......+.+..|++++++++||||+++++++......++||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~--~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~   80 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPS--SSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVM   80 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTT--SSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEE
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccc--cccccceeeeecccccccccccccccccccccccccccccc
Confidence            5678999999999999998    44678999999543  23445788999999999999999999999999888899999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++|+|.++|.......+++.....++.|++.||.|||+++++|+||+|+|||++.++.+||+|||++.....     
T Consensus        81 e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~  160 (259)
T PF07714_consen   81 EYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYK  160 (259)
T ss_dssp             E--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999987445689999999999999999999999999999999999999999999999999876521     


Q ss_pred             ------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                  +|+      ....+|+|++|.+++|+++ |..||.
T Consensus       161 ~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~  207 (259)
T PF07714_consen  161 NDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFS  207 (259)
T ss_dssp             ESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                        111      1124489999999999998 778874

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.93  E-value=3.6e-25  Score=222.05  Aligned_cols=177  Identities=23%  Similarity=0.361  Sum_probs=154.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .+|++.+.||.|+||.||+|.+..+++.|++|.+....   ......+.+|+.+++.++||||+++++++......|+||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   95 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQK---QPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVM   95 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEeccc---CchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEE
Confidence            46999999999999999999999999999999986542   223466788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++++|..++...   .+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++.....     
T Consensus        96 e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~  172 (296)
T cd06655          96 EYLAGGSLTDVVTET---CMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKR  172 (296)
T ss_pred             EecCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccccccC
Confidence            999999999998753   478999999999999999999999999999999999999999999999998753211     


Q ss_pred             ----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|+.      ...+|+|++|++++++++|..||.
T Consensus       173 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~  216 (296)
T cd06655         173 STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYL  216 (296)
T ss_pred             CCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                      1221      134689999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.93  E-value=2e-25  Score=230.36  Aligned_cols=170  Identities=23%  Similarity=0.377  Sum_probs=144.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .+|++++.||+|+||.||+|.+..+++.||+|...+.         ....|+.+++.++||||+++++++......++||
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~---------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  136 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG---------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVL  136 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc---------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEE
Confidence            4699999999999999999999999999999975432         1245889999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      |++ .++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....      
T Consensus       137 e~~-~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~  214 (357)
T PHA03209        137 PHY-SSDLYTYLTKRS-RPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFL  214 (357)
T ss_pred             Ecc-CCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccccCcccc
Confidence            999 569999887643 458999999999999999999999999999999999999999999999999986321      


Q ss_pred             --------CCCcee------ecccccchHHHHHHHHhCCcc
Q 042772          460 --------CKPQVF------YHAHVNGFYFIMYKWLTGYFT  486 (489)
Q Consensus       460 --------~~~~~~------~~~~v~s~g~~a~e~~~G~lp  486 (489)
                              .+|+.+      ..+|+|++|+++++++++..+
T Consensus       215 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~  255 (357)
T PHA03209        215 GLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPST  255 (357)
T ss_pred             cccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCc
Confidence                    112222      345889999999999875433

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.93  E-value=4.9e-25  Score=218.08  Aligned_cols=177  Identities=24%  Similarity=0.377  Sum_probs=153.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      -|+..+.||.|+||.||+|.+..++..||+|.+....  .......+.+|+.+++.++||||+++++++......++|||
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   82 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME   82 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEE
Confidence            3788899999999999999999899999999886542  23445678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      |+++++|.+++...   .+++..+..++.|++.|+.|||+.|++|+||||+||+++.++.++|+|||++....       
T Consensus        83 ~~~~~~l~~~i~~~---~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~  159 (277)
T cd06641          83 YLGGGSALDLLEPG---PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRN  159 (277)
T ss_pred             eCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchhhhc
Confidence            99999999998753   47899999999999999999999999999999999999999999999999885321       


Q ss_pred             --------CCCcee------ecccccchHHHHHHHHhCCcccC
Q 042772          460 --------CKPQVF------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~~~~~~------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .+|+..      ..+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~  202 (277)
T cd06641         160 TFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHS  202 (277)
T ss_pred             cccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCC
Confidence                    112221      23589999999999999999984

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.93  E-value=6.3e-25  Score=213.08  Aligned_cols=173  Identities=21%  Similarity=0.374  Sum_probs=146.1

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      +.||+|+||.||+|... ++..+|+|.+....  .......+..|+.+++.++||||+++++++......++||||++++
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   77 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDL--PQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGG   77 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEEEEecCCcC--CHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCC
Confidence            46899999999999865 58899999886543  2333456788999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----------
Q 042772          392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----------  460 (489)
Q Consensus       392 sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----------  460 (489)
                      +|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++.....           
T Consensus        78 ~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~  156 (250)
T cd05085          78 DFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQI  156 (250)
T ss_pred             cHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCC
Confidence            9999987653 3478999999999999999999999999999999999999999999999999853211           


Q ss_pred             -----CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 -----KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -----~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                           +|+.      ....|+|++|++++++++ |..||.
T Consensus       157 ~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~  196 (250)
T cd05085         157 PIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYP  196 (250)
T ss_pred             cccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCC
Confidence                 1111      123589999999999987 998884

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.93  E-value=4.1e-25  Score=217.68  Aligned_cols=180  Identities=21%  Similarity=0.306  Sum_probs=152.0

Q ss_pred             cCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      .+|++++.||.|+||.||+|..+.     +.+.+++|.+....  .......+..|+.++++++||||+++++++.....
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   82 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTK--DENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEP   82 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCcc--chHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCc
Confidence            579999999999999999999764     35689999886532  23356778899999999999999999999998889


Q ss_pred             EEEEEecCCCCCHHHHHhhCCC-------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecC
Q 042772          381 ICLITDFCPGGELFALLDKQPM-------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFD  453 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~-------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFG  453 (489)
                      .|+||||+++|+|.+++.....       ..+++..+..++.|++.||.|||+.+|+||||||+||+++.++.++|+|||
T Consensus        83 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~  162 (275)
T cd05046          83 HYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLS  162 (275)
T ss_pred             ceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccc
Confidence            9999999999999999986541       148999999999999999999999999999999999999999999999999


Q ss_pred             CccccC----------------CCCce------eecccccchHHHHHHHHh-CCccc
Q 042772          454 LSFMTS----------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTY  487 (489)
Q Consensus       454 lS~~~~----------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY  487 (489)
                      ++....                .+|+.      ...+|+|++|++++++++ |..||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~  219 (275)
T cd05046         163 LSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPF  219 (275)
T ss_pred             cccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence            975321                11111      223589999999999987 77777

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.93  E-value=3.4e-25  Score=216.61  Aligned_cols=179  Identities=26%  Similarity=0.410  Sum_probs=156.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|+..+.||.|+||.||+|.++.+++.+|+|.+.....  ......+.+|+++++.++||||+++++.+......+++||
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN--EAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICME   79 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC--hHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEE
Confidence            68889999999999999999999999999999876532  3455678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      |+++++|.+++.... ..+++..+..++.|++.||.|||+ .|++|+||||+||+++.++.++|+|||.+....      
T Consensus        80 ~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~  158 (265)
T cd06605          80 YMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKT  158 (265)
T ss_pred             ecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhc
Confidence            999999999998753 458999999999999999999999 999999999999999999999999999875321      


Q ss_pred             -------CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 -------CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -------~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             .+|+      .....|+|++|.+++++++|..||.
T Consensus       159 ~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~  200 (265)
T cd06605         159 FVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYP  200 (265)
T ss_pred             ccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                   1121      1234599999999999999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.93  E-value=3.8e-25  Score=219.86  Aligned_cols=183  Identities=20%  Similarity=0.315  Sum_probs=152.4

Q ss_pred             cccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      ..++|++.+.||+|+||.||+|.+..     ++..||+|.+....  .......+.+|+.+++.++||||+++++++...
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~   80 (288)
T cd05050           3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDHPNIVKLLGVCAVG   80 (288)
T ss_pred             ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCc--CHHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence            34679999999999999999999753     57899999886542  234456788899999999999999999999998


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCC--------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCC
Q 042772          379 THICLITDFCPGGELFALLDKQP--------------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPEN  438 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~--------------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~N  438 (489)
                      ...+++|||+++|+|.+++....                    ...+++..+..++.|++.||.|||+++++||||||+|
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~n  160 (288)
T cd05050          81 KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRN  160 (288)
T ss_pred             CccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhh
Confidence            89999999999999999997531                    1236788899999999999999999999999999999


Q ss_pred             EEEecCCcEEEEecCCccccCC-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          439 ILLQKDGHVVLTDFDLSFMTSC-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       439 ILld~~g~vKL~DFGlS~~~~~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |+++.++.++|+|||++.....                 +|+.      ...+|+|++|++++++++ |..||.
T Consensus       161 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~  234 (288)
T cd05050         161 CLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYY  234 (288)
T ss_pred             eEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999863210                 1111      123589999999999986 877873

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.93  E-value=5.1e-25  Score=219.74  Aligned_cols=181  Identities=21%  Similarity=0.279  Sum_probs=151.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ..+|.+.+.||+|+||.||+|....     ++..+++|.+...   .....+.+.+|+++++.++||||+++++++....
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP---TLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD   80 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCc---cHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC
Confidence            4568899999999999999998643     4567889987543   2334466888999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC
Q 042772          380 HICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g  445 (489)
                      ..++||||+++++|.+++....              ...+++..++.++.||+.||.|||++||+||||||+|||++.++
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~  160 (291)
T cd05094          81 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANL  160 (291)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCC
Confidence            9999999999999999997642              13378999999999999999999999999999999999999999


Q ss_pred             cEEEEecCCccccC-----------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          446 HVVLTDFDLSFMTS-----------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       446 ~vKL~DFGlS~~~~-----------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .++|+|||++....                 .+|+.      ...+|+|++|++++++++ |..||.
T Consensus       161 ~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  227 (291)
T cd05094         161 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWF  227 (291)
T ss_pred             cEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999999985321                 11221      124689999999999997 999973

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.93  E-value=7.5e-25  Score=215.93  Aligned_cols=175  Identities=23%  Similarity=0.352  Sum_probs=145.6

Q ss_pred             cccCCCCceEEEEEEEcCCCc--EEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEEecC
Q 042772          312 KPLGCGDTGSVHLVELQGAGE--LYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLITDFC  388 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~--~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVmEy~  388 (489)
                      +.||+|+||.||+|.++.++.  .+++|.+...  ........+..|+.++.++ +||||+++++++.....++++|||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~   78 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA   78 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEcccc--CCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeC
Confidence            368999999999999988775  4688877532  2344556788899999999 7999999999999999999999999


Q ss_pred             CCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          389 PGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       389 ~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                      ++|+|.+++....              ...+++..+..++.|++.||+|||+.|++||||||+||++++++.+||+|||+
T Consensus        79 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl  158 (270)
T cd05047          79 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGL  158 (270)
T ss_pred             CCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCC
Confidence            9999999997542              12478999999999999999999999999999999999999999999999999


Q ss_pred             ccccC--------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          455 SFMTS--------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       455 S~~~~--------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +....              .+|+.      ....|+|++|++++++++ |..||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~  213 (270)
T cd05047         159 SRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC  213 (270)
T ss_pred             ccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCcc
Confidence            84211              11211      134589999999999996 999884

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.93  E-value=6.4e-25  Score=212.91  Aligned_cols=179  Identities=26%  Similarity=0.365  Sum_probs=152.5

Q ss_pred             cccccccCCCCceEEEEEEEcCCC----cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAG----ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg----~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      +++.+.||.|+||.||++.+..++    ..+|+|.+....  .......+..|+.+++.++||||+++++++...+..++
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   78 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDA--DEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMI   78 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCC--ChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEE
Confidence            457789999999999999998766    899999986542  22256788889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC--
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK--  461 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~--  461 (489)
                      +|||+++++|.+++.......+++..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++......  
T Consensus        79 i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  158 (258)
T smart00219       79 VMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY  158 (258)
T ss_pred             EEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceecccccc
Confidence            999999999999998754333899999999999999999999999999999999999999999999999998643211  


Q ss_pred             --------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          462 --------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       462 --------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                    |+      ....+|+|++|++++++++ |..||.
T Consensus       159 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~  206 (258)
T smart00219      159 YKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYP  206 (258)
T ss_pred             cccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence                          11      1123588999999999987 788874

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.93  E-value=1e-24  Score=220.70  Aligned_cols=180  Identities=24%  Similarity=0.312  Sum_probs=154.8

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|...+.||+|+||.||+|.+..++..+|+|.+.............+..|+++++.++|||++++++++......++|||
T Consensus        26 ~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  105 (317)
T cd06635          26 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVME  105 (317)
T ss_pred             hhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEe
Confidence            48899999999999999999999999999999876544444556678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |++ |+|.+++.... ..+++..+..++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++.....      
T Consensus       106 ~~~-g~l~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~  183 (317)
T cd06635         106 YCL-GSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVG  183 (317)
T ss_pred             CCC-CCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCCcccccC
Confidence            996 58888876543 3489999999999999999999999999999999999999999999999998754321      


Q ss_pred             -----CCce---------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -----KPQV---------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----~~~~---------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           +|+.         ...+|+|++|++++++++|..||.
T Consensus       184 ~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~  225 (317)
T cd06635         184 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF  225 (317)
T ss_pred             CccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence                 1222         234589999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.93  E-value=2.4e-25  Score=222.93  Aligned_cols=176  Identities=24%  Similarity=0.385  Sum_probs=151.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|.....||+|+||.||++....++..||+|.+...   .......+..|+.+++.++||||+++++.+...+..|+|||
T Consensus        23 ~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e   99 (292)
T cd06658          23 YLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLR---KQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVME   99 (292)
T ss_pred             HHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecc---hHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEe
Confidence            455567899999999999999999999999988653   23345667889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+++++|.+++...   .+++..+..++.||+.||.|||++||+||||||+||++++++.++|+|||++.....      
T Consensus       100 ~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~  176 (292)
T cd06658         100 FLEGGALTDIVTHT---RMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRK  176 (292)
T ss_pred             CCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCc
Confidence            99999999988653   378999999999999999999999999999999999999999999999998853210      


Q ss_pred             ---------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +|+      ....+|+|++|++++++++|..||.
T Consensus       177 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~  219 (292)
T cd06658         177 SLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYF  219 (292)
T ss_pred             eeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                     111      1234699999999999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.93  E-value=4.8e-25  Score=219.43  Aligned_cols=181  Identities=18%  Similarity=0.284  Sum_probs=150.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCe----
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTH----  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~----  380 (489)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+..... .......+.+|+.+++.+. ||||+++++++.....    
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~   79 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMD-EEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKP   79 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhcc-ccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCc
Confidence            368999999999999999999999999999998865422 2223456778999999995 6999999999887655    


Q ss_pred             -EEEEEecCCCCCHHHHHhhCC---CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-CCcEEEEecCCc
Q 042772          381 -ICLITDFCPGGELFALLDKQP---MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLS  455 (489)
Q Consensus       381 -~~lVmEy~~ggsL~~~L~~~~---~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-~g~vKL~DFGlS  455 (489)
                       .|++|||+++ +|.+++....   ...+++..++.++.||+.||.|||++|++||||||+||+++. ++.+||+|||++
T Consensus        80 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~  158 (295)
T cd07837          80 SLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLG  158 (295)
T ss_pred             eEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccc
Confidence             8999999975 8999887542   235899999999999999999999999999999999999998 889999999988


Q ss_pred             cccC---------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTS---------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~---------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....               .+|+.       ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~  213 (295)
T cd07837         159 RAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFP  213 (295)
T ss_pred             eecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCC
Confidence            6321               11221       234689999999999999998883

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.93  E-value=3.2e-25  Score=236.68  Aligned_cols=170  Identities=19%  Similarity=0.249  Sum_probs=145.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ..|.+.+.||+|+||.||+|.+..+++.||+|....         ..+.+|+.++++++||||+++++++......++||
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~---------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~  239 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY---------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVL  239 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc---------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence            469999999999999999999999999999995421         23457999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      |++ .++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+++....     
T Consensus       240 e~~-~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~  317 (461)
T PHA03211        240 PKY-RSDLYTYLGARL-RPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTP  317 (461)
T ss_pred             Ecc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecccccccc
Confidence            999 579999987653 3589999999999999999999999999999999999999999999999999864321     


Q ss_pred             ------------CCc------eeecccccchHHHHHHHHhCCcc
Q 042772          461 ------------KPQ------VFYHAHVNGFYFIMYKWLTGYFT  486 (489)
Q Consensus       461 ------------~~~------~~~~~~v~s~g~~a~e~~~G~lp  486 (489)
                                  .|+      ....+|+|++|++++|+++|..+
T Consensus       318 ~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~  361 (461)
T PHA03211        318 FHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTAS  361 (461)
T ss_pred             cccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCC
Confidence                        011      11235899999999999887654

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.8e-25  Score=250.17  Aligned_cols=182  Identities=23%  Similarity=0.305  Sum_probs=156.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCC-----cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAG-----ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg-----~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ....++.+.||+|.||.||.|...+..     ..||+|.+.+.  .+......|..|..+|+.++|||||+++|.+.+..
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~--~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~  768 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL--SSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSG  768 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEecccc--CCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCC
Confidence            456788899999999999999987532     24889988654  46778899999999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhC-----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          380 HICLITDFCPGGELFALLDKQ-----PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~-----~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                      ..+|++|||+||+|..+|++.     ....++......++.|||.|+.||+++++|||||..+|+||++...+||+|||+
T Consensus       769 ~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGl  848 (1025)
T KOG1095|consen  769 PPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGL  848 (1025)
T ss_pred             CcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccch
Confidence            999999999999999999875     123478899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCC-----------Ccee------------ecccccchHHHHHHH-HhCCcccC
Q 042772          455 SFMTSCK-----------PQVF------------YHAHVNGFYFIMYKW-LTGYFTYV  488 (489)
Q Consensus       455 S~~~~~~-----------~~~~------------~~~~v~s~g~~a~e~-~~G~lpY~  488 (489)
                      |+.+...           |-.|            ..+|+|+||+.++|+ .+|..||.
T Consensus       849 ArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~  906 (1025)
T KOG1095|consen  849 ARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYP  906 (1025)
T ss_pred             hHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCC
Confidence            9833210           1112            355999999999998 59999996

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.93  E-value=1e-24  Score=210.48  Aligned_cols=179  Identities=30%  Similarity=0.390  Sum_probs=157.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THICLI  384 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~~lV  384 (489)
                      +|+..+.||+|++|.||+|.+..+++.+++|.+..... .....+.+.+|+.++++++||||+++++.+...  ...+++
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv   79 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGD-SEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIF   79 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeecccc-chHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEE
Confidence            47888999999999999999999999999999876532 245677888999999999999999999999888  889999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      |||+++++|.+++....  .+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||.+......   
T Consensus        80 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  157 (260)
T cd06606          80 LEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETG  157 (260)
T ss_pred             EEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEeccccccc
Confidence            99999999999998764  5899999999999999999999999999999999999999999999999988644322   


Q ss_pred             --------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 --------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 --------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    |+      ....+|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  204 (260)
T cd06606         158 EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWS  204 (260)
T ss_pred             ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                          11      1234689999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.93  E-value=1.1e-24  Score=214.18  Aligned_cols=181  Identities=24%  Similarity=0.292  Sum_probs=152.5

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..+.+.....||+|+||.||+|.+..++..||+|.+...   .....+.+.+|+.+++.++||||+++++++......++
T Consensus         6 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   82 (268)
T cd06624           6 EYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPER---DSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKI   82 (268)
T ss_pred             ccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCC---CHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEE
Confidence            344555667899999999999999999999999988654   23345678889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCC--CHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-CCcEEEEecCCccccC-
Q 042772          384 ITDFCPGGELFALLDKQPMKIF--REDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLSFMTS-  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l--~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-~g~vKL~DFGlS~~~~-  459 (489)
                      +|||+++++|.+++.... ..+  ++..+..++.|++.||.|||++||+||||||+||+++. ++.++|+|||++.... 
T Consensus        83 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~  161 (268)
T cd06624          83 FMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAG  161 (268)
T ss_pred             EEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheeccc
Confidence            999999999999997642 224  78888999999999999999999999999999999976 6799999999875321 


Q ss_pred             --------------CCCce--------eecccccchHHHHHHHHhCCcccC
Q 042772          460 --------------CKPQV--------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------------~~~~~--------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    .+|+.        ...+|+|++|.+++++++|..||.
T Consensus       162 ~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~  212 (268)
T cd06624         162 INPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFI  212 (268)
T ss_pred             CCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCc
Confidence                          11222        234689999999999999999984

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.93  E-value=8.3e-25  Score=212.69  Aligned_cols=181  Identities=22%  Similarity=0.390  Sum_probs=154.3

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--CCeEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--STHICLI  384 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~~~lV  384 (489)
                      +|++.+.||.|+||.||+|.+..+++.+|+|.+..... .....+.+..|+++++.++||||+++++.+..  ....+++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNM-TEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIV   79 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccC-CHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEE
Confidence            48889999999999999999999999999999876533 34455678889999999999999999997764  4578999


Q ss_pred             EecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHH-----HCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          385 TDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLH-----CLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH-----~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      |||+++++|.+++...  ....+++..++.++.|++.||.|||     +.+++|+||||+||+++.++.+||+|||++..
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~  159 (265)
T cd08217          80 MEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKI  159 (265)
T ss_pred             ehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccccccc
Confidence            9999999999999763  2345899999999999999999999     89999999999999999999999999999865


Q ss_pred             cCCC---------------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          458 TSCK---------------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~~---------------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....               |+.      ....|+|++|.+++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  211 (265)
T cd08217         160 LGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFT  211 (265)
T ss_pred             ccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCccc
Confidence            4311               111      123589999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.93  E-value=1.1e-24  Score=216.88  Aligned_cols=180  Identities=26%  Similarity=0.353  Sum_probs=152.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeC-----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTS-----  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~-----  378 (489)
                      .++|.+.+.||+|+||.||+|....+++.+|+|.+....    .....+..|+.++..+ +|||++++++++...     
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~----~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~   96 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS----DVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVG   96 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc----cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCC
Confidence            567999999999999999999999999999999986532    1234566788899888 799999999998753     


Q ss_pred             CeEEEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          379 THICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      ...++||||+++++|.+++...  ....+++..++.++.|++.||.|||+.|++|+||||+||+++.++.+||+|||++.
T Consensus        97 ~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~  176 (291)
T cd06639          97 GQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSA  176 (291)
T ss_pred             CeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccch
Confidence            3689999999999999988642  23458999999999999999999999999999999999999999999999999875


Q ss_pred             ccC---------------CCCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          457 MTS---------------CKPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~---------------~~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...               .+|+.           ...+|+|++|++++++++|..||.
T Consensus       177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~  234 (291)
T cd06639         177 QLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLF  234 (291)
T ss_pred             hcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCC
Confidence            321               12322           235699999999999999999984

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.93  E-value=5.9e-25  Score=220.93  Aligned_cols=181  Identities=24%  Similarity=0.326  Sum_probs=149.3

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCc----EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGE----LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~----~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ...+|+..+.||+|+||.||+|.+..++.    .+|+|.+....  .......+..|+.+++.++||||+++++++... 
T Consensus         5 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-   81 (303)
T cd05110           5 KETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT--GPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-   81 (303)
T ss_pred             chhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-
Confidence            34679999999999999999999887776    56888876442  233345678899999999999999999988654 


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++++||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+|+||||+||+++.++.+||+|||+++...
T Consensus        82 ~~~~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~  160 (303)
T cd05110          82 TIQLVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLE  160 (303)
T ss_pred             CceeeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEcccccccccc
Confidence            4789999999999999997653 347899999999999999999999999999999999999999999999999996432


Q ss_pred             C-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 C-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .                 +|+.      ...+|+|++|++++++++ |..||.
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~  213 (303)
T cd05110         161 GDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD  213 (303)
T ss_pred             CcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCC
Confidence            1                 0111      123488999999999886 888884

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.93  E-value=6e-25  Score=221.17  Aligned_cols=171  Identities=22%  Similarity=0.354  Sum_probs=139.3

Q ss_pred             cccCCCCceEEEEEEEcC--CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--CCeEEEEEec
Q 042772          312 KPLGCGDTGSVHLVELQG--AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--STHICLITDF  387 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~~~lVmEy  387 (489)
                      ..||+|+||.||+|..+.  ++..||+|.+.....     ...+.+|+.+++.++||||+++++++..  ...++++|||
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~   81 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-----SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDY   81 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-----cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEee
Confidence            579999999999999764  568999998865421     2346679999999999999999998854  4678999999


Q ss_pred             CCCCCHHHHHhhC-------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE----ecCCcEEEEecCCcc
Q 042772          388 CPGGELFALLDKQ-------PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL----QKDGHVVLTDFDLSF  456 (489)
Q Consensus       388 ~~ggsL~~~L~~~-------~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl----d~~g~vKL~DFGlS~  456 (489)
                      ++ ++|.+++...       ....+++..+..++.||+.||.|||++||+||||||+|||+    +.++.+||+|||+++
T Consensus        82 ~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07867          82 AE-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             eC-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeecccee
Confidence            95 5888887532       12347899999999999999999999999999999999999    566799999999986


Q ss_pred             ccC------------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          457 MTS------------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~------------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...                  .+|+.       ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~  217 (317)
T cd07867         161 LFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             ccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcc
Confidence            432                  12222       123599999999999999999984

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.93  E-value=1.5e-25  Score=233.37  Aligned_cols=183  Identities=21%  Similarity=0.335  Sum_probs=156.1

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..+...+.+.||+|-||.|++|+..+ +..||+|.++...  ..+....|..|+.+|.+|+||||+.++++|..++.+|
T Consensus       535 fPRs~L~~~ekiGeGqFGEVhLCeveg-~lkVAVK~Lr~~a--~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePic  611 (807)
T KOG1094|consen  535 FPRSRLRFKEKIGEGQFGEVHLCEVEG-PLKVAVKILRPDA--TKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLC  611 (807)
T ss_pred             cchhheehhhhhcCcccceeEEEEecC-ceEEEEeecCccc--chhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchH
Confidence            344567888999999999999999875 7899999997653  4455688999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCCC
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKP  462 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~~  462 (489)
                      +||||++.|+|.+++..+....+.......|+.||+.||+||.+.++|||||.++|+|++.++++||+|||+|+-+...+
T Consensus       612 mI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~  691 (807)
T KOG1094|consen  612 MITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGD  691 (807)
T ss_pred             HHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCC
Confidence            99999999999999988743334566677799999999999999999999999999999999999999999998554322


Q ss_pred             -----------------------ceeecccccchHHHHHHHH--hCCcccC
Q 042772          463 -----------------------QVFYHAHVNGFYFIMYKWL--TGYFTYV  488 (489)
Q Consensus       463 -----------------------~~~~~~~v~s~g~~a~e~~--~G~lpY~  488 (489)
                                             .....+|+|.+|.+++|++  |...||.
T Consensus       692 yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~  742 (807)
T KOG1094|consen  692 YYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYS  742 (807)
T ss_pred             ceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchh
Confidence                                   1224569999999999974  6777774

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=4.7e-26  Score=237.09  Aligned_cols=180  Identities=23%  Similarity=0.284  Sum_probs=154.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ..|.-++.||.|+||.||-|.+..+.+.||||.++.+........+.+..|+..|+++.|||++.+-+||..+...||||
T Consensus        26 klf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVM  105 (948)
T KOG0577|consen   26 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVM  105 (948)
T ss_pred             HHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHH
Confidence            34888999999999999999999999999999998876667777889999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||| -|+-.+++.-.. +++.+..+..|..+.+.||.|||+.+.||||||..|||+++.|.|||+|||.|.+...     
T Consensus       106 EYC-lGSAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFv  183 (948)
T KOG0577|consen  106 EYC-LGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSFV  183 (948)
T ss_pred             HHH-hccHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcCchhccc
Confidence            999 568888887653 5689999999999999999999999999999999999999999999999999865431     


Q ss_pred             CCceee---------------cccccchHHHHHHHHhCCccc
Q 042772          461 KPQVFY---------------HAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       461 ~~~~~~---------------~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      +..+|+               ..|||++|.+..|++--..|+
T Consensus       184 GTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPl  225 (948)
T KOG0577|consen  184 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL  225 (948)
T ss_pred             CCccccchhHheeccccccCCccceeeccchhhhhhhcCCCc
Confidence            122332               336677776666666555554

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.93  E-value=1.7e-24  Score=209.31  Aligned_cols=181  Identities=30%  Similarity=0.534  Sum_probs=157.7

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||.|+||.||++.+..++..+++|.+..... .......+..|+++++.++|||++++++.+......+++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e   79 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNM-SEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVME   79 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccC-ChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEE
Confidence            48889999999999999999999999999999976433 23455678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          387 FCPGGELFALLDKQP--MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~--~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      |+++++|.+++....  ...+++..+..++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++......   
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~  159 (258)
T cd08215          80 YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDL  159 (258)
T ss_pred             ecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCcce
Confidence            999999999998753  356899999999999999999999999999999999999999999999999998643211   


Q ss_pred             ------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  |+      .....|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~  204 (258)
T cd08215         160 AKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFE  204 (258)
T ss_pred             ecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCC
Confidence                        11      1234689999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.93  E-value=1.1e-24  Score=215.54  Aligned_cols=184  Identities=18%  Similarity=0.204  Sum_probs=154.2

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcC----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQG----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-  377 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-  377 (489)
                      +..++|++.+.||+|+||.||+|.+..    ++..|++|.+...  ........+.+|..+++.++||||+++++++.. 
T Consensus         3 ~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~   80 (280)
T cd05043           3 ISRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDH--ASEIQVTLLLQESCLLYGLSHQNILPILHVCIED   80 (280)
T ss_pred             cchhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCC--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Confidence            345689999999999999999999876    3588999988643  244556778889999999999999999998765 


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCC------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEe
Q 042772          378 STHICLITDFCPGGELFALLDKQPM------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTD  451 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~D  451 (489)
                      ....+++++|+++++|.+++.....      ..+++..+..++.|++.||.|||+++++|+||||+||++++++.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d  160 (280)
T cd05043          81 GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITD  160 (280)
T ss_pred             CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECC
Confidence            4678999999999999999976422      3588999999999999999999999999999999999999999999999


Q ss_pred             cCCccccCC-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          452 FDLSFMTSC-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       452 FGlS~~~~~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||+++....                 +|+.      ...+|+|++|++++++++ |..||.
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  221 (280)
T cd05043         161 NALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYV  221 (280)
T ss_pred             CCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcC
Confidence            999974321                 1111      134589999999999997 999884

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.93  E-value=7.7e-25  Score=222.70  Aligned_cols=176  Identities=21%  Similarity=0.277  Sum_probs=149.3

Q ss_pred             cccCCC--CceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCC
Q 042772          312 KPLGCG--DTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       312 ~~LG~G--~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      ..||.|  +||+||+|.+..+|+.||+|++..... .....+.+.+|+.+++.++||||++++++|......++||||+.
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENC-TEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence            456666  999999999999999999999875433 23455788889999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc-----------
Q 042772          390 GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT-----------  458 (489)
Q Consensus       390 ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~-----------  458 (489)
                      +++|.+++.+.....+++..+..++.|++.||.|||++|++||||||+||+++.++.++++||+.+...           
T Consensus        83 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (328)
T cd08226          83 YGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVY  162 (328)
T ss_pred             CCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccc
Confidence            999999998764455899999999999999999999999999999999999999999999999743211           


Q ss_pred             -----------CCCCce--------eecccccchHHHHHHHHhCCcccC
Q 042772          459 -----------SCKPQV--------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 -----------~~~~~~--------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 ...|+.        ....|+|++|++++++++|..||.
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~  211 (328)
T cd08226         163 DFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQ  211 (328)
T ss_pred             cccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                       011222        234599999999999999999985

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.4e-24  Score=210.75  Aligned_cols=173  Identities=23%  Similarity=0.369  Sum_probs=148.0

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      +.||.|+||.||+|.+.. ++.||+|.+.....  ......+..|+.++++++||||+++++++......++||||++++
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   77 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLP--PDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGG   77 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCC
Confidence            468999999999999988 99999998865432  235567888999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------------
Q 042772          392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------------  459 (489)
Q Consensus       392 sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------------  459 (489)
                      +|.+++.... ..+++..+..++.|++.||.|||+++++||||||+||+++.++.++|+|||++....            
T Consensus        78 ~l~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~  156 (251)
T cd05041          78 SLLTFLRKKK-NRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQ  156 (251)
T ss_pred             cHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCc
Confidence            9999997643 347899999999999999999999999999999999999999999999999886332            


Q ss_pred             -----CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 -----CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 -----~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                           .+|+.      ...+|+|++|++++++++ |..||.
T Consensus       157 ~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~  197 (251)
T cd05041         157 IPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYP  197 (251)
T ss_pred             ceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCc
Confidence                 11211      124589999999999998 888874

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=6.9e-27  Score=239.97  Aligned_cols=185  Identities=33%  Similarity=0.582  Sum_probs=166.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+.+.+++.+..||-|+||.|-++..+.....+|+|++++....+......+..|..||..++.|+||++|..|.++.++
T Consensus       416 ~v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyv  495 (732)
T KOG0614|consen  416 QVKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYV  495 (732)
T ss_pred             ccchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhh
Confidence            45677899999999999999999999876667999999998888888888899999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |++||-|-||+|+..|..+  +.|++.++++++..++.|++|||++|||+|||||+|++++.+|.+||.|||+|..+.. 
T Consensus       496 YmLmEaClGGElWTiLrdR--g~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g  573 (732)
T KOG0614|consen  496 YMLMEACLGGELWTILRDR--GSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSG  573 (732)
T ss_pred             hhhHHhhcCchhhhhhhhc--CCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccC
Confidence            9999999999999999886  4499999999999999999999999999999999999999999999999999975432 


Q ss_pred             --------CCceeec-----------ccccchHHHHHHHHhCCcccC
Q 042772          461 --------KPQVFYH-----------AHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------~~~~~~~-----------~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .|++..+           .|.|++|..++|+++|..||.
T Consensus       574 ~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs  620 (732)
T KOG0614|consen  574 RKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFS  620 (732)
T ss_pred             CceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCC
Confidence                    2333333           377999999999999999995

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.93  E-value=1.6e-25  Score=208.21  Aligned_cols=190  Identities=26%  Similarity=0.380  Sum_probs=157.7

Q ss_pred             hcCCCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHh-CCCCCcceeeEE
Q 042772          296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL-LDHPFLPTLYAS  374 (489)
Q Consensus       296 ~~~~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~  374 (489)
                      +..++.++.-++...+..||+|++|.|-+.++..+|...|+|.+....  +.+..++..+|+.+..+ .++|++|++|+.
T Consensus        36 I~~~~~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tv--n~q~q~r~L~dldi~~r~~~CPf~V~FyGa  113 (282)
T KOG0984|consen   36 IGDRNFEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATV--NSQEQKRLLMDLDIIMRTVDCPFTVHFYGA  113 (282)
T ss_pred             EecCccccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhc--ChHHHHHHHHhhhhhccCCCCCeEEEeehh
Confidence            444445666677888899999999999999999999999999996553  34556778889888665 479999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCCcEEEEe
Q 042772          375 FQTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDGHVVLTD  451 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~--~~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g~vKL~D  451 (489)
                      +..+..+++.||.+ ..+|..+-.+  ..++.++|..+-.|+..++.||.|||++ .++|||+||+||||+.+|++|+||
T Consensus       114 ~~regdvwIcME~M-~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCD  192 (282)
T KOG0984|consen  114 LFREGDVWICMELM-DTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICD  192 (282)
T ss_pred             hhccccEEEeHHHh-hhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcc
Confidence            99999999999999 5588766543  2346689999999999999999999965 799999999999999999999999


Q ss_pred             cCCccccC----------CC----C----------ceeecccccchHHHHHHHHhCCcccC
Q 042772          452 FDLSFMTS----------CK----P----------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       452 FGlS~~~~----------~~----~----------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ||+|-.+.          |.    |          .+.-.+|+|++|.++.|++++..||.
T Consensus       193 FGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~  253 (282)
T KOG0984|consen  193 FGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYE  253 (282)
T ss_pred             cccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccc
Confidence            99984221          11    1          23345699999999999999999997

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.93  E-value=8e-25  Score=212.70  Aligned_cols=181  Identities=24%  Similarity=0.446  Sum_probs=155.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|.+.+.||+|+||.||+|..+.+|..+|+|.+..... .......+.+|+.+++.++||||+++++.+......++|+|
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   79 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKM-PVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVME   79 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhc-cchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEe
Confidence            48889999999999999999999999999999876432 22344567789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-cEEEEecCCccccCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-~vKL~DFGlS~~~~~-----  460 (489)
                      |+++++|.+++.......+++..+..++.|++.||.|||+.+++|+||||+||++++++ .+||+|||.+.....     
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~  159 (257)
T cd08225          80 YCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELA  159 (257)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcccc
Confidence            99999999999876555689999999999999999999999999999999999999886 469999998854321     


Q ss_pred             ----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|+.      ...+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  203 (257)
T cd08225         160 YTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFE  203 (257)
T ss_pred             cccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                      1221      124589999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.93  E-value=1.1e-24  Score=212.01  Aligned_cols=178  Identities=25%  Similarity=0.366  Sum_probs=150.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..+|++.+.||+|+||.||+|.+.. +..+|+|.+......    ...+..|+++++.++|||++++++++......+++
T Consensus         3 ~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~~~k~~~~~~~~----~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v   77 (256)
T cd05112           3 PSELTLVQEIGSGQFGLVWLGYWLE-KRKVAIKTIREGAMS----EEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLV   77 (256)
T ss_pred             hhHeEEEeeecCcccceEEEEEEeC-CCeEEEEECCCCCCC----HHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEE
Confidence            3478999999999999999998864 678999988654322    24577899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+++++|.+++.... ..+++..+..++.|++.||.|||+.+++|+||||+||+++.++.++|+|||++.....    
T Consensus        78 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~  156 (256)
T cd05112          78 FEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYT  156 (256)
T ss_pred             EEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCccc
Confidence            99999999999997653 3478999999999999999999999999999999999999999999999998763211    


Q ss_pred             ------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 ------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                  .|+.      ...+|+|++|.+++++++ |..||.
T Consensus       157 ~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~  203 (256)
T cd05112         157 SSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYE  203 (256)
T ss_pred             ccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCC
Confidence                        1221      123689999999999987 999885

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.93  E-value=8.8e-25  Score=218.79  Aligned_cols=177  Identities=24%  Similarity=0.361  Sum_probs=153.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|.+.+.||+|+||.||++....+++.||+|.+...   .....+.+..|+.+++.++||||+++++.+......|+|+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~---~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~   95 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQ---QQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVM   95 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccc---cchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEE
Confidence            5799999999999999999999888999999998643   2233466788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++++|.+++.+.   .+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++....      
T Consensus        96 e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~  172 (293)
T cd06647          96 EYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR  172 (293)
T ss_pred             ecCCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceeccccccccc
Confidence            999999999998763   37899999999999999999999999999999999999999999999999874321      


Q ss_pred             ---------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.      ....|+|++|++++++++|..||.
T Consensus       173 ~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~  216 (293)
T cd06647         173 STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYL  216 (293)
T ss_pred             ccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                     11221      134699999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.93  E-value=7.2e-25  Score=220.48  Aligned_cols=182  Identities=25%  Similarity=0.335  Sum_probs=152.1

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THI  381 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~  381 (489)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|.+...... ......+.+|+.+++.++||||+++++++...  ..+
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNER-DGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSI   83 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCC-CCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeE
Confidence            456899999999999999999999999999999998654321 12223456799999999999999999998765  568


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ++||||+. ++|.+++.... ..+++..+..++.|++.||.|||+.|++||||||+||+++.++.+||+|||++..... 
T Consensus        84 ~lv~e~~~-~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~  161 (309)
T cd07845          84 FLVMEYCE-QDLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLP  161 (309)
T ss_pred             EEEEecCC-CCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCc
Confidence            99999995 58998887643 4589999999999999999999999999999999999999999999999998864321 


Q ss_pred             --------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 --------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    +|+.       ...+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~  210 (309)
T cd07845         162 AKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLP  210 (309)
T ss_pred             cCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCC
Confidence                          1221       234589999999999999999884

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.93  E-value=8.5e-26  Score=235.00  Aligned_cols=179  Identities=27%  Similarity=0.418  Sum_probs=152.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchH-----HHHHHHHHHHHHHhCC---CCCcceeeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-----KVHRACIEREIMSLLD---HPFLPTLYASFQ  376 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~-----~~~~~~~E~~il~~l~---HpnIv~l~~~~~  376 (489)
                      ..+|..++++|.|+||.|++|.++.....|++|.+.|....-..     .+..+-.|++||..++   |+||++++++|+
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFE  639 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFE  639 (772)
T ss_pred             cccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheee
Confidence            45699999999999999999999999999999999887653222     2344667999999997   999999999999


Q ss_pred             eCCeEEEEEecC-CCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          377 TSTHICLITDFC-PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       377 ~~~~~~lVmEy~-~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      +++++||+||-- +|.+|+++++..+.  ++|.++..|+.||+.|+++||++||||||||-+||+++.+|-+||+|||.|
T Consensus       640 ddd~yyl~te~hg~gIDLFd~IE~kp~--m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsa  717 (772)
T KOG1152|consen  640 DDDYYYLETEVHGEGIDLFDFIEFKPR--MDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSA  717 (772)
T ss_pred             cCCeeEEEecCCCCCcchhhhhhccCc--cchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccch
Confidence            999999999975 56799999998865  899999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCceeecccccchHHH--------------HHHHHhCCcccC
Q 042772          456 FMTSCKPQVFYHAHVNGFYFI--------------MYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~~~~~~~~~~v~s~g~~--------------a~e~~~G~lpY~  488 (489)
                      ..+...|-..   -+++.+|.              -+.|++|.++|+
T Consensus       718 a~~ksgpfd~---f~gtv~~aapevl~g~~y~gk~qdiwalgillyt  761 (772)
T KOG1152|consen  718 AYTKSGPFDV---FVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYT  761 (772)
T ss_pred             hhhcCCCcce---eeeeccccchhhhCCCccCCCcchhhhhhheeeE
Confidence            8776655332   22333344              356777887775

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.93  E-value=2e-25  Score=214.86  Aligned_cols=181  Identities=25%  Similarity=0.417  Sum_probs=153.3

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~  382 (489)
                      ..++.+.+..||+|+.|+|+++..+.+|...|+|.+.+.  .+....+++...+.++.+. ++|+||+.+|+|.....++
T Consensus        90 dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt--~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~  167 (391)
T KOG0983|consen   90 DINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRT--GNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVF  167 (391)
T ss_pred             ChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeeccc--CCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHH
Confidence            456778889999999999999999999999999999765  4566788888888887765 5899999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      +.||.| ..-+..++++ ..++++|..+-.+...++.||.||-. +||+|||+||+|||+|+.|.|||||||+|-.+.  
T Consensus       168 IcMelM-s~C~ekLlkr-ik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdS  245 (391)
T KOG0983|consen  168 ICMELM-STCAEKLLKR-IKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDS  245 (391)
T ss_pred             HHHHHH-HHHHHHHHHH-hcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeecc
Confidence            999988 3344455544 44669999999999999999999995 589999999999999999999999999984321  


Q ss_pred             --------C-------------CCceeecccccchHHHHHHHHhCCcccC
Q 042772          460 --------C-------------KPQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~-------------~~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              |             .+.+--.+|||++|..+.|+++|..||.
T Consensus       246 kAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~  295 (391)
T KOG0983|consen  246 KAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYK  295 (391)
T ss_pred             cccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCC
Confidence                    1             2333445699999999999999999996

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.92  E-value=1.5e-24  Score=213.31  Aligned_cols=181  Identities=22%  Similarity=0.268  Sum_probs=150.4

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCC---CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGA---GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~t---g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ...+|.+.+.||+|+||.||+|.+...   ...||+|......  .....+.+.+|+.+++.++||||+++++++.. ..
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~--~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~   80 (270)
T cd05056           4 QREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCT--SPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NP   80 (270)
T ss_pred             chhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcC--CHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CC
Confidence            345799999999999999999987644   4578999876442  24455678889999999999999999998875 45


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-  459 (489)
                      .++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++.... 
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  159 (270)
T cd05056          81 VWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLED  159 (270)
T ss_pred             cEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeeccc
Confidence            789999999999999997653 248999999999999999999999999999999999999999999999999885321 


Q ss_pred             ---------------CCCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          460 ---------------CKPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ---------------~~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                     .+|+.      ...+|+|++|++++++++ |..||.
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~  210 (270)
T cd05056         160 ESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQ  210 (270)
T ss_pred             ccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCC
Confidence                           11221      123589999999999874 999984

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.92  E-value=1.1e-24  Score=223.95  Aligned_cols=178  Identities=24%  Similarity=0.406  Sum_probs=150.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------  378 (489)
                      .++|+..+.||+|+||.||+|.+..+++.||+|.+.+... .......+.+|+.+++.++||||++++++|...      
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQ-NVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCcccc-ChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            4679999999999999999999999999999999865422 333456677899999999999999999988644      


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ...|+||||+. ++|.+.+...    +++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||++...
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~~----l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  168 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQMD----LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  168 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhhc----CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeC
Confidence            35799999995 5898888653    789999999999999999999999999999999999999999999999998643


Q ss_pred             CC--------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC--------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~--------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..              +|+      ....+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~  218 (353)
T cd07850         169 GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFP  218 (353)
T ss_pred             CCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCC
Confidence            21              111      1123599999999999999999884

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.92  E-value=2.8e-24  Score=206.62  Aligned_cols=178  Identities=30%  Similarity=0.478  Sum_probs=156.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|+..+.||+|++|.||++.+..+++.+++|.+.....   .....+.+|+.+++.++|||++++++++......++++|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e   77 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK---EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVME   77 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch---hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEe
Confidence            47888999999999999999998999999999976532   355778889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-----  461 (489)
                      |+++++|.+++.... ..+++..+..++.|++.||.|||.+|++|+||+|+||+++.++.++|+|||.+......     
T Consensus        78 ~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~  156 (253)
T cd05122          78 FCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNT  156 (253)
T ss_pred             cCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeeccccccccccccccc
Confidence            999999999998753 35899999999999999999999999999999999999999999999999988654321     


Q ss_pred             ---------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ---------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ---------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               |+      .....|+|++|.+++++++|..||.
T Consensus       157 ~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  198 (253)
T cd05122         157 MVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYS  198 (253)
T ss_pred             eecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence                     11      1234699999999999999999885

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.92  E-value=1.2e-24  Score=211.70  Aligned_cols=170  Identities=17%  Similarity=0.164  Sum_probs=141.5

Q ss_pred             cccCCCCceEEEEEEEcCCC----------cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          312 KPLGCGDTGSVHLVELQGAG----------ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg----------~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      +.||+|+||.||+|.+..++          ..+++|.+....    .....+.+|+.+++.++||||+++++++.. ...
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~   75 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH----RDSLAFFETASLMSQLSHKHLVKLYGVCVR-DEN   75 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch----hhHHHHHHHHHHHHcCCCcchhheeeEEec-CCc
Confidence            46899999999999998776          357778765432    115677889999999999999999999887 778


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-------cEEEEecCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-------HVVLTDFDL  454 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-------~vKL~DFGl  454 (489)
                      ++||||+++|+|.+++..... .+++..+..++.||+.||.|||++||+||||||+||+++.++       .+||+|||+
T Consensus        76 ~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~  154 (259)
T cd05037          76 IMVEEYVKFGPLDVFLHREKN-NVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGI  154 (259)
T ss_pred             EEEEEcCCCCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCc
Confidence            999999999999999987643 488999999999999999999999999999999999999888       799999999


Q ss_pred             ccccC-----------CCCce--------eecccccchHHHHHHHHh-CCccc
Q 042772          455 SFMTS-----------CKPQV--------FYHAHVNGFYFIMYKWLT-GYFTY  487 (489)
Q Consensus       455 S~~~~-----------~~~~~--------~~~~~v~s~g~~a~e~~~-G~lpY  487 (489)
                      +....           .+|+.        ...+|+|++|++++++++ |..||
T Consensus       155 a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~  207 (259)
T cd05037         155 PITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPL  207 (259)
T ss_pred             ccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCc
Confidence            87522           12222        223688999999999988 56665

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.92  E-value=1.7e-24  Score=213.14  Aligned_cols=173  Identities=17%  Similarity=0.221  Sum_probs=141.0

Q ss_pred             cccCCCCceEEEEEEEcCC------------CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          312 KPLGCGDTGSVHLVELQGA------------GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~t------------g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      +.||+|+||.||+|.....            ...+++|.+...   .......+..|..+++.++||||+++++++....
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~---~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~   77 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS---HRDISLAFFETASMMRQVSHKHIVLLYGVCVRDV   77 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChh---hhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            4689999999999985432            235888887543   2334556778899999999999999999999988


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc-------EEEEec
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH-------VVLTDF  452 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~-------vKL~DF  452 (489)
                      ..+++|||+++|+|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.       ++++||
T Consensus        78 ~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~  156 (262)
T cd05077          78 ENIMVEEFVEFGPLDLFMHRKS-DVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDP  156 (262)
T ss_pred             CCEEEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCC
Confidence            9999999999999999887643 34899999999999999999999999999999999999987664       899999


Q ss_pred             CCccccC-----------CCCcee-------ecccccchHHHHHHHH-hCCcccC
Q 042772          453 DLSFMTS-----------CKPQVF-------YHAHVNGFYFIMYKWL-TGYFTYV  488 (489)
Q Consensus       453 GlS~~~~-----------~~~~~~-------~~~~v~s~g~~a~e~~-~G~lpY~  488 (489)
                      |++....           .+|+..       ..+|+|++|+++++++ .|..||.
T Consensus       157 g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~  211 (262)
T cd05077         157 GIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLK  211 (262)
T ss_pred             CCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence            9985322           112222       2359999999999997 5888774

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.92  E-value=6e-26  Score=206.98  Aligned_cols=150  Identities=22%  Similarity=0.393  Sum_probs=133.2

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|...+.||+|.||+|++|+...+++.||+|.+..... +...-....+|+-+++.++|.|||++++....+..+-+|+|
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddd-degvpssalreicllkelkhknivrl~dvlhsdkkltlvfe   81 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCC-CCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHH
Confidence            57778999999999999999999999999999865421 12223456789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      || ..+|..+.+... +.++.+.++.++.|++.||.++|+++++||||||.|.||+.+|.+||+|||+|+...
T Consensus        82 ~c-dqdlkkyfdsln-g~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafg  152 (292)
T KOG0662|consen   82 FC-DQDLKKYFDSLN-GDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFG  152 (292)
T ss_pred             Hh-hHHHHHHHHhcC-CcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcC
Confidence            99 569999998764 448999999999999999999999999999999999999999999999999998654

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.92  E-value=8.5e-25  Score=217.10  Aligned_cols=181  Identities=23%  Similarity=0.344  Sum_probs=150.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~l  383 (489)
                      .++|+..+.||+|+||.||++.+..+++.+|+|.+.+...  ......+..|+.++.++. ||||+++++++..+...++
T Consensus         3 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~   80 (288)
T cd06616           3 AEDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVD--EKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWI   80 (288)
T ss_pred             HHHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccC--hHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEE
Confidence            3568888999999999999999999999999999875432  244567788999999985 9999999999999999999


Q ss_pred             EEecCCCCCHHHHH---hhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          384 ITDFCPGGELFALL---DKQPMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L---~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      +|||+. ++|.++.   .......+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++....
T Consensus        81 ~~e~~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  159 (288)
T cd06616          81 CMELMD-ISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLV  159 (288)
T ss_pred             EEeccc-CCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhc
Confidence            999985 4665543   222335589999999999999999999974 99999999999999999999999999985321


Q ss_pred             --------------CCCc---------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 --------------CKPQ---------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------------~~~~---------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    ..|+         ....+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~  211 (288)
T cd06616         160 DSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYP  211 (288)
T ss_pred             cCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCch
Confidence                          1121         2234699999999999999999984

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.92  E-value=1.1e-24  Score=223.37  Aligned_cols=179  Identities=26%  Similarity=0.394  Sum_probs=151.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----  379 (489)
                      .++|++++.||+|+||.||+|.+..+++.||+|.+.+.. ........+..|+.+++.++||||+++++++....     
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccc-cchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            357999999999999999999999999999999986532 23334456778999999999999999999987653     


Q ss_pred             -eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          380 -HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       380 -~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                       ..++||||+ +++|.+++..   ..+++..+..++.|++.||.|||++||+||||||+||+++.++.++|+|||++...
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~  168 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQT  168 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccccc
Confidence             469999999 7899988865   34899999999999999999999999999999999999999999999999998643


Q ss_pred             CC------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..            .|+       ....+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~  217 (343)
T cd07880         169 DSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFK  217 (343)
T ss_pred             ccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            31            122       1234589999999999999999984

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.92  E-value=1.3e-24  Score=215.61  Aligned_cols=172  Identities=19%  Similarity=0.198  Sum_probs=139.4

Q ss_pred             ccCCCCceEEEEEEEcCC------------------------CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCc
Q 042772          313 PLGCGDTGSVHLVELQGA------------------------GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL  368 (489)
Q Consensus       313 ~LG~G~fG~Vy~a~~~~t------------------------g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI  368 (489)
                      .||+|+||.||+|....+                        ...|++|.+...   .......+..|+.+++.++||||
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~---~~~~~~~~~~~~~~~~~l~h~ni   78 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPS---HRDIALAFFETASLMSQVSHIHL   78 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChH---HHHHHHHHHHHHHHHhcCCCCCe
Confidence            589999999999985322                        236888888643   23344567788999999999999


Q ss_pred             ceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC---
Q 042772          369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---  445 (489)
Q Consensus       369 v~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g---  445 (489)
                      +++++++......++||||+++|+|..++.... ..+++..+..++.|++.||.|||++||+||||||+|||+++.+   
T Consensus        79 v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~  157 (274)
T cd05076          79 AFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEK-GRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAE  157 (274)
T ss_pred             eeEEEEEEeCCceEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCccc
Confidence            999999999999999999999999999987543 3478999999999999999999999999999999999998654   


Q ss_pred             ----cEEEEecCCccccC-----------CCCc-------eeecccccchHHHHHHH-HhCCcccC
Q 042772          446 ----HVVLTDFDLSFMTS-----------CKPQ-------VFYHAHVNGFYFIMYKW-LTGYFTYV  488 (489)
Q Consensus       446 ----~vKL~DFGlS~~~~-----------~~~~-------~~~~~~v~s~g~~a~e~-~~G~lpY~  488 (489)
                          .+|++|||++....           ..|+       ....+|+|++|++++++ ..|..||.
T Consensus       158 ~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~  223 (274)
T cd05076         158 GTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLK  223 (274)
T ss_pred             CccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCcc
Confidence                48999999875321           1122       12345899999999998 46888874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=3.5e-24  Score=207.30  Aligned_cols=179  Identities=27%  Similarity=0.389  Sum_probs=157.0

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||+|++|.||++....+++.|++|.+..... .......+..|+++++.++|||++++++++......+++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKI-KEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILE   79 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEeccccc-CHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEe
Confidence            48889999999999999999999999999999976543 23456788999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-----  461 (489)
                      |+++++|.+++...  ..+++..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++......     
T Consensus        80 ~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~  157 (254)
T cd06627          80 YAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDA  157 (254)
T ss_pred             cCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCccccc
Confidence            99999999999875  45899999999999999999999999999999999999999999999999988643321     


Q ss_pred             ----------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          462 ----------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ----------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                |+.      ....|+|++|.+++++++|..||.
T Consensus       158 ~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~  200 (254)
T cd06627         158 SVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYY  200 (254)
T ss_pred             ccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCC
Confidence                      111      134689999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.92  E-value=2e-24  Score=212.82  Aligned_cols=175  Identities=17%  Similarity=0.231  Sum_probs=141.0

Q ss_pred             cccCCCCceEEEEEEEcCC--CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCC
Q 042772          312 KPLGCGDTGSVHLVELQGA--GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~t--g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      +.||+|+||.||++.....  ...+++|.+....  .......+.+|+.+++.++||||+++++.+......|+||||++
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANA--SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCE   78 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCC--ChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCC
Confidence            3699999999999986533  2356667665432  23345678889999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--------
Q 042772          390 GGELFALLDKQP--MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--------  459 (489)
Q Consensus       390 ggsL~~~L~~~~--~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--------  459 (489)
                      +|+|.+++.+..  ...+++..+..++.||+.||.|||+++++||||||+|||++.++.++|+|||++....        
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  158 (268)
T cd05086          79 LGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETE  158 (268)
T ss_pred             CCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcc
Confidence            999999997642  2335677788999999999999999999999999999999999999999999875210        


Q ss_pred             ---------CCCcee-------------ecccccchHHHHHHHHh-CCcccC
Q 042772          460 ---------CKPQVF-------------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ---------~~~~~~-------------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                               .+|+..             ...|+|++|++++++++ |..||.
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~  210 (268)
T cd05086         159 DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYS  210 (268)
T ss_pred             cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCC
Confidence                     113221             24689999999999985 567774

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.92  E-value=9e-25  Score=219.31  Aligned_cols=176  Identities=25%  Similarity=0.383  Sum_probs=150.5

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|.....||+|+||.||+|.+..+++.||+|.+.....   .....+.+|+.+++.++||||+++++++......|++||
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e   98 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ---QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLME   98 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEeccc---chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEe
Confidence            35556689999999999999998999999999865422   234567789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      |+++++|.+++..   ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++....       
T Consensus        99 ~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~  175 (297)
T cd06659          99 FLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRK  175 (297)
T ss_pred             cCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhccccccccc
Confidence            9999999998765   347899999999999999999999999999999999999999999999999875321       


Q ss_pred             --------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 --------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .+|+.      ...+|+|++|++++++++|..||.
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~  218 (297)
T cd06659         176 SLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYF  218 (297)
T ss_pred             ceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                    11111      234599999999999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.92  E-value=2.7e-24  Score=213.51  Aligned_cols=179  Identities=26%  Similarity=0.396  Sum_probs=156.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ...|+..+.||+|++|.||+|.+..++..+++|.+.....    ....+..|+++++.++||||+++++++......|++
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   93 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ----NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVV   93 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch----hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEE
Confidence            3469999999999999999999998899999999975422    456678899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      +||+++++|.+++.... ..+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++.....    
T Consensus        94 ~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  172 (286)
T cd06614          94 MEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSK  172 (286)
T ss_pred             EeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhh
Confidence            99999999999998864 3589999999999999999999999999999999999999999999999998753221    


Q ss_pred             -----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|+.      -...|+|++|++++++++|..||.
T Consensus       173 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~  217 (286)
T cd06614         173 RNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYL  217 (286)
T ss_pred             hccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCC
Confidence                       1111      234699999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=7.3e-25  Score=236.54  Aligned_cols=182  Identities=22%  Similarity=0.301  Sum_probs=140.0

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCC-cEEEEEE--------------eecccccchHHHHHHHHHHHHHHhCCCCCc
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAG-ELYAMKA--------------MEKSVMLNRNKVHRACIEREIMSLLDHPFL  368 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg-~~vAiK~--------------i~~~~~~~~~~~~~~~~E~~il~~l~HpnI  368 (489)
                      ..++|++++.||+|+||+||+|..+... ...+.|.              +.+...........+.+|+.+++.++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            3578999999999999999999865432 2222221              111111222345567889999999999999


Q ss_pred             ceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCC---CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC
Q 042772          369 PTLYASFQTSTHICLITDFCPGGELFALLDKQP---MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       369 v~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~---~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g  445 (489)
                      +++++++......|++|+++ +++|..++....   ........+..++.||+.||.|||++||+||||||+|||++.++
T Consensus       226 v~l~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~  304 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKY-DFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDG  304 (501)
T ss_pred             CcEeEEEEECCeeEEEEecc-ccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC
Confidence            99999999999999999999 568888875432   11234667888999999999999999999999999999999999


Q ss_pred             cEEEEecCCccccCC----------------CCce------eecccccchHHHHHHHHhCCcc
Q 042772          446 HVVLTDFDLSFMTSC----------------KPQV------FYHAHVNGFYFIMYKWLTGYFT  486 (489)
Q Consensus       446 ~vKL~DFGlS~~~~~----------------~~~~------~~~~~v~s~g~~a~e~~~G~lp  486 (489)
                      .+||+|||++.....                .|+.      ....|+|++|++++|+++|..+
T Consensus       305 ~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~  367 (501)
T PHA03210        305 KIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFC  367 (501)
T ss_pred             CEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            999999999964321                1222      1335899999999999988754

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.92  E-value=7.5e-25  Score=223.52  Aligned_cols=177  Identities=18%  Similarity=0.356  Sum_probs=149.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----Ce
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----TH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----~~  380 (489)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|.++..  ........+..|+.+++.++||||+++++++...     ..
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   82 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPF--EHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND   82 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEeccc--ccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence            5799999999999999999999999999999998642  2233456677899999999999999999877544     35


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|++|||++ ++|.+++..   ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++.....
T Consensus        83 ~~lv~e~~~-~~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~  158 (336)
T cd07849          83 VYIVQELME-TDLYKLIKT---QHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADP  158 (336)
T ss_pred             EEEEehhcc-cCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeeccc
Confidence            899999995 589888865   3489999999999999999999999999999999999999999999999999854321


Q ss_pred             ------------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                        +|+.       ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~  211 (336)
T cd07849         159 EHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFP  211 (336)
T ss_pred             cccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                              1221       123589999999999999999884

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.92  E-value=9.4e-25  Score=214.17  Aligned_cols=175  Identities=24%  Similarity=0.296  Sum_probs=145.2

Q ss_pred             cccCCCCceEEEEEEEcCCC------cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          312 KPLGCGDTGSVHLVELQGAG------ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg------~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +.||+|+||.||+|..+...      +.+|+|.+.+..  .......+.+|+.+++.++||||+++++++......+++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGA--TDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIM   78 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhccc--chhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEE
Confidence            36899999999999986544      789999886432  2234567888999999999999999999999989999999


Q ss_pred             ecCCCCCHHHHHhhC-----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-----cEEEEecCCc
Q 042772          386 DFCPGGELFALLDKQ-----PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-----HVVLTDFDLS  455 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~-----~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-----~vKL~DFGlS  455 (489)
                      ||+++++|.+++...     ....+++..+..++.|++.||.|||+++++|+||||+||+++.++     .++|+|||++
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~  158 (269)
T cd05044          79 ELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA  158 (269)
T ss_pred             eccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccc
Confidence            999999999999753     123378899999999999999999999999999999999999887     8999999998


Q ss_pred             cccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          456 FMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       456 ~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .....                 +|+      ....+|+|++|+++++|++ |..||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~  215 (269)
T cd05044         159 RDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYP  215 (269)
T ss_pred             cccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCc
Confidence            53210                 111      1234599999999999997 999884

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.92  E-value=7.4e-25  Score=214.57  Aligned_cols=172  Identities=19%  Similarity=0.235  Sum_probs=142.1

Q ss_pred             cccCCCCceEEEEEEEcCCCc-------EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          312 KPLGCGDTGSVHLVELQGAGE-------LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~-------~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +.||+|+||.||+|....++.       .+|+|.+...   .....+.+..|..+++.++||||+++++++......++|
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv   77 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS---HRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMV   77 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcch---hHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEE
Confidence            469999999999999865543       4888877543   234456778899999999999999999999998899999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc--------EEEEecCCcc
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH--------VVLTDFDLSF  456 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~--------vKL~DFGlS~  456 (489)
                      |||+++|+|.+++..+.. .+++..+..++.||+.||.|||++||+||||||+||+++.++.        ++++|||++.
T Consensus        78 ~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~  156 (258)
T cd05078          78 QEYVKFGSLDTYLKKNKN-LINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI  156 (258)
T ss_pred             EecCCCCcHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEeccccccc
Confidence            999999999999987533 4789999999999999999999999999999999999987764        6999999985


Q ss_pred             ccC-----------CCCce-------eecccccchHHHHHHHHhCC-ccc
Q 042772          457 MTS-----------CKPQV-------FYHAHVNGFYFIMYKWLTGY-FTY  487 (489)
Q Consensus       457 ~~~-----------~~~~~-------~~~~~v~s~g~~a~e~~~G~-lpY  487 (489)
                      ...           .+|+.       ...+|+|++|++++++++|. .||
T Consensus       157 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~  206 (258)
T cd05078         157 TVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPL  206 (258)
T ss_pred             ccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCCh
Confidence            322           12322       22459999999999999984 554

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.92  E-value=1.4e-24  Score=217.05  Aligned_cols=181  Identities=25%  Similarity=0.305  Sum_probs=149.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----  379 (489)
                      .++|++.+.||+|+||.||+|....+++.||+|.+..... .......+.+|+.+++.++||||+++++++....     
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNR   89 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCC-cCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence            4579999999999999999999999999999998864322 1222334567999999999999999999886643     


Q ss_pred             ---eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          380 ---HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       380 ---~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                         ..++||||+. ++|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++.
T Consensus        90 ~~~~~~lv~e~~~-~~l~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  167 (310)
T cd07865          90 YKGSFYLVFEFCE-HDLAGLLSNKN-VKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLAR  167 (310)
T ss_pred             CCceEEEEEcCCC-cCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcc
Confidence               4599999995 58988887643 348999999999999999999999999999999999999999999999999885


Q ss_pred             ccC-------------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          457 MTS-------------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~-------------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...                   .+|+.       ...+|+|++|++++++++|..||.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~  225 (310)
T cd07865         168 AFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQ  225 (310)
T ss_pred             cccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCC
Confidence            331                   11221       124689999999999999998874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.92  E-value=2.7e-24  Score=208.09  Aligned_cols=173  Identities=47%  Similarity=0.773  Sum_probs=152.5

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCH
Q 042772          314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL  393 (489)
Q Consensus       314 LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL  393 (489)
                      ||.|+||.||++.+..+++.+|+|.+.+...........+..|+.+++.++||||+++++.+......|++|||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            68999999999999989999999999876555555677888999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-------------
Q 042772          394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-------------  460 (489)
Q Consensus       394 ~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-------------  460 (489)
                      .+++....  .+++..+..++.|++.||.|||+.+++|+||+|+||+++.++.++|+|||++.....             
T Consensus        81 ~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~  158 (250)
T cd05123          81 FSHLSKEG--RFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPE  158 (250)
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCcc
Confidence            99998753  489999999999999999999999999999999999999999999999999864322             


Q ss_pred             --CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 --KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                        +|+.      ....|+|++|.+++++++|..||.
T Consensus       159 ~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~  194 (250)
T cd05123         159 YLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFY  194 (250)
T ss_pred             ccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence              1111      124688999999999999999985

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.92  E-value=2.9e-24  Score=209.89  Aligned_cols=173  Identities=20%  Similarity=0.228  Sum_probs=140.0

Q ss_pred             cccCCCCceEEEEEEEcC---CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE-eCCeEEEEEec
Q 042772          312 KPLGCGDTGSVHLVELQG---AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ-TSTHICLITDF  387 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~---tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-~~~~~~lVmEy  387 (489)
                      +.||+|+||.||+|.+..   ....+|+|.+...  ........+..|+.+++.++||||+++++++. .+...+++|||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~   78 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRI--TDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPY   78 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCcc--CCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEec
Confidence            468999999999998753   3467999987532  23445677888999999999999999999765 45568999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-------  460 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-------  460 (489)
                      +++|+|.+++..... .+++..+..++.|++.||.|||+.+++||||||+|||++.++.+||+|||+++....       
T Consensus        79 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~  157 (262)
T cd05058          79 MKHGDLRNFIRSETH-NPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVH  157 (262)
T ss_pred             CCCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeec
Confidence            999999999976532 357778888999999999999999999999999999999999999999999863211       


Q ss_pred             ------------CCce------eecccccchHHHHHHHHhC-Cccc
Q 042772          461 ------------KPQV------FYHAHVNGFYFIMYKWLTG-YFTY  487 (489)
Q Consensus       461 ------------~~~~------~~~~~v~s~g~~a~e~~~G-~lpY  487 (489)
                                  +|+.      ...+|+|++|++++++++| ..||
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~  203 (262)
T cd05058         158 NHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPY  203 (262)
T ss_pred             ccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCC
Confidence                        1111      1235899999999999985 5555

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.92  E-value=1.2e-24  Score=222.19  Aligned_cols=179  Identities=23%  Similarity=0.395  Sum_probs=152.0

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----Ce
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----TH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----~~  380 (489)
                      .+|.+.+.||.|+||.||+|.+..+++.||+|.+..... .......+..|+.+++.++||||+++++++...     ..
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFD-NRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEeccccc-ccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            469999999999999999999999999999999875432 233455677899999999999999999987644     35


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|++|||+. ++|.+++...  ..+++..+..++.|++.||.|||+++++||||||+||+++.++.+||+|||++.....
T Consensus        84 ~~lv~e~~~-~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  160 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRSS--QTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSE  160 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCC
Confidence            899999994 7999998765  4489999999999999999999999999999999999999999999999999864321


Q ss_pred             C---------------Cc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 K---------------PQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ~---------------~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .               |+       ....+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  210 (337)
T cd07858         161 KGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFP  210 (337)
T ss_pred             CcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCC
Confidence            1               11       1234699999999999999999884

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.92  E-value=5.9e-24  Score=214.98  Aligned_cols=179  Identities=25%  Similarity=0.324  Sum_probs=153.7

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |...+.||+|+||.||+|.+..+++.|++|.+.............+..|+.+++.++|||++++++++.+....|+||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            67778899999999999999999999999999765444445556788899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--------  459 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--------  459 (489)
                      +. |+|.+++.... ..+++..+..++.|++.||.|||++|++|+||+|+||+++.++.+||+|||++....        
T Consensus       103 ~~-~~l~~~l~~~~-~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~  180 (313)
T cd06633         103 CL-GSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGT  180 (313)
T ss_pred             CC-CCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccCCCCCcccc
Confidence            95 68888886643 358999999999999999999999999999999999999999999999999875322        


Q ss_pred             ---CCCcee---------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ---CKPQVF---------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---~~~~~~---------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                         .+|+..         ..+|+|++|++++++++|..||.
T Consensus       181 ~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~  221 (313)
T cd06633         181 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF  221 (313)
T ss_pred             ccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence               123222         23599999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.92  E-value=1.9e-24  Score=213.18  Aligned_cols=178  Identities=26%  Similarity=0.377  Sum_probs=152.6

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--CeEEEEE
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--THICLIT  385 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~~lVm  385 (489)
                      |++.+.||.|+||.||+|....+++.+|+|.+.... ........+..|+++++.+.|||++++++++...  ...++||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMEN-EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEeccc-ccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEe
Confidence            678899999999999999999999999999998653 2233445677899999999999999999999888  8999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||++ ++|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||++++++.++|+|||++.....     
T Consensus        80 e~~~-~~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~  157 (287)
T cd07840          80 EYMD-HDLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSAD  157 (287)
T ss_pred             cccc-ccHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCccc
Confidence            9996 59999887653 3589999999999999999999999999999999999999999999999998864321     


Q ss_pred             -----------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|+.       ....|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~  203 (287)
T cd07840         158 YTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQ  203 (287)
T ss_pred             ccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCC
Confidence                       1221       123588999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.92  E-value=2.9e-24  Score=212.19  Aligned_cols=173  Identities=26%  Similarity=0.363  Sum_probs=143.8

Q ss_pred             cCccccccc--CCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEE
Q 042772          306 HHFKPIKPL--GCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       306 ~~y~~~~~L--G~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~  382 (489)
                      +.|.+.+.+  |+|+||.||++..+.++..+|+|.+.......        .|......+ +||||++++++|...+..|
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~--------~e~~~~~~~~~h~~iv~~~~~~~~~~~~~   85 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA--------IEPMVHQLMKDNPNFIKLYYSVTTLKGHV   85 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch--------hhHHHHHHhhcCCCEEEEEEEEecCCeeE
Confidence            356666666  99999999999999999999999987542211        122222222 7999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-cEEEEecCCccccCC-
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFDLSFMTSC-  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-~vKL~DFGlS~~~~~-  460 (489)
                      +||||+++++|.+++....  .+++..+..++.|++.||.|||+.|++||||||+||+++.++ .++|+|||++..... 
T Consensus        86 iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~  163 (267)
T PHA03390         86 LIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTP  163 (267)
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCC
Confidence            9999999999999998763  589999999999999999999999999999999999999998 999999998864321 


Q ss_pred             ----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|+.      ....|+|++|.+++++++|..||.
T Consensus       164 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~  207 (267)
T PHA03390        164 SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFK  207 (267)
T ss_pred             ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                      1222      233599999999999999999984

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.92  E-value=2.5e-24  Score=208.87  Aligned_cols=181  Identities=26%  Similarity=0.406  Sum_probs=156.2

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +|++.+.||.|+||.||++.++.+++.+|+|.+...... ......+..|+.+++.++||||+++++++......++|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMS-QKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVME   79 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhcc-HHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEeh
Confidence            488899999999999999999999999999999765432 3445677889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          387 FCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      |+++++|.+++.+.  ....+++..+..++.|++.||.|||+.|++|+||+|.||+++.++.+||+|||++......   
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~  159 (256)
T cd08530          80 YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAK  159 (256)
T ss_pred             hcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccCCcc
Confidence            99999999998762  2245889999999999999999999999999999999999999999999999988644311   


Q ss_pred             ----------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ----------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ----------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                |+      ....+|+|++|.+++++++|..||.
T Consensus       160 ~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~  202 (256)
T cd08530         160 TQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFE  202 (256)
T ss_pred             cccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                      11      1134689999999999999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=6.1e-26  Score=237.33  Aligned_cols=147  Identities=31%  Similarity=0.491  Sum_probs=135.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +.|.++..||.|+||+||+|..+.++...|.|++...   ....+..+.-|++||..++||+||++++.|..++.+||+.
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetk---seEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwili  108 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETK---SEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILI  108 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhccc---chhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEE
Confidence            4588899999999999999999999999999988643   4567888999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      |||.||.....+-.-. .+|.+.++..+++|++.||.|||++.|||||||..|||+.-+|.|+|+|||.|.
T Consensus       109 EFC~GGAVDaimlEL~-r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSA  178 (1187)
T KOG0579|consen  109 EFCGGGAVDAIMLELG-RVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSA  178 (1187)
T ss_pred             eecCCchHhHHHHHhc-cccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccc
Confidence            9999999998887653 569999999999999999999999999999999999999999999999999984

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.92  E-value=1.6e-24  Score=241.42  Aligned_cols=153  Identities=39%  Similarity=0.669  Sum_probs=140.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++++.||.|+||.||+|.+..+++.||+|++.+...........+..|+.++..++||||+++++++....++|+|
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            46799999999999999999999999999999999876555566677888999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      |||+.+++|.+++...  ..+++..++.++.||+.||.|||.++|+||||||+|||++.++.+||+|||+++...
T Consensus        83 mEy~~g~~L~~li~~~--~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~  155 (669)
T cd05610          83 MEYLIGGDVKSLLHIY--GYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTL  155 (669)
T ss_pred             EeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCcccc
Confidence            9999999999999765  348899999999999999999999999999999999999999999999999997543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.92  E-value=6.2e-26  Score=221.66  Aligned_cols=184  Identities=23%  Similarity=0.370  Sum_probs=152.7

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCC----cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-C
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAG----ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-S  378 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg----~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~  378 (489)
                      .+..|+.+..||+|+||.||+|..+.+.    +.+|||.++.... ........++|+.+++.++||||+.+..+|.. +
T Consensus        22 ~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd-~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   22 DLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKD-GTGISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCC-CCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            3567999999999999999999665443    3789998865422 12234567899999999999999999998877 7


Q ss_pred             CeEEEEEecCCCCCHHHHHhhC---CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC----CcEEEEe
Q 042772          379 THICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD----GHVVLTD  451 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~---~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~----g~vKL~D  451 (489)
                      ..+++++||.+. +|.+.++..   ..+.++...+..++.||+.|+.|||++-|+||||||.|||+..+    |.|||+|
T Consensus       101 ~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaD  179 (438)
T KOG0666|consen  101 KKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIAD  179 (438)
T ss_pred             ceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeec
Confidence            889999999965 999998753   22458999999999999999999999999999999999999877    8999999


Q ss_pred             cCCccccCCC--CceeecccccchHHHHHHHHhCCcccCC
Q 042772          452 FDLSFMTSCK--PQVFYHAHVNGFYFIMYKWLTGYFTYVP  489 (489)
Q Consensus       452 FGlS~~~~~~--~~~~~~~~v~s~g~~a~e~~~G~lpY~~  489 (489)
                      ||+++....+  |-+.....|.++.|.+||+++|.-.|+|
T Consensus       180 lGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~  219 (438)
T KOG0666|consen  180 LGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTK  219 (438)
T ss_pred             ccHHHHhhccccccccCCceEEEEEecChHHhcccccccc
Confidence            9999987654  3333445678888999999999888874

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.92  E-value=1.9e-24  Score=213.77  Aligned_cols=179  Identities=21%  Similarity=0.363  Sum_probs=153.6

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |++.+.||.|++|.||+|.++.+|..||+|.+..... .......+.+|+++++.++|||++++++++......|++|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~   79 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETE-DEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEF   79 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccc-cccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEec
Confidence            6788999999999999999999999999999875432 222335677899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--------  459 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--------  459 (489)
                      ++ ++|.+++.......+++..+..++.|++.||.|||+++++|+||+|+||+++.++.++|+|||++....        
T Consensus        80 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~  158 (283)
T cd07835          80 LD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTH  158 (283)
T ss_pred             cC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCc
Confidence            94 699999987654468999999999999999999999999999999999999999999999999985321        


Q ss_pred             -------CCCcee-------ecccccchHHHHHHHHhCCcccC
Q 042772          460 -------CKPQVF-------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -------~~~~~~-------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             .+|+..       ..+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  201 (283)
T cd07835         159 EVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFP  201 (283)
T ss_pred             cccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                   123322       23588999999999999999884

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.92  E-value=5.1e-24  Score=212.26  Aligned_cols=176  Identities=24%  Similarity=0.402  Sum_probs=151.3

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|...+.||+|++|.||++.+..+++.+++|.+...   .......+.+|+.+++.++||||+++++++......++++|
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~---~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e   96 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLR---KQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVME   96 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEecc---chhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEe
Confidence            455667999999999999999989999999988543   22334567889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+++++|.+++..   ..+++..+..++.|++.||.|||++|++||||+|+||+++.++.++|+|||++.....      
T Consensus        97 ~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~  173 (285)
T cd06648          97 FLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRK  173 (285)
T ss_pred             ccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccc
Confidence            9999999999876   3478999999999999999999999999999999999999999999999998753221      


Q ss_pred             ---------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +|+      ....+|+|++|++++++++|..||.
T Consensus       174 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~  216 (285)
T cd06648         174 SLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYF  216 (285)
T ss_pred             cccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCc
Confidence                     111      1234699999999999999999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.92  E-value=1.1e-24  Score=222.14  Aligned_cols=179  Identities=21%  Similarity=0.347  Sum_probs=151.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe----CCeE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT----STHI  381 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----~~~~  381 (489)
                      .+|++.+.||.|+||.||+|..+.+++.||+|.+..... .......+..|+.+++.++||||+++++++..    ...+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFD-VPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccc-cccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            579999999999999999999999999999999875432 23345677789999999999999999988763    3578


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      ++||||+. ++|.+++...  ..+++..+..++.||+.||.|||++||+||||||+||++++++.+||+|||++....  
T Consensus        84 ~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  160 (334)
T cd07855          84 YVVMDLME-SDLHHIIHSD--QPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS  160 (334)
T ss_pred             EEEEehhh-hhHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeeccc
Confidence            99999995 6999998764  348999999999999999999999999999999999999999999999999985321  


Q ss_pred             -----------------CCCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 -----------------CKPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----------------~~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                       .+|+       ....+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~  213 (334)
T cd07855         161 PTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFP  213 (334)
T ss_pred             CcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccC
Confidence                             0122       2234689999999999999999984

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.92  E-value=4.1e-24  Score=210.82  Aligned_cols=176  Identities=21%  Similarity=0.330  Sum_probs=147.0

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeC--CeEEEE
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTS--THICLI  384 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~--~~~~lV  384 (489)
                      |++++.||+|+||.||+|.+..+++.||+|.+++... .... .....|+.++.++. ||||+++++++.+.  +.+++|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~-~~~~-~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv   78 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFK-SLEQ-VNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALV   78 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccC-Cchh-hhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEE
Confidence            6788999999999999999999999999999865432 2222 23346888888885 99999999999887  889999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||++ ++|.+++.... ..+++..+..++.|++.||.|||+.|++||||||+||+++. +.+||+|||++....     
T Consensus        79 ~e~~~-~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~  155 (282)
T cd07831          79 FELMD-MNLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPY  155 (282)
T ss_pred             EecCC-ccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccccccCCCc
Confidence            99996 58888887643 35899999999999999999999999999999999999999 999999999986431     


Q ss_pred             ---------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.       ...+|+|++|++++++++|..||.
T Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~  200 (282)
T cd07831         156 TEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFP  200 (282)
T ss_pred             CCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCC
Confidence                     11221       234689999999999999999884

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.92  E-value=2.1e-24  Score=215.55  Aligned_cols=182  Identities=24%  Similarity=0.316  Sum_probs=152.0

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC----
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST----  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----  379 (489)
                      ..++|++.+.||.|+||.||+|.++.+++.||+|.++.... .......+..|+.+++.++||||+++++++.+..    
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNE-KEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeeccc-ccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            45689999999999999999999999999999999875432 1222345667999999999999999999887654    


Q ss_pred             ------eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecC
Q 042772          380 ------HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFD  453 (489)
Q Consensus       380 ------~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFG  453 (489)
                            .++++|||+++ +|.+++.... ..+++..+..++.|++.||.|||+.||+|+||||+||++++++.+||+|||
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg  161 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESGL-VHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFG  161 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCccc
Confidence                  79999999965 8888877642 358999999999999999999999999999999999999999999999999


Q ss_pred             CccccC----------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          454 LSFMTS----------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       454 lS~~~~----------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ++....                .+|+.       ...+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~  219 (302)
T cd07864         162 LARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQ  219 (302)
T ss_pred             ccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCC
Confidence            886421                11221       134589999999999999998884

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.92  E-value=3.3e-24  Score=220.00  Aligned_cols=178  Identities=25%  Similarity=0.402  Sum_probs=150.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------C
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------T  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------~  379 (489)
                      ++|.+.+.||+|+||.||+|.+..+++.||+|.+.+... .......+.+|+.+++.++||||+++++++...      .
T Consensus        17 ~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (345)
T cd07877          17 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   95 (345)
T ss_pred             CceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcch-hhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccc
Confidence            679999999999999999999999999999999875422 233345677899999999999999999988643      3


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..|++++++ +++|.+++...   .+++..+..++.|++.||.|||++||+||||||+||++++++.+||+|||++....
T Consensus        96 ~~~lv~~~~-~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~  171 (345)
T cd07877          96 DVYLVTHLM-GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD  171 (345)
T ss_pred             cEEEEehhc-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEeccccccccc
Confidence            478899887 78998888653   38999999999999999999999999999999999999999999999999986432


Q ss_pred             C------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 C------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .            +|+.       ....|+|++|++++++++|..||.
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~  219 (345)
T cd07877         172 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFP  219 (345)
T ss_pred             ccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            1            1221       124699999999999999999984

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.92  E-value=3.7e-24  Score=215.34  Aligned_cols=170  Identities=22%  Similarity=0.286  Sum_probs=144.3

Q ss_pred             CceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCHHHHH
Q 042772          318 DTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL  397 (489)
Q Consensus       318 ~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL~~~L  397 (489)
                      ++|.||.+....+++.||+|.+..... .......+..|+.+++.++||||+++++++......+++|||+++|+|.+++
T Consensus        12 ~~~~v~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l   90 (314)
T cd08216          12 DLMIVHLAKHKPTNTLVAVKKINLDSC-SKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLL   90 (314)
T ss_pred             CCceEEEEEecCCCCEEEEEEEecccc-chhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHH
Confidence            445666666677899999999976422 3456678999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------------------
Q 042772          398 DKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------------------  459 (489)
Q Consensus       398 ~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------------------  459 (489)
                      .......+++..+..++.|++.||.|||+++|+||||||+||+++.++.+||+|||.+....                  
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
T cd08216          91 KTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVK  170 (314)
T ss_pred             HHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccc
Confidence            87544558999999999999999999999999999999999999999999999999874221                  


Q ss_pred             ----CCCc--------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ--------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~--------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+        ....+|+|++|++++++++|..||.
T Consensus       171 ~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~  211 (314)
T cd08216         171 NLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFK  211 (314)
T ss_pred             cccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCC
Confidence                1122        1234699999999999999999985

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=2.2e-25  Score=235.20  Aligned_cols=173  Identities=25%  Similarity=0.342  Sum_probs=150.3

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      -+||.|.||+||-|++..|....|||.+...   +...++-+..|+.+-+.|+|.|||+++|++...+++-|.||-+|||
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpek---dsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGG  657 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEK---DSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGG  657 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccc---cchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCC
Confidence            4699999999999999999999999999643   4456778888999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCC--CHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe-cCCcEEEEecCCccccC---------
Q 042772          392 ELFALLDKQPMKIF--REDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-KDGHVVLTDFDLSFMTS---------  459 (489)
Q Consensus       392 sL~~~L~~~~~~~l--~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld-~~g~vKL~DFGlS~~~~---------  459 (489)
                      +|.++|... .+++  .|.+..++..||+.||.|||.+.|||||||-+|||++ -.|.+||+|||.|+.+.         
T Consensus       658 SLSsLLrsk-WGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETF  736 (1226)
T KOG4279|consen  658 SLSSLLRSK-WGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETF  736 (1226)
T ss_pred             cHHHHHHhc-cCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCCcccccc
Confidence            999999875 3456  7899999999999999999999999999999999997 57899999999986332         


Q ss_pred             ------CCC--------ceeecccccchHHHHHHHHhCCcccC
Q 042772          460 ------CKP--------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------~~~--------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            .+|        -+-.++|+|++|+++-||++|..||.
T Consensus       737 TGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~  779 (1226)
T KOG4279|consen  737 TGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFV  779 (1226)
T ss_pred             ccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCee
Confidence                  111        12245688999999999999999884

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.92  E-value=4.3e-24  Score=209.71  Aligned_cols=182  Identities=26%  Similarity=0.381  Sum_probs=151.3

Q ss_pred             CcccccccCCCCceEEEEEEEcC-CCcEEEEEEeecccc-------cchHHHHHHHHHHHHHHh-CCCCCcceeeEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQG-AGELYAMKAMEKSVM-------LNRNKVHRACIEREIMSL-LDHPFLPTLYASFQT  377 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~-tg~~vAiK~i~~~~~-------~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~  377 (489)
                      .|++.+.||+|+||.||+|.+.. +++.+|+|.+.....       ........+..|+.++.. ++||||+++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            48889999999999999999987 788999998864321       123345667788888865 799999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          378 STHICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                      ....+++|||+++++|.+++...  ....+++..++.++.|++.||.|||+ .+++|+||+|+||+++.++.++|+|||+
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~  160 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGL  160 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccc
Confidence            99999999999999999988542  23458999999999999999999996 7899999999999999999999999999


Q ss_pred             ccccCCC--------------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          455 SFMTSCK--------------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       455 S~~~~~~--------------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +......              |+.      -..+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~  214 (269)
T cd08528         161 AKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFY  214 (269)
T ss_pred             eeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCccc
Confidence            8643311              111      123589999999999999999984

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.92  E-value=3.3e-24  Score=213.09  Aligned_cols=180  Identities=41%  Similarity=0.637  Sum_probs=151.8

Q ss_pred             CcccccccCCCCceEEEEEEEc---CCCcEEEEEEeeccccc-chHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVML-NRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~  381 (489)
                      +|++.+.||+|+||.||++...   .++..||+|.+.+.... .......+..|+.++..+ +||||+++++.+......
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            4788999999999999999864   45789999998754322 223445678899999999 599999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ++||||+++|+|.+++...  ..+++..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++..... 
T Consensus        81 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  158 (288)
T cd05583          81 HLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAE  158 (288)
T ss_pred             EEEEecCCCCcHHHHHhhc--CCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccccccc
Confidence            9999999999999998764  3488999999999999999999999999999999999999999999999998754211 


Q ss_pred             ---------------CCc--------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQ--------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~--------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     .|+        .....|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~  209 (288)
T cd05583         159 EEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFT  209 (288)
T ss_pred             cccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcc
Confidence                           111        1234589999999999999999983

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.92  E-value=6e-24  Score=208.89  Aligned_cols=180  Identities=25%  Similarity=0.324  Sum_probs=146.2

Q ss_pred             cccccccCCCCceEEEEEEEc---CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----
Q 042772          308 FKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----  379 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----  379 (489)
                      |++.+.||+|+||.||+|.+.   .+++.||+|.+..... .....+.+.+|+.+++.++||||+++++++....     
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIF-SSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccC-ChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcc
Confidence            677889999999999999865   3578999999965432 3345667888999999999999999999876532     


Q ss_pred             -eEEEEEecCCCCCHHHHHhhC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          380 -HICLITDFCPGGELFALLDKQ----PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       380 -~~~lVmEy~~ggsL~~~L~~~----~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                       ..+++++|+++|+|.+++...    ....++...+..++.|++.||.|||+.||+||||||+||+++.++.+||+|||+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~  159 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGL  159 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECcccc
Confidence             347899999999999887532    112478899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCC-----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          455 SFMTSCK-----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       455 S~~~~~~-----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ++.....                 |+      ....+|+|++|++++++++ |..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~  217 (273)
T cd05074         160 SKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYA  217 (273)
T ss_pred             cccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCC
Confidence            8743210                 11      1224689999999999988 777763

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.92  E-value=7.3e-24  Score=209.30  Aligned_cols=179  Identities=22%  Similarity=0.342  Sum_probs=148.6

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC---CCCCcceeeEEEEeCCe----
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFLPTLYASFQTSTH----  380 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~~~~~----  380 (489)
                      |++.+.||+|+||.||+|.++.+++.||+|.+..... .......+..|+.+++++   +||||+++++++.....    
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~   79 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLS-EEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDREL   79 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccc-cchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCc
Confidence            6788999999999999999998899999999975432 222234455677777665   69999999999988776    


Q ss_pred             -EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          381 -ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       381 -~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                       ++++|||++ ++|.+++.......+++..+..++.|++.||.|||+.+++|+||+|+||+++.++.+||+|||++....
T Consensus        80 ~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~  158 (287)
T cd07838          80 KLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYS  158 (287)
T ss_pred             eeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceecc
Confidence             999999996 589999987654458999999999999999999999999999999999999999999999999986532


Q ss_pred             C--------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 C--------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~--------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .              +|+.      ...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~  207 (287)
T cd07838         159 FEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFR  207 (287)
T ss_pred             CCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCccc
Confidence            1              1111      224689999999999999988873

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.92  E-value=4.2e-24  Score=213.60  Aligned_cols=186  Identities=25%  Similarity=0.381  Sum_probs=153.7

Q ss_pred             CCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEe
Q 042772          299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQT  377 (489)
Q Consensus       299 ~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~  377 (489)
                      ....+..++|++.+.||+|+||.||+|.+..+++.||+|.+++...  ......+..|+.++.++ .||||+++++++..
T Consensus         8 ~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~   85 (296)
T cd06618           8 QKYPADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGN--KEENKRILMDLDVVLKSHDCPYIVKCYGYFIT   85 (296)
T ss_pred             eeccCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCC--hHHHHHHHHHHHHHHhccCCCchHhhheeeec
Confidence            3345667889999999999999999999999999999999975432  22345566677766666 59999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      ....|++|||+ +++|.+++.... ..+++..+..++.|++.||.|||+ .||+||||+|+||++++++.+||+|||++.
T Consensus        86 ~~~~~~v~e~~-~~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~  163 (296)
T cd06618          86 DSDVFICMELM-STCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISG  163 (296)
T ss_pred             CCeEEEEeecc-CcCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccch
Confidence            99999999998 458887776643 358999999999999999999997 599999999999999999999999999985


Q ss_pred             ccC--------------CCCce----------eecccccchHHHHHHHHhCCcccC
Q 042772          457 MTS--------------CKPQV----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~--------------~~~~~----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              .+|+.          ...+|+|++|++++++++|..||.
T Consensus       164 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~  219 (296)
T cd06618         164 RLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYK  219 (296)
T ss_pred             hccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCC
Confidence            322              11221          234689999999999999999985

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.92  E-value=5.7e-24  Score=213.16  Aligned_cols=175  Identities=25%  Similarity=0.404  Sum_probs=149.8

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |.....||+|+||.||++..+.+++.||+|.+...   .......+.+|+.+++.++||||+++++.+......+++|||
T Consensus        22 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   98 (292)
T cd06657          22 LDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLR---KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF   98 (292)
T ss_pred             hhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEeccc---chhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEec
Confidence            44457899999999999999999999999987533   233456688899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-------  460 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-------  460 (489)
                      +++++|.+++...   .+++..+..++.|++.||.|||++|++|+||+|+||++++++.++|+|||++.....       
T Consensus        99 ~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~  175 (292)
T cd06657          99 LEGGALTDIVTHT---RMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS  175 (292)
T ss_pred             CCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccccccc
Confidence            9999999987653   378999999999999999999999999999999999999999999999998753321       


Q ss_pred             --------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 --------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              +|+.      ....|+|++|++++++++|..||.
T Consensus       176 ~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~  217 (292)
T cd06657         176 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYF  217 (292)
T ss_pred             cccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                    1111      124589999999999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.92  E-value=3.8e-24  Score=217.86  Aligned_cols=180  Identities=22%  Similarity=0.289  Sum_probs=150.2

Q ss_pred             cCccc-ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchH-----------HHHHHHHHHHHHHhCCCCCcceeeE
Q 042772          306 HHFKP-IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-----------KVHRACIEREIMSLLDHPFLPTLYA  373 (489)
Q Consensus       306 ~~y~~-~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~-----------~~~~~~~E~~il~~l~HpnIv~l~~  373 (489)
                      ++|.. .+.||.|+||.||+|.++.+++.||+|.+.........           ....+..|+++++.++||||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            35654 57799999999999999999999999998654322100           0124678999999999999999999


Q ss_pred             EEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecC
Q 042772          374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFD  453 (489)
Q Consensus       374 ~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFG  453 (489)
                      ++......+++|||+. |+|.+++...  ..+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||
T Consensus        88 ~~~~~~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg  164 (335)
T PTZ00024         88 VYVEGDFINLVMDIMA-SDLKKVVDRK--IRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFG  164 (335)
T ss_pred             EEecCCcEEEEEeccc-cCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCcc
Confidence            9999999999999996 6999999765  348999999999999999999999999999999999999999999999999


Q ss_pred             CccccC-----------------------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          454 LSFMTS-----------------------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       454 lS~~~~-----------------------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ++....                             .+|+.       ....|+|++|++++++++|..||.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  235 (335)
T PTZ00024        165 LARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFP  235 (335)
T ss_pred             ceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            886433                             11221       223588999999999999999874

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.92  E-value=8.6e-24  Score=213.12  Aligned_cols=181  Identities=23%  Similarity=0.288  Sum_probs=154.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ..|...+.||.|+||.||+|.++.+++.+|+|.+.............+..|+.+++.++|||++++++++......++||
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   94 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEE
Confidence            34888899999999999999999999999999987543334445567788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+. |+|.+++.... ..+++..+..++.|++.||.|||+++++|+||||+||+++.++.++|+|||++.....     
T Consensus        95 e~~~-~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~  172 (308)
T cd06634          95 EYCL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFV  172 (308)
T ss_pred             EccC-CCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCccccc
Confidence            9996 68888776543 3488999999999999999999999999999999999999999999999998864221     


Q ss_pred             ------CCc---------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------KPQ---------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------~~~---------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            +|+         ....+|+|++|++++++++|..||.
T Consensus       173 ~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~  215 (308)
T cd06634         173 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF  215 (308)
T ss_pred             CCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCc
Confidence                  122         1224699999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.92  E-value=4.6e-24  Score=217.60  Aligned_cols=179  Identities=26%  Similarity=0.382  Sum_probs=151.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeC--CeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTS--THI  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~--~~~  381 (489)
                      .++|++.+.||+|+||.||+|.+..+++.+|+|.+.+... .......+..|+.+++++ +||||+++++++...  ...
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~-~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFR-NATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccC-cchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            4679999999999999999999998999999998865322 233445677899999999 999999999988653  468


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+||||++ ++|.+++...   .+++..+..++.||+.||.|||+.||+||||||+||+++.++.+||+|||++..... 
T Consensus        85 ~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~  160 (337)
T cd07852          85 YLVFEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSEL  160 (337)
T ss_pred             EEEecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhccccc
Confidence            99999996 5999988764   478899999999999999999999999999999999999999999999998863321 


Q ss_pred             -------------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                         +|+.       ...+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~  214 (337)
T cd07852         161 EENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFP  214 (337)
T ss_pred             cccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCC
Confidence                               1221       134689999999999999999884

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.91  E-value=2.5e-24  Score=218.36  Aligned_cols=178  Identities=21%  Similarity=0.357  Sum_probs=153.1

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----eE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----HI  381 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----~~  381 (489)
                      +|++.+.||.|+||.||+|....+++.||+|.+.... ......+.+..|+.+++.++||||+++++++....     .+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVF-DDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeecccc-ccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccce
Confidence            5889999999999999999999999999999987542 22344567888999999999999999999987765     79


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      |++|||++ ++|.+++....  .+++..+..++.|++.||.|||++||+|+||||.|||++.++.++|+|||++......
T Consensus        80 ~lv~e~~~-~~l~~~l~~~~--~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~  156 (330)
T cd07834          80 YIVTELME-TDLHKVIKSPQ--PLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPD  156 (330)
T ss_pred             EEEecchh-hhHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeeccc
Confidence            99999996 58999987653  5899999999999999999999999999999999999999999999999998644321


Q ss_pred             ------------------Cc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ------------------PQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ------------------~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                        |+       ....+|+|++|++++++++|..||.
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~  208 (330)
T cd07834         157 EDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFP  208 (330)
T ss_pred             ccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcC
Confidence                              21       1224589999999999999999884

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.91  E-value=5.6e-25  Score=231.70  Aligned_cols=179  Identities=24%  Similarity=0.331  Sum_probs=152.4

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeeccc-ccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe--EEEE
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV-MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH--ICLI  384 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~-~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--~~lV  384 (489)
                      .+....||+|+|-+||+|.+..+|..||--.++-.. ......++++..|+.+|+.|+||||+++|++|.+...  +.+|
T Consensus        42 ~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~i  121 (632)
T KOG0584|consen   42 LKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFI  121 (632)
T ss_pred             eehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeee
Confidence            445678999999999999999999999866554332 2356668999999999999999999999999987755  8899


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEec-CCcEEEEecCCccccC--
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQK-DGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld~-~g~vKL~DFGlS~~~~--  459 (489)
                      +|.+..|+|..|+++...  .+...+..|+.||+.||.|||++.  |+|||||.+||||+. .|.|||+|+|||++..  
T Consensus       122 TEL~TSGtLr~Y~kk~~~--vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s  199 (632)
T KOG0584|consen  122 TELFTSGTLREYRKKHRR--VNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS  199 (632)
T ss_pred             eecccCCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhcc
Confidence            999999999999998743  789999999999999999999985  999999999999974 5899999999996432  


Q ss_pred             ------CCCceee----------cccccchHHHHHHHHhCCcccC
Q 042772          460 ------CKPQVFY----------HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------~~~~~~~----------~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            +.|+.+.          ..||++||-++-||++|.+||.
T Consensus       200 ~aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYs  244 (632)
T KOG0584|consen  200 HAKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYS  244 (632)
T ss_pred             ccceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChh
Confidence                  2233332          2289999999999999999995

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.91  E-value=5.5e-24  Score=210.26  Aligned_cols=178  Identities=28%  Similarity=0.394  Sum_probs=151.3

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEEEe
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      |++.+.||+|++|.||+|....+++.|++|.+......  .......+|+..++.+. ||||+++++++......++|||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   78 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS--WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFE   78 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc--hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEe
Confidence            67889999999999999999999999999998654321  12233456888999998 9999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC------  460 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~------  460 (489)
                      |+ +|+|.+++.......+++..+..++.|++.+|.|||++|++|+||+|+||+++.++.++|+|||++.....      
T Consensus        79 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~  157 (283)
T cd07830          79 YM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTD  157 (283)
T ss_pred             cC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCC
Confidence            99 88999999876544589999999999999999999999999999999999999999999999999864321      


Q ss_pred             --------CCcee-------ecccccchHHHHHHHHhCCcccC
Q 042772          461 --------KPQVF-------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------~~~~~-------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              +|+..       ..+|+|++|.+++++++|..||.
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~  200 (283)
T cd07830         158 YVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFP  200 (283)
T ss_pred             CCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccC
Confidence                    22222       24589999999999999998874

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.91  E-value=6.5e-24  Score=216.50  Aligned_cols=179  Identities=23%  Similarity=0.404  Sum_probs=151.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-CCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-STHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~~~~~l  383 (489)
                      .++|++.+.||.|+||.||+|.+..+++.||+|.+.+... .......+..|+++++.++||||++++++|.. ....++
T Consensus         9 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~l   87 (328)
T cd07856           9 TNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFS-TPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYF   87 (328)
T ss_pred             ccceEEEEeecccCCeEEEEEEECCCCCEEEEEEeccccc-ccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEE
Confidence            4579999999999999999999999999999998865432 23345667789999999999999999999875 457899


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC----
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS----  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~----  459 (489)
                      +|||+ +++|.+++...   .+++..+..++.|++.||.|||++|++|+||+|+||++++++.++|+|||++....    
T Consensus        88 v~e~~-~~~L~~~~~~~---~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~  163 (328)
T cd07856          88 VTELL-GTDLHRLLTSR---PLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMT  163 (328)
T ss_pred             Eeehh-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCCCcC
Confidence            99999 67999888653   37888899999999999999999999999999999999999999999999886332    


Q ss_pred             --------CCCcee-------ecccccchHHHHHHHHhCCcccC
Q 042772          460 --------CKPQVF-------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------~~~~~~-------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              .+|+..       ..+|+|++|++++++++|..||.
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~  207 (328)
T cd07856         164 GYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFP  207 (328)
T ss_pred             CCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                    123322       23588999999999999998873

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.91  E-value=7.3e-24  Score=212.43  Aligned_cols=181  Identities=17%  Similarity=0.173  Sum_probs=136.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCC---CcEEEEEEeecccccchHH--------HHHHHHHHHHHHhCCCCCcceeeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGA---GELYAMKAMEKSVMLNRNK--------VHRACIEREIMSLLDHPFLPTLYA  373 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~t---g~~vAiK~i~~~~~~~~~~--------~~~~~~E~~il~~l~HpnIv~l~~  373 (489)
                      -++|++.+.||+|+||.||+|.+..+   +..+|+|............        ......+...+..++|+|++.+++
T Consensus        11 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   90 (294)
T PHA02882         11 GKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG   90 (294)
T ss_pred             CCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence            35799999999999999999999877   6677877643221110000        011122333455678999999998


Q ss_pred             EEEeCC----eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEE
Q 042772          374 SFQTST----HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVL  449 (489)
Q Consensus       374 ~~~~~~----~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL  449 (489)
                      ++....    ..+++|+++ ..++.+.+...  ...++..+..++.|++.||.|||+++|+||||||+|||++.++.++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l  167 (294)
T PHA02882         91 CGSFKRCRMYYRFILLEKL-VENTKEIFKRI--KCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYI  167 (294)
T ss_pred             eeeEecCCceEEEEEEehh-ccCHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEE
Confidence            765543    457888988 45777777654  23578889999999999999999999999999999999999999999


Q ss_pred             EecCCccccC-----------------C-----CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          450 TDFDLSFMTS-----------------C-----KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       450 ~DFGlS~~~~-----------------~-----~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +|||+|+...                 .     +|      ......|+|++|+++++|++|..||.
T Consensus       168 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~  234 (294)
T PHA02882        168 IDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWK  234 (294)
T ss_pred             EEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999986431                 0     00      11224489999999999999999994

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.91  E-value=5.8e-25  Score=229.68  Aligned_cols=186  Identities=22%  Similarity=0.265  Sum_probs=163.2

Q ss_pred             CCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       299 ~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      +.+++...+......||-|.||.||.|.++.-.-.||+|.++..    .-.++.|..|..+|+-+.|||+|+++++|..+
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED----tMeveEFLkEAAvMKeikHpNLVqLLGVCT~E  335 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHE  335 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc----chhHHHHHHHHHHHHhhcCccHHHHhhhhccC
Confidence            44555666778889999999999999999998899999999754    44678999999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+|||+|||..|+|.+||.+.....++.-..+.++.||..||+||..+++|||||..+|+|+.++..||++|||+|++.
T Consensus       336 pPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlM  415 (1157)
T KOG4278|consen  336 PPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLM  415 (1157)
T ss_pred             CCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhh
Confidence            99999999999999999999987777888888999999999999999999999999999999999999999999999865


Q ss_pred             CCC----------Ccee------------ecccccchHHHHHHHH-hCCcccC
Q 042772          459 SCK----------PQVF------------YHAHVNGFYFIMYKWL-TGYFTYV  488 (489)
Q Consensus       459 ~~~----------~~~~------------~~~~v~s~g~~a~e~~-~G~lpY~  488 (489)
                      ...          |.-|            ..+|||.||+.++|++ .|.-||.
T Consensus       416 tgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYP  468 (1157)
T KOG4278|consen  416 TGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYP  468 (1157)
T ss_pred             cCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCC
Confidence            532          1111            3458899999999986 6888885

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.91  E-value=8.6e-26  Score=252.14  Aligned_cols=180  Identities=27%  Similarity=0.424  Sum_probs=156.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      -+++-...||.|.||.||-|....+|...|+|.+.-... .......+.+|..++..++|||+|++|++-.+...++|.|
T Consensus      1235 ~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~-~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFM 1313 (1509)
T KOG4645|consen 1235 FRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDS-DHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFM 1313 (1509)
T ss_pred             eeeccccccCCcceeeeEEeecCCccchhhhhhhhcCcc-ccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHH
Confidence            357777889999999999999999999999998865433 2555677888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      |||.+|+|.+++...  ...++.....+..|++.|+.|||+.|||||||||+|||++.+|.+|++|||.|.....     
T Consensus      1314 EyC~~GsLa~ll~~g--ri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~ 1391 (1509)
T KOG4645|consen 1314 EYCEGGSLASLLEHG--RIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTM 1391 (1509)
T ss_pred             HHhccCcHHHHHHhc--chhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchhcC
Confidence            999999999999875  3478899999999999999999999999999999999999999999999999964321     


Q ss_pred             --------------CCcee---------ecccccchHHHHHHHHhCCcccC
Q 042772          461 --------------KPQVF---------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------------~~~~~---------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    +|+.+         ..+|+|++|+..-||++|..||.
T Consensus      1392 ~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~ 1442 (1509)
T KOG4645|consen 1392 PGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWA 1442 (1509)
T ss_pred             CHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchh
Confidence                          12222         34488999999999999999985

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.91  E-value=5.8e-24  Score=209.57  Aligned_cols=178  Identities=24%  Similarity=0.385  Sum_probs=152.1

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |++.+.||+|++|.||+|....+++.+++|.++.... .......+..|+.+++.++||||+++++++......+++|||
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   79 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFE-SEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEF   79 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccc-cchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEec
Confidence            5678899999999999999998999999999875532 223456777899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK------  461 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~------  461 (489)
                      ++ ++|.+++.... ..+++..+..++.|++.||.|||+++++|+||||+||+++.++.++|+|||.+......      
T Consensus        80 ~~-~~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~  157 (283)
T cd05118          80 MD-TDLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTH  157 (283)
T ss_pred             cC-CCHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccC
Confidence            96 49998887743 45899999999999999999999999999999999999999999999999987533211      


Q ss_pred             ---------Cc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ---------PQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ---------~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               |+       ....+|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~  200 (283)
T cd05118         158 YVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFP  200 (283)
T ss_pred             ccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCC
Confidence                     11       1234589999999999999998884

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.91  E-value=5.2e-24  Score=213.03  Aligned_cols=181  Identities=22%  Similarity=0.306  Sum_probs=149.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------  378 (489)
                      .++|++.+.||.|+||.||+|.++.+++.+|+|.+......+ .....+.+|+++++.++||||+++++.+...      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   85 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKD-GFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKR   85 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCC-CcchhHHHHHHHHHhcCCCCccchhhheecccccccc
Confidence            568999999999999999999999999999999986543222 1223456799999999999999999887543      


Q ss_pred             --CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          379 --THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       379 --~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                        ..+++||||+. ++|...+.... ..+++..+..++.|++.||.|||++|++|+||||+||++++++.++|+|||++.
T Consensus        86 ~~~~~~lv~~~~~-~~l~~~~~~~~-~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  163 (311)
T cd07866          86 KRGSVYMVTPYMD-HDLSGLLENPS-VKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLAR  163 (311)
T ss_pred             cCceEEEEEecCC-cCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccch
Confidence              35799999995 57887776542 358999999999999999999999999999999999999999999999999986


Q ss_pred             ccCC--------------------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSC--------------------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~--------------------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....                          +|+.       ....|+|++|++++++++|..||.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~  228 (311)
T cd07866         164 PYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQ  228 (311)
T ss_pred             hccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCC
Confidence            4321                          1221       123589999999999999998874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.91  E-value=8.4e-25  Score=231.35  Aligned_cols=184  Identities=23%  Similarity=0.293  Sum_probs=159.0

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCC---CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGA---GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~t---g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      .|..++.++.+.||+|+||.|+.|.|...   ...||+|.+.......  ....|++|+.+|.+|+|||+++|||...+ 
T Consensus       106 lIpee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~--~mddflrEas~M~~L~H~hliRLyGvVl~-  182 (1039)
T KOG0199|consen  106 LIPEEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA--IMDDFLREASHMLKLQHPHLIRLYGVVLD-  182 (1039)
T ss_pred             eccHHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch--hHHHHHHHHHHHHhccCcceeEEeeeecc-
Confidence            45566788899999999999999998742   3478999997665432  67899999999999999999999999887 


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+.+|||+++.|+|.+.|.+.....|.-.....++.||+.||.||.++++|||||..+|+|+...-.|||+|||+.+.+
T Consensus       183 qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaL  262 (1039)
T KOG0199|consen  183 QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRAL  262 (1039)
T ss_pred             chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceecc
Confidence            56899999999999999999865667889999999999999999999999999999999999999999999999999865


Q ss_pred             C------------------CCCcee------ecccccchHHHHHHHH-hCCcccC
Q 042772          459 S------------------CKPQVF------YHAHVNGFYFIMYKWL-TGYFTYV  488 (489)
Q Consensus       459 ~------------------~~~~~~------~~~~v~s~g~~a~e~~-~G~lpY~  488 (489)
                      .                  |.|+.+      ..+|+|.||++++||. .|..||.
T Consensus       263 g~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~  317 (1039)
T KOG0199|consen  263 GENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWV  317 (1039)
T ss_pred             CCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCC
Confidence            5                  233322      3559999999999995 7888884

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.91  E-value=3.3e-24  Score=224.49  Aligned_cols=183  Identities=21%  Similarity=0.271  Sum_probs=154.3

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCC----CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGA----GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~t----g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      .+......+.+.||.|.||-||.|.+...    .--||+|..+...  ..+..+.|..|..+|+.++||||++++|.+..
T Consensus       385 el~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~--t~d~tekflqEa~iMrnfdHphIikLIGv~~e  462 (974)
T KOG4257|consen  385 ELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDC--TPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE  462 (974)
T ss_pred             eeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCC--ChhhHHHHHHHHHHHHhCCCcchhheeeeeec
Confidence            44445567778899999999999987532    3478899887643  34457889999999999999999999999976


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      . ..|||||.++-|.|..||..+.. .++......++.||+.||.|||+..+|||||..+|||+.+..-|||+|||+|+-
T Consensus       463 ~-P~WivmEL~~~GELr~yLq~nk~-sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~  540 (974)
T KOG4257|consen  463 Q-PMWIVMELAPLGELREYLQQNKD-SLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRY  540 (974)
T ss_pred             c-ceeEEEecccchhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhh
Confidence            5 59999999999999999998754 489999999999999999999999999999999999999999999999999985


Q ss_pred             cCCC----------------Cce------eecccccchHHHHHHH-HhCCcccC
Q 042772          458 TSCK----------------PQV------FYHAHVNGFYFIMYKW-LTGYFTYV  488 (489)
Q Consensus       458 ~~~~----------------~~~------~~~~~v~s~g~~a~e~-~~G~lpY~  488 (489)
                      ....                |+.      ...+|||.||++++|+ ++|.-||-
T Consensus       541 ~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfq  594 (974)
T KOG4257|consen  541 LEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQ  594 (974)
T ss_pred             ccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccc
Confidence            5421                111      2456999999999997 59999983

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.91  E-value=7.9e-24  Score=208.52  Aligned_cols=178  Identities=26%  Similarity=0.400  Sum_probs=152.1

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |+..+.||+|++|.||+|....+++.||+|.+.... ........+..|+.+++.++||||+++++++......++||||
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDN-EEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEecccc-ccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecC
Confidence            567788999999999999999999999999997653 1233345677899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-------  460 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-------  460 (489)
                      ++ ++|.+++.... ..+++..+..++.|++.||.|||++||+|+||+|+||++++++.++|+|||++.....       
T Consensus        80 ~~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~  157 (282)
T cd07829          80 CD-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTH  157 (282)
T ss_pred             cC-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCccccCc
Confidence            97 59999998753 3489999999999999999999999999999999999999999999999998863321       


Q ss_pred             --------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 --------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              +|+.       ....|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~  200 (282)
T cd07829         158 EVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFP  200 (282)
T ss_pred             cccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCC
Confidence                    1221       123589999999999999998874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.91  E-value=8.1e-24  Score=216.74  Aligned_cols=176  Identities=24%  Similarity=0.426  Sum_probs=147.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-------  378 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-------  378 (489)
                      .+|++.+.||.|+||.||+|.+..+++.||+|.+....   ....+.+.+|+++++.++||||+++++++...       
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~---~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTD---PQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTED   81 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCC---CchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccc
Confidence            57999999999999999999999999999999986543   23456677899999999999999999776543       


Q ss_pred             -------CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe-cCCcEEEE
Q 042772          379 -------THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-KDGHVVLT  450 (489)
Q Consensus       379 -------~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld-~~g~vKL~  450 (489)
                             ...|+||||++ ++|.+++...   .+++..++.++.||+.||.|||++|++||||||+||+++ +++.+||+
T Consensus        82 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~  157 (342)
T cd07854          82 VGSLTELNSVYIVQEYME-TDLANVLEQG---PLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIG  157 (342)
T ss_pred             cccccccceEEEEeeccc-ccHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEEC
Confidence                   35899999996 5999888653   488999999999999999999999999999999999997 45678999


Q ss_pred             ecCCccccC------------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          451 DFDLSFMTS------------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       451 DFGlS~~~~------------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      |||++....                  .+|+.       ...+|+|++|++++++++|..||.
T Consensus       158 dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~  220 (342)
T cd07854         158 DFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFA  220 (342)
T ss_pred             CcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCC
Confidence            999985321                  11221       124689999999999999999984

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.91  E-value=7.8e-24  Score=216.93  Aligned_cols=179  Identities=25%  Similarity=0.421  Sum_probs=152.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH----  380 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~----  380 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+.... ........+..|+.+++.++||||+++++++.....    
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPF-QSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEeccccc-chhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            357999999999999999999999999999999886542 223345667789999999999999999988766544    


Q ss_pred             --EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          381 --ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       381 --~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                        .++|+||+ +++|.+++..   ..+++..+..++.|++.||.|||++||+|+||||+||+++.++.++|+|||++...
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~  168 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHT  168 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccc
Confidence              89999999 6799999876   34899999999999999999999999999999999999999999999999998643


Q ss_pred             CC------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          459 SC------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..            +|+.       ...+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~  217 (343)
T cd07851         169 DDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFP  217 (343)
T ss_pred             cccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence            21            1211       134699999999999999999984

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.91  E-value=1.9e-23  Score=212.83  Aligned_cols=178  Identities=21%  Similarity=0.312  Sum_probs=146.7

Q ss_pred             CcccccccCCCCceEEEEEEEcCC--CcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEe----CC
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGA--GELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQT----ST  379 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~t--g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~----~~  379 (489)
                      +|++.+.||+|+||.||++.+..+  +..||+|.+.... ......+.+..|+.+++.+ +||||+++++.+..    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~   79 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVF-SKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFN   79 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEecccc-ccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCC
Confidence            488899999999999999999988  8999999986432 2233356677899999998 59999999987543    24


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .++++|+|+. ++|.+++...  ..+++..+..++.||+.||.|||++|++||||||+||+++.++.+||+|||++....
T Consensus        80 ~~~~~~e~~~-~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~  156 (332)
T cd07857          80 ELYLYEELME-ADLHQIIRSG--QPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFS  156 (332)
T ss_pred             cEEEEEeccc-CCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecc
Confidence            6889999984 6999998764  448999999999999999999999999999999999999999999999999986321


Q ss_pred             -------------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 -------------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -------------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                         .+|+.       ...+|+|++|++++++++|..||.
T Consensus       157 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~  211 (332)
T cd07857         157 ENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFK  211 (332)
T ss_pred             cccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCC
Confidence                               11221       123488999999999999998874

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.91  E-value=6e-25  Score=210.98  Aligned_cols=181  Identities=24%  Similarity=0.373  Sum_probs=148.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHh-CCCCCcceeeEEEEeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL-LDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      .++.+-+..||.|+||+|++..++.+|+..|+|.+....  .....++++.|.+...+ -+.||||++||+...++..|+
T Consensus        63 ~~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n--~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWi  140 (361)
T KOG1006|consen   63 SDNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNN--IEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWI  140 (361)
T ss_pred             cchHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeecc--chHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceee
Confidence            456677889999999999999999999999999997653  34556778888887554 579999999999999999999


Q ss_pred             EEecCCCCCHHHHHhh---CCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          384 ITDFCPGGELFALLDK---QPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~---~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .||.| ..+|..+-+.   -....++|..+..+....+.||.||-. ..|+|||+||+|||++..|.|||||||++-.+.
T Consensus       141 CMELM-d~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv  219 (361)
T KOG1006|consen  141 CMELM-DISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLV  219 (361)
T ss_pred             eHHHH-hhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHH
Confidence            99999 5677655432   233458999999999999999999985 589999999999999999999999999974211


Q ss_pred             ----------C----CCcee--------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------C----KPQVF--------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~----~~~~~--------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                |    +|+.+        -.+++||+|.+++|.++|..||.
T Consensus       220 ~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr  270 (361)
T KOG1006|consen  220 DSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYR  270 (361)
T ss_pred             HHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcc
Confidence                      1    22222        34588999999999999999984

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.3e-23  Score=218.19  Aligned_cols=179  Identities=21%  Similarity=0.298  Sum_probs=149.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~l  383 (489)
                      -..|++++.||+|+.+.||++...+ .+.||+|.+... ..+...+.-++.|+.+|.+|+ |.+|+.+|++-..++.+|+
T Consensus       360 g~~Yeilk~iG~GGSSkV~kV~~s~-~~iyalkkv~~~-~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYm  437 (677)
T KOG0596|consen  360 GREYEILKQIGSGGSSKVFKVLNSD-KQIYALKKVVLL-EADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYM  437 (677)
T ss_pred             cchhhHHHhhcCCCcceeeeeecCC-CcchhhhHHHHh-hcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEE
Confidence            3579999999999999999998765 455666655332 235667889999999999995 9999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      ||||= ..+|...|.+.... .+...+++++.||+.|+.++|+.||||.||||.|+|+- .|.+||+|||+|.....   
T Consensus       438 vmE~G-d~DL~kiL~k~~~~-~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTT  514 (677)
T KOG0596|consen  438 VMECG-DIDLNKILKKKKSI-DPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTT  514 (677)
T ss_pred             Eeecc-cccHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEE-eeeEEeeeechhcccCcccc
Confidence            99965 67999999886443 45568999999999999999999999999999999984 78999999999853221   


Q ss_pred             -------------------------------CCceeecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------------------------KPQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------------------------~~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                                     .-..-.++|+|++|+++|+|+.|..||.
T Consensus       515 sI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~  573 (677)
T KOG0596|consen  515 SIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFG  573 (677)
T ss_pred             ceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchH
Confidence                                           0113356799999999999999999995

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.90  E-value=1.7e-23  Score=202.85  Aligned_cols=162  Identities=28%  Similarity=0.368  Sum_probs=136.1

Q ss_pred             CCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCHHHH
Q 042772          317 GDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFAL  396 (489)
Q Consensus       317 G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL~~~  396 (489)
                      |.+|.||+|.++.+++.||+|.+.+...        ...|...+....||||+++++++......+++|||+++|+|.++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   75 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE--------YSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSH   75 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh--------hhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHH
Confidence            8999999999999999999999975421        22344445556799999999999999999999999999999999


Q ss_pred             HhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------------CCCce
Q 042772          397 LDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------------CKPQV  464 (489)
Q Consensus       397 L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------------~~~~~  464 (489)
                      +....  .+++..+..++.|++.||.|||++|++||||||+||+++.++.++++|||++....            ..|+.
T Consensus        76 l~~~~--~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~  153 (237)
T cd05576          76 ISKFL--NIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEV  153 (237)
T ss_pred             HHHhc--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCcc
Confidence            97753  38999999999999999999999999999999999999999999999999764221            12222


Q ss_pred             ------eecccccchHHHHHHHHhCCcccC
Q 042772          465 ------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       465 ------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            ...+|+|++|++++++++|..|+.
T Consensus       154 ~~~~~~~~~~DvwslG~il~el~~g~~~~~  183 (237)
T cd05576         154 GGISEETEACDWWSLGAILFELLTGKTLVE  183 (237)
T ss_pred             cCCCCCCchhhHHHHHHHHHHHHHCcchhh
Confidence                  234699999999999999987653

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.90  E-value=1.9e-23  Score=213.98  Aligned_cols=177  Identities=25%  Similarity=0.405  Sum_probs=148.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST------  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~------  379 (489)
                      .+|.+.+.||+|+||.||+|.+..+|+.||+|.+.+... .......+..|+.+++.++||||+++++++....      
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQ-SEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccc-cccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            579999999999999999999999999999999865422 2223456778999999999999999999887542      


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++||||+. .+|..++.    ..+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||++....
T Consensus        94 ~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~  168 (342)
T cd07879          94 DFYLVMPYMQ-TDLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHAD  168 (342)
T ss_pred             eEEEEecccc-cCHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCC
Confidence            4699999995 47777653    237899999999999999999999999999999999999999999999999986432


Q ss_pred             ------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .+|+.       ...+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~  216 (342)
T cd07879         169 AEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFK  216 (342)
T ss_pred             CCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCC
Confidence                        12222       224689999999999999999984

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.90  E-value=2.2e-23  Score=203.73  Aligned_cols=181  Identities=26%  Similarity=0.404  Sum_probs=148.8

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc--chHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML--NRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +|.+.+.||+|+||.||++.+..++..+++|+++.....  .......+..|..+++.++||||+++++++......+++
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            588899999999999999999887777777776543221  222344566789999999999999999999988899999


Q ss_pred             EecCCCCCHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          385 TDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~--~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      |||+++++|.+++..  .....+++..+..++.|++.||.|||++|++|+||||+||+++. +.++|+|||++.....  
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~  159 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSC  159 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeecCCCc
Confidence            999999999998864  22345899999999999999999999999999999999999975 6799999998864321  


Q ss_pred             -------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+.      ....|+|++|.+++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~  206 (260)
T cd08222         160 DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFE  206 (260)
T ss_pred             ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                         1111      123689999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=3.8e-24  Score=238.07  Aligned_cols=178  Identities=25%  Similarity=0.374  Sum_probs=143.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-------  377 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------  377 (489)
                      ..+|+.++.||+|+||.||+++.+-+|+.||||.|.-..  ......++.+|+.+|.+|+|||||++|.+|..       
T Consensus       478 ~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~--s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~  555 (1351)
T KOG1035|consen  478 LNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA--SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTV  555 (1351)
T ss_pred             hhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch--HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCcccc
Confidence            567999999999999999999999999999999997543  45566788899999999999999999987700       


Q ss_pred             --------------------------------------------------------------------------------
Q 042772          378 --------------------------------------------------------------------------------  377 (489)
Q Consensus       378 --------------------------------------------------------------------------------  377 (489)
                                                                                                      
T Consensus       556 ~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~  635 (1351)
T KOG1035|consen  556 LEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSD  635 (1351)
T ss_pred             ccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccc
Confidence                                                                                            


Q ss_pred             ------------------------C--------CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042772          378 ------------------------S--------THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH  425 (489)
Q Consensus       378 ------------------------~--------~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH  425 (489)
                                              +        ..+||-||||+...|.++++++... -....++.++.||+.||.|+|
T Consensus       636 ~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~-~~~d~~wrLFreIlEGLaYIH  714 (1351)
T KOG1035|consen  636 SEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFN-SQRDEAWRLFREILEGLAYIH  714 (1351)
T ss_pred             cCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHHH
Confidence                                    0        2368999999987788887775321 147889999999999999999


Q ss_pred             HCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----------------CCCceeecccccchHHHHHHHHhCCc
Q 042772          426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVFYHAHVNGFYFIMYKWLTGYF  485 (489)
Q Consensus       426 ~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----------------~~~~~~~~~~v~s~g~~a~e~~~G~l  485 (489)
                      ++|||||||||.|||+++++.|||+|||+|+...                 ..+..-....+++.-|.+||++-+..
T Consensus       715 ~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~  791 (1351)
T KOG1035|consen  715 DQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTS  791 (1351)
T ss_pred             hCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccc
Confidence            9999999999999999999999999999997511                 11111233355666677777665544

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.90  E-value=3.2e-23  Score=214.03  Aligned_cols=143  Identities=22%  Similarity=0.194  Sum_probs=115.6

Q ss_pred             cccCcccccccCCCCceEEEEEEEcC-CCcEEEEEEeecccc--cchHHHHHHHHHHHHHHhCCCCCcce-eeEEEEeCC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQG-AGELYAMKAMEKSVM--LNRNKVHRACIEREIMSLLDHPFLPT-LYASFQTST  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~-tg~~vAiK~i~~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~-l~~~~~~~~  379 (489)
                      ..++|.+.+.||+|+||+||+|.++. +++.+|+|.+.....  ........+.+|+++|+.++|+|++. +++.    .
T Consensus        16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~----~   91 (365)
T PRK09188         16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT----G   91 (365)
T ss_pred             ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc----C
Confidence            34679999999999999999999876 678889998753311  12334567889999999999999985 5432    4


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCC-CCCCEEEecCCcEEEEecCCcccc
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDL-KPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDL-KP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..|+||||++|++|.. +.  ..   .   ...++.|++.||.|||++||+|||| ||+|||++.++.+||+|||+|+..
T Consensus        92 ~~~LVmE~~~G~~L~~-~~--~~---~---~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~  162 (365)
T PRK09188         92 KDGLVRGWTEGVPLHL-AR--PH---G---DPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVF  162 (365)
T ss_pred             CcEEEEEccCCCCHHH-hC--cc---c---hHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceec
Confidence            5899999999999963 21  11   1   1457889999999999999999999 999999999999999999999865


Q ss_pred             C
Q 042772          459 S  459 (489)
Q Consensus       459 ~  459 (489)
                      .
T Consensus       163 ~  163 (365)
T PRK09188        163 R  163 (365)
T ss_pred             c
Confidence            4

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.89  E-value=1e-23  Score=226.41  Aligned_cols=178  Identities=25%  Similarity=0.294  Sum_probs=152.8

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCc----EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGE----LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~----~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ..+..++||+|+||+||+|.+-..|+    +||+|++...  ........+..|+-+|..++|||++++++++..+. +.
T Consensus       697 elkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~--t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~q  773 (1177)
T KOG1025|consen  697 ELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF--TSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQ  773 (1177)
T ss_pred             hhhhhceeccccceeEEeeeEecCCceecceeEEEEeecc--CCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HH
Confidence            36677899999999999999876665    6788877544  34555678889999999999999999999998776 89


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-  461 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-  461 (489)
                      ||++|+++|+|.++++.+.. .+-....+.|..||+.||.|||.+++|||||..+|||+.+-.++||+|||+|+.+... 
T Consensus       774 lvtq~mP~G~LlDyvr~hr~-~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~  852 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVREHRD-NIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDE  852 (1177)
T ss_pred             HHHHhcccchHHHHHHHhhc-cccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCccc
Confidence            99999999999999998754 4778888999999999999999999999999999999999999999999999866522 


Q ss_pred             ----------------------CceeecccccchHHHHHHHH-hCCcccC
Q 042772          462 ----------------------PQVFYHAHVNGFYFIMYKWL-TGYFTYV  488 (489)
Q Consensus       462 ----------------------~~~~~~~~v~s~g~~a~e~~-~G~lpY~  488 (489)
                                            +.+...+|||+||++.+|++ +|.-||.
T Consensus       853 ~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~  902 (1177)
T KOG1025|consen  853 KEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYD  902 (1177)
T ss_pred             ccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccC
Confidence                                  22234569999999999975 8999986

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=7.7e-25  Score=210.70  Aligned_cols=178  Identities=23%  Similarity=0.395  Sum_probs=142.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----e
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----H  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----~  380 (489)
                      .+.+..+.||-|+||.||.+.+..+|+.||+|.+..- ..+-...+++.+|..+|..++|.|++..++..+...     .
T Consensus        53 ~Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnv-fq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqE  131 (449)
T KOG0664|consen   53 QDIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNV-FQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQE  131 (449)
T ss_pred             ccCCCCCcccccceeEEEeccCCCCccchhHhhcchH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHH
Confidence            3577789999999999999999999999999988543 233345678889999999999999999998776543     4


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+++|.+ ..+|...+-.-  ..++.+.+..+++||++||.|||+.+|+||||||.|.|+++|..+||||||+++....
T Consensus       132 iYV~TELm-QSDLHKIIVSP--Q~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~  208 (449)
T KOG0664|consen  132 LYVLTELM-QSDLHKIIVSP--QALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQ  208 (449)
T ss_pred             HHHHHHHH-HhhhhheeccC--CCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccch
Confidence            78889988 55888777553  5589999999999999999999999999999999999999999999999999986653


Q ss_pred             CCceeecccccchHHHHHHHHhCCccc
Q 042772          461 KPQVFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       461 ~~~~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      .....+.-.|.+-+|.+||++.|...|
T Consensus       209 d~~~hMTqEVVTQYYRAPEiLMGaRhY  235 (449)
T KOG0664|consen  209 RDRLNMTHEVVTQYYRAPELLMGARRY  235 (449)
T ss_pred             hhhhhhHHHHHHHHhccHHHhhcchhh
Confidence            333333334445555555555555444

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.89  E-value=3.4e-23  Score=212.03  Aligned_cols=172  Identities=27%  Similarity=0.353  Sum_probs=146.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHh--CCCCCcceeeEEEEeCC---
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTLYASFQTST---  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~~~~---  379 (489)
                      +...++.+.||+|.||.||+|.+.  ++.||||++..      ...+.+..|..|.+.  +.|+||+.+++.-....   
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~--~~~VAVKifp~------~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~  280 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLD--NRLVAVKIFPE------QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADR  280 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhcc--CceeEEEecCH------HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccc
Confidence            567888999999999999999987  58999999853      345778889999875  58999999998765444   


Q ss_pred             -eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH---------CCCeecCCCCCCEEEecCCcEEE
Q 042772          380 -HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC---------LGIIYRDLKPENILLQKDGHVVL  449 (489)
Q Consensus       380 -~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~---------~gIvHrDLKP~NILld~~g~vKL  449 (489)
                       .++||++|.+.|+|.+||+.+   ++++.....++..|++||+|||+         ..|+|||||.+|||+.+|+++.|
T Consensus       281 ~eywLVt~fh~kGsL~dyL~~n---tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccI  357 (534)
T KOG3653|consen  281 MEYWLVTEFHPKGSLCDYLKAN---TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCI  357 (534)
T ss_pred             cceeEEeeeccCCcHHHHHHhc---cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEe
Confidence             799999999999999999984   47999999999999999999995         36999999999999999999999


Q ss_pred             EecCCccccC-CCCceeecccccchHHHHHHHHhCCccc
Q 042772          450 TDFDLSFMTS-CKPQVFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       450 ~DFGlS~~~~-~~~~~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      +|||+|.... ..++--....|++..|++||++-|.+=|
T Consensus       358 aDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl  396 (534)
T KOG3653|consen  358 ADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINL  396 (534)
T ss_pred             eccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhccc
Confidence            9999997665 2333334457888889999998887643

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.89  E-value=4e-22  Score=188.78  Aligned_cols=178  Identities=38%  Similarity=0.606  Sum_probs=154.3

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |.+.+.||.|++|.||++....+++.+++|.+......  ...+.+..|++.++.++|+|++++++++......++++||
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~   78 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE--KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEY   78 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch--HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEec
Confidence            56778999999999999999988999999999765322  2567888899999999999999999999988999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK------  461 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~------  461 (489)
                      +++++|.+++...... +++..+..++.+++.++.+||+.+++|+||+|.||+++.++.++|+|||++......      
T Consensus        79 ~~~~~L~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~  157 (225)
T smart00221       79 CEGGDLFDYLRKKGGK-LSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLK  157 (225)
T ss_pred             cCCCCHHHHHHhcccC-CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccccccc
Confidence            9999999999875321 789999999999999999999999999999999999999999999999988654321      


Q ss_pred             ----------Ccee-------ecccccchHHHHHHHHhCCcccC
Q 042772          462 ----------PQVF-------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ----------~~~~-------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                |+..       ...|+|++|++++++++|..||.
T Consensus       158 ~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~  201 (225)
T smart00221      158 TVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFS  201 (225)
T ss_pred             ceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCcc
Confidence                      2211       35688999999999999999994

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.89  E-value=8.1e-23  Score=216.14  Aligned_cols=174  Identities=28%  Similarity=0.375  Sum_probs=147.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ...|.+...+|.|+|+.|..+.+..+++.+++|++.+....       ...|+.++... +||||+++.+.+.+..+.|+
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~-------~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~  393 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADD-------NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYL  393 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccccc-------cccccchhhhhcCCCcceeecceecCCceeee
Confidence            56799999999999999999999999999999999876221       22366565554 79999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE-ecCCcEEEEecCCccccC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL-QKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl-d~~g~vKL~DFGlS~~~~---  459 (489)
                      |||.+.|+.|.+.+...+.   ....+..|+++|+.|+.|||++|+|||||||+|||+ +..|+++|+|||.++...   
T Consensus       394 v~e~l~g~ell~ri~~~~~---~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~  470 (612)
T KOG0603|consen  394 VMELLDGGELLRRIRSKPE---FCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSC  470 (612)
T ss_pred             eehhccccHHHHHHHhcch---hHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchhh
Confidence            9999999999988877533   337788899999999999999999999999999999 699999999999986443   


Q ss_pred             ---------CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               ++|+      +....|.||+|..+|+|++|..||.
T Consensus       471 ~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~  514 (612)
T KOG0603|consen  471 DTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFA  514 (612)
T ss_pred             cccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccc
Confidence                     2222      2244599999999999999999985

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=4e-23  Score=209.37  Aligned_cols=183  Identities=28%  Similarity=0.379  Sum_probs=153.8

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccc----cchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM----LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-  378 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~----~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  378 (489)
                      ..++|-++..||+|+|+.||+|.+....+.||+|+-....-    ...+..+..++|..|-+.|+||.||++|++|.-+ 
T Consensus       461 Ln~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDt  540 (775)
T KOG1151|consen  461 LNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDT  540 (775)
T ss_pred             hHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecc
Confidence            34679999999999999999999998899999997643221    1344567788999999999999999999999754 


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC--CCeecCCCCCCEEEe---cCCcEEEEecC
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL--GIIYRDLKPENILLQ---KDGHVVLTDFD  453 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~--gIvHrDLKP~NILld---~~g~vKL~DFG  453 (489)
                      ..+|-|+|||+|-+|.-||+.+  +..++.+++.|+.||+.||.||...  -|||-||||.|||+-   .-|.|||+|||
T Consensus       541 dsFCTVLEYceGNDLDFYLKQh--klmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFG  618 (775)
T KOG1151|consen  541 DSFCTVLEYCEGNDLDFYLKQH--KLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFG  618 (775)
T ss_pred             ccceeeeeecCCCchhHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecc
Confidence            5789999999999999999987  4489999999999999999999976  599999999999995   34789999999


Q ss_pred             CccccC---------------CCCcee-----------------ecccccchHHHHHHHHhCCcccC
Q 042772          454 LSFMTS---------------CKPQVF-----------------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       454 lS~~~~---------------~~~~~~-----------------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +|....               .+..+|                 ...|||+.|++.|.-+.|.-||.
T Consensus       619 LSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFG  685 (775)
T KOG1151|consen  619 LSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFG  685 (775)
T ss_pred             hhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCC
Confidence            996432               112222                 33489999999999999999986

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.88  E-value=4.3e-23  Score=206.72  Aligned_cols=179  Identities=23%  Similarity=0.332  Sum_probs=152.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-C-C----CcceeeEEEEeC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-H-P----FLPTLYASFQTS  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-H-p----nIv~l~~~~~~~  378 (489)
                      ..+|.++..+|+|+||+|-.+.+..++..||+|+++..    ....+....|+.+|.++. + |    -++.+.++|...
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V----~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyr  163 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV----DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYR  163 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH----HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhcc
Confidence            57899999999999999999999999999999998643    334455677999999984 2 3    367888889999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---------------
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---------------  443 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---------------  443 (489)
                      ++.|||+|.+ |.+++++|..+...+++..+++.++.|++.++++||+.+++|-||||+|||+-+               
T Consensus       164 ghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~  242 (415)
T KOG0671|consen  164 GHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCF  242 (415)
T ss_pred             CceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccce
Confidence            9999999988 779999999988888999999999999999999999999999999999999842               


Q ss_pred             -----CCcEEEEecCCccccCCC------------Ccee------ecccccchHHHHHHHHhCCcccC
Q 042772          444 -----DGHVVLTDFDLSFMTSCK------------PQVF------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       444 -----~g~vKL~DFGlS~~~~~~------------~~~~------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           +..|+|+|||.|+.....            |+++      .+.|+||+|+++.|+.+|..+|-
T Consensus       243 ~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFq  310 (415)
T KOG0671|consen  243 IRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQ  310 (415)
T ss_pred             eccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecc
Confidence                 236899999999754422            2222      45699999999999999998874

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.88  E-value=2.8e-22  Score=217.46  Aligned_cols=178  Identities=24%  Similarity=0.382  Sum_probs=151.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEe-----CC
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQT-----ST  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~-----~~  379 (489)
                      +-|.+.+.||.|.+|.||++..+.+++.+|+|++.....    .-..+..|..+++.+ +|||++.+|++|..     .+
T Consensus        19 d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d----~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~D   94 (953)
T KOG0587|consen   19 DIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED----EEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGD   94 (953)
T ss_pred             CccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc----ccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCC
Confidence            358999999999999999999999999999999876532    224566788888876 69999999999864     46


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|||||||.||+.-++++.-.+..+.|..+..|++.++.|+.|||...++|||+|=.|||++.+|.|||+|||.|..+.
T Consensus        95 qLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQld  174 (953)
T KOG0587|consen   95 QLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  174 (953)
T ss_pred             eEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeeeeee
Confidence            89999999999999999998767779999999999999999999999999999999999999999999999999985322


Q ss_pred             ---------C-----------------CCceeecccccchHHHHHHHHhCCccc
Q 042772          460 ---------C-----------------KPQVFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       460 ---------~-----------------~~~~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                               .                 .+.+-..+|+|++|.++-|+.-|..|+
T Consensus       175 sT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl  228 (953)
T KOG0587|consen  175 STVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPL  228 (953)
T ss_pred             cccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCc
Confidence                     1                 122234558888888888888888775

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.88  E-value=2.7e-22  Score=189.79  Aligned_cols=143  Identities=20%  Similarity=0.177  Sum_probs=111.4

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHH-----------------------HHHHHHHHHHHHhCCCCC
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNK-----------------------VHRACIEREIMSLLDHPF  367 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~-----------------------~~~~~~E~~il~~l~Hpn  367 (489)
                      ...||+|+||.||+|.+. +|+.||+|+++.........                       ......|..++..+.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG   80 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            468999999999999987 89999999997653221110                       122345889999998887


Q ss_pred             cceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCeecCCCCCCEEEecCCc
Q 042772          368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL-HCLGIIYRDLKPENILLQKDGH  446 (489)
Q Consensus       368 Iv~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yL-H~~gIvHrDLKP~NILld~~g~  446 (489)
                      +.........  ..++||||++|+++...+...  ..+++..+..++.|++.+|.|+ |+.||+||||||+|||++ ++.
T Consensus        81 v~~p~~~~~~--~~~iVmE~i~g~~l~~~~~~~--~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~  155 (190)
T cd05147          81 IPCPEPILLK--SHVLVMEFIGDDGWAAPRLKD--APLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGK  155 (190)
T ss_pred             CCCCcEEEec--CCEEEEEEeCCCCCcchhhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCc
Confidence            7554433222  238999999888776553332  3488999999999999999999 799999999999999998 578


Q ss_pred             EEEEecCCccccC
Q 042772          447 VVLTDFDLSFMTS  459 (489)
Q Consensus       447 vKL~DFGlS~~~~  459 (489)
                      ++|+|||+|....
T Consensus       156 v~LiDFG~a~~~~  168 (190)
T cd05147         156 LYIIDVSQSVEHD  168 (190)
T ss_pred             EEEEEccccccCC
Confidence            9999999997543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.88  E-value=4.4e-23  Score=198.66  Aligned_cols=176  Identities=26%  Similarity=0.363  Sum_probs=144.7

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeE-EEEeCCeEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYA-SFQTSTHICL  383 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~-~~~~~~~~~l  383 (489)
                      +.|.+.+.||+|.||.+.+|+++.+...+++|.+.+...    ....|.+|..---.| .|.||+.-|+ .|++.+.+++
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t----t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF   99 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT----TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVF   99 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh----hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEE
Confidence            569999999999999999999999999999999976533    345566665543333 5899997766 5788889999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe--cCCcEEEEecCCccccC--
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ--KDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld--~~g~vKL~DFGlS~~~~--  459 (489)
                      +|||+|.|+|.+-+...   .+-|.....++.|++.|+.|||++++||||||.+||||-  +...|||||||+++...  
T Consensus       100 ~qE~aP~gdL~snv~~~---GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~t  176 (378)
T KOG1345|consen  100 VQEFAPRGDLRSNVEAA---GIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTT  176 (378)
T ss_pred             eeccCccchhhhhcCcc---cccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccccCce
Confidence            99999999999887653   267889999999999999999999999999999999994  34589999999997433  


Q ss_pred             ----------CCC-----------ceeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------CKP-----------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------~~~-----------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +.|           ......|+|.+|.+.+..++|++||-
T Consensus       177 V~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQ  226 (378)
T KOG1345|consen  177 VKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQ  226 (378)
T ss_pred             ehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcch
Confidence                      111           11234589999999999999999984

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3.9e-24  Score=204.01  Aligned_cols=180  Identities=26%  Similarity=0.358  Sum_probs=139.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--------  377 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--------  377 (489)
                      +.|.-+..||+|.||.||+|+.+.+|+.||+|.+--... ....-....+|+.+|..+.|+|++.+++.|..        
T Consensus        17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmene-KeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~   95 (376)
T KOG0669|consen   17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRD   95 (376)
T ss_pred             hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhcc-ccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccc
Confidence            458888999999999999999999999999886532110 11122345679999999999999999887743        


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      ...+|+||.+|+. +|.-+|.... ..++..++..++.++..||.|+|+..|+|||+||+|+||+.+|.+||+|||+++.
T Consensus        96 r~t~ylVf~~ceh-DLaGlLsn~~-vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~  173 (376)
T KOG0669|consen   96 RATFYLVFDFCEH-DLAGLLSNRK-VRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARA  173 (376)
T ss_pred             cceeeeeHHHhhh-hHHHHhcCcc-ccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccc
Confidence            2359999999965 9999887643 4489999999999999999999999999999999999999999999999999975


Q ss_pred             cCCCCce---eecccccchHHHHHHHHhCCcccC
Q 042772          458 TSCKPQV---FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~~~~~---~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .+-....   .+...|.++.|..||+++|.--|+
T Consensus       174 fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg  207 (376)
T KOG0669|consen  174 FSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYG  207 (376)
T ss_pred             eecccccCCCCcccceeeeecCCHHHhhcccccC
Confidence            5421111   123344555555555555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=1.5e-21  Score=225.97  Aligned_cols=169  Identities=20%  Similarity=0.291  Sum_probs=140.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|...+.||+|+||.||+|.+..++..||+|.+......       ...|++++++++||||+++++++.+....|+|||
T Consensus       691 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-------~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~E  763 (968)
T PLN00113        691 SLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI-------PSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHE  763 (968)
T ss_pred             hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc-------cHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEe
Confidence            466677899999999999999989999999988643211       1235788999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCCCCEEEecCCcEEEEecCCcccc-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH---CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT-----  458 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH---~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~-----  458 (489)
                      |+++|+|.++++.     +++..+..++.|++.||+|||   +.+|+||||||+||+++.++..++. ||.+...     
T Consensus       764 y~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~  837 (968)
T PLN00113        764 YIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTK  837 (968)
T ss_pred             CCCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCCC
Confidence            9999999999963     688999999999999999999   6799999999999999988887765 5544211     


Q ss_pred             ------CCCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          459 ------SCKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ------~~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            ..+|+.      ...+|+|++|++++|+++|..||.
T Consensus       838 ~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~  879 (968)
T PLN00113        838 CFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPAD  879 (968)
T ss_pred             ccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCC
Confidence                  112322      234699999999999999999974

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.87  E-value=2.4e-21  Score=182.91  Aligned_cols=143  Identities=20%  Similarity=0.161  Sum_probs=113.2

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchH-----------------------HHHHHHHHHHHHHhCCCCC
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-----------------------KVHRACIEREIMSLLDHPF  367 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~-----------------------~~~~~~~E~~il~~l~Hpn  367 (489)
                      .+.||+|+||+||+|.+. +|+.||+|++++.......                       ....+..|...+.++.|++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            568999999999999987 8999999999865321100                       0123457889999999998


Q ss_pred             cceeeEEEEeCCeEEEEEecCCCCCHHHH-HhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCC
Q 042772          368 LPTLYASFQTSTHICLITDFCPGGELFAL-LDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       368 Iv~l~~~~~~~~~~~lVmEy~~ggsL~~~-L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g  445 (489)
                      +.....+....  .++||||++|+++... +..   ..+++..+..++.|++.++.++|+ +||+||||||+||+++ ++
T Consensus        81 i~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~~---~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~  154 (190)
T cd05145          81 VPVPEPILLKK--NVLVMEFIGDDGSPAPRLKD---VPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DG  154 (190)
T ss_pred             CCCceEEEecC--CEEEEEEecCCCchhhhhhh---ccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CC
Confidence            86554443332  4899999988765443 332   336788999999999999999999 9999999999999999 88


Q ss_pred             cEEEEecCCccccCC
Q 042772          446 HVVLTDFDLSFMTSC  460 (489)
Q Consensus       446 ~vKL~DFGlS~~~~~  460 (489)
                      .++|+|||+|.....
T Consensus       155 ~~~liDFG~a~~~~~  169 (190)
T cd05145         155 KPYIIDVSQAVELDH  169 (190)
T ss_pred             CEEEEEcccceecCC
Confidence            999999999987653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=5.2e-22  Score=202.07  Aligned_cols=143  Identities=27%  Similarity=0.374  Sum_probs=123.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHH--hCCCCCcceeeEEEEeC----C
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS--LLDHPFLPTLYASFQTS----T  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~--~l~HpnIv~l~~~~~~~----~  379 (489)
                      .+.++.+.||+|.||.||+|.++  |+.||+|++...      +...+.+|.+|.+  .|+|+||+.++++=..+    .
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wr--Ge~VAVKiF~sr------dE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~T  282 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWR--GEDVAVKIFSSR------DERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWT  282 (513)
T ss_pred             heeEEEEEecCccccceeecccc--CCceEEEEeccc------chhhhhhHHHHHHHHHhccchhhhhhhccccCCCceE
Confidence            46888999999999999999999  789999999543      2345667888876  46999999999875433    3


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-----C---CCeecCCCCCCEEEecCCcEEEEe
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-----L---GIIYRDLKPENILLQKDGHVVLTD  451 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-----~---gIvHrDLKP~NILld~~g~vKL~D  451 (489)
                      ++|||++|.+.|||++||.+   .+++.+....++..++.||+|||.     +   .|.|||||..|||+.++|.+.|+|
T Consensus       283 QLwLvTdYHe~GSL~DyL~r---~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IAD  359 (513)
T KOG2052|consen  283 QLWLVTDYHEHGSLYDYLNR---NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD  359 (513)
T ss_pred             EEEEeeecccCCcHHHHHhh---ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEee
Confidence            79999999999999999988   448899999999999999999994     2   499999999999999999999999


Q ss_pred             cCCccccC
Q 042772          452 FDLSFMTS  459 (489)
Q Consensus       452 FGlS~~~~  459 (489)
                      +|+|....
T Consensus       360 LGLAv~h~  367 (513)
T KOG2052|consen  360 LGLAVRHD  367 (513)
T ss_pred             ceeeEEec
Confidence            99997554

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.87  E-value=1.2e-21  Score=214.00  Aligned_cols=178  Identities=17%  Similarity=0.173  Sum_probs=126.6

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCC----CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEE----
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGA----GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYAS----  374 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~t----g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~----  374 (489)
                      ...++|.+.+.||+|+||.||+|.+..+    +..||+|.+.....     ......+  .+....+.++..+...    
T Consensus       129 ~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~-----~e~~~~e--~l~~~~~~~~~~~~~~~~~~  201 (566)
T PLN03225        129 FKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA-----VEIWMNE--RVRRACPNSCADFVYGFLEP  201 (566)
T ss_pred             CccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch-----hHHHHHH--HHHhhchhhHHHHHHhhhcc
Confidence            3457899999999999999999999988    89999998754211     1111111  1112222222222211    


Q ss_pred             --EEeCCeEEEEEecCCCCCHHHHHhhCCCC------------------CCCHHHHHHHHHHHHHHHHHHHHCCCeecCC
Q 042772          375 --FQTSTHICLITDFCPGGELFALLDKQPMK------------------IFREDSARFYAAEVVIGLEYLHCLGIIYRDL  434 (489)
Q Consensus       375 --~~~~~~~~lVmEy~~ggsL~~~L~~~~~~------------------~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDL  434 (489)
                        .......++||||+++++|.+++......                  ...+..+..++.||+.||.|||+++|+||||
T Consensus       202 ~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDL  281 (566)
T PLN03225        202 VSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDV  281 (566)
T ss_pred             cccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcC
Confidence              23456799999999999999998754210                  1123456679999999999999999999999


Q ss_pred             CCCCEEEec-CCcEEEEecCCccccCC----------------CCcee----------------------------eccc
Q 042772          435 KPENILLQK-DGHVVLTDFDLSFMTSC----------------KPQVF----------------------------YHAH  469 (489)
Q Consensus       435 KP~NILld~-~g~vKL~DFGlS~~~~~----------------~~~~~----------------------------~~~~  469 (489)
                      ||+|||++. ++.+||+|||+|+....                +|+.+                            ...|
T Consensus       282 KP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~D  361 (566)
T PLN03225        282 KPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFD  361 (566)
T ss_pred             CHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcc
Confidence            999999985 68999999999964211                11111                            1129


Q ss_pred             ccchHHHHHHHHhCCccc
Q 042772          470 VNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       470 v~s~g~~a~e~~~G~lpY  487 (489)
                      +|++|++++|+++|.+++
T Consensus       362 VwSlGviL~el~~~~~~~  379 (566)
T PLN03225        362 IYSAGLIFLQMAFPNLRS  379 (566)
T ss_pred             cHHHHHHHHHHHhCcCCC
Confidence            999999999999887664

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.86  E-value=3.9e-21  Score=206.39  Aligned_cols=156  Identities=21%  Similarity=0.252  Sum_probs=118.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEc----------------CCCcEEEEEEeecccccchH-----------HHHHHH
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQ----------------GAGELYAMKAMEKSVMLNRN-----------KVHRAC  354 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~----------------~tg~~vAiK~i~~~~~~~~~-----------~~~~~~  354 (489)
                      .+..++|.+.+.||+|+||.||+|.+.                ..++.||+|.+.........           ..+...
T Consensus       141 r~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~  220 (507)
T PLN03224        141 RWSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGM  220 (507)
T ss_pred             CccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhH
Confidence            456789999999999999999999752                23567999998643211100           112233


Q ss_pred             HHHHHHHhCCCCCc-----ceeeEEEEe--------CCeEEEEEecCCCCCHHHHHhhCC--------------------
Q 042772          355 IEREIMSLLDHPFL-----PTLYASFQT--------STHICLITDFCPGGELFALLDKQP--------------------  401 (489)
Q Consensus       355 ~E~~il~~l~HpnI-----v~l~~~~~~--------~~~~~lVmEy~~ggsL~~~L~~~~--------------------  401 (489)
                      .|+.++.++.|.++     +.++++|..        ....++||||+++++|.++++...                    
T Consensus       221 vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~  300 (507)
T PLN03224        221 VEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDN  300 (507)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhh
Confidence            46667777766544     566666643        346899999999999999987421                    


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          402 --MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       402 --~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                        ...+++..+..++.|++.+|.|||+++|+||||||+|||++.++.+||+|||++..
T Consensus       301 ~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~  358 (507)
T PLN03224        301 MPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVD  358 (507)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccc
Confidence              11245677888999999999999999999999999999999999999999999853

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.86  E-value=6.2e-21  Score=181.69  Aligned_cols=167  Identities=40%  Similarity=0.631  Sum_probs=145.0

Q ss_pred             CceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCHHHHH
Q 042772          318 DTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL  397 (489)
Q Consensus       318 ~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL~~~L  397 (489)
                      +||.||+|....+++.+|+|.+........  .+.+..|++.++.++|+||+++++++......+++|||+++++|.+++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~   78 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK--RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLL   78 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH--HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHH
Confidence            589999999999999999999976533221  578888999999999999999999999989999999999999999999


Q ss_pred             hhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC--------------Cc
Q 042772          398 DKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK--------------PQ  463 (489)
Q Consensus       398 ~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~--------------~~  463 (489)
                      .....  ++...+..++.+++.++.|||+.+++|+||+|.||+++.++.++|+|||.+......              |+
T Consensus        79 ~~~~~--~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE  156 (244)
T smart00220       79 KKRGR--LSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPE  156 (244)
T ss_pred             HhccC--CCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHH
Confidence            87543  789999999999999999999999999999999999999999999999998754321              11


Q ss_pred             ------eeecccccchHHHHHHHHhCCcccC
Q 042772          464 ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       464 ------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            .....|+|++|.+++++++|..||.
T Consensus       157 ~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~  187 (244)
T smart00220      157 VLLGKGYGKAVDVWSLGVILYELLTGKPPFP  187 (244)
T ss_pred             HHccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                  1234688999999999999999984

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.86  E-value=4.7e-22  Score=187.61  Aligned_cols=144  Identities=21%  Similarity=0.339  Sum_probs=126.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeC--CeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTS--THI  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~--~~~  381 (489)
                      .++|++++.+|+|-|+.|+.|....+.+.++||++++.      ..+.+.+|+.||..|. ||||+++++...++  ...
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV------kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sktp  110 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV------KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTP  110 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH------HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCc
Confidence            46799999999999999999999888999999999654      3467889999999997 99999999988765  457


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-CCcEEEEecCCccccC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLSFMTS  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-~g~vKL~DFGlS~~~~  459 (489)
                      .||+||+.+.+...+...     ++.-.++.++.|++.||.|+|++||+|||+||.|++||. .-.++|+|+|+|.+..
T Consensus       111 aLiFE~v~n~Dfk~ly~t-----l~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYH  184 (338)
T KOG0668|consen  111 SLIFEYVNNTDFKQLYPT-----LTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYH  184 (338)
T ss_pred             hhHhhhhccccHHHHhhh-----hchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcC
Confidence            899999998888776533     788889999999999999999999999999999999984 4579999999997654

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.86  E-value=4.4e-21  Score=211.43  Aligned_cols=186  Identities=22%  Similarity=0.312  Sum_probs=155.6

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcC-------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceee
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQG-------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLY  372 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  372 (489)
                      .++...+..+.+.||+|.||+|++|....       ....||+|.++...  .....+.+..|+.+|+.+ .||||+.++
T Consensus       291 ~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~--~~~~~~~~~~El~~m~~~g~H~niv~ll  368 (609)
T KOG0200|consen  291 WEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENA--SSSEKKDLMSELNVLKELGKHPNIVNLL  368 (609)
T ss_pred             eeechhhccccceeecccccceEeEEEeecccccccceEEEEEEeccccc--CcHHHHHHHHHHHHHHHhcCCcchhhhe
Confidence            34455566777799999999999998652       14589999986553  236678899999999988 599999999


Q ss_pred             EEEEeCCeEEEEEecCCCCCHHHHHhhCC------------C--CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCC
Q 042772          373 ASFQTSTHICLITDFCPGGELFALLDKQP------------M--KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPEN  438 (489)
Q Consensus       373 ~~~~~~~~~~lVmEy~~ggsL~~~L~~~~------------~--~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~N  438 (489)
                      +++...+.+++|+||+..|+|..+|....            .  ..++......++.||+.|++||+++.+|||||..+|
T Consensus       369 G~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRN  448 (609)
T KOG0200|consen  369 GACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARN  448 (609)
T ss_pred             eeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhh
Confidence            99999999999999999999999998764            0  137888999999999999999999999999999999


Q ss_pred             EEEecCCcEEEEecCCccccCC---------C---C------------ceeecccccchHHHHHHH-HhCCcccC
Q 042772          439 ILLQKDGHVVLTDFDLSFMTSC---------K---P------------QVFYHAHVNGFYFIMYKW-LTGYFTYV  488 (489)
Q Consensus       439 ILld~~g~vKL~DFGlS~~~~~---------~---~------------~~~~~~~v~s~g~~a~e~-~~G~lpY~  488 (489)
                      ||+.++..+||+|||+|+....         .   |            .....+|||+||..++|+ .+|..||.
T Consensus       449 VLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp  523 (609)
T KOG0200|consen  449 VLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYP  523 (609)
T ss_pred             EEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCC
Confidence            9999999999999999973221         1   1            122345999999999998 59999996

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.84  E-value=8.1e-20  Score=169.02  Aligned_cols=143  Identities=38%  Similarity=0.603  Sum_probs=127.7

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCH
Q 042772          314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL  393 (489)
Q Consensus       314 LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL  393 (489)
                      ||+|.+|.||++....+++.+++|.+.......  ....+.+|+.+++.+.|++|+++++++......+++|||+++++|
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~--~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l   78 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS--LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSL   78 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh--HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcH
Confidence            689999999999999889999999987553211  356788899999999999999999999998999999999998999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-CCcEEEEecCCccccC
Q 042772          394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLSFMTS  459 (489)
Q Consensus       394 ~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-~g~vKL~DFGlS~~~~  459 (489)
                      .+++.... ..++...+..++.+++.++.+||++|++|+||+|.||+++. ++.++|+|||.+....
T Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~  144 (215)
T cd00180          79 KDLLKENE-GKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLT  144 (215)
T ss_pred             HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEcc
Confidence            99998752 24789999999999999999999999999999999999998 8999999999987543

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.83  E-value=4e-21  Score=188.92  Aligned_cols=177  Identities=23%  Similarity=0.368  Sum_probs=149.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------  378 (489)
                      ..+|.-+.++|.|.- .|..|.+.-+++.||+|.+.... .+....++..+|..++..+.|+||++++.+|...      
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf-~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~   93 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPF-QNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEF   93 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchhhccCceehhhhcCcc-ccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHH
Confidence            457899999999998 88889999999999999887653 3455567888999999999999999999999754      


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+|+|||++ ..+|.+.+...    ++-.++..++.|+++|+.|||+.||+||||||+||++..++.+||.|||+|+.-
T Consensus        94 ~e~y~v~e~m-~~nl~~vi~~e----lDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e  168 (369)
T KOG0665|consen   94 QEVYLVMELM-DANLCQVILME----LDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTE  168 (369)
T ss_pred             HhHHHHHHhh-hhHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhccc
Confidence            3589999999 66999988743    678899999999999999999999999999999999999999999999999632


Q ss_pred             CC--------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC--------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~--------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..              .|      ..-...++|+.|+++-|+++|.+.|.
T Consensus       169 ~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~  218 (369)
T KOG0665|consen  169 DTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFP  218 (369)
T ss_pred             CcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEec
Confidence            20              11      12234488999999999999988774

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.83  E-value=1e-19  Score=185.73  Aligned_cols=178  Identities=24%  Similarity=0.340  Sum_probs=145.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCC-cEEEEEEeecccccchHHHHHHHHHHHHHHhCCC----CCcceeeEEE-EeCCe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAG-ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH----PFLPTLYASF-QTSTH  380 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg-~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H----pnIv~l~~~~-~~~~~  380 (489)
                      +|.+.+.||+|+||.||+|.+..++ ..+|+|+.........   ..+..|..++..+..    +++..+++.. .....
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~---~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~   95 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKP---SVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDF   95 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCC---ccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCce
Confidence            7999999999999999999988764 6889998765422211   156678888888762    6899999998 47788


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-----CcEEEEecCCc
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-----GHVVLTDFDLS  455 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-----g~vKL~DFGlS  455 (489)
                      .|+||+.+ |.+|.++....+.+.++..++..++.|++.+|++||+.|++||||||.|+++...     -.+.|.|||+|
T Consensus        96 ~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGla  174 (322)
T KOG1164|consen   96 NFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLA  174 (322)
T ss_pred             eEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCC
Confidence            99999988 8899999877776779999999999999999999999999999999999999765     36999999999


Q ss_pred             c--ccC-CC--------C--------------------ceeecccccchHHHHHHHHhCCcccC
Q 042772          456 F--MTS-CK--------P--------------------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~--~~~-~~--------~--------------------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +  ... ..        +                    +.-...|.++++|++.+|..|.+||.
T Consensus       175 r~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~  238 (322)
T KOG1164|consen  175 RRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWE  238 (322)
T ss_pred             ccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCc
Confidence            8  311 00        0                    00122377889999999999999994

>PRK10345 hypothetical protein; Provisional

Probab=99.82  E-value=1.4e-19  Score=173.79  Aligned_cols=139  Identities=23%  Similarity=0.266  Sum_probs=108.2

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-----CCCCcceeeEEEEeCC---
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-----DHPFLPTLYASFQTST---  379 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-----~HpnIv~l~~~~~~~~---  379 (489)
                      +.-.+.||+|+||.||.  ++.++.. +||++....   ....+.+.+|+.+++.+     +||||+++++++.++.   
T Consensus         4 L~~~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~---~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g   77 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRG---DGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTG   77 (210)
T ss_pred             cCCcceecCCCceEEEE--CCCCcCe-EEEEEeccc---cchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCe
Confidence            34457899999999995  6666555 688886532   22346788999999999     6799999999998873   


Q ss_pred             eEE-EEEec--CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHH-HHHHHCCCeecCCCCCCEEEecC----CcEEEEe
Q 042772          380 HIC-LITDF--CPGGELFALLDKQPMKIFREDSARFYAAEVVIGL-EYLHCLGIIYRDLKPENILLQKD----GHVVLTD  451 (489)
Q Consensus       380 ~~~-lVmEy--~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL-~yLH~~gIvHrDLKP~NILld~~----g~vKL~D  451 (489)
                      .++ +||||  +++|+|.+++.+.   .+++.  ..++.|++.++ +|||+++|+||||||+|||++..    +.++|+|
T Consensus        78 ~v~~~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiD  152 (210)
T PRK10345         78 YVYDVIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCD  152 (210)
T ss_pred             EEEEEEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEE
Confidence            444 78999  5579999999763   25555  35577888777 99999999999999999999743    3799999


Q ss_pred             -cCCccc
Q 042772          452 -FDLSFM  457 (489)
Q Consensus       452 -FGlS~~  457 (489)
                       ||.+..
T Consensus       153 g~G~~~~  159 (210)
T PRK10345        153 NIGESTF  159 (210)
T ss_pred             CCCCcce
Confidence             554433

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.82  E-value=1.1e-20  Score=195.01  Aligned_cols=180  Identities=22%  Similarity=0.306  Sum_probs=149.4

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC------CCcceeeEEEEe
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH------PFLPTLYASFQT  377 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H------pnIv~l~~~~~~  377 (489)
                      .-.+|.+....|+|-|+.|..|.+...|+.||||+|.....    ..+.-..|++||++|+.      -++++++..|..
T Consensus       430 LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~----M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~h  505 (752)
T KOG0670|consen  430 LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV----MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKH  505 (752)
T ss_pred             hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH----HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhh
Confidence            34678888899999999999999999999999999976533    23344569999999852      378999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-CcEEEEecCCc
Q 042772          378 STHICLITDFCPGGELFALLDKQPM-KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-GHVVLTDFDLS  455 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~-~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-g~vKL~DFGlS  455 (489)
                      .+++|||+|.+ ..+|.+.|+.-+. -.|....++.++.|+..||.+|-..||+|.||||.|||+++. ..+||||||.|
T Consensus       506 knHLClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA  584 (752)
T KOG0670|consen  506 KNHLCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSA  584 (752)
T ss_pred             cceeEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccc
Confidence            99999999998 5699999987532 237889999999999999999999999999999999999865 56899999998


Q ss_pred             cccCC-------------CCcee------ecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSC-------------KPQVF------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~-------------~~~~~------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...+.             +|+++      .+-+.|+.|+++||+.+|.++|.
T Consensus       585 ~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFp  636 (752)
T KOG0670|consen  585 SFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFP  636 (752)
T ss_pred             cccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecC
Confidence            64431             23222      34488999999999999998885

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.82  E-value=5.4e-20  Score=178.26  Aligned_cols=143  Identities=19%  Similarity=0.195  Sum_probs=117.6

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHH------HHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR------ACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~------~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      ..++|+.++.||.|+||.||++..  ++..+|+|.+.............      +.+|+..+.++.||+|+.+.+++..
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~  106 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLL  106 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeee
Confidence            346899999999999999999765  36689999997665444444444      5688889999999999999988664


Q ss_pred             C--------CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEE
Q 042772          378 S--------THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVL  449 (489)
Q Consensus       378 ~--------~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL  449 (489)
                      .        +..+++|||++|.+|.++..      +++.    ...+++.+|..+|+.|++|||+||+||+++.+| ++|
T Consensus       107 ~~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~~----~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~l  175 (232)
T PRK10359        107 AERKTLRYAHTYIMLIEYIEGVELNDMPE------ISED----VKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRI  175 (232)
T ss_pred             cccccccccCCeEEEEEEECCccHHHhhh------ccHH----HHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEE
Confidence            3        35899999999999988732      3332    355899999999999999999999999999988 999


Q ss_pred             EecCCccccC
Q 042772          450 TDFDLSFMTS  459 (489)
Q Consensus       450 ~DFGlS~~~~  459 (489)
                      +|||.+....
T Consensus       176 iDfg~~~~~~  185 (232)
T PRK10359        176 IDLSGKRCTA  185 (232)
T ss_pred             EECCCccccc
Confidence            9999887554

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.82  E-value=4.4e-20  Score=175.51  Aligned_cols=179  Identities=20%  Similarity=0.264  Sum_probs=146.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC-CCcceeeEEEEeCCeE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH-PFLPTLYASFQTSTHI  381 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l~~~~~~~~~~  381 (489)
                      +-.+.|++++.||+|+||-+|+|....+|..||||+=+... .    -..+..|..+.+.|++ ..|+.+..++....+-
T Consensus        12 iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a-~----hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~yn   86 (341)
T KOG1163|consen   12 IVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA-K----HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYN   86 (341)
T ss_pred             eeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccC-C----CcchhHHHHHHHHhccCCCCchhhhhccccccc
Confidence            34467999999999999999999999999999999764332 1    2346678999999974 7888888888888899


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC---CcEEEEecCCcccc
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD---GHVVLTDFDLSFMT  458 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~---g~vKL~DFGlS~~~  458 (489)
                      .+||+.+ |.+|.+++.-.. ..++..+++-.+-|++.-++|+|.++++||||||+|+|+.-+   ..+.|+|||+|...
T Consensus        87 vlVMdLL-GPsLEdLfnfC~-R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky  164 (341)
T KOG1163|consen   87 VLVMDLL-GPSLEDLFNFCS-RRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKY  164 (341)
T ss_pred             eeeeecc-CccHHHHHHHHh-hhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhh
Confidence            9999999 899999987653 348999999999999999999999999999999999999643   46889999999632


Q ss_pred             CC----------------------------CCceeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC----------------------------KPQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~----------------------------~~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      -.                            ..+.....|..+.||.+-.+..|.+||-
T Consensus       165 ~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQ  222 (341)
T KOG1163|consen  165 RDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQ  222 (341)
T ss_pred             ccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCccc
Confidence            11                            0111233366788999988899999984

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.81  E-value=3.2e-21  Score=203.88  Aligned_cols=175  Identities=25%  Similarity=0.421  Sum_probs=147.7

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|.++..+|+|+||-||+++++.+++..|+|+++...   .....-+..|+-+++-.+||||+.+++.+.....+++.|
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep---~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEP---GDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeeeccC---CccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            57999999999999999999999999999999997543   334555667888999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      |||.||+|.+.-.-  .+++++.++.++..+.+.|++|||++|-+|||||=.|||+++.|.+|++|||.+..+.      
T Consensus        92 EycgggslQdiy~~--TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~Kr  169 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKR  169 (829)
T ss_pred             EecCCCcccceeee--cccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhhhhhhh
Confidence            99999999887654  3669999999999999999999999999999999999999999999999999985332      


Q ss_pred             ---CCCceeecccc------cchHHHHHHHHhCCc
Q 042772          460 ---CKPQVFYHAHV------NGFYFIMYKWLTGYF  485 (489)
Q Consensus       460 ---~~~~~~~~~~v------~s~g~~a~e~~~G~l  485 (489)
                         ....+|+.++|      ++|+-..+.|++|..
T Consensus       170 ksfiGtpywmapEvaaverkggynqlcdiwa~git  204 (829)
T KOG0576|consen  170 KSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGIT  204 (829)
T ss_pred             hcccCCccccchhHHHHHhcccccccccccccccc
Confidence               23445555544      345556666666643

>smart00090 RIO RIO-like kinase

Probab=99.79  E-value=9.8e-19  Score=171.17  Aligned_cols=147  Identities=21%  Similarity=0.146  Sum_probs=114.7

Q ss_pred             CcccccccCCCCceEEEEEE-EcCCCcEEEEEEeecccccch--------------------H-HHHHHHHHHHHHHhCC
Q 042772          307 HFKPIKPLGCGDTGSVHLVE-LQGAGELYAMKAMEKSVMLNR--------------------N-KVHRACIEREIMSLLD  364 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~-~~~tg~~vAiK~i~~~~~~~~--------------------~-~~~~~~~E~~il~~l~  364 (489)
                      .|.+.+.||+|+||.||+|. +..+|+.||+|.+........                    . ....+..|..++.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            48889999999999999998 667899999999975431100                    0 1123567999999987


Q ss_pred             CC--CcceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CeecCCCCCCEEE
Q 042772          365 HP--FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG-IIYRDLKPENILL  441 (489)
Q Consensus       365 Hp--nIv~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g-IvHrDLKP~NILl  441 (489)
                      +.  .++.+++.    ...++||||++|.+|...+...  ..+....+..++.|++.+|.+||++| ++||||||+||++
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli  182 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKD--VEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILV  182 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCccccccccc--CCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEE
Confidence            53  34455542    2358999999988887665333  23566677889999999999999999 9999999999999


Q ss_pred             ecCCcEEEEecCCccccCC
Q 042772          442 QKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       442 d~~g~vKL~DFGlS~~~~~  460 (489)
                      + ++.++|+|||+|.....
T Consensus       183 ~-~~~i~LiDFg~a~~~~~  200 (237)
T smart00090      183 H-DGKVVIIDVSQSVELDH  200 (237)
T ss_pred             E-CCCEEEEEChhhhccCC
Confidence            9 88999999999986554

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.78  E-value=1.1e-18  Score=172.62  Aligned_cols=176  Identities=22%  Similarity=0.306  Sum_probs=145.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lV  384 (489)
                      -+|++.+.||+|+||.+++|...-+++.||||.=...     ....++..|-...+.|. .++|+..|-+.+...+..||
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrk-----S~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLV  102 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRK-----SEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILV  102 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEecccc-----CCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhh
Confidence            4799999999999999999999989999999965432     12345566888888874 79999999877888899999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-----CcEEEEecCCccccC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-----GHVVLTDFDLSFMTS  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-----g~vKL~DFGlS~~~~  459 (489)
                      ||.+ |.+|.++++-.+ ..|+..++..++.|++.-++|+|++.+|+|||||+|+||..-     ..|.|+|||+|...-
T Consensus       103 idLL-GPSLEDLFD~Cg-R~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~Yr  180 (449)
T KOG1165|consen  103 IDLL-GPSLEDLFDLCG-RRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYR  180 (449)
T ss_pred             hhhh-CcCHHHHHHHhc-CcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhc
Confidence            9999 899999998875 459999999999999999999999999999999999999643     368999999996432


Q ss_pred             CC----------------------------CceeecccccchHHHHHHHHhCCcccC
Q 042772          460 CK----------------------------PQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~~----------------------------~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .+                            .+.....|..++|-+.-.++-|.+||-
T Consensus       181 Dp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQ  237 (449)
T KOG1165|consen  181 DPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQ  237 (449)
T ss_pred             CccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccc
Confidence            11                            111223366778888888999999994

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.78  E-value=3.4e-18  Score=162.80  Aligned_cols=140  Identities=21%  Similarity=0.239  Sum_probs=115.5

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch-----HHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR-----NKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~-----~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++.||+|++|.||+|.+  .|..+++|..........     ....++.+|..++..+.|++|+....++......+++|
T Consensus         1 ~~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~   78 (211)
T PRK14879          1 MKLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVM   78 (211)
T ss_pred             CcccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEE
Confidence            36799999999999987  467889997654322111     12345778999999999999988777777777899999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ||++|++|.+++...     .. ....++.+++.+|.+||+.|++|+|++|.|||++ ++.++|+|||++....
T Consensus        79 e~~~G~~L~~~~~~~-----~~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~~  145 (211)
T PRK14879         79 EYIEGEPLKDLINSN-----GM-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFSK  145 (211)
T ss_pred             EEeCCcCHHHHHHhc-----cH-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccCCC
Confidence            999999999998653     12 7788899999999999999999999999999999 7899999999987543

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-18  Score=188.58  Aligned_cols=167  Identities=25%  Similarity=0.322  Sum_probs=130.9

Q ss_pred             CcccccccCCCCce-EEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEE
Q 042772          307 HFKPIKPLGCGDTG-SVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       307 ~y~~~~~LG~G~fG-~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      -|...+.+|.|+.| .||+|...  |+.||+|.+-..      ....+.+|+.+|+.- +|||||++|+.-.++..+||.
T Consensus       510 ~~~~~eilG~Gs~Gt~Vf~G~ye--~R~VAVKrll~e------~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIa  581 (903)
T KOG1027|consen  510 FFSPKEILGYGSNGTVVFRGVYE--GREVAVKRLLEE------FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIA  581 (903)
T ss_pred             eeccHHHcccCCCCcEEEEEeeC--CceehHHHHhhH------hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEE
Confidence            35666788899886 57889887  789999987433      345667899999988 499999999988899999999


Q ss_pred             EecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---C--CcEEEEecCCccc
Q 042772          385 TDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---D--GHVVLTDFDLSFM  457 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~--g~vKL~DFGlS~~  457 (489)
                      .|.| ..+|.++++..  .......-..+..+.|++.||+|||+.+||||||||.||||+.   +  ..++|+|||+|..
T Consensus       582 lELC-~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKk  660 (903)
T KOG1027|consen  582 LELC-ACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKK  660 (903)
T ss_pred             ehHh-hhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccc
Confidence            9999 45999999874  1110111335778899999999999999999999999999976   3  4789999999988


Q ss_pred             cCCCCceeec--ccccchHHHHHHHHh
Q 042772          458 TSCKPQVFYH--AHVNGFYFIMYKWLT  482 (489)
Q Consensus       458 ~~~~~~~~~~--~~v~s~g~~a~e~~~  482 (489)
                      +.........  ...++.|+++||++.
T Consensus       661 l~~~~sS~~r~s~~sGt~GW~APE~L~  687 (903)
T KOG1027|consen  661 LAGGKSSFSRLSGGSGTSGWQAPEQLR  687 (903)
T ss_pred             cCCCcchhhcccCCCCcccccCHHHHh
Confidence            8766555443  345677888877653

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=1.5e-17  Score=158.59  Aligned_cols=137  Identities=23%  Similarity=0.233  Sum_probs=106.9

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch-HHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEEE
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR-NKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~-~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +.+...|++|+||+||++..  .+..++.+.++-.....+ -....+.+|+++|++|. |+++++++++    ...+++|
T Consensus         4 ~~~~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvm   77 (218)
T PRK12274          4 PAVNEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDR   77 (218)
T ss_pred             cccceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEE
Confidence            45678899999999998775  467777776654322111 12235788999999995 5889999885    3479999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCC-CCCCEEEecCCcEEEEecCCccccC
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDL-KPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDL-KP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ||+.|.+|.+.+..        . ...++.|++.+|.++|++||+|||| ||+|||++.+|.++|+|||+|....
T Consensus        78 eyI~G~~L~~~~~~--------~-~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~  143 (218)
T PRK12274         78 SYLAGAAMYQRPPR--------G-DLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGN  143 (218)
T ss_pred             eeecCccHHhhhhh--------h-hHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecC
Confidence            99999998754321        1 1346789999999999999999999 7999999999999999999997544

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.75  E-value=1.3e-17  Score=157.58  Aligned_cols=135  Identities=19%  Similarity=0.211  Sum_probs=108.7

Q ss_pred             ccCCCCceEEEEEEEcCCCcEEEEEEeecccccc-----hHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          313 PLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-----RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       313 ~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~-----~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      .||+|+||.||+|.+  ++..+++|.........     .....++.+|..++..+.|+++.....++......+++|||
T Consensus         1 ~ig~G~~~~vy~~~~--~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF--LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCCceEEEEEeec--CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE
Confidence            389999999999985  46789999865432211     11246677899999999988766655556666778999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ++|++|.+++....     .    .++.|++.+|.+||+.|++|+|++|.||+++ ++.++++|||++....
T Consensus        79 ~~g~~l~~~~~~~~-----~----~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~~  140 (199)
T TIGR03724        79 IEGKPLKDVIEEGN-----D----ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYSD  140 (199)
T ss_pred             ECCccHHHHHhhcH-----H----HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcCCC
Confidence            99999999876531     1    6788999999999999999999999999999 8899999999987643

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=1.3e-17  Score=171.73  Aligned_cols=137  Identities=26%  Similarity=0.417  Sum_probs=119.9

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-----CC---CcceeeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-----HP---FLPTLYAS  374 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-----Hp---nIv~l~~~  374 (489)
                      +..++|.+.+.||-|.|++||+|.+..+.+.||+|+++..    ....+....|+.+|++++     |+   +||+|++.
T Consensus        75 F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA----qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~  150 (590)
T KOG1290|consen   75 FNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA----QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDH  150 (590)
T ss_pred             ccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh----hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeecc
Confidence            3447899999999999999999999999999999998643    445566778999999873     33   69999999


Q ss_pred             EEeC----CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecC
Q 042772          375 FQTS----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKD  444 (489)
Q Consensus       375 ~~~~----~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~  444 (489)
                      |...    .++|+|+|++ |-+|..++.....+.++...+..|+.||+.||.|||. .||||-||||+|||+..+
T Consensus       151 FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  151 FKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             ceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeeecc
Confidence            9754    5899999999 7899999999888889999999999999999999995 599999999999999654

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.74  E-value=1.6e-17  Score=157.55  Aligned_cols=140  Identities=19%  Similarity=0.155  Sum_probs=108.6

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc------hH-------------HHHHHHHHHHHHHhCCCC--
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN------RN-------------KVHRACIEREIMSLLDHP--  366 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~------~~-------------~~~~~~~E~~il~~l~Hp--  366 (489)
                      |.+.+.||+|+||.||++... +|+.||+|++.......      ..             .......|..++..+.|+  
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhcCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            788899999999999999875 79999999876532100      00             112356688888888777  


Q ss_pred             CcceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc
Q 042772          367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH  446 (489)
Q Consensus       367 nIv~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~  446 (489)
                      .++..++    ....+++|||++|++|......        .....++.+++.++.++|+.|++|+||||+||++++++.
T Consensus        96 ~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~  163 (198)
T cd05144          96 PVPKPID----WNRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEK  163 (198)
T ss_pred             CCCceee----cCCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCc
Confidence            4455543    2356899999999998765321        234567889999999999999999999999999999999


Q ss_pred             EEEEecCCccccCC
Q 042772          447 VVLTDFDLSFMTSC  460 (489)
Q Consensus       447 vKL~DFGlS~~~~~  460 (489)
                      ++|+|||++.....
T Consensus       164 ~~liDfg~~~~~~~  177 (198)
T cd05144         164 IYIIDWPQMVSTDH  177 (198)
T ss_pred             EEEEECCccccCCC
Confidence            99999999965543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.73  E-value=1e-16  Score=155.99  Aligned_cols=148  Identities=38%  Similarity=0.586  Sum_probs=129.5

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCC-CcceeeEEEEeCCeEEEEEe
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP-FLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp-nIv~l~~~~~~~~~~~lVmE  386 (489)
                      |.+.+.||.|+||.||++.+.   ..+++|.+.............+.+|..++..+.|+ +++++++.+......+++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEe
Confidence            678889999999999999988   78899999876544434577888999999999988 79999999988778899999


Q ss_pred             cCCCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-cEEEEecCCcccc
Q 042772          387 FCPGGELFALLDKQPM-KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFDLSFMT  458 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~-~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-~vKL~DFGlS~~~  458 (489)
                      ++.++++.+++..... ..+++.....++.|++.++.|+|+.+++|||+||+||+++..+ .++++|||++...
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~  152 (384)
T COG0515          79 YVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLL  152 (384)
T ss_pred             cCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceec
Confidence            9999999977776532 1488999999999999999999999999999999999999988 7999999998633

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.73  E-value=3.5e-17  Score=178.25  Aligned_cols=141  Identities=20%  Similarity=0.234  Sum_probs=112.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-----chHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-----~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..|...+.||+|+||.||++.+....  +++|........     ......++.+|..+++.++|++++....++.....
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~--~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGRD--AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCcc--ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            34567889999999999999876543  344432221111     11234568889999999999999988777777777


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .++||||++|++|.+++.          ....++.|++.+|.|||+.|++||||||+|||+ .++.++|+|||+|+...
T Consensus       411 ~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~~~  478 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYSD  478 (535)
T ss_pred             CEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccccCC
Confidence            899999999999999885          245688899999999999999999999999999 67899999999997643

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.72  E-value=1.6e-17  Score=167.02  Aligned_cols=184  Identities=16%  Similarity=0.151  Sum_probs=148.4

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCC-----CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGA-----GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~t-----g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      +...+++....+-+|.||.||.|.+...     .+.|-+|.++..  .++-.+..+..|.-++..+.|||+..+.+.+..
T Consensus       281 v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~--AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie  358 (563)
T KOG1024|consen  281 VQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQH--ASQIQVNLLLQESMLLYGASHPNLLSVLGVSIE  358 (563)
T ss_pred             hhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhc--ccHHHHHHHHHHHHHHhcCcCCCccceeEEEee
Confidence            3456788889999999999999977643     234455655432  245567788888888888999999999987754


Q ss_pred             C-CeEEEEEecCCCCCHHHHHhh------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEE
Q 042772          378 S-THICLITDFCPGGELFALLDK------QPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLT  450 (489)
Q Consensus       378 ~-~~~~lVmEy~~ggsL~~~L~~------~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~  450 (489)
                      + ...++++.+..-|+|..+|..      ...+.++..+...++.|++.|++|||++|+||.||..+|++||+..++||+
T Consensus       359 ~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVklt  438 (563)
T KOG1024|consen  359 DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKLT  438 (563)
T ss_pred             ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEec
Confidence            4 568889999999999999973      233457788889999999999999999999999999999999999999999


Q ss_pred             ecCCccccCC-----------C------------CceeecccccchHHHHHHH-HhCCcccC
Q 042772          451 DFDLSFMTSC-----------K------------PQVFYHAHVNGFYFIMYKW-LTGYFTYV  488 (489)
Q Consensus       451 DFGlS~~~~~-----------~------------~~~~~~~~v~s~g~~a~e~-~~G~lpY~  488 (489)
                      |=.+|+.+..           .            .++...+|+|++|+.++|+ .+|..||-
T Consensus       439 DsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~Pya  500 (563)
T KOG1024|consen  439 DSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYA  500 (563)
T ss_pred             cchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCcc
Confidence            9999985431           1            2233567999999999998 58999984

>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A

Probab=99.72  E-value=3.7e-17  Score=136.04  Aligned_cols=104  Identities=28%  Similarity=0.461  Sum_probs=95.2

Q ss_pred             cCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccc
Q 042772           77 EKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFT  156 (489)
Q Consensus        77 ~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (489)
                      ++++++.|+   ++.|+++|++|++++||+++|++|+++..+..+.                                  
T Consensus         1 p~~i~i~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~----------------------------------   43 (104)
T PF13426_consen    1 PDGIFILDP---DGRILYVNPAFERLFGYSREELIGKSISDFFPEE----------------------------------   43 (104)
T ss_dssp             -SEEEEEET---TSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTT----------------------------------
T ss_pred             CEEEEEECC---cCcEEehhHHHHHHHCcCHHHHcCCCcccccCcc----------------------------------
Confidence            578999999   9999999999999999999999999998777654                                  


Q ss_pred             cCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCc
Q 042772          157 LGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSD  225 (489)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te  225 (489)
                              ......+.+.+++..++.++.++..++++|+.+|+.++++|++|.+|++.+++++.+||||
T Consensus        44 --------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~i~~~~DiTe  104 (104)
T PF13426_consen   44 --------DRPEFEEQIERALEEGGSWSGEVRLRRKDGETFWVEVSASPIRDEDGEITGIIGIFRDITE  104 (104)
T ss_dssp             --------SCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEEEEEEEEEEEEETTSSEEEEEEEEEEEHH
T ss_pred             --------cchhhHHHHHHHHhcCCceeEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCC
Confidence                    5778889999999999999999999999999999999999999999999999999999986

...

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.71  E-value=1.1e-17  Score=169.86  Aligned_cols=141  Identities=23%  Similarity=0.350  Sum_probs=125.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcC---CCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQG---AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~---tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~  381 (489)
                      ..|..+++||.|+|++||++.+..   .++.||+|.+...     ....++.+|+++|..+ .+.||+++.+++...+++
T Consensus        36 ~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t-----s~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v  110 (418)
T KOG1167|consen   36 NAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT-----SSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQV  110 (418)
T ss_pred             hhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc-----cCchHHHHHHHHHHHhccchhhhcchhhhccCCee
Confidence            469999999999999999999877   7889999998643     2235688899999988 489999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe-cCCcEEEEecCCcc
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-KDGHVVLTDFDLSF  456 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld-~~g~vKL~DFGlS~  456 (489)
                      .+||||+++-+..++...     ++...++.++..++.||.++|.+|||||||||.|+|.+ ..+.-.|+|||+|-
T Consensus       111 ~ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  111 AIVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             EEEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHH
Confidence            999999999998888765     67888999999999999999999999999999999997 45678899999984

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.70  E-value=1.6e-16  Score=148.44  Aligned_cols=140  Identities=21%  Similarity=0.206  Sum_probs=100.6

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHH---------------------HHHHHHHHHhCCCC--C
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR---------------------ACIEREIMSLLDHP--F  367 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~---------------------~~~E~~il~~l~Hp--n  367 (489)
                      .+.||+|+||+||+|.+. +++.||+|++.............                     ...|...+..+.+.  .
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~   80 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVP   80 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCC
Confidence            568999999999999987 78999999987643221111111                     13455566665443  3


Q ss_pred             cceeeEEEEeCCeEEEEEecCCCCCHHH-HHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCC
Q 042772          368 LPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       368 Iv~l~~~~~~~~~~~lVmEy~~ggsL~~-~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g  445 (489)
                      +++++++    ...+++|||++++.+.. .+....   . ...+..++.+++.++.++|. +||+|+||||+||+++ ++
T Consensus        81 ~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~---~-~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~  151 (187)
T cd05119          81 VPKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR---L-LEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DG  151 (187)
T ss_pred             CCceEec----CCCEEEEEEeCCCCccChhhhhhh---h-cccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CC
Confidence            4555543    23699999999854432 122111   1 15678889999999999999 9999999999999999 89


Q ss_pred             cEEEEecCCccccCC
Q 042772          446 HVVLTDFDLSFMTSC  460 (489)
Q Consensus       446 ~vKL~DFGlS~~~~~  460 (489)
                      .++|+|||.+.....
T Consensus       152 ~~~liDfg~a~~~~~  166 (187)
T cd05119         152 KVYIIDVPQAVEIDH  166 (187)
T ss_pred             cEEEEECcccccccC
Confidence            999999999976554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.66  E-value=1.6e-15  Score=148.61  Aligned_cols=139  Identities=22%  Similarity=0.315  Sum_probs=105.9

Q ss_pred             cccC-CCCceEEEEEEEcCCCcEEEEEEeecccc----------cchHHHHHHHHHHHHHHhCCCCCc--ceeeEEEEeC
Q 042772          312 KPLG-CGDTGSVHLVELQGAGELYAMKAMEKSVM----------LNRNKVHRACIEREIMSLLDHPFL--PTLYASFQTS  378 (489)
Q Consensus       312 ~~LG-~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~----------~~~~~~~~~~~E~~il~~l~HpnI--v~l~~~~~~~  378 (489)
                      ..|| .|+.|+||.+...  +..+++|.+.....          .......++.+|..++..+.|++|  +..+++....
T Consensus        37 ~~lg~~~g~gtv~~v~~~--~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP--GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             ceeecCCCCccEEEEEeC--CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            3466 7888888888765  67889998854211          011234567889999999998775  6677654432


Q ss_pred             -C---eEEEEEecCCC-CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecC
Q 042772          379 -T---HICLITDFCPG-GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFD  453 (489)
Q Consensus       379 -~---~~~lVmEy~~g-gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFG  453 (489)
                       .   ..++|||+++| .+|.+++...   .+++..    +.|++.+|.+||++||+||||||.|||++.++.++|+|||
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~~----~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg  187 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEA---PLSEEQ----WQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFD  187 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcC---CCCHHH----HHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECC
Confidence             2   23599999997 6999888653   355543    5689999999999999999999999999999999999999


Q ss_pred             CccccC
Q 042772          454 LSFMTS  459 (489)
Q Consensus       454 lS~~~~  459 (489)
                      .+....
T Consensus       188 ~~~~~~  193 (239)
T PRK01723        188 RGELRT  193 (239)
T ss_pred             CcccCC
Confidence            998755

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.63  E-value=2.5e-15  Score=132.80  Aligned_cols=133  Identities=25%  Similarity=0.242  Sum_probs=110.8

Q ss_pred             cccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC--CCcceeeEEEEeCCeEEEEEec
Q 042772          310 PIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH--PFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       310 ~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H--pnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      +++.||.|.++.||++...+  ..+++|.......     ...+..|..+++.+.|  +++++++.++...+..+++|||
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~--~~~~iK~~~~~~~-----~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~   74 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD--EDYVLKINPSREK-----GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEW   74 (155)
T ss_pred             cceecccccccceEEEEecC--CeEEEEecCCCCc-----hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEe
Confidence            45789999999999999864  6789998865421     3567789999999876  5899999888887889999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL---GIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~---gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ++++++..+         +......++.+++.++.+||..   +++|+|++|+||++++.+.++++|||.+...
T Consensus        75 ~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          75 IEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             cCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            988777543         3455666788999999999984   7999999999999999899999999998643

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=1.2e-15  Score=171.72  Aligned_cols=149  Identities=27%  Similarity=0.410  Sum_probs=118.6

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC---CCCcceeeEEEE
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD---HPFLPTLYASFQ  376 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~---HpnIv~l~~~~~  376 (489)
                      ..+++...|.+.+.||+|+||+||+|.... |+.||+|+-++.....      |..=.+++.+|+   -+.|..+..++.
T Consensus       692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~WE------fYI~~q~~~RLk~~~~~~~~~~~~a~~  764 (974)
T KOG1166|consen  692 EFEVGGEKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKPPNPWE------FYICLQVMERLKPQMLPSIMHISSAHV  764 (974)
T ss_pred             eeeecceeEEEEeeeccccceEEEEeecCC-CcEEEEEeecCCCcee------eeehHHHHHhhchhhhcchHHHHHHHc
Confidence            345667789999999999999999999887 9999999876654322      112223333443   244556666666


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-------CCcEEE
Q 042772          377 TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-------DGHVVL  449 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-------~g~vKL  449 (489)
                      -.+.-++|+||.+.|+|.+++..  .+..++..+.++..|++..|++||..+|||+||||+|+||..       +-.++|
T Consensus       765 ~~~~S~lv~ey~~~Gtlld~~N~--~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~l  842 (974)
T KOG1166|consen  765 FQNASVLVSEYSPYGTLLDLINT--NKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYL  842 (974)
T ss_pred             cCCcceeeeeccccccHHHhhcc--CCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEE
Confidence            66778999999999999999974  456899999999999999999999999999999999999942       236999


Q ss_pred             EecCCccc
Q 042772          450 TDFDLSFM  457 (489)
Q Consensus       450 ~DFGlS~~  457 (489)
                      +|||.|..
T Consensus       843 IDfG~siD  850 (974)
T KOG1166|consen  843 IDFGRSID  850 (974)
T ss_pred             Eeccccee
Confidence            99999953

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.61  E-value=9.7e-17  Score=170.28  Aligned_cols=173  Identities=42%  Similarity=0.655  Sum_probs=146.7

Q ss_pred             ccCCCCceEEEEEEE---cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEEEecC
Q 042772          313 PLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLITDFC  388 (489)
Q Consensus       313 ~LG~G~fG~Vy~a~~---~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lVmEy~  388 (489)
                      .+|+|+||.|+++.-   ...|+.||+|+..+.....+... ....|..++...+ ||++++++.+|+.+..++++++|.
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~-~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~   79 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRT-HTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFL   79 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhccccccccccccc-ccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhc
Confidence            379999999998763   35678999999987655444433 5667889999887 999999999999999999999999


Q ss_pred             CCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----C---
Q 042772          389 PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----C---  460 (489)
Q Consensus       389 ~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----~---  460 (489)
                      .||+|...+.....  +.+.....+.+.++.+++++|+.+|+|||+|++||+++.+|++++.|||+++..-     |   
T Consensus        80 rgg~lft~l~~~~~--f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~cgt~  157 (612)
T KOG0603|consen   80 RGGDLFTRLSKEVM--FDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIACGTY  157 (612)
T ss_pred             ccchhhhccccCCc--hHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhhcccch
Confidence            99999999987644  7889999999999999999999999999999999999999999999999996432     1   


Q ss_pred             ---CCc----eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---KPQ----VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---~~~----~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                         .|+    .....|-|++|..+.++++|..||.
T Consensus       158 eymApEI~~gh~~a~D~ws~gvl~felltg~~pf~  192 (612)
T KOG0603|consen  158 EYRAPEIINGHLSAADWWSFGVLAFELLTGTLPFG  192 (612)
T ss_pred             hhhhhHhhhccCCcccchhhhhhHHHHhhCCCCCc
Confidence               111    2234577999999999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.56  E-value=1.7e-15  Score=172.41  Aligned_cols=123  Identities=13%  Similarity=0.151  Sum_probs=93.5

Q ss_pred             CC-CCcceeeEEE-------EeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCC
Q 042772          364 DH-PFLPTLYASF-------QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLK  435 (489)
Q Consensus       364 ~H-pnIv~l~~~~-------~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLK  435 (489)
                      .| +||..++++|       .....++.+|||+ +++|.++|... ...+++..+..++.||+.||.|||++||+|||||
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlK  107 (793)
T PLN00181         30 SHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVR  107 (793)
T ss_pred             hHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHhCCeeeccCC
Confidence            45 5777777777       2234578888988 67999999754 3458999999999999999999999999999999


Q ss_pred             CCCEEEec-------------------CCcEEEEecCCccccC-------------------------------CCCce-
Q 042772          436 PENILLQK-------------------DGHVVLTDFDLSFMTS-------------------------------CKPQV-  464 (489)
Q Consensus       436 P~NILld~-------------------~g~vKL~DFGlS~~~~-------------------------------~~~~~-  464 (489)
                      |+||||+.                   ++.+|++|||+++...                               .+|+. 
T Consensus       108 P~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~  187 (793)
T PLN00181        108 PSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEED  187 (793)
T ss_pred             chhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhh
Confidence            99999954                   4556777777775311                               11221 


Q ss_pred             -----eecccccchHHHHHHHHhCCcccC
Q 042772          465 -----FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       465 -----~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           ....|+|++|++++|+++|..|+.
T Consensus       188 ~~~~~~~~sDVwSlGviL~ELl~~~~~~~  216 (793)
T PLN00181        188 NGSSSNCASDVYRLGVLLFELFCPVSSRE  216 (793)
T ss_pred             ccCCCCchhhhhhHHHHHHHHhhCCCchh
Confidence                 123488999999999998877753

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.52  E-value=4.8e-14  Score=149.81  Aligned_cols=148  Identities=22%  Similarity=0.240  Sum_probs=100.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch---------------------------HHHH-------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR---------------------------NKVH-------  351 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~---------------------------~~~~-------  351 (489)
                      ..|. .++||+|++|+||+|..+ +|+.||||+..+.....-                           ..++       
T Consensus       118 ~~fd-~~plasaSigQVh~A~l~-~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  195 (437)
T TIGR01982       118 AEFE-EKPLAAASIAQVHRARLV-DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLR  195 (437)
T ss_pred             hhCC-CcceeeeehhheEEEEec-CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHH
Confidence            3444 378999999999999986 589999999876421100                           0000       


Q ss_pred             ---HHHHHHHHHHhC----C-CCCcceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHH-HHH
Q 042772          352 ---RACIEREIMSLL----D-HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI-GLE  422 (489)
Q Consensus       352 ---~~~~E~~il~~l----~-HpnIv~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~-aL~  422 (489)
                         .+.+|...+.++    . +++|.-..-++...+..+|||||++|++|.++....... .+   ...++.+++. .+.
T Consensus       196 ~Eldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~-~~---~~~ia~~~~~~~l~  271 (437)
T TIGR01982       196 RELDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAG-LD---RKALAENLARSFLN  271 (437)
T ss_pred             HHHCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcC-CC---HHHHHHHHHHHHHH
Confidence               133455544444    2 344332222223344579999999999998876542211 22   2334555555 477


Q ss_pred             HHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       423 yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|..|++|+|+||.||+++.+|.++++|||++...+
T Consensus       272 ql~~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       272 QVLRDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             HHHhCCceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            8999999999999999999999999999999997654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK13557 histidine kinase; Provisional

Probab=99.52  E-value=9.3e-14  Score=149.57  Aligned_cols=126  Identities=42%  Similarity=0.777  Sum_probs=113.7

Q ss_pred             hhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHH
Q 042772           66 GIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      ...+..+++.+.++|+++|+..++++|+|+|++|++++||+++|++|+++.++..+.                       
T Consensus        29 ~~~~~~~~~~~~~~i~v~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~-----------------------   85 (540)
T PRK13557         29 SDIFFAAVETTRMPMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPE-----------------------   85 (540)
T ss_pred             hHHHHHHHHhCcCcEEEEcCCCCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCC-----------------------
Confidence            445789999999999999987679999999999999999999999999998887664                       


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCc
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSD  225 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te  225 (489)
                                         .+......++..+..++.+..++.+++|+|+.+|...++.|++|.+|.+++++++.+|+|+
T Consensus        86 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~~~g~~~~~~~~~~dit~  146 (540)
T PRK13557         86 -------------------TDRATVAEVRDAIAERREIATEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSR  146 (540)
T ss_pred             -------------------CCHHHHHHHHHHHHcCCCceEEEEEEeCCCCEEEEEEEEEEeECCCCCEEEEEEEecChHH
Confidence                               5677778889999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc
Q 042772          226 HVEPLRNR  233 (489)
Q Consensus       226 ~ke~e~~~  233 (489)
                      +++.+++.
T Consensus       147 ~~~~e~~l  154 (540)
T PRK13557        147 RRDAEDAL  154 (540)
T ss_pred             HHHHHHHH
Confidence            98776543

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.51  E-value=1.2e-14  Score=156.88  Aligned_cols=148  Identities=17%  Similarity=0.244  Sum_probs=96.9

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc---------------------------h----HHHHH
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN---------------------------R----NKVHR  352 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~---------------------------~----~~~~~  352 (489)
                      -...|.. ++||+|++|+||+|..+.+|+.||+|++.+.....                           .    ...+.
T Consensus       118 ~F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~  196 (537)
T PRK04750        118 WFDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKT  196 (537)
T ss_pred             HHHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHH
Confidence            3456777 89999999999999999889999999997652110                           0    01111


Q ss_pred             ------HHHHHHHHHhC----CCCCcceeeEEE-EeCCeEEEEEecCCCCCHHHH--HhhCCC--CCCCHHHHHHHHHHH
Q 042772          353 ------ACIEREIMSLL----DHPFLPTLYASF-QTSTHICLITDFCPGGELFAL--LDKQPM--KIFREDSARFYAAEV  417 (489)
Q Consensus       353 ------~~~E~~il~~l----~HpnIv~l~~~~-~~~~~~~lVmEy~~ggsL~~~--L~~~~~--~~l~e~~~~~i~~qI  417 (489)
                            +.+|...+.++    .+.+.+.+-..+ ...+..+|||||+.|+++.++  +...+.  ..+.+..+..++.| 
T Consensus       197 l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Q-  275 (537)
T PRK04750        197 LHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQ-  275 (537)
T ss_pred             HHHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHH-
Confidence                  22333333333    233222222222 234567899999999999874  332211  01333333334444 


Q ss_pred             HHHHHHHHHCCCeecCCCCCCEEEecCC----cEEEEecCCccccC
Q 042772          418 VIGLEYLHCLGIIYRDLKPENILLQKDG----HVVLTDFDLSFMTS  459 (489)
Q Consensus       418 ~~aL~yLH~~gIvHrDLKP~NILld~~g----~vKL~DFGlS~~~~  459 (489)
                            ++..|++|+|+||.||+++.+|    .++++|||++...+
T Consensus       276 ------if~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        276 ------VFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             ------HHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence                  4469999999999999999888    99999999986554

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=1e-14  Score=160.00  Aligned_cols=177  Identities=25%  Similarity=0.362  Sum_probs=130.9

Q ss_pred             ccccccCCCCceEEEEEEEcCCCcEEEEEEeec---ccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAMEK---SVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       309 ~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~---~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .....+|.|++|.|+.+........++.|....   ...........+..|.-+-..+.|||++..+..+.+.....-.|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            466789999999888888776666666665431   11122223333555666677889999887776666555455559


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK----  461 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~----  461 (489)
                      |||++ +|+.++...  ..+....+..++.|++.||.|||.+||.||||||+|+++..+|.+||+|||.+.....+    
T Consensus       401 E~~~~-Dlf~~~~~~--~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~  477 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSN--GKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKN  477 (601)
T ss_pred             hcccH-HHHHHHhcc--cccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcchh
Confidence            99999 999999875  23788889999999999999999999999999999999999999999999998532211    


Q ss_pred             ---------------Ccee-------ecccccchHHHHHHHHhCCcccC
Q 042772          462 ---------------PQVF-------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ---------------~~~~-------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     |+..       ...++|+.|.+...|.+|..||-
T Consensus       478 ~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk  526 (601)
T KOG0590|consen  478 IHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWK  526 (601)
T ss_pred             hhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccc
Confidence                           1111       12266777777777777777774

>PRK13559 hypothetical protein; Provisional

Probab=99.48  E-value=4.1e-13  Score=138.27  Aligned_cols=125  Identities=42%  Similarity=0.757  Sum_probs=110.7

Q ss_pred             hhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHH
Q 042772           65 QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLA  144 (489)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (489)
                      .+..+..+++.++++++++|+.-++++|+++|++|++++||+.+|++|+++.++..+.                      
T Consensus        41 ~~~~~~~~~e~~~~~i~i~D~~~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~----------------------   98 (361)
T PRK13559         41 SGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAA----------------------   98 (361)
T ss_pred             hhhHHHHHHHhCCCcEEEecCCCCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCC----------------------
Confidence            3455778899999999999986667889999999999999999999999988776543                      


Q ss_pred             HhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          145 LWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                          ........+++++..+..+..+...+++||+.+|+.+++.|++|.+|.+.+++++.+|||
T Consensus        99 --------------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~~~~~v~~~~DIT  158 (361)
T PRK13559         99 --------------------TDPIAVAKIRAAIAAEREIVVELLNYRKDGEPFWNALHLGPVYGEDGRLLYFFGSQWDVT  158 (361)
T ss_pred             --------------------CCHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEEEEEEEEEcCCCCEEEeeeeeeehh
Confidence                                456667778889999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 042772          225 DHVEPLR  231 (489)
Q Consensus       225 e~ke~e~  231 (489)
                      ++++.++
T Consensus       159 erk~~e~  165 (361)
T PRK13559        159 DIRAVRA  165 (361)
T ss_pred             cchhhHH
Confidence            9987653

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.48  E-value=1.4e-13  Score=137.54  Aligned_cols=181  Identities=19%  Similarity=0.242  Sum_probs=117.3

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC----------CCcceeeEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH----------PFLPTLYASFQ  376 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H----------pnIv~l~~~~~  376 (489)
                      .+...+.||.|+++.||.+++..|++.+|+|+............+.+.+|.-....+.+          -.++..++...
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            35677899999999999999999999999999865543444556677666655444322          12332223221


Q ss_pred             ---------eC---C-----eEEEEEecCCCCCHHHHHhh---CCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCeecCC
Q 042772          377 ---------TS---T-----HICLITDFCPGGELFALLDK---QPMK--IFREDSARFYAAEVVIGLEYLHCLGIIYRDL  434 (489)
Q Consensus       377 ---------~~---~-----~~~lVmEy~~ggsL~~~L~~---~~~~--~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDL  434 (489)
                               ..   +     ..+++|+-+ .++|.+++..   ....  .+.......+..|++..+++||..|++|+||
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi  171 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDI  171 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-
T ss_pred             EcCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEeccc
Confidence                     11   1     247788877 5699888653   1111  1112223445589999999999999999999


Q ss_pred             CCCCEEEecCCcEEEEecCCccccC------------CCCc--------------eeecccccchHHHHHHHHhCCcccC
Q 042772          435 KPENILLQKDGHVVLTDFDLSFMTS------------CKPQ--------------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       435 KP~NILld~~g~vKL~DFGlS~~~~------------~~~~--------------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ||+|+|++.+|.++|+||+......            .+|+              .....|.|.+|.+++.|.||.+||+
T Consensus       172 ~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~  251 (288)
T PF14531_consen  172 KPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFG  251 (288)
T ss_dssp             SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STC
T ss_pred             ceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCC
Confidence            9999999999999999998653211            1111              1122288999999999999999996

>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []

Probab=99.47  E-value=2.6e-13  Score=114.03  Aligned_cols=110  Identities=22%  Similarity=0.332  Sum_probs=95.9

Q ss_pred             HHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccc
Q 042772           73 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGV  152 (489)
Q Consensus        73 ~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (489)
                      ||++++++++.|+   ++.|+++|+++.++.|++.++++|+++.-+..++                              
T Consensus         1 l~~~p~~i~v~D~---~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~------------------------------   47 (110)
T PF08448_consen    1 LDSSPDGIFVIDP---DGRIVYANQAAAELFGVSPEELIGRSLFDLLPPE------------------------------   47 (110)
T ss_dssp             HHHCSSEEEEEET---TSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCG------------------------------
T ss_pred             CCCCCceeEEECC---CCEEEEEHHHHHHHhCCCHHHHhhccchhccccc------------------------------
Confidence            6889999999999   9999999999999999999999999987554442                              


Q ss_pred             cccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcccc
Q 042772          153 YNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVE  228 (489)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke  228 (489)
                                  ..+.....+.+++..+.....+..... +|...|..++++|++|.+|++.+++.+.+|||++++
T Consensus        48 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Pi~~~~g~~~g~~~~~~DiT~~rr  110 (110)
T PF08448_consen   48 ------------DREEFQAALRRALAGGEPVFFEEILLR-DGEERWFEVSISPIFDEDGEVVGVLVIIRDITERRR  110 (110)
T ss_dssp             ------------CHHHHHHHHHHHHHHTSEEEEEEEECT-TSCEEEEEEEEEEEECTTTCEEEEEEEEEEECCHHH
T ss_pred             ------------hhhhhHHHHHHhhccCceEEEEEEEee-cCCcEEEEEEEEEeEcCCCCEEEEEEEEEECchhhC
Confidence                        455667788899998888877766655 999999999999999999999999999999999874

The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.

>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []

Probab=99.46  E-value=4.9e-13  Score=112.96  Aligned_cols=111  Identities=21%  Similarity=0.355  Sum_probs=93.0

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      .+.++++.+++++++.|.   +|.|+|+|++|++++||+++|++|+++..+..+.                         
T Consensus         2 ~~~~i~~~~~~~i~~~d~---~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~-------------------------   53 (113)
T PF00989_consen    2 RYRAILENSPDGIFVIDE---DGRILYVNQAAEELLGYSREELIGKSLFDLIHPE-------------------------   53 (113)
T ss_dssp             HHHHHHHCSSSEEEEEET---TSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGG-------------------------
T ss_pred             HHHHHHhcCCceEEEEeC---cCeEEEECHHHHHHHccCHHHHcCCcHHHhcCch-------------------------
Confidence            367899999999999998   9999999999999999999999999987665443                         


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeee-cCCCeeeEEEeecccccCCCCeeEEeeeeccC
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYT-KSGKKFWNLFHLQPMRDHKGELQYFIGVQLDG  223 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~  223 (489)
                                       ......+.+.+.+..++.....-.... ++|+.+|+.++.+|++|..|++.+++++.+||
T Consensus        54 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~DI  113 (113)
T PF00989_consen   54 -----------------DRRELRERLRQALSQGESGESFEVRFRLRDGRPRWVEVRASPVRDEDGQIIGILVIFRDI  113 (113)
T ss_dssp             -----------------GHHHHHHHHHHHHHHCCHECEEEEEEEETTSCEEEEEEEEEEEEETTEEEEEEEEEEEE-
T ss_pred             -----------------hhHHHHHHHHHHHHcCCCceeEEEEEEecCCcEEEEEEEEEEEEeCCCCEEEEEEEEEeC
Confidence                             233577788888888877655444444 59999999999999999999999999999997

PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.44  E-value=2.8e-13  Score=141.20  Aligned_cols=124  Identities=27%  Similarity=0.615  Sum_probs=109.5

Q ss_pred             HHHHHHhc---cCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHH
Q 042772           69 LATTLERI---EKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        69 ~~~~~~~~---~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      |+.++.+.   ..+|++.++.+-|-||+|+|++|+++.||.|.|++.+.|                   +|.||      
T Consensus        16 LENiiRRsn~~dtsFlL~NAQiVD~PiVY~NdgFcKlsGY~RAevMQKs~-------------------tc~FM------   70 (971)
T KOG0501|consen   16 LENIIRRSNNADTSFLLANAQIVDWPIVYCNDGFCKLSGYHRAEVMQKSC-------------------TCSFM------   70 (971)
T ss_pred             HHHHHhhccCCCcceeeccceeeccceEEecCcchhccCccHHHHhcccc-------------------eeeee------
Confidence            44444444   368999999999999999999999999999999999985                   24444      


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCc
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSD  225 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te  225 (489)
                          |||           -+|..+++++++++.+.+.-++|+..|+|+-+|.|..+.+.|++|++..++-|+..++|||.
T Consensus        71 ----yGE-----------ltdk~ti~k~~~t~eN~~~~qfEillyKKN~TPvW~~vqiAPIrNe~d~VVLfLctFkDIT~  135 (971)
T KOG0501|consen   71 ----YGE-----------LTDKGTIEKVRQTLENYETNQFEILLYKKNRTPVWLLVQIAPIRNEKDKVVLFLCTFKDITA  135 (971)
T ss_pred             ----ecc-----------ccchhhHHHHHHHHHhhhhcceeeEeeecCCCceEEEEEeecccCCCceEEEEEeecccchh
Confidence                444           48999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 042772          226 HVEPLRN  232 (489)
Q Consensus       226 ~ke~e~~  232 (489)
                      .|++...
T Consensus       136 ~KQPidd  142 (971)
T KOG0501|consen  136 LKQPIDD  142 (971)
T ss_pred             hcCCCcc
Confidence            9987743

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=1.9e-13  Score=138.33  Aligned_cols=89  Identities=26%  Similarity=0.383  Sum_probs=75.7

Q ss_pred             CCCCcceeeEEEEe---------------------------CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHH
Q 042772          364 DHPFLPTLYASFQT---------------------------STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE  416 (489)
Q Consensus       364 ~HpnIv~l~~~~~~---------------------------~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~q  416 (489)
                      +|||||.+.++|.+                           ...+|+||.-++ .+|.+++..+.   .+......++.|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~~~~---~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLWTRH---RSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHhcCC---CchHHHHHHHHH
Confidence            69999999998843                           235899999885 49999998753   578888899999


Q ss_pred             HHHHHHHHHHCCCeecCCCCCCEEEe--cCC--cEEEEecCCcc
Q 042772          417 VVIGLEYLHCLGIIYRDLKPENILLQ--KDG--HVVLTDFDLSF  456 (489)
Q Consensus       417 I~~aL~yLH~~gIvHrDLKP~NILld--~~g--~vKL~DFGlS~  456 (489)
                      +++|+.|||++||.|||||.+|||+.  +++  .+.|+|||++-
T Consensus       350 lLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcL  393 (598)
T KOG4158|consen  350 LLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCL  393 (598)
T ss_pred             HHHHHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceee
Confidence            99999999999999999999999993  444  57899999874

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.36  E-value=3.4e-12  Score=116.88  Aligned_cols=128  Identities=29%  Similarity=0.302  Sum_probs=95.1

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCC-cceeeEEEEeCCeEEEEEecCC
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF-LPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      ++.|+.|.++.||++...  +..|++|.......    ....+..|..+++.+.+.+ +++++.+..  ...++||||++
T Consensus         3 ~~~l~~G~~~~vy~~~~~--~~~~~lK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~lv~e~i~   74 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA--NKKYVVRIPGNGTE----LLINRENEAENSKLAAEAGIGPKLYYFDP--ETGVLITEFIE   74 (170)
T ss_pred             eeecCCcccCceEEEEEC--CeEEEEEeCCCCcc----cccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeEEEEecC
Confidence            467899999999999865  77899998754421    1123456888888876544 445555432  33589999999


Q ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-----eecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          390 GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGI-----IYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       390 ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gI-----vHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      |.++.+.  .     .   .....+.+++.+|..||+.++     +|+|++|.||+++ ++.++++|||.+..
T Consensus        75 G~~l~~~--~-----~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          75 GSELLTE--D-----F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             CCccccc--c-----c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            9887543  0     1   112356789999999999885     9999999999999 67899999999864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.28  E-value=5.4e-11  Score=113.02  Aligned_cols=141  Identities=16%  Similarity=0.120  Sum_probs=101.7

Q ss_pred             ccccCCCCceEEEEEEEcC------CCcEEEEEEeecccccc-------------------hHHHHH----HHHHHHHHH
Q 042772          311 IKPLGCGDTGSVHLVELQG------AGELYAMKAMEKSVMLN-------------------RNKVHR----ACIEREIMS  361 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~------tg~~vAiK~i~~~~~~~-------------------~~~~~~----~~~E~~il~  361 (489)
                      ...||.|--+.||.|....      .+..+|+|+...+....                   .+..+.    ...|...|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            3578999999999998553      35789999885432110                   011222    337888888


Q ss_pred             hCC--CCCcceeeEEEEeCCeEEEEEecCCCCCHHH-HHhhCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCeecCCCCC
Q 042772          362 LLD--HPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARFYAAEVVIGLEYL-HCLGIIYRDLKPE  437 (489)
Q Consensus       362 ~l~--HpnIv~l~~~~~~~~~~~lVmEy~~ggsL~~-~L~~~~~~~l~e~~~~~i~~qI~~aL~yL-H~~gIvHrDLKP~  437 (489)
                      ++.  .-+++.++++    ...+|||||+.+..+.. .++.   ..+++.....+..+++.+|..| |+.||+|+||+|.
T Consensus        82 rl~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd---~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~  154 (197)
T cd05146          82 RMQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKD---AKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEY  154 (197)
T ss_pred             HHHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhc---cccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHH
Confidence            885  3567777764    45789999996654432 2322   2255566777788999999998 8999999999999


Q ss_pred             CEEEecCCcEEEEecCCccccC
Q 042772          438 NILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       438 NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ||+++ ++.+.|+|||.|....
T Consensus       155 NIL~~-~~~v~iIDF~qav~~~  175 (197)
T cd05146         155 NMLWH-DGKVWFIDVSQSVEPT  175 (197)
T ss_pred             HEEEE-CCcEEEEECCCceeCC
Confidence            99997 5789999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=99.27  E-value=3.1e-11  Score=137.15  Aligned_cols=122  Identities=13%  Similarity=0.081  Sum_probs=105.5

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHh
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      ..+..+++.+++++++.|+   +|.|+++|++|++++||+++|++|+++..+..++                        
T Consensus       155 ~~l~~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~------------------------  207 (779)
T PRK11091        155 SLLRSFLDASPDLVYYRNE---DGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPE------------------------  207 (779)
T ss_pred             HHHHHHHhcCcceEEEECC---CCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHH------------------------
Confidence            4478899999999999999   9999999999999999999999999976555443                        


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                                        ............+..+..++.+....+++|+.+|..++..|++|.+|...+++++.+|||++
T Consensus       208 ------------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~~~~pi~~~~g~~~g~v~~~~DITe~  269 (779)
T PRK11091        208 ------------------AAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITER  269 (779)
T ss_pred             ------------------HHHHHHHHHHHHHhcCCCeEEEEEEEcCCCCEEEEEEEeeeEEcCCCCEEEEEEEEeehhHH
Confidence                              23334455666777888899999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 042772          227 VEPLRNR  233 (489)
Q Consensus       227 ke~e~~~  233 (489)
                      ++++++.
T Consensus       270 k~~e~~l  276 (779)
T PRK11091        270 KRYQDAL  276 (779)
T ss_pred             HHHHHHH
Confidence            9877553

>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR

Probab=99.26  E-value=3e-11  Score=128.44  Aligned_cols=128  Identities=17%  Similarity=0.077  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHhhh-hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCC-hhhhcCCCccccccccchhhhhhccc
Q 042772           55 DRAERERDIRQGI-DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYT-REEILGRNCSFLELTEYTREEILGRN  132 (489)
Q Consensus        55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~-~~e~~g~~~~~l~~~~~~~~~~~~~~  132 (489)
                      |++++.+.+++.. .+..+++.++++|+++|+   +|.|+++|++|++++||+ .++++|+++..+..+.          
T Consensus       239 dit~~~~~e~~~~~~~~~l~e~~~d~I~v~D~---~G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~~~----------  305 (442)
T TIGR02040       239 PAGATQPVGDELSENLARLYHEAPDAIVFSDA---DGTIRGANEAFLELTDSSSLEAVRGRTLDRWLGRG----------  305 (442)
T ss_pred             ccchhhhhhHHHHHHHHHHHHhCCceEEEEcC---CCcEEehhHHHHHHhCCCChHHHcCCCHHHHhCCC----------
Confidence            3455544443333 588999999999999999   999999999999999997 5789999975332221          


Q ss_pred             cccchhHHHHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCc-EEEEEEeeecCCCeeeEEEeecccccCCC
Q 042772          133 CSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQRE-ITVQLINYTKSGKKFWNLFHLQPMRDHKG  211 (489)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~g~~~~~~~~~~p~~~~~g  211 (489)
                                                     ..+   ...+.+.+...+. ...+....++||+.+|+.++++|+.+..+
T Consensus       306 -------------------------------~~~---~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~ve~s~~~i~~~~~  351 (442)
T TIGR02040       306 -------------------------------GVD---LRVLLSNVRRTGQVRLYATTLTGEFGAQTEVEISAAWVDQGER  351 (442)
T ss_pred             -------------------------------ccc---HHHHHHHHhhcCceEEEEEEEEcCCCCEEEEEEEEEEeccCCc
Confidence                                           011   2223333433333 33444557999999999999999987654


Q ss_pred             CeeEEeeeeccCCccccccc
Q 042772          212 ELQYFIGVQLDGSDHVEPLR  231 (489)
Q Consensus       212 ~~~~~~~~~~d~Te~ke~e~  231 (489)
                        ..++++.+|||++++++.
T Consensus       352 --~~~~~v~rDITeR~~~~~  369 (442)
T TIGR02040       352 --PLIVLVIRDISRRLTMRD  369 (442)
T ss_pred             --eEEEEEEecchhhccCCC
Confidence              568899999999998753

This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).

>PRK13558 bacterio-opsin activator; Provisional

Probab=99.25  E-value=4e-11  Score=133.91  Aligned_cols=125  Identities=33%  Similarity=0.684  Sum_probs=110.6

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      +..+++..+.++++.|...+++.|+|+|++|++++||+++|++|+++.++..+.                          
T Consensus       150 ~~~~~~~~~~gi~~~d~~~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~--------------------------  203 (665)
T PRK13558        150 KERALDEAPVGITIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGED--------------------------  203 (665)
T ss_pred             HHHHHhcCCccEEEEcCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCC--------------------------
Confidence            467889999999999876678999999999999999999999999987776553                          


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcccc
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVE  228 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke  228 (489)
                                      ........++.++..++.+..++..++++|..+|+.++..|++|..|.+.+++++.+|||++|+
T Consensus       204 ----------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~G~~~~~vgi~~DITerk~  267 (665)
T PRK13558        204 ----------------TNEERVAELREAIDEERPTSVELRNYRKDGSTFWNQVDIAPIRDEDGTVTHYVGFQTDVTERKE  267 (665)
T ss_pred             ----------------ccHHHHHHHHHHHhcCCCeEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCcHHHH
Confidence                            4555667788888889999999999999999999999999999999999999999999999998


Q ss_pred             ccccccc
Q 042772          229 PLRNRLS  235 (489)
Q Consensus       229 ~e~~~l~  235 (489)
                      .+++...
T Consensus       268 ~E~~L~~  274 (665)
T PRK13558        268 AELALQR  274 (665)
T ss_pred             HHHHHHH
Confidence            8766543

>PRK13560 hypothetical protein; Provisional

Probab=99.24  E-value=4.1e-11  Score=135.45  Aligned_cols=135  Identities=17%  Similarity=0.106  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHHhh----hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhh
Q 042772           54 WDRAERERDIRQG----IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEIL  129 (489)
Q Consensus        54 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~  129 (489)
                      .|+++|++.+++.    ..+..+++.+++++++.|+   ++.|+++|++|++++||+++|++|++...+..+.       
T Consensus       187 ~DIT~rk~ae~~l~~~~~~l~~l~e~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~-------  256 (807)
T PRK13560        187 EDITERKRAEERIDEALHFLQQLLDNIADPAFWKDE---DAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQ-------  256 (807)
T ss_pred             EccchHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC---CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcc-------
Confidence            4888888766643    4478899999999999999   9999999999999999999999999987665432       


Q ss_pred             ccccccchhHHHHHHHhhhcccccccccCcccccCCCHHHH-HHHHHHHHcCCcEEEEEEeeecCCCeeeEEEee--ccc
Q 042772          130 GRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATV-SKIRDAVREQREITVQLINYTKSGKKFWNLFHL--QPM  206 (489)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~--~p~  206 (489)
                                                          ....+ ...+..+..++....+....++||+.+|+.+.+  .|+
T Consensus       257 ------------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~  300 (807)
T PRK13560        257 ------------------------------------PADDYQEADAAKFDADGSQIIEAEFQNKDGRTRPVDVIFNHAEF  300 (807)
T ss_pred             ------------------------------------hhHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEEEEecceEE
Confidence                                                22222 334455566777788888899999999766554  567


Q ss_pred             ccCCCCeeEEeeeeccCCcccccccccc
Q 042772          207 RDHKGELQYFIGVQLDGSDHVEPLRNRL  234 (489)
Q Consensus       207 ~~~~g~~~~~~~~~~d~Te~ke~e~~~l  234 (489)
                      .|..|.+++++++.+|||++++++++..
T Consensus       301 ~~~~g~~~g~~~~~~DITerk~~e~~L~  328 (807)
T PRK13560        301 DDKENHCAGLVGAITDISGRRAAERELL  328 (807)
T ss_pred             EcCCCCEEEEEEEEEechHHHHHHHHHH
Confidence            8999999999999999999998876653

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.24  E-value=4.6e-12  Score=141.20  Aligned_cols=109  Identities=39%  Similarity=0.667  Sum_probs=83.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .+|..++.|..|+||.||++.++.+.+++|+| +++....-++          ++.....|++|                
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~k-iNkq~lilRn----------ilt~a~npfvv----------------  135 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAMK-INKQNLILRN----------ILTFAGNPFVV----------------  135 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhhc-ccccchhhhc----------cccccCCccee----------------
Confidence            46999999999999999999999999999995 4443221111          33333455554                


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                           |+-..+++.-+  +++-+        ++.+++|+|+.||+|||+||+|.+|..-|++|++|||++.
T Consensus       136 -----gDc~tllk~~g--~lPvd--------mvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk  191 (1205)
T KOG0606|consen  136 -----GDCATLLKNIG--PLPVD--------MVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSK  191 (1205)
T ss_pred             -----chhhhhcccCC--CCcch--------hhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhh
Confidence                 56666665532  23322        3788999999999999999999999999999999999985

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.21  E-value=2.2e-10  Score=106.52  Aligned_cols=136  Identities=19%  Similarity=0.193  Sum_probs=102.6

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchH-----HHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-----KVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~-----~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      ..+++|+-+.+|.+.+.  |..+++|.-.+..+..+.     ...+..+|..++.++.--.|...+-++.+.....|+||
T Consensus         2 ~~i~~GAEa~i~~~~~~--g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me   79 (204)
T COG3642           2 DLIKQGAEAIIYLTDFL--GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVME   79 (204)
T ss_pred             chhhCCcceeEEeeecc--CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEE
Confidence            45789999999999775  444666755443332222     34567789999998876666666556667777899999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      |++|-.|.+.+...     .    ..++..+-.-+.-||..||+|+||.++||++..++ +.++|||++....
T Consensus        80 ~I~G~~lkd~l~~~-----~----~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s~  142 (204)
T COG3642          80 YIEGELLKDALEEA-----R----PDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFSD  142 (204)
T ss_pred             EeCChhHHHHHHhc-----c----hHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCc-EEEEECCcccccc
Confidence            99998888888764     1    33556677778889999999999999999997554 9999999997554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.20  E-value=6.7e-12  Score=121.76  Aligned_cols=183  Identities=17%  Similarity=0.280  Sum_probs=144.8

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ++.....++..|.....|..|+|++.++  .++.|+++...... .....|..|.-.|+.+.||||+.+++.|....++.
T Consensus       187 id~~~lnl~tkl~e~hsgelwrgrwqgn--divakil~vr~~t~-risrdfneefp~lrifshpnilpvlgacnsppnlv  263 (448)
T KOG0195|consen  187 IDVSSLNLITKLAESHSGELWRGRWQGN--DIVAKILNVREVTA-RISRDFNEEFPALRIFSHPNILPVLGACNSPPNLV  263 (448)
T ss_pred             cchhhhhhhhhhccCCCcccccccccCc--chhhhhhhhhhcch-hhcchhhhhCcceeeecCCchhhhhhhccCCCCce
Confidence            4456677888999999999999999854  45667776544332 23355777888899999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEecCCcEEE--EecCCcccc
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQKDGHVVL--TDFDLSFMT  458 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld~~g~vKL--~DFGlS~~~  458 (489)
                      ++..|++.|+|+..|+.+.+-..+..++..++.++++|+.|||+..  |..--|....+++|++.+.+|  +|--+|+..
T Consensus       264 ~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfsfqe  343 (448)
T KOG0195|consen  264 IISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQE  343 (448)
T ss_pred             EeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceeeeec
Confidence            9999999999999999987777889999999999999999999875  445568899999999886654  554444321


Q ss_pred             C-----------------CCCceeecccccchHHHHHHHHhCCcccC
Q 042772          459 S-----------------CKPQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~-----------------~~~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                 .....+..++.|++...++|+.+..+||.
T Consensus       344 ~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfa  390 (448)
T KOG0195|consen  344 VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFA  390 (448)
T ss_pred             cccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccc
Confidence            1                 01112345688999999999999999984

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL

Probab=99.20  E-value=3.5e-11  Score=127.45  Aligned_cols=121  Identities=25%  Similarity=0.389  Sum_probs=106.4

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      .+..+++.++.++++.|.   ++.|+|+|++|++++||+++|++|++...+..+.                         
T Consensus         5 ~~~~i~~~~~~~i~~~d~---~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~-------------------------   56 (494)
T TIGR02938         5 AYRQTVDQAPLAISITDL---KANILYANDAFTRITGYTKEEIIGKNESVLSNHT-------------------------   56 (494)
T ss_pred             HHHHHHHhCCceEEEECC---CCcEEEEchhheeecCCCHHHHhCCCchhhcCCC-------------------------
Confidence            467899999999999999   9999999999999999999999999977665443                         


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccc
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~k  227 (489)
                                       ........+++++..++.+..++...+++|+.+|....+.|++|.+|.+.+++++.+|||+++
T Consensus        57 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt~~k  119 (494)
T TIGR02938        57 -----------------TPPEVYQALWGSLAEQKPWAGKLLNRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDITELH  119 (494)
T ss_pred             -----------------CCHHHHHHHHHHHHhCCcccceeeccCCCccchhhheeeEEEECCCCCEEEEEEehhhhhHHH
Confidence                             445566777888888889989988899999999999999999999999999999999999998


Q ss_pred             cccccc
Q 042772          228 EPLRNR  233 (489)
Q Consensus       228 e~e~~~  233 (489)
                      +++++.
T Consensus       120 ~~e~~l  125 (494)
T TIGR02938       120 RLEQVV  125 (494)
T ss_pred             HHHHHH
Confidence            766543

NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.

>PRK10060 RNase II stability modulator; Provisional

Probab=99.19  E-value=1e-10  Score=130.74  Aligned_cols=131  Identities=15%  Similarity=0.144  Sum_probs=100.9

Q ss_pred             HHHHHHHHHh-hhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCcccc-ccccchhhhhhcccc
Q 042772           56 RAERERDIRQ-GIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFL-ELTEYTREEILGRNC  133 (489)
Q Consensus        56 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l-~~~~~~~~~~~~~~~  133 (489)
                      .++..++..+ ...+..+++.+.++|+++|.   +|.|+++|++|+++|||+.+|++|+++..+ ..+.           
T Consensus        99 ~~~~~~~~~~~~~~~~~v~~~~~~gI~i~D~---~g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~-----------  164 (663)
T PRK10060         99 TPSVARDLSHGLSFAEQVVSEANSVIVILDS---RGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRR-----------  164 (663)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCceEEEEeC---CCCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChh-----------
Confidence            3344444333 34466789999999999999   999999999999999999999999997433 3332           


Q ss_pred             ccchhHHHHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCC-C
Q 042772          134 STYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKG-E  212 (489)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g-~  212 (489)
                                                     ........++..+..+..+.++..+.+|+|+.+|...... +.+..| .
T Consensus       165 -------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~~~~-~~~~~g~~  212 (663)
T PRK10060        165 -------------------------------EAAASRRNIRGFFRSGNAYEVERWIKTRKGQRLFLFRNKF-VHSGSGKN  212 (663)
T ss_pred             -------------------------------hHHHHHHHHHHHHhcCCceEEEEEEEeCCCCEEEEEeeeE-EEcCCCCc
Confidence                                           2334456677888889999999999999999999876544 444445 4


Q ss_pred             eeEEeeeeccCCcccccccc
Q 042772          213 LQYFIGVQLDGSDHVEPLRN  232 (489)
Q Consensus       213 ~~~~~~~~~d~Te~ke~e~~  232 (489)
                      ..+++++.+|||++++.+++
T Consensus       213 ~~~~i~~~~DITe~k~~e~~  232 (663)
T PRK10060        213 EIFLICSGTDITEERRAQER  232 (663)
T ss_pred             eEEEEEEEEechHHHHHHHH
Confidence            56788999999998876654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.19  E-value=7e-12  Score=139.97  Aligned_cols=142  Identities=20%  Similarity=0.257  Sum_probs=116.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccc-cchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM-LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++...+.||++.|=+|.+|++.. |. |++|++-+... .+-....+...|++ ...++|||.+.+.-+..+....|||-
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~e-G~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvR  100 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDRE-GL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVR  100 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCC-ce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHH
Confidence            68888999999999999999875 65 88998865431 11112223333444 66678999999988877888899999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                      +|+. -+|++.|..++.  +..-+...|+.|++.||..+|..||+|+|||.+||||+.=+-+.|+||..
T Consensus       101 qyvk-hnLyDRlSTRPF--L~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAs  166 (1431)
T KOG1240|consen  101 QYVK-HNLYDRLSTRPF--LVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFAS  166 (1431)
T ss_pred             HHHh-hhhhhhhccchH--HHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccc
Confidence            9995 499999988765  77888889999999999999999999999999999999988899999964

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.18  E-value=7e-11  Score=108.75  Aligned_cols=89  Identities=21%  Similarity=0.216  Sum_probs=74.8

Q ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----------
Q 042772          391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----------  460 (489)
Q Consensus       391 gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----------  460 (489)
                      |+|.+++.... ..+++..++.++.|++.||.|||+++      ||+|||++.++.+|+  ||++.....          
T Consensus         1 GsL~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~~~g~~~y~   71 (176)
T smart00750        1 VSLADILEVRG-RPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTPEQSRVDPYFM   71 (176)
T ss_pred             CcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeeccccCCCccccc
Confidence            68999998643 45899999999999999999999999      999999999999999  999864321          


Q ss_pred             CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +|+      ....+|+|++|.+++|+++|..||.
T Consensus        72 aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~  105 (176)
T smart00750       72 APEVIQGQSYTEKADIYSLGITLYEALDYELPYN  105 (176)
T ss_pred             ChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCcc
Confidence            122      1234699999999999999999985

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.16  E-value=4.6e-10  Score=104.17  Aligned_cols=147  Identities=20%  Similarity=0.179  Sum_probs=110.1

Q ss_pred             cccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc-----hHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          310 PIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-----RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       310 ~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~-----~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .+..|-+|+-+.|+.+.+.  |+.+.||.-....+..     +-..++..+|..+|.++.--.|....-+|.+...-+|+
T Consensus        11 ~l~likQGAEArv~~~~~~--Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~   88 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS--GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIY   88 (229)
T ss_pred             cceeeeccceeeEeeeccC--CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEE
Confidence            6778899999999999877  6777777543332222     22356788899999888655665555556677778999


Q ss_pred             EecCCC-CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC---cEEEEecCCcccc
Q 042772          385 TDFCPG-GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---HVVLTDFDLSFMT  458 (489)
Q Consensus       385 mEy~~g-gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g---~vKL~DFGlS~~~  458 (489)
                      |||++| .++.+++...-...........++.++-..+.-||..+|+|+||..+||++..+|   .+.++|||+|...
T Consensus        89 ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen   89 MEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             EEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhcc
Confidence            999966 4788888765333333344467788899999999999999999999999997665   3589999998654

>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional

Probab=99.13  E-value=2.1e-10  Score=130.13  Aligned_cols=133  Identities=17%  Similarity=0.258  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHhhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccc-cccchhhhhhccc
Q 042772           54 WDRAERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLE-LTEYTREEILGRN  132 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~-~~~~~~~~~~~~~  132 (489)
                      .|++++.+.+++...+..+++.++.+++++|+   ++.|+++|++|++++||+.+|++|+++..+. .+.          
T Consensus       123 ~DiT~~~~~~~~~~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~----------  189 (799)
T PRK11359        123 RDASVEMAQKEQTRQLIIAVDHLDRPVIVLDP---ERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPE----------  189 (799)
T ss_pred             eeccchhhhHHHHHHHHHHHhcCCCcEEEEcC---CCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCC----------
Confidence            46666666666666677789999999999999   9999999999999999999999999976443 222          


Q ss_pred             cccchhHHHHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCC
Q 042772          133 CSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGE  212 (489)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~  212 (489)
                                                      ........+...+.....+..+....+++|..+|......|+.|.+|.
T Consensus       190 --------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~v~d~~g~  237 (799)
T PRK11359        190 --------------------------------FPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDVLAH  237 (799)
T ss_pred             --------------------------------CcHHHHHHHHHhhccCCCCcceeEEeCCCCCEEEEEeeeeeeecCCCc
Confidence                                            344455566777777777888888899999999999999999999999


Q ss_pred             eeEEeeeeccCCccccccc
Q 042772          213 LQYFIGVQLDGSDHVEPLR  231 (489)
Q Consensus       213 ~~~~~~~~~d~Te~ke~e~  231 (489)
                      +.+++++.+|||++++.++
T Consensus       238 ~~~~~~~~~DITerk~~e~  256 (799)
T PRK11359        238 LQNLVMTFSDITEERQIRQ  256 (799)
T ss_pred             eeEEEEEeehhhhHHHHHH
Confidence            9999999999999887653

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.10  E-value=5.5e-10  Score=106.26  Aligned_cols=142  Identities=18%  Similarity=0.264  Sum_probs=104.9

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC--CCcceeeEEEEeC---CeEEEEE
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH--PFLPTLYASFQTS---THICLIT  385 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H--pnIv~l~~~~~~~---~~~~lVm  385 (489)
                      .+.|+.|.++.||++.... |..+++|........  .....+..|.++++.+.+  .++++++.+....   +..++||
T Consensus         3 ~~~l~~G~~n~~~~v~~~~-g~~~ilK~~~~~~~~--~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~   79 (223)
T cd05154           3 VRQLSGGQSNLTYLLTAGG-GRRLVLRRPPPGALL--PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVM   79 (223)
T ss_pred             ceecCCCccceEEEEEecC-CcceEEEeCCCcccC--cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEE
Confidence            3678999999999998754 678999987654221  123456789999999865  4567777766543   2578999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC---------------------------------------  426 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~---------------------------------------  426 (489)
                      ||++|.++.+.+..   ..+++.....++.+++.+|..||+                                       
T Consensus        80 e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (223)
T cd05154          80 ERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPA  156 (223)
T ss_pred             EEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHH
Confidence            99999888765532   125666666677777777777773                                       


Q ss_pred             -----------------CCCeecCCCCCCEEEec--CCcEEEEecCCcccc
Q 042772          427 -----------------LGIIYRDLKPENILLQK--DGHVVLTDFDLSFMT  458 (489)
Q Consensus       427 -----------------~gIvHrDLKP~NILld~--~g~vKL~DFGlS~~~  458 (489)
                                       ..++|+|++|.||+++.  ++.+.|+||+.+...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g  207 (223)
T cd05154         157 MERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLG  207 (223)
T ss_pred             HHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccC
Confidence                             23699999999999998  667899999988643

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK09776 putative diguanylate cyclase; Provisional

Probab=99.10  E-value=3.6e-10  Score=132.65  Aligned_cols=138  Identities=19%  Similarity=0.195  Sum_probs=107.9

Q ss_pred             chhHHHHHHHHHhh----hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhh
Q 042772           53 SWDRAERERDIRQG----IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI  128 (489)
Q Consensus        53 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~  128 (489)
                      ..|+++|++.+++.    ..+..+++.++++++++|.   ++.|+++|++|++++||+.+|++|+++..+.....     
T Consensus       518 ~~DITerk~~e~~L~~~~~~l~~~l~~~~~~i~~~D~---~g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~~~-----  589 (1092)
T PRK09776        518 NMDMTEVRQLNEALFQEKERLHITLDSIGEAVVCTDM---AMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITF-----  589 (1092)
T ss_pred             eeehhHHHHHHHHHHHHHHHHHHHHhccccEEEEECC---CCeEEEEcHHHHHHhCCCHHHHcCCCHHHHccccc-----
Confidence            35788887766543    3477889999999999999   99999999999999999999999998754432110     


Q ss_pred             hccccccchhHHHHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCc--EEEEEEeeecCCCeeeEEEeeccc
Q 042772          129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQRE--ITVQLINYTKSGKKFWNLFHLQPM  206 (489)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~g~~~~~~~~~~p~  206 (489)
                                                         ..+......+.......+.  +..+....++||..+|...+++|+
T Consensus       590 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~pi  634 (1092)
T PRK09776        590 -----------------------------------GDNGPLMENIYSCLTSRSAAYLEQDVVLHCRSGGSYDVHYSITPL  634 (1092)
T ss_pred             -----------------------------------CCcchhhHHHHHHHhcCCCccccceEEEEeCCCcEEEEEEEeeee
Confidence                                               0122222335555555544  556667789999999999999999


Q ss_pred             ccCCCCeeEEeeeeccCCccccccccc
Q 042772          207 RDHKGELQYFIGVQLDGSDHVEPLRNR  233 (489)
Q Consensus       207 ~~~~g~~~~~~~~~~d~Te~ke~e~~~  233 (489)
                      +|.+|++.+++++.+|||++++.+++.
T Consensus       635 ~~~~g~~~g~v~~~~DITe~k~~e~~L  661 (1092)
T PRK09776        635 STLDGENIGSVLVIQDVTESRKMLRQL  661 (1092)
T ss_pred             ecCCCCEEEEEEEEEecchHHHHHHHH
Confidence            999999999999999999999877553

>PRK09776 putative diguanylate cyclase; Provisional

Probab=99.06  E-value=5.1e-10  Score=131.36  Aligned_cols=125  Identities=14%  Similarity=0.273  Sum_probs=101.1

Q ss_pred             hhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHH
Q 042772           65 QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLA  144 (489)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (489)
                      ....+..+++.++.+++++|+   +|.|+++|++|++++||+++|++|++...+..++                      
T Consensus       281 ~e~r~~~l~e~~~~~i~~~d~---dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~----------------------  335 (1092)
T PRK09776        281 SETRFRNAMEYSAIGMALVGT---EGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPE----------------------  335 (1092)
T ss_pred             HHHHHHHHHHhCCceEEEEcC---CCcEEehhHHHHHHhCCCHHHHccCCceeccCcc----------------------
Confidence            345578899999999999999   9999999999999999999999999877665543                      


Q ss_pred             HhhhcccccccccCcccccCCCHHHHHHHHHHHHcC-CcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccC
Q 042772          145 LWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQ-REITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDG  223 (489)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~  223 (489)
                                          ........+....... ..+..+....+|||+.+|..++.+|++|.+|.+.+++++.+||
T Consensus       336 --------------------d~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~~g~~~~~i~~~~DI  395 (1092)
T PRK09776        336 --------------------DLNKDLQQVEKLLSGEINSYSMEKRYYRRDGEVVWALLAVSLVRDTDGTPLYFIAQIEDI  395 (1092)
T ss_pred             --------------------hhHhHHHHHHHHHcCCccceeeeeEEEcCCCCEEEEEEEEEEEECCCCCEeeehhhHHhh
Confidence                                1122223333333322 3467888889999999999999999999999999999999999


Q ss_pred             Ccccccccccc
Q 042772          224 SDHVEPLRNRL  234 (489)
Q Consensus       224 Te~ke~e~~~l  234 (489)
                      |++++++++..
T Consensus       396 Terk~~e~~l~  406 (1092)
T PRK09776        396 NELKRTEQVNE  406 (1092)
T ss_pred             HHHHHHHHHHH
Confidence            99998776543

>TIGR00229 sensory_box PAS domain S-box

Probab=99.06  E-value=1.4e-09  Score=87.18  Aligned_cols=117  Identities=19%  Similarity=0.345  Sum_probs=89.5

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      +..+++.++.+++++|+   ++.|+++|++|.+++|++.++++|+++..+..+.                          
T Consensus         5 ~~~~~~~~~~~~~~~d~---~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~--------------------------   55 (124)
T TIGR00229         5 YRAIFESSPDAIIVIDL---EGNILYVNPAFEEIFGYSAEELIGRNVLELIPEE--------------------------   55 (124)
T ss_pred             HHHHHhhCCceEEEEcC---CCcEEEEchHHHHHhCCChHHhcCcchhhhcChh--------------------------
Confidence            56788999999999999   9999999999999999999999998876543332                          


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHcC-CcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccc
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVREQ-REITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~k  227 (489)
                                      ........+..++... .....+.....++|...|......|+. ..|...+++++..|+|+++
T Consensus        56 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dit~~~  118 (124)
T TIGR00229        56 ----------------DREEVRERIERLLEGEREPVSEERRVRRKDGSEIWVEVSVSPIR-TNGGELGVVGIVRDITERK  118 (124)
T ss_pred             ----------------hhHHHHHHHHHHHcCCCCCcceEeeeEcCCCCEEEEEEEEeehh-hCCCeeEEEEEeeehhHHH
Confidence                            1222233344555423 223334444589999999999999998 7889999999999999987


Q ss_pred             cccc
Q 042772          228 EPLR  231 (489)
Q Consensus       228 e~e~  231 (489)
                      +.++
T Consensus       119 ~~~~  122 (124)
T TIGR00229       119 QAEE  122 (124)
T ss_pred             HHHh
Confidence            6543

The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.99  E-value=1e-08  Score=102.31  Aligned_cols=135  Identities=19%  Similarity=0.062  Sum_probs=93.6

Q ss_pred             EEEEEEEcCCCcEEEEEEeecccccc--------hHHHHHHHHHHHHHHhCCCCCc--ceeeEEEEe-----CCeEEEEE
Q 042772          321 SVHLVELQGAGELYAMKAMEKSVMLN--------RNKVHRACIEREIMSLLDHPFL--PTLYASFQT-----STHICLIT  385 (489)
Q Consensus       321 ~Vy~a~~~~tg~~vAiK~i~~~~~~~--------~~~~~~~~~E~~il~~l~HpnI--v~l~~~~~~-----~~~~~lVm  385 (489)
                      .|..++..  |+.|.+|.........        ......+.+|...+..|..-+|  +.++++...     ....++||
T Consensus        37 rvvr~~~~--g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVt  114 (268)
T PRK15123         37 RTLRFELA--GKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIIT  114 (268)
T ss_pred             eEEEEEEC--CEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEE
Confidence            45566553  6788999664321100        0011136678888877743333  233444432     23578999


Q ss_pred             ecCCCC-CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-------CCcEEEEecCCccc
Q 042772          386 DFCPGG-ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-------DGHVVLTDFDLSFM  457 (489)
Q Consensus       386 Ey~~gg-sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-------~g~vKL~DFGlS~~  457 (489)
                      |++++. +|.+++........+......++.+++..+.-||..||+|+|+++.|||++.       ++.+.|+||+.+..
T Consensus       115 e~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        115 EDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             eeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            999875 8999886432233566777889999999999999999999999999999985       46899999999864

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=3.9e-11  Score=131.99  Aligned_cols=152  Identities=24%  Similarity=0.331  Sum_probs=122.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcC-CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQG-AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~-tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..|.+.+.||+|+|+.|-+..... +...+|.|.+.... ...........|..+-+.+. |+|++++++........++
T Consensus        20 ~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~-~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   20 SQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPP-KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL   98 (601)
T ss_pred             ccccccccccccccchhhhhhhcCCCcceeeccCCCCCC-CccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence            358888899999999999988743 34566666665432 22333444555777777776 9999999999999999999


Q ss_pred             EEecCCCCCHHHHH-hhCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCeecCCCCCCEEEecCC-cEEEEecCCccccC
Q 042772          384 ITDFCPGGELFALL-DKQPMKIFREDSARFYAAEVVIGLEYLH-CLGIIYRDLKPENILLQKDG-HVVLTDFDLSFMTS  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L-~~~~~~~l~e~~~~~i~~qI~~aL~yLH-~~gIvHrDLKP~NILld~~g-~vKL~DFGlS~~~~  459 (489)
                      +++|..|++++..+ .... ...+...+..++.|+..++.|+| ..++.|||+||+|.+++..+ .+++.|||+|....
T Consensus        99 ~~~~s~g~~~f~~i~~~~~-~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~  176 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDS-TGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYR  176 (601)
T ss_pred             ccCcccccccccccccCCc-cCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhcccc
Confidence            99999999999988 4432 13677888899999999999999 99999999999999999999 99999999996443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.96  E-value=2.3e-09  Score=115.57  Aligned_cols=165  Identities=12%  Similarity=0.142  Sum_probs=127.0

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      |.+ ....-++.+....|..+.++..|.+...+.+..   .......+-.+-|+.++||||+++++.+..++.+|||+|-
T Consensus        15 Y~l-e~~~~~~~a~~~~~t~k~~~~~vsVF~~~~~~~---~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTEr   90 (690)
T KOG1243|consen   15 YDL-EETAFSSEALWPDGTRKADGGPVSVFVYKRSNG---EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTER   90 (690)
T ss_pred             ccc-ccccCCCcccccccceeccCCceEEEEEeCCCc---hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeec
Confidence            555 444445554443567777888999998876532   3345566677789999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-----
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH-CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-----  461 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH-~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-----  461 (489)
                      +  ..|..++++.     ....+..-+.||+.||.||| +.+++|++|.-.-|+++..|..||++|-++......     
T Consensus        91 V--~Pl~~~lk~l-----~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~  163 (690)
T KOG1243|consen   91 V--RPLETVLKEL-----GKEEVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAK  163 (690)
T ss_pred             c--ccHHHHHHHh-----HHHHHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccc
Confidence            8  4888888874     46777788899999999998 668999999999999999999999999887543321     


Q ss_pred             ----------Cceeecc----cccchHHHHHHHHhC
Q 042772          462 ----------PQVFYHA----HVNGFYFIMYKWLTG  483 (489)
Q Consensus       462 ----------~~~~~~~----~v~s~g~~a~e~~~G  483 (489)
                                |....++    |.|++|....+...|
T Consensus       164 ~~~~~~s~~~P~~~~~s~~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  164 SLYLIESFDDPEEIDPSEWSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             cchhhhcccChhhcCccccchhhhhHHHHHHHHhCc
Confidence                      2222223    677778888877777

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.92  E-value=8e-09  Score=97.65  Aligned_cols=128  Identities=22%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             EEEEEEcCCCcEEEEEEeecccccc-----------------------hHHHHHHHHHHHHHHhCCCC--CcceeeEEEE
Q 042772          322 VHLVELQGAGELYAMKAMEKSVMLN-----------------------RNKVHRACIEREIMSLLDHP--FLPTLYASFQ  376 (489)
Q Consensus       322 Vy~a~~~~tg~~vAiK~i~~~~~~~-----------------------~~~~~~~~~E~~il~~l~Hp--nIv~l~~~~~  376 (489)
                      ||.|... .|..+|+|.........                       .........|...|.++..-  ++++++++. 
T Consensus         2 Vy~~~~~-~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    2 VYHAIDP-DGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEC-TTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             EEEEECC-CCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            7888875 47899999885422111                       01134567799999999755  577777542 


Q ss_pred             eCCeEEEEEecCC--CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCeecCCCCCCEEEecCCcEEEEecC
Q 042772          377 TSTHICLITDFCP--GGELFALLDKQPMKIFREDSARFYAAEVVIGLEY-LHCLGIIYRDLKPENILLQKDGHVVLTDFD  453 (489)
Q Consensus       377 ~~~~~~lVmEy~~--ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~y-LH~~gIvHrDLKP~NILld~~g~vKL~DFG  453 (489)
                         ..+|||||++  |..+..+....    ++......++.+++..+.. +|+.||+|+||.+.|||++++ .+.|+|||
T Consensus        80 ---~~~ivME~I~~~G~~~~~l~~~~----~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~~-~~~iIDf~  151 (188)
T PF01163_consen   80 ---RNVIVMEYIGEDGVPLPRLKDVD----LSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDDG-KVYIIDFG  151 (188)
T ss_dssp             ---TTEEEEE--EETTEEGGCHHHCG----GGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEETT-CEEE--GT
T ss_pred             ---CCEEEEEecCCCccchhhHHhcc----ccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeecc-eEEEEecC
Confidence               2479999998  65565544322    1234455667778875555 579999999999999999877 89999999


Q ss_pred             CccccC
Q 042772          454 LSFMTS  459 (489)
Q Consensus       454 lS~~~~  459 (489)
                      .|....
T Consensus       152 qav~~~  157 (188)
T PF01163_consen  152 QAVDSS  157 (188)
T ss_dssp             TEEETT
T ss_pred             cceecC
Confidence            987655

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []

Probab=98.90  E-value=6e-09  Score=85.30  Aligned_cols=85  Identities=26%  Similarity=0.379  Sum_probs=65.7

Q ss_pred             EEEecHhhHHhcCCChhhhcCCC----ccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCcccccCCCH
Q 042772           92 IIFASDSFLELTEYTREEILGRN----CSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQ  167 (489)
Q Consensus        92 i~~~n~~~~~~~gy~~~e~~g~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (489)
                      |+|+|++|++++||+++|+ |..    ..-+..|+                                          ...
T Consensus         1 ~i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpd------------------------------------------D~~   37 (91)
T PF08447_consen    1 IIYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPD------------------------------------------DRE   37 (91)
T ss_dssp             -EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TT------------------------------------------THH
T ss_pred             CEEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHH------------------------------------------HHH
Confidence            7899999999999999999 655    22122232                                          344


Q ss_pred             HHHHHHHH-HHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeee
Q 042772          168 ATVSKIRD-AVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGV  219 (489)
Q Consensus       168 ~~~~~~~~-~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~  219 (489)
                      ...+.+++ +...+..++.++...++||+..|+.....|++|.+|+++.++|+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~~~~~~~d~~g~~~~~~Gv   90 (91)
T PF08447_consen   38 RVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEVRGRPIFDENGKPIRIIGV   90 (91)
T ss_dssp             HHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEEEEEEEETTTS-EEEEEEE
T ss_pred             HHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEE
Confidence            45566777 67888899999999999999999999999999999999999987

The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.

>PRK13560 hypothetical protein; Provisional

Probab=98.89  E-value=5.7e-09  Score=118.02  Aligned_cols=152  Identities=12%  Similarity=0.148  Sum_probs=107.6

Q ss_pred             chhHHHHHHHHHhhh----hHHHHHHhccCcEEEECCCCCCCCEEEe-cHhhHHhcCCChhhhcCCCccccccccchhhh
Q 042772           53 SWDRAERERDIRQGI----DLATTLERIEKNFVITDPRIPDNPIIFA-SDSFLELTEYTREEILGRNCSFLELTEYTREE  127 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~~~~~~i~~~-n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~  127 (489)
                      ..|+++|++.+++..    .+..+++.++.+++++|+   ++.|+++ |+++++++||+.+|++|++...+....     
T Consensus       314 ~~DITerk~~e~~L~~se~~l~~l~~~~~~~i~~~d~---~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~~~~-----  385 (807)
T PRK13560        314 ITDISGRRAAERELLEKEDMLRAIIEAAPIAAIGLDA---DGNICFVNNNAAERMLGWSAAEVMGKPLPGMDPEL-----  385 (807)
T ss_pred             EEechHHHHHHHHHHHHHHHHHHHHHhCcccEEEEcC---CCCEEEecCHHHHHHhCCCHHHHcCCCccccChhh-----
Confidence            358888887766543    477889999999999999   9999987 678888999999999999865433221     


Q ss_pred             hhccccccchhHHHHHHHhhhcccccccccCcccccCCCHH--HHHHHHHHHHcCCcEE-EEEEeeecCCCeeeEEEeec
Q 042772          128 ILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQA--TVSKIRDAVREQREIT-VQLINYTKSGKKFWNLFHLQ  204 (489)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~k~g~~~~~~~~~~  204 (489)
                                    ...+|...+..|.        +.....  ....+...+..++.+. .++...+++|..+|+.....
T Consensus       386 --------------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~  443 (807)
T PRK13560        386 --------------NEEFWCGDFQEWY--------PDGRPMAFDACPMAKTIKGGKIFDGQEVLIEREDDGPADCSAYAE  443 (807)
T ss_pred             --------------hhhhhhchhhhcC--------CcCCcchhhhhhHHHHHhcCCcccCceEEEEcCCCCeEEEEEEEe
Confidence                          0011211111110        000000  1112344455565543 46677899999999999999


Q ss_pred             ccccCCCCeeEEeeeeccCCcccccccccc
Q 042772          205 PMRDHKGELQYFIGVQLDGSDHVEPLRNRL  234 (489)
Q Consensus       205 p~~~~~g~~~~~~~~~~d~Te~ke~e~~~l  234 (489)
                      |++|.+|.+.+++++..|||++|+++++..
T Consensus       444 p~~d~~g~~~~~~~~~~DITerk~~E~~L~  473 (807)
T PRK13560        444 PLHDADGNIIGAIALLVDITERKQVEEQLL  473 (807)
T ss_pred             eeECCCCCEEEEEEEeehhhhHHHHHHHHH
Confidence            999999999999999999999998876654

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.88  E-value=4.6e-09  Score=111.67  Aligned_cols=128  Identities=23%  Similarity=0.347  Sum_probs=108.2

Q ss_pred             HHhCCCCCcceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-eecCCCCCC
Q 042772          360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGI-IYRDLKPEN  438 (489)
Q Consensus       360 l~~l~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gI-vHrDLKP~N  438 (489)
                      |+.+.|.|+.++++.+..+...++|.+||+.|+|.+.+..... .++..-...++.+++.||.|+|.--| .|+.|++.|
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~-~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~n   79 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDI-KLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSN   79 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhcccc-CccHHHHHHHHHHHHHHHHHHhcCcceeeeeecccc
Confidence            3567899999999999999999999999999999999987533 37788888899999999999997655 999999999


Q ss_pred             EEEecCCcEEEEecCCccccC-----------------CCCc-------------eeecccccchHHHHHHHHhCCcccC
Q 042772          439 ILLQKDGHVVLTDFDLSFMTS-----------------CKPQ-------------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       439 ILld~~g~vKL~DFGlS~~~~-----------------~~~~-------------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +++|....+||+|||+.....                 .+|+             .....|++++|.+++|+++-.-||.
T Consensus        80 Clvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~  159 (484)
T KOG1023|consen   80 CLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFD  159 (484)
T ss_pred             ceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccc
Confidence            999999999999999986652                 1111             1233588999999999999888885

>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya

Probab=98.83  E-value=8.8e-08  Score=72.75  Aligned_cols=102  Identities=25%  Similarity=0.417  Sum_probs=82.1

Q ss_pred             cCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccc
Q 042772           77 EKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFT  156 (489)
Q Consensus        77 ~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (489)
                      +.++++.|.   ++.++++|++|.+++||+.++++|++...+..+.                                  
T Consensus         2 ~~~i~~~d~---~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~----------------------------------   44 (103)
T cd00130           2 PDGVIVLDL---DGRILYANPAAEQLLGYSPEELIGKSLLDLIHPE----------------------------------   44 (103)
T ss_pred             CceEEEECC---CCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCc----------------------------------
Confidence            467899999   9999999999999999999999998865443332                                  


Q ss_pred             cCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccC
Q 042772          157 LGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDG  223 (489)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~  223 (489)
                              ........+..+.........++....++|...|......|+.+..|....++++..||
T Consensus        45 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di  103 (103)
T cd00130          45 --------DREELRERLENLLSGGEPVTLEVRLRRKDGSVIWVLVSLTPIRDEGGEVIGLLGVVRDI  103 (103)
T ss_pred             --------cchHHHHHHHHHHhcCcCeEEEEEEEccCCCEEEEEEEEEEEecCCCCEEEEEEEEecC
Confidence                    22234445566666566677788888889999999999999999989999999888875

Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional

Probab=98.78  E-value=2.7e-08  Score=101.66  Aligned_cols=115  Identities=11%  Similarity=0.132  Sum_probs=90.6

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHh
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      ..+.++++.+++++++.|+   ++.|+++|++|++++||+.++++|+++..+....                        
T Consensus         7 ~~~~~il~~~~~gi~~~d~---~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~------------------------   59 (348)
T PRK11073          7 PDAGQILNSLINSILLLDD---DLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYF------------------------   59 (348)
T ss_pred             chHHHHHhcCcCeEEEECC---CCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcc------------------------
Confidence            3578899999999999999   9999999999999999999999999987664221                        


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                                          ......+.+++..++.++..-..+.++|+++|..++.+|+.+     .+++...+|+|++
T Consensus        60 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~dit~~  114 (348)
T PRK11073         60 --------------------SLNIELMRESLQAGQGFTDNEVTLVIDGRSHILSLTAQRLPE-----GMILLEMAPMDNQ  114 (348)
T ss_pred             --------------------hhhHHHHHHHHHcCCcccccceEEEECCceEEEEEEEEEccC-----ceeEEEEechhHH
Confidence                                112234556676766666556667889999999999999972     3466778999988


Q ss_pred             ccccccc
Q 042772          227 VEPLRNR  233 (489)
Q Consensus       227 ke~e~~~  233 (489)
                      ++.+++.
T Consensus       115 ~~~~~~~  121 (348)
T PRK11073        115 RRLSQEQ  121 (348)
T ss_pred             HHHHHHH
Confidence            7765544

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=5.3e-09  Score=111.53  Aligned_cols=153  Identities=21%  Similarity=0.244  Sum_probs=124.5

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEc-CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeC
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQ-GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTS  378 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~-~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~  378 (489)
                      ....+.+|..+..||.|.|+.|+.+... .++..|++|.+.+.......++.. ..|+.+...+ .|.+++.++..|..-
T Consensus       260 ~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~s-l~ev~l~~~l~~~~~~~g~~~~W~~~  338 (524)
T KOG0601|consen  260 TSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFS-LGEVILEAILGSHLPSVGKNSSWSQL  338 (524)
T ss_pred             ceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcc-hhhhhHhhHhhcccccCCCCCCcccc
Confidence            4556788999999999999999998866 678899999887765554443322 3355555555 589999988888888


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-CcEEEEecCCcc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-GHVVLTDFDLSF  456 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-g~vKL~DFGlS~  456 (489)
                      .+.|+-.|||.++++.....-.  ..+++...+.+..|++.++.++|++.++|+|+||+||++..+ +..++.|||+..
T Consensus       339 r~~~ip~e~~~~~s~~l~~~~~--~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t  415 (524)
T KOG0601|consen  339 RQGYIPLEFCEGGSSSLRSVTS--QMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWT  415 (524)
T ss_pred             ccccCchhhhcCcchhhhhHHH--HhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhcccccccc
Confidence            8889999999999887666332  337888899999999999999999999999999999999876 778999999874

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.72  E-value=1.5e-07  Score=99.19  Aligned_cols=164  Identities=15%  Similarity=0.180  Sum_probs=124.3

Q ss_pred             CceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe----CCeEEEEEecCCC-CC
Q 042772          318 DTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT----STHICLITDFCPG-GE  392 (489)
Q Consensus       318 ~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----~~~~~lVmEy~~g-gs  392 (489)
                      .-.+.|++....+|..|++|.++-......+   ....-.++++++.|+|||.+.++|.+    +..+++|++|.|+ ++
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~n---k~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~T  364 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTN---KDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPT  364 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcc---cchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCch
Confidence            4468999999999999999999433222221   12234668999999999999999873    4579999999975 57


Q ss_pred             HHHHHhhC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          393 LFALLDKQ-------------PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       393 L~~~L~~~-------------~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      |.++--..             .+...+|..+|.++.|+..||.++|+.|+..+-|.|.+||++.+.+++|.--|+.-++.
T Consensus       365 L~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~  444 (655)
T KOG3741|consen  365 LYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVTGKMRIRISGCGIMDVLQ  444 (655)
T ss_pred             HHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEeeCcceEEEecccceeeec
Confidence            77664221             12236789999999999999999999999999999999999988889998888776665


Q ss_pred             CCC-ce---eecccccchHHHHHHHHhCC
Q 042772          460 CKP-QV---FYHAHVNGFYFIMYKWLTGY  484 (489)
Q Consensus       460 ~~~-~~---~~~~~v~s~g~~a~e~~~G~  484 (489)
                      ..+ ..   ....|..-+|..+--+++|+
T Consensus       445 ~d~~~~le~~Qq~D~~~lG~ll~aLAt~~  473 (655)
T KOG3741|consen  445 EDPTEPLESQQQNDLRDLGLLLLALATGT  473 (655)
T ss_pred             CCCCcchhHHhhhhHHHHHHHHHHHhhcc
Confidence            554 11   12335556788877777774

>PRK11360 sensory histidine kinase AtoS; Provisional

Probab=98.69  E-value=1.7e-07  Score=101.61  Aligned_cols=119  Identities=15%  Similarity=0.089  Sum_probs=93.6

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      .+..+++.++++++++|.   ++.|+++|++|++++||++++++|+++..+..+.                         
T Consensus       263 ~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~-------------------------  314 (607)
T PRK11360        263 LNELILESIADGVIAIDR---QGKITTMNPAAEVITGLQRHELVGKPYSELFPPN-------------------------  314 (607)
T ss_pred             HHHHHHHhccCeEEEEcC---CCCEEEECHHHHHHhCCChHHhcCCcHHHHcCCc-------------------------
Confidence            456788999999999999   9999999999999999999999999977654321                         


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEE-EEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREIT-VQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                                         ......+.+.+..+.... .++...+++|..+ +.++..|++|.+|++.+++++..|+|++
T Consensus       315 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~g~~~~~i~~~~Dite~  374 (607)
T PRK11360        315 -------------------TPFASPLLDTLEHGTEHVDLEISFPGRDRTIE-LSVSTSLLHNTHGEMIGALVIFSDLTER  374 (607)
T ss_pred             -------------------hhHHHHHHHHHhcCCCccceEEEEEcCCCcEE-EEEEEeeEEcCCCCEEEEEEEEeechHH
Confidence                               222334555555555443 3444556677665 8999999999999999999999999999


Q ss_pred             cccccccc
Q 042772          227 VEPLRNRL  234 (489)
Q Consensus       227 ke~e~~~l  234 (489)
                      ++.+++..
T Consensus       375 ~~~e~~l~  382 (607)
T PRK11360        375 KRLQRRVA  382 (607)
T ss_pred             HHHHHHHH
Confidence            98776543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.67  E-value=2.3e-07  Score=88.84  Aligned_cols=108  Identities=27%  Similarity=0.260  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhCCCC--CcceeeEEEEeC----CeEEEEEecCCCC-CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH
Q 042772          350 VHRACIEREIMSLLDHP--FLPTLYASFQTS----THICLITDFCPGG-ELFALLDKQPMKIFREDSARFYAAEVVIGLE  422 (489)
Q Consensus       350 ~~~~~~E~~il~~l~Hp--nIv~l~~~~~~~----~~~~lVmEy~~gg-sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~  422 (489)
                      ..+..+|...+..|..-  .++.++++....    ...++|||++++. +|.+++.....  .+......++.+++..+.
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~~~i~  132 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALARLIA  132 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHHHHHH
Confidence            34566787777766432  344555554432    2468999999874 89999887432  566777888999999999


Q ss_pred             HHHHCCCeecCCCCCCEEEecCC---cEEEEecCCccccC
Q 042772          423 YLHCLGIIYRDLKPENILLQKDG---HVVLTDFDLSFMTS  459 (489)
Q Consensus       423 yLH~~gIvHrDLKP~NILld~~g---~vKL~DFGlS~~~~  459 (489)
                      -||..||+|+|++|.|||++.++   .+.++||+-++...
T Consensus       133 ~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  133 KLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             HHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence            99999999999999999999887   89999999887654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional

Probab=98.66  E-value=7.3e-08  Score=109.52  Aligned_cols=116  Identities=22%  Similarity=0.357  Sum_probs=87.1

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      +..+++..+.+++++|.   ++.|+++|++|++++||+++|++|++...+..+.                          
T Consensus        14 ~~~~le~~~~~i~~~d~---~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~--------------------------   64 (799)
T PRK11359         14 FFPALEQNMMGAVLINE---NDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRD--------------------------   64 (799)
T ss_pred             HHHHHHhhcCcEEEEcC---CCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCcc--------------------------
Confidence            46788999999999999   9999999999999999999999999987665443                          


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHc----CCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVRE----QREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                      ........++.....    ...+..++..+++||+.+|..+.+.|+. ..|. .+++++.+|+|
T Consensus        65 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~~~-~~g~-~~~~~~~~DiT  126 (799)
T PRK11359         65 ----------------LRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKVS-AEGK-VYYLALVRDAS  126 (799)
T ss_pred             ----------------ccccchHHHhhhhccCCccccccceeeEEecCCcCEEEEEEEeeeec-cCCc-eEEEEEEeecc
Confidence                            111111222222222    2234557888999999999999999874 4455 56889999999


Q ss_pred             ccccccc
Q 042772          225 DHVEPLR  231 (489)
Q Consensus       225 e~ke~e~  231 (489)
                      ++++.++
T Consensus       127 ~~~~~~~  133 (799)
T PRK11359        127 VEMAQKE  133 (799)
T ss_pred             chhhhHH
Confidence            9776543

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.66  E-value=6.7e-08  Score=104.29  Aligned_cols=149  Identities=22%  Similarity=0.273  Sum_probs=97.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc---------------------------hHHH----HH-
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN---------------------------RNKV----HR-  352 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~---------------------------~~~~----~~-  352 (489)
                      ...|.. ++|+.++-|+||.|..+. |+.||||+..+.....                           ...+    +. 
T Consensus       125 F~eF~~-~PiAsASIaQVH~A~L~s-G~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l  202 (517)
T COG0661         125 FSEFEP-EPIASASIAQVHRAVLKS-GEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRL  202 (517)
T ss_pred             HHHcCC-CchhhhhHhhheeEEecC-CCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHH
Confidence            444544 789999999999999986 9999999986643210                           0001    11 


Q ss_pred             -----HHHHHHHHHhC-----CCCCcceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHH-H
Q 042772          353 -----ACIEREIMSLL-----DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG-L  421 (489)
Q Consensus       353 -----~~~E~~il~~l-----~HpnIv~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~a-L  421 (489)
                           +.+|..-+.++     +.|++.-..=+++..+.-.|+|||++|..+.+...-.. ..++...+...   ++.+ +
T Consensus       203 ~~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~---~~~~f~  278 (517)
T COG0661         203 REELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKS-AGIDRKELAEL---LVRAFL  278 (517)
T ss_pred             HHHhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHH---HHHHHH
Confidence                 22333333333     24554433334454566789999999999988743221 22443333322   2222 3


Q ss_pred             HHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       422 ~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..+-..|++|.|..|.||+++.+|.+.+.|||+....+
T Consensus       279 ~q~~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         279 RQLLRDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             HHHHhcCccccCCCccceEEecCCcEEEEcCcceecCC
Confidence            34445899999999999999999999999999986554

>PRK09902 hypothetical protein; Provisional

Probab=98.63  E-value=5.8e-07  Score=86.19  Aligned_cols=141  Identities=13%  Similarity=0.146  Sum_probs=102.3

Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEEeecccc---cchHHHHHHHHHHHHHHhCCCC--CcceeeEEEEe----CCeEEEEE
Q 042772          315 GCGDTGSVHLVELQGAGELYAMKAMEKSVM---LNRNKVHRACIEREIMSLLDHP--FLPTLYASFQT----STHICLIT  385 (489)
Q Consensus       315 G~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~---~~~~~~~~~~~E~~il~~l~Hp--nIv~l~~~~~~----~~~~~lVm  385 (489)
                      |+|+-+.|+.....+  +.+=+|.......   ..+.....+.+|...+..|..-  .++.+...-..    .-..+||+
T Consensus        27 ~rgG~SgV~r~~~~g--~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LVT  104 (216)
T PRK09902         27 RRNGMSGVQCVERNG--KKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVT  104 (216)
T ss_pred             CCCCcceEEEEEeCC--cEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEEE
Confidence            568888899877664  3577776642111   1133557788999999888532  24555422111    12578999


Q ss_pred             ecCCC-CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc--EEEEecCCccc
Q 042772          386 DFCPG-GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH--VVLTDFDLSFM  457 (489)
Q Consensus       386 Ey~~g-gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~--vKL~DFGlS~~  457 (489)
                      |-++| -+|.+++........++.....++.+++..+.-||+.|+.|+|+-+.||+++.+|.  ++++||--++.
T Consensus       105 e~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        105 EDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             EeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            98853 58988887654444577777889999999999999999999999999999987777  99999988763

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR

Probab=98.62  E-value=8.7e-08  Score=96.09  Aligned_cols=106  Identities=11%  Similarity=0.035  Sum_probs=80.4

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHh
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      ..+..+++.+++++++.|+   ++.|+|+|++|++++||+++|++|+++..+..+                         
T Consensus         6 ~~l~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~-------------------------   57 (333)
T TIGR02966         6 SRFRAAAQALPDAVVVLDE---EGQIEWCNPAAERLLGLRWPDDLGQRITNLIRH-------------------------   57 (333)
T ss_pred             HHHHHHHHhCcCcEEEECC---CCcEEEEcHHHHHHhCCChHHHcCCcHHHHccC-------------------------
Confidence            4478999999999999999   999999999999999999999999987644322                         


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                                          ......+..... ..+    +....++|...|+.+.++|+.+..     ++++..|+|+.
T Consensus        58 --------------------~~~~~~l~~~~~-~~~----~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~dit~~  107 (333)
T TIGR02966        58 --------------------PEFVEYLAAGRF-SEP----LELPSPINSERVLEIRIAPYGEEQ-----KLLVARDVTRL  107 (333)
T ss_pred             --------------------HHHHHHHHhccc-CCC----eEeecCCCCceEEEEEEEEcCCCc-----eEEEEeCchHH
Confidence                                222222222221 222    333358999999999999998753     77889999987


Q ss_pred             cccc
Q 042772          227 VEPL  230 (489)
Q Consensus       227 ke~e  230 (489)
                      ++.+
T Consensus       108 ~~~~  111 (333)
T TIGR02966       108 RRLE  111 (333)
T ss_pred             HHHH
Confidence            7654

Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.59  E-value=4.1e-07  Score=89.62  Aligned_cols=139  Identities=21%  Similarity=0.204  Sum_probs=99.1

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc------chH-------------HHHHHHHHHHHHHhCCCC--
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML------NRN-------------KVHRACIEREIMSLLDHP--  366 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~------~~~-------------~~~~~~~E~~il~~l~Hp--  366 (489)
                      ..+...||-|--+.||.|.+. .|..+|+|.-......      .+.             ......+|.++|.+|..-  
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~-~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~  171 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDP-KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGV  171 (304)
T ss_pred             HhhccccccCccceEEEEECC-CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCC
Confidence            456688999999999999987 4889999954321110      011             123456788899988643  


Q ss_pred             CcceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc
Q 042772          367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH  446 (489)
Q Consensus       367 nIv~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~  446 (489)
                      .|++.+++    +...+||||++|-.|...-       ++......++..|+.-+.-+-..|+||+|+.+-||+++++|.
T Consensus       172 ~VP~P~~~----nRHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~dg~  240 (304)
T COG0478         172 KVPKPIAW----NRHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGD  240 (304)
T ss_pred             CCCCcccc----ccceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEecCCC
Confidence            78888764    4678999999887765432       122333344445555555555899999999999999999999


Q ss_pred             EEEEecCCcccc
Q 042772          447 VVLTDFDLSFMT  458 (489)
Q Consensus       447 vKL~DFGlS~~~  458 (489)
                      +.++||--+...
T Consensus       241 ~~vIDwPQ~v~~  252 (304)
T COG0478         241 IVVIDWPQAVPI  252 (304)
T ss_pred             EEEEeCcccccC
Confidence            999999766543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=4.2e-08  Score=104.78  Aligned_cols=151  Identities=23%  Similarity=0.240  Sum_probs=120.7

Q ss_pred             cCcccccccCC--CCceEEEEEEE--cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCe
Q 042772          306 HHFKPIKPLGC--GDTGSVHLVEL--QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTH  380 (489)
Q Consensus       306 ~~y~~~~~LG~--G~fG~Vy~a~~--~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~  380 (489)
                      ..|.+...+|.  |.+|.||.+..  ..++..+|+|.-+... .....-.+-.+|...-++++ |+|.++.+..+...+.
T Consensus       114 ~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~-s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~  192 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPF-SPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGI  192 (524)
T ss_pred             hhcccccccccCCCCCceeecccCCcccCCcccccccccCCC-CCccccccccchhhcccccCccccccccCcccccCCc
Confidence            45778889999  99999999998  8889999999743221 11122222334555555554 9999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHH----HHHHHHHCCCeecCCCCCCEEEecC-CcEEEEecCCc
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI----GLEYLHCLGIIYRDLKPENILLQKD-GHVVLTDFDLS  455 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~----aL~yLH~~gIvHrDLKP~NILld~~-g~vKL~DFGlS  455 (489)
                      +|+-+|+| +.+|.++...- ..-+++..++..+.+...    ||.++|+.+++|-|+||.||++..+ ..++++|||+.
T Consensus       193 lfiqtE~~-~~sl~~~~~~~-~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v  270 (524)
T KOG0601|consen  193 LFIQTELC-GESLQSYCHTP-CNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLV  270 (524)
T ss_pred             ceeeeccc-cchhHHhhhcc-cccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCccee
Confidence            99999999 57888887654 233788889999999998    9999999999999999999999999 88999999998


Q ss_pred             cccC
Q 042772          456 FMTS  459 (489)
Q Consensus       456 ~~~~  459 (489)
                      ....
T Consensus       271 ~~i~  274 (524)
T KOG0601|consen  271 SKIS  274 (524)
T ss_pred             EEcc
Confidence            6544

>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR

Probab=98.51  E-value=1.6e-07  Score=99.88  Aligned_cols=112  Identities=15%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             HHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccc
Q 042772           73 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGV  152 (489)
Q Consensus        73 ~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (489)
                      ++.+.+++++.|.   +|.|++||++|.+++||+++|++|++...+..++                              
T Consensus         2 ~~~~~d~~~~~d~---~g~i~~~n~~~~~~~g~~~~el~G~~~~~~~~~~------------------------------   48 (442)
T TIGR02040         2 LATAADVTLLLDA---EGVVREVAANPHHPSFEQLSEWEGRRWEEIVTAE------------------------------   48 (442)
T ss_pred             CcccCcEEEEECC---CCcEEEEEECCCcccccccccCCCCcHhHhhCcc------------------------------
Confidence            5678899999999   9999999999999999999999999987666553                              


Q ss_pred             cccccCcccccCCCHHHHHHHHHHHHcCC-cEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccccccc
Q 042772          153 YNFTLGCCLEISSDQATVSKIRDAVREQR-EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLR  231 (489)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~e~  231 (489)
                                  ........+..+...+. .+.+++....++|..+|+.++..|+.+..    +++++.+|+|+.++.++
T Consensus        49 ------------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~----~~~~i~rDi~~~~~~~~  112 (442)
T TIGR02040        49 ------------SVEKFELRLSEALRTGRGAVRVELNHIDPSSFELPMRFILVRLGADR----GVLALGRDLRAVAELQQ  112 (442)
T ss_pred             ------------hHHHHHHHHHHHhccCCCcceEeeccCCCCCCccCeEEEEEEeCCCC----eEEEEecccHHHHHHHH
Confidence                        22333445556565554 45566555567777788888777765532    56788999999887544


Q ss_pred             cc
Q 042772          232 NR  233 (489)
Q Consensus       232 ~~  233 (489)
                      +.
T Consensus       113 ~l  114 (442)
T TIGR02040       113 QL  114 (442)
T ss_pred             HH
Confidence            43

This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=4.3e-08  Score=103.26  Aligned_cols=78  Identities=23%  Similarity=0.337  Sum_probs=68.4

Q ss_pred             CeEEEEEecCCCCCHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          379 THICLITDFCPGGELFALLDKQ-PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~-~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      .++|+.|++|...+|.++|.+. .....+......++.|++.|++|   +|.+|||+||.||+...+..+||.|||+...
T Consensus       329 ~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts  405 (516)
T KOG1033|consen  329 VYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTS  405 (516)
T ss_pred             cchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchhhhccccccccccchhhhhhhhhheee
Confidence            3689999999999999999754 33346778889999999999999   9999999999999999999999999999865


Q ss_pred             cC
Q 042772          458 TS  459 (489)
Q Consensus       458 ~~  459 (489)
                      ..
T Consensus       406 ~~  407 (516)
T KOG1033|consen  406 QD  407 (516)
T ss_pred             cc
Confidence            44

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.38  E-value=6e-06  Score=79.63  Aligned_cols=143  Identities=21%  Similarity=0.267  Sum_probs=90.5

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHH------HHHHHHHHhC---CCCCcceeeE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRA------CIEREIMSLL---DHPFLPTLYA  373 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~------~~E~~il~~l---~HpnIv~l~~  373 (489)
                      +...+|...+.+-.....-|.+....  |..+++|...............+      .+.+..+..+   .--....++.
T Consensus        28 i~~~~~~~~kv~k~~~r~~ValIei~--~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl  105 (229)
T PF06176_consen   28 ILDNNYKIIKVFKNTKRNYVALIEID--GKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYL  105 (229)
T ss_pred             HHhCCceEEEeecCCCccEEEEEEEC--CcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCcccccccee
Confidence            34467888888888877777776654  68899997754322111111111      1122222222   1122223222


Q ss_pred             EEE-----eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEE
Q 042772          374 SFQ-----TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV  448 (489)
Q Consensus       374 ~~~-----~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vK  448 (489)
                      +..     -....+++|||++|..|.++..      +++.    +...+..++.-||+.|++|+|..|.|+++++++ ++
T Consensus       106 ~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~------i~e~----~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~~~~-i~  174 (229)
T PF06176_consen  106 AAEKKIFRYTSSYVLLMEYIEGVELNDIED------IDED----LAEKIVEAIKQLHKHGFYHGDPHPGNFLVSNNG-IR  174 (229)
T ss_pred             eeeeeeccceeEEEEEEEEecCeecccchh------cCHH----HHHHHHHHHHHHHHcCCccCCCCcCcEEEECCc-EE
Confidence            222     2234678999999988876542      2332    345577889999999999999999999998554 99


Q ss_pred             EEecCCcccc
Q 042772          449 LTDFDLSFMT  458 (489)
Q Consensus       449 L~DFGlS~~~  458 (489)
                      ++||+..+.+
T Consensus       175 iID~~~k~~~  184 (229)
T PF06176_consen  175 IIDTQGKRMS  184 (229)
T ss_pred             EEECcccccc
Confidence            9999887654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms]

Probab=98.34  E-value=2.3e-07  Score=94.93  Aligned_cols=110  Identities=17%  Similarity=0.309  Sum_probs=94.6

Q ss_pred             hhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHH
Q 042772           66 GIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      ...+-++||....+|-|+|.   |..|.|||+||+.++||-+.|++|+....|.-...                      
T Consensus       156 cnalFaaLD~c~eAiEI~~d---dhViQYVNpAfE~mmG~hkgEliGke~adlpkkdk----------------------  210 (775)
T KOG1229|consen  156 CNALFAALDECDEAIEICDD---DHVIQYVNPAFENMMGCHKGELIGKEEADLPKKDK----------------------  210 (775)
T ss_pred             hHHHHHHHhhhhhhheeccc---hhHHHHhcHHHHhhhcchhhhhcCCchhhcccccc----------------------
Confidence            44578899999999999999   99999999999999999999999999877754431                      


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeee
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGV  219 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~  219 (489)
                                         .......-|-..+..+.+++++-..+||+|..---.+.++|+-+..|++.+|+..
T Consensus       211 -------------------nradlldtintcikkgke~qG~~~aRRksgdS~dqh~~itP~~gqggkirhfvsl  265 (775)
T KOG1229|consen  211 -------------------NRADLLDTINTCIKKGKEAQGEEEARRKSGDSCDQHFIITPFAGQGGKIRHFVSL  265 (775)
T ss_pred             -------------------chhhhhhhhhHhhhcCccccchHHHhhccCCcccceEEEeeecCCCCceeeehhh
Confidence                               2334456678888999999999999999999887789999999999999999764

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.30  E-value=9.9e-06  Score=79.13  Aligned_cols=139  Identities=22%  Similarity=0.169  Sum_probs=97.3

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchH-------------------H--HHHHHHHHHHHHhCC--CCCc
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-------------------K--VHRACIEREIMSLLD--HPFL  368 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~-------------------~--~~~~~~E~~il~~l~--HpnI  368 (489)
                      ..|.+|--+.||+|.. ..+..+|+|++.......+.                   .  ......|..-|+++.  +-.+
T Consensus        54 g~istGKEA~Vy~a~~-~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrv  132 (268)
T COG1718          54 GCISTGKEANVYLAET-GDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRV  132 (268)
T ss_pred             eeecCCcceEEEeecc-CCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3788899999999986 45889999998654332211                   1  122344666677663  5567


Q ss_pred             ceeeEEEEeCCeEEEEEecCCCC-CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCc
Q 042772          369 PTLYASFQTSTHICLITDFCPGG-ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGH  446 (489)
Q Consensus       369 v~l~~~~~~~~~~~lVmEy~~gg-sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~  446 (489)
                      ++.+.+.    ...|||||+... .-.-.|+.-   .+....+..+..+++..+.-|-+ .++||+||+.-|||+. ++.
T Consensus       133 P~Pi~~~----~nVLvMEfIg~~g~pAP~LkDv---~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~~~  204 (268)
T COG1718         133 PEPIAFR----NNVLVMEFIGDDGLPAPRLKDV---PLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-DGE  204 (268)
T ss_pred             CCceeec----CCeEEEEeccCCCCCCCCcccC---CcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-CCe
Confidence            7777654    357999999542 111112221   12333677788889999998887 8999999999999999 889


Q ss_pred             EEEEecCCccccC
Q 042772          447 VVLTDFDLSFMTS  459 (489)
Q Consensus       447 vKL~DFGlS~~~~  459 (489)
                      +.|+|||-|....
T Consensus       205 p~iID~~QaV~~~  217 (268)
T COG1718         205 PYIIDVSQAVTID  217 (268)
T ss_pred             EEEEECccccccC
Confidence            9999999986554

>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D

Probab=98.27  E-value=5.2e-06  Score=70.47  Aligned_cols=106  Identities=20%  Similarity=0.279  Sum_probs=74.3

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      |...|+.++.++++.|.   ++.|.|.|++..++++.+. ..+||+..-+..+.                          
T Consensus         1 L~~il~s~~~~i~~vD~---~~~I~~~n~~a~~~f~~~~-~~iGr~l~~~~~~~--------------------------   50 (106)
T PF13596_consen    1 LNNILDSMPIGIIFVDR---NLRIRYFNPAAARLFNLSP-SDIGRPLFDIHPPL--------------------------   50 (106)
T ss_dssp             HHHHHHHSSSEEEEEET---TSBEEEE-SCGC-SS---G-GGTTSBCCCSS-HH--------------------------
T ss_pred             ChHHHhcCCCCEEEEcC---CCeEEEeChhHhhhcCCCh-HHCCCCHHHcCCcc--------------------------
Confidence            46789999999999999   9999999999999999764 55799987665442                          


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                       ....+..+.+.+..++.-..+... .++|  .|....+.|++|.+|+..+++.+..|||
T Consensus        51 -----------------~~~~l~~~i~~~~~~~~~~~~~~~-~~~~--~~~~~~~~P~~~~~g~~~G~v~~~~DIT  106 (106)
T PF13596_consen   51 -----------------SYPNLKKIIEQVRSGKEEEFEIVI-PNGG--RWYLVRYRPYRDEDGEYAGAVITFQDIT  106 (106)
T ss_dssp             -----------------HHHHHHHHHHHHHTTSBSEEEEEE-EETT--EEEEEEEEEEE-TTS-EEEEEEEEEE-G
T ss_pred             -----------------chHHHHHHHHHHHcCCCceEEEEe-cCCC--EEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence                             334455555666667654444333 3555  4667899999999999999999999997

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.26  E-value=1.1e-07  Score=106.83  Aligned_cols=150  Identities=26%  Similarity=0.321  Sum_probs=122.6

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ...+.+.+.+.+-+|.++.++.+.-..+|...++|......+...+.......+..++....||.++...-.+......+
T Consensus       801 sS~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~  880 (1205)
T KOG0606|consen  801 SSPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLP  880 (1205)
T ss_pred             CCCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcc
Confidence            34567888999999999999999988888877877766554444444555555555555556788877766666667899


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                      |+|+|+.+++|...|+..+  +.+++.++.+...+..+.+|||...+.|||++|.|.++..+|+.+++|||.
T Consensus       881 L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t  950 (1205)
T KOG0606|consen  881 LVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGT  950 (1205)
T ss_pred             hhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCcccc
Confidence            9999999999999998764  467888888888999999999999999999999999999999999999983

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.26  E-value=5.5e-06  Score=89.54  Aligned_cols=140  Identities=23%  Similarity=0.287  Sum_probs=92.6

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccc--hH--------------------------HHHH------HHHHH
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN--RN--------------------------KVHR------ACIER  357 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~--~~--------------------------~~~~------~~~E~  357 (489)
                      ++||.-+.|+||+|+.+. |+.||+|+.++.....  .+                          ....      |..|.
T Consensus       167 ~piaaASlaQVhrA~L~~-G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKN-GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             chhhhcchhheEEEEecC-CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            789999999999999998 9999999887643211  00                          0001      12222


Q ss_pred             H----HHHhCCCCC------cceeeEEEEeCCeEEEEEecCCCCCHHHH--HhhCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 042772          358 E----IMSLLDHPF------LPTLYASFQTSTHICLITDFCPGGELFAL--LDKQPMKIFREDSARFYAAEVVIG-LEYL  424 (489)
Q Consensus       358 ~----il~~l~Hpn------Iv~l~~~~~~~~~~~lVmEy~~ggsL~~~--L~~~~~~~l~e~~~~~i~~qI~~a-L~yL  424 (489)
                      +    +.+.+.|-+      |+++|..+.  ..-.|+||||+|..+.+.  |++.+   ++...+...   +.++ ..-|
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~s--t~RVLtME~~~G~~i~Dl~~i~~~g---i~~~~i~~~---l~~~~~~qI  317 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWDLS--TKRVLTMEYVDGIKINDLDAIDKRG---ISPHDILNK---LVEAYLEQI  317 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhhcC--cceEEEEEecCCccCCCHHHHHHcC---CCHHHHHHH---HHHHHHHHH
Confidence            2    233344555      666665443  346899999999877654  44432   455543333   3332 2334


Q ss_pred             HHCCCeecCCCCCCEEEec----CCcEEEEecCCccccCC
Q 042772          425 HCLGIIYRDLKPENILLQK----DGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       425 H~~gIvHrDLKP~NILld~----~g~vKL~DFGlS~~~~~  460 (489)
                      -..|++|.|=.|.||++..    ++.+.+.|||+....+.
T Consensus       318 f~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  318 FKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             HhcCCccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            4689999999999999984    67899999999876653

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.25  E-value=1.5e-05  Score=77.65  Aligned_cols=136  Identities=10%  Similarity=0.043  Sum_probs=83.0

Q ss_pred             cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCC--CcceeeEEEEeCCeEEEEEecCC
Q 042772          312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP--FLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp--nIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      ..||+|..+.||+.    .+..+++|......     ......+|.++++.+..-  .+++.+.+....+...+|||+++
T Consensus         7 ~~i~~G~t~~~y~~----~~~~~VlR~~~~~~-----~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~   77 (226)
T TIGR02172         7 TQTGEGGNGESYTH----KTGKWMLKLYNPGF-----DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIV   77 (226)
T ss_pred             eeecCCCCcceeEe----cCCCEEEEeCCCCC-----CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecC
Confidence            57899999999984    24467788775432     123457799999887533  35677777777777899999998


Q ss_pred             CCC-HH--------------HHH-------hhCCCCCCCHHH-HHHHHHH----------HHH-HHHHHH----HCCCee
Q 042772          390 GGE-LF--------------ALL-------DKQPMKIFREDS-ARFYAAE----------VVI-GLEYLH----CLGIIY  431 (489)
Q Consensus       390 ggs-L~--------------~~L-------~~~~~~~l~e~~-~~~i~~q----------I~~-aL~yLH----~~gIvH  431 (489)
                      |.+ +.              ..+       +..+........ ...+..+          +.. ...+|.    ...++|
T Consensus        78 G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~H  157 (226)
T TIGR02172        78 GKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLH  157 (226)
T ss_pred             CccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEe
Confidence            863 11              111       111000011010 0111000          111 122222    124789


Q ss_pred             cCCCCCCEEEecCCcEEEEecCCccc
Q 042772          432 RDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       432 rDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      +|+.|.||++++++ +.|+||+.+..
T Consensus       158 gD~~~~Nii~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       158 GDFQIGNLITSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             cCCCCCcEEEcCCC-cEEEechhcCc
Confidence            99999999999888 99999998864

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL

Probab=98.18  E-value=1.9e-06  Score=91.26  Aligned_cols=130  Identities=14%  Similarity=0.097  Sum_probs=85.6

Q ss_pred             hhHHHHHHHHHhh----hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhh
Q 042772           54 WDRAERERDIRQG----IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEIL  129 (489)
Q Consensus        54 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~  129 (489)
                      .|++++++.+++.    ..+..+++.++.++++.|+   ++.|+++|++|++++|+...+..+.....+..+.       
T Consensus       113 ~DIt~~k~~e~~l~~~~~~~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~-------  182 (494)
T TIGR02938       113 RDITELHRLEQVVANQKLLIESVVDAAPVAFVLLDP---TGRVILDNQEYKKLATDLRVKEPAHTVLDLLREA-------  182 (494)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcccceEEEEcC---CCCEEEechhHHHhhchhhhhHHHHHHHHHhhHH-------
Confidence            5888877766543    3467888999999999999   9999999999999999999887765432111111       


Q ss_pred             ccccccchhHHHHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEE-EEEeeecCCC-eeeEEEeecccc
Q 042772          130 GRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITV-QLINYTKSGK-KFWNLFHLQPMR  207 (489)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~g~-~~~~~~~~~p~~  207 (489)
                                                          ....   +.+....+..+.. +....+++|. ..|......|+.
T Consensus       183 ------------------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (494)
T TIGR02938       183 ------------------------------------WREA---LAENWPQQLAFSNREARFDRGGGRPARWLSCTGSVIG  223 (494)
T ss_pred             ------------------------------------hhhh---hhhcchhhhccccceeeeccCCCceeeEEEecCceEE
Confidence                                                0000   1111111111222 2222344545 789999999988


Q ss_pred             cCCCCee---------EEeeeeccCCcccccccc
Q 042772          208 DHKGELQ---------YFIGVQLDGSDHVEPLRN  232 (489)
Q Consensus       208 ~~~g~~~---------~~~~~~~d~Te~ke~e~~  232 (489)
                      +..|.+.         +++++.+|||++++++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~DITe~k~~ee~  257 (494)
T TIGR02938       224 MESDCADSFFCAAEQPYLLLTIADISNLREEQER  257 (494)
T ss_pred             eecchhhheeccCCCchheehHHHHHHHHHHHHH
Confidence            7776653         456688999999987764

NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.

>PF12860 PAS_7: PAS fold

Probab=98.18  E-value=5.1e-06  Score=71.55  Aligned_cols=114  Identities=19%  Similarity=0.270  Sum_probs=78.4

Q ss_pred             HHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhh-cCCCccccccccchhhhhhccccccchhHHHHHHHhhhccc
Q 042772           73 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEI-LGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYG  151 (489)
Q Consensus        73 ~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (489)
                      ||+++.||++-|+   ++.++++|++|.+++|++.+.+ .|.+..-+...                      ....+.+.
T Consensus         1 Ld~l~~Gv~v~D~---~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~----------------------~~~~g~~~   55 (115)
T PF12860_consen    1 LDSLPQGVAVFDS---DGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRR----------------------LAERGEFP   55 (115)
T ss_pred             CCCcCceEEEEcC---CCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHH----------------------HHHcCCCC
Confidence            5788999999999   9999999999999999999998 78886533211                      00111111


Q ss_pred             ccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccccccc
Q 042772          152 VYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLR  231 (489)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~e~  231 (489)
                                 +....+.+...............++  ...||.  |+.+..+|+-|  |   ++|.+..|||+.+++|+
T Consensus        56 -----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dgr--~l~~~~~~~~~--G---g~v~~~~DVT~~~~~E~  115 (115)
T PF12860_consen   56 -----------PGDPEAWVRQRLARLRRRQPRSFEL--RLPDGR--WLEVRAQPLPD--G---GFVLTFTDVTERRRAEE  115 (115)
T ss_pred             -----------CCCHHHHHHHHHHHHhcCCCceeEE--ECCCCE--EEEEEeEECCC--C---CEEEEEEeCCHHHHhcC
Confidence                       0123344444444455555555553  357886  67788888844  4   58899999999998764

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.13  E-value=4.5e-05  Score=72.53  Aligned_cols=141  Identities=24%  Similarity=0.304  Sum_probs=82.5

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCC--CcceeeEEEEe---CCeEEEEE
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP--FLPTLYASFQT---STHICLIT  385 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp--nIv~l~~~~~~---~~~~~lVm  385 (489)
                      ++.|+.|..+.||++....  ..+++|.....     .....+..|..+++.+...  .+++++.....   ....+++|
T Consensus         2 i~~l~~G~~n~~~~v~~~~--~~~vlK~~~~~-----~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~   74 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD--GRYVLKFYRPP-----DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLM   74 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT--SEEEEEEESSH-----HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEE
T ss_pred             CccCCCCCeeeEEEEEECC--cEEEEEEeCCC-----CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEE
Confidence            4678999999999999775  47889986433     3345666788888877422  35667664432   34579999


Q ss_pred             ecCCCCCHHH----------------HHh---hC--CCCCCCHHH---HH---H---H------------HHHHHH-HHH
Q 042772          386 DFCPGGELFA----------------LLD---KQ--PMKIFREDS---AR---F---Y------------AAEVVI-GLE  422 (489)
Q Consensus       386 Ey~~ggsL~~----------------~L~---~~--~~~~l~e~~---~~---~---i------------~~qI~~-aL~  422 (489)
                      ++++|.++..                .+.   ..  ....+....   ..   .   .            ...+.. .+.
T Consensus        75 ~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
T PF01636_consen   75 EYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQ  154 (239)
T ss_dssp             EEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             EEeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHH
Confidence            9999988877                111   11  111111110   00   0   0            011111 233


Q ss_pred             HHH-------HCCCeecCCCCCCEEEe-cCCcEEEEecCCcccc
Q 042772          423 YLH-------CLGIIYRDLKPENILLQ-KDGHVVLTDFDLSFMT  458 (489)
Q Consensus       423 yLH-------~~gIvHrDLKP~NILld-~~g~vKL~DFGlS~~~  458 (489)
                      .++       ...++|+|+.|.||+++ +++.+.|+||+.+...
T Consensus       155 ~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~  198 (239)
T PF01636_consen  155 ELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWG  198 (239)
T ss_dssp             HHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEE
T ss_pred             HHHhhhccCCCcEEEEeccccccceeeeccceeEEEecccceEC
Confidence            333       24599999999999999 6677789999988543

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.12  E-value=3.4e-05  Score=73.60  Aligned_cols=128  Identities=25%  Similarity=0.308  Sum_probs=90.9

Q ss_pred             cCcccccccCCCCc-eEEEEEEEcCCCcEEEEEEeecccccc------------------hHHHHHHHHHHHHHHhCC--
Q 042772          306 HHFKPIKPLGCGDT-GSVHLVELQGAGELYAMKAMEKSVMLN------------------RNKVHRACIEREIMSLLD--  364 (489)
Q Consensus       306 ~~y~~~~~LG~G~f-G~Vy~a~~~~tg~~vAiK~i~~~~~~~------------------~~~~~~~~~E~~il~~l~--  364 (489)
                      .+++.++.||.|.- |.||+++..  |+.||+|+........                  ......|..|-....+|+  
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~--g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~  114 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEID--GRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEA  114 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEEC--CeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhc
Confidence            57999999999999 999999987  6799999932211111                  023445777888777664  


Q ss_pred             -CCCc--ceeeEEEEeC------------------CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 042772          365 -HPFL--PTLYASFQTS------------------THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY  423 (489)
Q Consensus       365 -HpnI--v~l~~~~~~~------------------~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~y  423 (489)
                       +.++  ++++|+..-.                  ....||.||++...           .++..    -+.+|.+-|..
T Consensus       115 ~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------~~~~~----~~~~~~~dl~~  179 (207)
T PF13095_consen  115 GREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------PLQIR----DIPQMLRDLKI  179 (207)
T ss_pred             cccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------ccchh----HHHHHHHHHHH
Confidence             4456  8888887311                  12467888776533           12222    34567788899


Q ss_pred             HHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       424 LH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      +|+.||+-+|+++.|..     .=||+|||.+
T Consensus       180 ~~k~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  180 LHKLGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             HHHCCeeeccCcccccc-----CCEEEecccC
Confidence            99999999999999975     3589999875

>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]

Probab=98.06  E-value=5.7e-05  Score=65.99  Aligned_cols=116  Identities=26%  Similarity=0.339  Sum_probs=88.5

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      +..+++....++++.|.   ++.|+++|+++.+++||+..+.++++...+.....                         
T Consensus       114 ~~~~~~~~~~~~~~~d~---~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------------------  165 (232)
T COG2202         114 LRALLEASPDGIWVLDE---DGRILYANPAAEELLGYSPEEELGRGLSDLIHPED-------------------------  165 (232)
T ss_pred             HHHHHhhCCceEEEEeC---CCCEEEeCHHHHHHhCCChHHhcCCChhheEecCC-------------------------
Confidence            78899999999999999   99999999999999999999888888655543320                         


Q ss_pred             cccccccccCcccccCCCH-HHHHHHHHHHHcCCcEEEEEEeeecCCCe-eeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          149 NYGVYNFTLGCCLEISSDQ-ATVSKIRDAVREQREITVQLINYTKSGKK-FWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~g~~-~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                                      .+. ..................+.....++|.. .|....+.+..+ .|.+..+.....|+++.
T Consensus       166 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~  228 (232)
T COG2202         166 ----------------EERRELELARALAEGRGGPLEIEYRVRRKDGERVRWILSRISPVRD-DGEIVGVVGIARDITER  228 (232)
T ss_pred             ----------------CchhhHHHHHHhhccCCCCcceEEEEEecCCCEEEEEEeeeeEecC-CCceEEEEEEEechHHH
Confidence                            111 01111222223334577888889999996 999888888776 78999999999999987


Q ss_pred             ccc
Q 042772          227 VEP  229 (489)
Q Consensus       227 ke~  229 (489)
                      ++.
T Consensus       229 ~~~  231 (232)
T COG2202         229 KQA  231 (232)
T ss_pred             hhc
Confidence            753

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.03  E-value=6.9e-05  Score=73.12  Aligned_cols=137  Identities=16%  Similarity=0.039  Sum_probs=82.7

Q ss_pred             ccCCCCc-eEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEEEecCCC
Q 042772          313 PLGCGDT-GSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLITDFCPG  390 (489)
Q Consensus       313 ~LG~G~f-G~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lVmEy~~g  390 (489)
                      .|..|.. ..||++...  +..+.+|......      ...+..|.++++.+. +--+++++.+....+..++|||+++|
T Consensus         5 ~~~~g~~~~~v~~~~~~--~~~~~vk~~~~~~------~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G   76 (244)
T cd05150           5 RVTEGQSGATVYRLDGK--NPGLYLKIAPSGP------TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPG   76 (244)
T ss_pred             ecCCCCCcCeEEEEcCC--CCcEEEEecCCCc------ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCC
Confidence            3444555 789998754  3577888765431      234556888888773 44567788777666678999999998


Q ss_pred             CCHHHHH-------------------hhCC--CCCCCHH---HHHHHHH-------------------HHHHHHHHHH--
Q 042772          391 GELFALL-------------------DKQP--MKIFRED---SARFYAA-------------------EVVIGLEYLH--  425 (489)
Q Consensus       391 gsL~~~L-------------------~~~~--~~~l~e~---~~~~i~~-------------------qI~~aL~yLH--  425 (489)
                      .+|....                   +..+  ..++...   .......                   .+...+..|-  
T Consensus        77 ~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  156 (244)
T cd05150          77 VPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEAT  156 (244)
T ss_pred             ccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhh
Confidence            7776432                   1111  0011100   0000000                   0111112221  


Q ss_pred             -----HCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          426 -----CLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       426 -----~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                           ...++|+|+.|.|||++.++.+.|+||+.+..
T Consensus       157 ~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~  193 (244)
T cd05150         157 RPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGV  193 (244)
T ss_pred             CCCcCceEEECCCCCCccEEEeCCcEEEEEEcccccc
Confidence                 23489999999999999887788999998853

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PRK11006 phoR phosphate regulon sensor protein; Provisional

Probab=98.02  E-value=1.3e-05  Score=84.77  Aligned_cols=51  Identities=18%  Similarity=0.168  Sum_probs=46.0

Q ss_pred             hhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCcccc
Q 042772           65 QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFL  118 (489)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l  118 (489)
                      ....+.++++.+++++++.|+   +|.|+++|++|++++||+.+|++|+++..+
T Consensus        96 ~~~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~  146 (430)
T PRK11006         96 LIKRFRSGAESLPDAVVLTTE---EGNIFWCNGLAQQLLGFRWPEDNGQNILNL  146 (430)
T ss_pred             HHHHHHHHHHhCCCeEEEEcC---CCceeHHHHHHHHHhCCCChHhCCCcHHHH
Confidence            345678899999999999999   999999999999999999999999987544

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]

Probab=98.00  E-value=2.7e-05  Score=78.62  Aligned_cols=120  Identities=17%  Similarity=0.274  Sum_probs=95.9

Q ss_pred             HHHhhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCcc-ccccccchhhhhhccccccchhHH
Q 042772           62 DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCS-FLELTEYTREEILGRNCSTYTFML  140 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~  140 (489)
                      .+.+.+.|..+|-...++++-||.   .|.|+.+|+..+++.|.+.|+++|++.- .|...+                  
T Consensus       106 ~e~Er~kL~SvlayMtDGViATdR---rG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~i~d------------------  164 (459)
T COG5002         106 TEQERRKLDSVLAYMTDGVIATDR---RGKIILINKPALKMLGVSKEDALGRSILELLKIED------------------  164 (459)
T ss_pred             HHHHHHHHHHHHHHHcCceEeecC---CCcEEEeccHHHHHhCcCHHHHhcccHHHHhCCcc------------------
Confidence            444667799999999999999999   9999999999999999999999999954 444332                  


Q ss_pred             HHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeee
Q 042772          141 YFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQ  220 (489)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~  220 (489)
                                                .-   .+++.+......+...   +..|+.+-..+..+-++-+.|-+.++|+|.
T Consensus       165 --------------------------~y---~~~dL~e~~~s~lld~---~~~~E~~~lrv~Fs~i~rEsGfisGlIaVl  212 (459)
T COG5002         165 --------------------------TY---TFEDLVEKNDSLLLDS---SDEEEGYVLRVNFSVIQRESGFISGLIAVL  212 (459)
T ss_pred             --------------------------ce---eHHHHHhcCCcEEEee---cCCCccEEEEEEEEEEeecccccceeEEEE
Confidence                                      11   1344454555555543   348888999999999999999999999999


Q ss_pred             ccCCcccccccccc
Q 042772          221 LDGSDHVEPLRNRL  234 (489)
Q Consensus       221 ~d~Te~ke~e~~~l  234 (489)
                      .|+||+.+.++++.
T Consensus       213 hDvTEqek~e~ErR  226 (459)
T COG5002         213 HDVTEQEKVERERR  226 (459)
T ss_pred             ecccHHHHHHHHHH
Confidence            99999887666554

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=97.97  E-value=2e-05  Score=85.98  Aligned_cols=105  Identities=11%  Similarity=0.091  Sum_probs=76.4

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHh
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      ..+..+|+.++++|+++|.   +|.|+++|+++++++|++.++++|+++.-+-...                        
T Consensus        80 ~~L~aIL~sm~eGVi~vD~---~G~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~------------------------  132 (520)
T PRK10820         80 RALSALLEALPEPVLSIDM---KGKVELANPASCQLFGQSEEKLRNHTAAQLINGF------------------------  132 (520)
T ss_pred             HHHHHHHHhCCCcEEEECC---CCeeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc------------------------
Confidence            3478999999999999999   9999999999999999999999999987543221                        


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccc--cCCCCe--eEEeeeecc
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMR--DHKGEL--QYFIGVQLD  222 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~--~~~g~~--~~~~~~~~d  222 (489)
                                           .    +.+.+..++.. ........+|..|+  +.+.|+.  |++|..  .++|.+.+|
T Consensus       133 ---------------------~----l~~~le~~~~~-~~~~~v~~~g~~~~--v~~~PI~~~d~~g~~~~~GaVivlrd  184 (520)
T PRK10820        133 ---------------------N----FLRWLESEPQD-SHNEHVVINGQDFL--MEITPVYLQDENDQHVLVGAVVMLRS  184 (520)
T ss_pred             ---------------------h----HHHHHHcCCCc-cceEEEEECCEEEE--EEEEeeeecCCCCceeEEEEEEEecc
Confidence                                 1    12223333321 01122355688776  5568887  767664  789999999


Q ss_pred             CCcc
Q 042772          223 GSDH  226 (489)
Q Consensus       223 ~Te~  226 (489)
                      +++.
T Consensus       185 ~~~l  188 (520)
T PRK10820        185 TARM  188 (520)
T ss_pred             HHHH
Confidence            9874

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.95  E-value=0.00038  Score=66.50  Aligned_cols=137  Identities=18%  Similarity=0.204  Sum_probs=93.2

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-------------chHHHHHHHHHHHHHHhCC------CCCccee
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-------------NRNKVHRACIEREIMSLLD------HPFLPTL  371 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-------------~~~~~~~~~~E~~il~~l~------HpnIv~l  371 (489)
                      ...||+|+.-.||.-   .......||++.+....             .........+|+.-...+.      +.+|.++
T Consensus         6 ~~~i~~G~~R~cy~H---P~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    6 SDLIAQGGERDCYQH---PDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CcccccCCCceEEEC---CCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            467999999988863   33445678988765410             0112344455555444433      8899999


Q ss_pred             eEEEEeCCeEEEEEecCC------CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC
Q 042772          372 YASFQTSTHICLITDFCP------GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       372 ~~~~~~~~~~~lVmEy~~------ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g  445 (489)
                      +|+.++..-+.+|+|.+.      ..+|.+++...   .+++ ..   ...+-.-..||-+.+|+.+||+|.||++....
T Consensus        83 ~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~---~~~~-~~---~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~  155 (199)
T PF10707_consen   83 YGFVETNLGLGLVVELIRDADGNISPTLEDYLKEG---GLTE-EL---RQALDEFKRYLLDHHIVIRDLNPHNIVVQRRD  155 (199)
T ss_pred             eEEEecCCceEEEEEEEECCCCCcCccHHHHHHcC---CccH-HH---HHHHHHHHHHHHHcCCeecCCCcccEEEEecC
Confidence            999999988999999763      24688888653   2444 22   22334456688899999999999999996432


Q ss_pred             ----cEEEEe-cCCccc
Q 042772          446 ----HVVLTD-FDLSFM  457 (489)
Q Consensus       446 ----~vKL~D-FGlS~~  457 (489)
                          .+.|+| ||....
T Consensus       156 ~~~~~lvlIDG~G~~~~  172 (199)
T PF10707_consen  156 SGEFRLVLIDGLGEKEL  172 (199)
T ss_pred             CCceEEEEEeCCCCccc
Confidence                588888 666544

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PLN02876 acyl-CoA dehydrogenase

Probab=97.93  E-value=9.4e-05  Score=85.11  Aligned_cols=80  Identities=19%  Similarity=0.394  Sum_probs=56.4

Q ss_pred             ccccCCCCceEEEEEEEcCCC--cEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCc--ceeeEEEEeC---CeEE
Q 042772          311 IKPLGCGDTGSVHLVELQGAG--ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFL--PTLYASFQTS---THIC  382 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg--~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnI--v~l~~~~~~~---~~~~  382 (489)
                      ++.++.|.+..+|+......+  ..+++|........  .....+.+|..+++.+. |+++  ++++.++.+.   +..|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~--~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~f  120 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLL--QSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAF  120 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccC--ccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCce
Confidence            577899999999998876432  46777766443211  12245678999999985 6665  7777777654   4679


Q ss_pred             EEEecCCCCC
Q 042772          383 LITDFCPGGE  392 (489)
Q Consensus       383 lVmEy~~ggs  392 (489)
                      +||||++|..
T Consensus       121 lVME~v~G~~  130 (822)
T PLN02876        121 YIMEYLEGRI  130 (822)
T ss_pred             EEEEecCCcc
Confidence            9999998754

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.87  E-value=1.9e-05  Score=79.46  Aligned_cols=92  Identities=21%  Similarity=0.378  Sum_probs=78.1

Q ss_pred             HHhCCCCCcceeeEEEEeCC-----eEEEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHC--CCe
Q 042772          360 MSLLDHPFLPTLYASFQTST-----HICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCL--GII  430 (489)
Q Consensus       360 l~~l~HpnIv~l~~~~~~~~-----~~~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~--gIv  430 (489)
                      |-++.|.||++++.+|.+..     .+.+++||+..|+|.++|++.  ....+.......|+.||+.||.|||+-  -|+
T Consensus       121 llqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Ppii  200 (458)
T KOG1266|consen  121 LLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPII  200 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccc
Confidence            34457999999999987643     588999999999999999873  234577888899999999999999976  499


Q ss_pred             ecCCCCCCEEEecCCcEEEEe
Q 042772          431 YRDLKPENILLQKDGHVVLTD  451 (489)
Q Consensus       431 HrDLKP~NILld~~g~vKL~D  451 (489)
                      |+++..+-|++..+|.||+.-
T Consensus       201 hgnlTc~tifiq~ngLIkig~  221 (458)
T KOG1266|consen  201 HGNLTCDTIFIQHNGLIKIGS  221 (458)
T ss_pred             cCCcchhheeecCCceEEecc
Confidence            999999999999999988753

>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A

Probab=97.78  E-value=0.0002  Score=61.83  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=75.4

Q ss_pred             CCCEEEecHh-hHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCcccccCCCH
Q 042772           89 DNPIIFASDS-FLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQ  167 (489)
Q Consensus        89 ~~~i~~~n~~-~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (489)
                      |+.|+++... ...++||.++|++|+.+-.|..++                                           |.
T Consensus        11 dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~H~~-------------------------------------------D~   47 (111)
T PF14598_consen   11 DGKITYVDSRAVSSLLGYLPEELVGRSIYDFVHPD-------------------------------------------DL   47 (111)
T ss_dssp             TSBEEEEETTHHHHHHSS-HHHHTTSBGGGGBSCC-------------------------------------------TH
T ss_pred             CcEEEEEcCccChhhcCCCcHHHcCCchHHhCCHh-------------------------------------------hh
Confidence            9999999999 799999999999999988777774                                           44


Q ss_pred             H--HHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCC-CCeeEEeeeeccCCc
Q 042772          168 A--TVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHK-GELQYFIGVQLDGSD  225 (489)
Q Consensus       168 ~--~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~-g~~~~~~~~~~d~Te  225 (489)
                      .  ..+..++.+..++..+.-.....|+|...|+.....++.|.. ++..+++++..=++|
T Consensus        48 ~~~~~~~~~~~~~~g~~~~~~yR~~~k~g~~vwvqt~~~~~~n~~~~~~~~Iv~~n~vlse  108 (111)
T PF14598_consen   48 QRVLKQHHREVLQKGQSVSPYYRFRTKNGGYVWVQTKATLFYNPWTSKPEFIVCTNTVLSE  108 (111)
T ss_dssp             HHHHHHHHHHHHHHSSEEEEEEEEE-TTSSEEEEEEEEEEEEETTTTCEEEEEEEEEEESC
T ss_pred             hhHHHHHHHHHhhCCCcCcceEEEEecCCcEEEEEEEEEEEECCCCCCccEEEEEEEEecc
Confidence            4  334688888899988888888999999999999999999755 566777777655554

...

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.75  E-value=0.0003  Score=65.60  Aligned_cols=134  Identities=23%  Similarity=0.216  Sum_probs=94.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCc-ceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL-PTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~~~~~~~~~~~lV  384 (489)
                      ...+..+.|+.|++|.||+|.+.  |..+|+|+-...     .....+..|.++|..+.--++ +.+|.+-.    .++.
T Consensus        22 ~~~~v~~~L~KG~~s~Vyl~~~~--~~~~a~Kvrr~d-----s~r~~l~kEakiLeil~g~~~~p~vy~yg~----~~i~   90 (201)
T COG2112          22 YELRVEKELAKGTTSVVYLGEWR--GGEVALKVRRRD-----SPRRNLEKEAKILEILAGEGVTPEVYFYGE----DFIR   90 (201)
T ss_pred             hhhhhhhhhhcccccEEEEeecc--CceEEEEEecCC-----cchhhHHHHHHHHHHhhhcCCCceEEEech----hhhh
Confidence            34667789999999999999988  558899976433     334567779999999876555 34544322    3455


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCC-CCCEEEecCCcEEEEecCCccccC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLK-PENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLK-P~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      |||+.|-+|.+.-...     +..++    ..++.+-.-|-..||-|..|. |...+|-.++.+.|+||.-|++..
T Consensus        91 me~i~G~~L~~~~~~~-----~rk~l----~~vlE~a~~LD~~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~k~  157 (201)
T COG2112          91 MEYIDGRPLGKLEIGG-----DRKHL----LRVLEKAYKLDRLGIEHGELSRPWKNVLVNDRDVYIIDFDSATFKK  157 (201)
T ss_pred             hhhhcCcchhhhhhcc-----cHHHH----HHHHHHHHHHHHhccchhhhcCCceeEEecCCcEEEEEccchhhcc
Confidence            9999888887765431     22333    235555455667899998885 566666666699999999997443

>PRK11086 sensory histidine kinase DcuS; Provisional

Probab=97.64  E-value=0.00019  Score=77.69  Aligned_cols=108  Identities=18%  Similarity=0.272  Sum_probs=75.8

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCCh---hhhcCCCccccccccchhhhhhccccccchhHHHHHH
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTR---EEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLA  144 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~---~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (489)
                      .+..+++.+.++++++|.   ++.|+++|+++++++|++.   ++.+|+.+..+...                       
T Consensus       222 ~~~~il~~~~~gIi~~D~---~g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~~~~~-----------------------  275 (542)
T PRK11086        222 QRQAMLQSIKEGVIAVDD---RGEVTLINDEAKRLFNYKKGLEDDPLGTDVESWMPV-----------------------  275 (542)
T ss_pred             HHHHHHHHhcCcEEEECC---CCeEEEEhHHHHHHhCCCcCCcccccCCcHHHhCCc-----------------------
Confidence            356889999999999999   9999999999999998763   45566554322211                       


Q ss_pred             HhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          145 LWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                                ..+...+..+++...+..  +.+|..+  .....|+.+ +|++.+++.+.+|+|
T Consensus       276 --------------------------~~~~~~~~~~~~~~~~~~--~~~g~~~--~~~~~pi~~-~g~~~g~v~~~rDit  324 (542)
T PRK11086        276 --------------------------SRLKEVLRTGTPRRDEEI--NINGRLL--LTNTVPVRV-NGEIIGAIATFRDKT  324 (542)
T ss_pred             --------------------------hhHHHHHhcCCCccceEE--EECCEEE--EEEEEEEeE-CCEEEEEEEEEEEch
Confidence                                      123444555554433222  3356544  456789998 899999999999999


Q ss_pred             cccccccc
Q 042772          225 DHVEPLRN  232 (489)
Q Consensus       225 e~ke~e~~  232 (489)
                      +.++.+++
T Consensus       325 e~~~l~~~  332 (542)
T PRK11086        325 EVRQLAQR  332 (542)
T ss_pred             HHHHHHHH
Confidence            97765443

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.59  E-value=0.00048  Score=66.97  Aligned_cols=74  Identities=11%  Similarity=0.114  Sum_probs=44.8

Q ss_pred             ccccCCCCce-EEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCC---CcceeeEEEEeC---CeEEE
Q 042772          311 IKPLGCGDTG-SVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP---FLPTLYASFQTS---THICL  383 (489)
Q Consensus       311 ~~~LG~G~fG-~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp---nIv~l~~~~~~~---~~~~l  383 (489)
                      ++.|+.|+.. .||+..     ..+++|.....     .....+..|.+++..+...   -++.+++.....   ...++
T Consensus         2 ~~~~~~gG~~n~vy~~~-----~~~VlR~~~~~-----~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~   71 (235)
T cd05155           2 IEPVDSGGTDNATFRLG-----DDMSVRLPSAA-----GYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWS   71 (235)
T ss_pred             ceeccCCCcccceEEcC-----CceEEEcCCcc-----chHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceE
Confidence            4567766665 588752     34677865432     1234677899998877521   344555433322   23588


Q ss_pred             EEecCCCCCHH
Q 042772          384 ITDFCPGGELF  394 (489)
Q Consensus       384 VmEy~~ggsL~  394 (489)
                      +|++++|.++.
T Consensus        72 l~~~i~G~~l~   82 (235)
T cd05155          72 VYRWLEGETAT   82 (235)
T ss_pred             EEEeecCCCCC
Confidence            99999886653

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.58  E-value=0.00063  Score=65.80  Aligned_cols=75  Identities=28%  Similarity=0.365  Sum_probs=47.6

Q ss_pred             ccccCCCCceEEEEEEEcC-CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEEEecC
Q 042772          311 IKPLGCGDTGSVHLVELQG-AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLITDFC  388 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~-tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lVmEy~  388 (489)
                      ++.|..|-...+|++.... .++.|++|.......    ..-....|..+++.+. +...++++..+. .   .++|||+
T Consensus         3 i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~----~~~d~~~E~~~~~~l~~~gl~P~v~~~~~-~---~~l~e~i   74 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTE----LIIDRERELRIHKLLSKHGLAPKLYATFQ-N---GLIYEFI   74 (235)
T ss_pred             EEEcCCcccceEEEEEcCCCCCCeEEEEEccCCcc----ceecHHHHHHHHHHHHhCCCCCeEEEEeC-C---cEEEEee
Confidence            4567788889999987553 356788997654311    1112235888888774 333455554432 1   4799999


Q ss_pred             CCCCH
Q 042772          389 PGGEL  393 (489)
Q Consensus       389 ~ggsL  393 (489)
                      +|.++
T Consensus        75 ~G~~l   79 (235)
T cd05157          75 PGRTL   79 (235)
T ss_pred             CCCcC
Confidence            88665

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=97.54  E-value=0.00048  Score=77.11  Aligned_cols=106  Identities=15%  Similarity=0.233  Sum_probs=76.9

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      .+...++.+.++|++.|+   +|.|+++|+++++++|++.++++|+++..+...                          
T Consensus       204 ~~~~il~~~~~gVl~vD~---~G~I~~~N~aa~~llg~s~~~l~G~~i~~l~~~--------------------------  254 (638)
T PRK11388        204 QLNALLESMDDGVIAWDE---QGNLQFLNAQAARLLRLDATASQGRAITELLTL--------------------------  254 (638)
T ss_pred             HHHHHHhccCCcEEEECC---CCeEehhhHHHHHHhCcCHHHHCCCcHHHHhcc--------------------------
Confidence            345688999999999999   999999999999999999999999987544311                          


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                                        .    ..+.+.+..++.+...-.....+|..+|+.+++.|+.+..|..  ++.+..|++..
T Consensus       255 ------------------~----~~l~~vl~~~~~~~~~~~~l~~~g~~~~~~v~~~Pi~~~~g~~--~v~~l~~~~~~  309 (638)
T PRK11388        255 ------------------P----AVLQQAIKQAHPLKHVEVTFESQGQFIDAVITLKPIIEGQGTS--FILLLHPVEQM  309 (638)
T ss_pred             ------------------c----hHHHHHHhcCCceeeEEEEEecCCceEEEEEEEEeecccCceE--EEEEehhhHHH
Confidence                              0    1234455556655443344455788889999999997655542  55555676653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	489
2v1a_A	144	N- And C-Terminal Helices Of Oat Lov2 (404-546) Are		4e-50
2v0u_A	146	N- And C-terminal Helices Of Oat Lov2 (404-546) Are		4e-50
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-50
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-49
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-49
4eep_A	115	Crystal Structure Of Lov2 Domain Of Arabidopsis Tha		2e-45
4eer_A	115	Crystal Structure Of Lov2 Domain Of Arabidopsis Tha		1e-44
4ees_A	115	Crystal Structure Of Ilov Length = 115		8e-43
4eeu_A	118	Crystal Structure Of Philov2.1 Length = 118		4e-39
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		6e-34
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		8e-33
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		6e-32
3g51_A	325	Structural Diversity Of The Active Conformation Of		6e-32
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		6e-32
1g28_A	104	Structure Of A Flavin-Binding Domain, Lov2, From Th		7e-32
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		5e-31
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		1e-30
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		2e-30
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		2e-30
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		2e-30
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		2e-30
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		2e-30
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		2e-30
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		2e-30
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		3e-30
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		3e-30
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		3e-30
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		9e-30
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		4e-28
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		5e-28
4ae6_A	343	Structure And Function Of The Human Sperm-specific		5e-28
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		5e-28
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		5e-28
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		5e-28
4ae9_A	343	Structure And Function Of The Human Sperm-specific		5e-28
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		6e-28
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		6e-28
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		7e-28
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		7e-28
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		7e-28
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		7e-28
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		7e-28
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		8e-28
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		8e-28
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		8e-28
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		8e-28
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		9e-28
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		9e-28
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		1e-27
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		1e-27
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		1e-27
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		1e-27
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		1e-27
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		1e-27
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		1e-27
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		2e-27
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		3e-27
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		3e-27
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		3e-27
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		3e-27
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		3e-27
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		3e-27
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		3e-27
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		3e-27
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		3e-27
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		3e-27
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		3e-27
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		3e-27
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		4e-27
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		4e-27
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		4e-27
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		4e-27
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		4e-27
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		5e-27
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		5e-27
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		5e-27
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		5e-27
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		6e-27
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		6e-27
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		6e-27
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		1e-26
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		1e-26
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-26
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-26
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		5e-26
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		6e-26
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		6e-26
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		4e-25
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		4e-25
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		5e-25
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		5e-25
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		6e-25
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		6e-25
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		6e-25
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		6e-25
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		6e-25
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		6e-25
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		6e-25
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		6e-25
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		7e-25
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		7e-25
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		7e-25
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		7e-25
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		7e-25
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		8e-25
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		9e-25
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		2e-24
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-24
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		5e-24
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		1e-23
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		1e-23
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		1e-23
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		1e-23
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		2e-23
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-23
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		3e-23
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		6e-23
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		9e-23
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		1e-22
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		1e-21
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		1e-21
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		2e-21
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		3e-21
3ulf_A	170	The Light State Structure Of The Blue-light Photore		4e-20
3ue6_A	166	The Dark Structure Of The Blue-light Photoreceptor		4e-20
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		7e-20
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		7e-20
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		8e-20
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		8e-20
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		3e-19
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-19
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-19
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		3e-19
2z6d_A	130	Crystal Structure Of Lov1 Domain Of Phototropin2 Fr		7e-18
3t50_A	128	X-Ray Structure Of The Lov Domain From The Lov-Hk S		4e-17
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		4e-17
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		5e-17
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		5e-17
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		6e-17
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		1e-16
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		2e-16
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-16
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		2e-16
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		2e-16
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-16
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		2e-16
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		2e-16
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		3e-16
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		4e-16
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		5e-16
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		5e-16
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		5e-16
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		5e-16
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		5e-16
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		5e-16
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		6e-16
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		6e-16
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-16
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-16
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		6e-16
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		6e-16
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		7e-16
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		7e-16
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		7e-16
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		7e-16
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		7e-16
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		8e-16
1n9l_A	109	Crystal Structure Of The Phot-lov1 Domain From Chla		9e-16
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		1e-15
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		1e-15
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		2e-15
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		3e-15
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		3e-15
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		5e-15
2pr5_A	132	Structural Basis For Light-dependent Signaling In T		6e-15
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		2e-14
2z6c_A	129	Crystal Structure Of Lov1 Domain Of Phototropin1 Fr		2e-14
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		2e-14
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		2e-14
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		2e-14
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		2e-14
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		3e-14
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		3e-14
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		5e-14
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		5e-14
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-14
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		6e-14
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-14
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		7e-14
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		7e-14
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		7e-14
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		1e-13
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-13
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		1e-13
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		1e-13
3rh8_B	148	Crystal Structure Of The Light-State Dimer Of Funga		2e-13
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-13
3hjk_A	154	2.0 Angstrom Structure Of The Ile74val Variant Of V		2e-13
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-13
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		2e-13
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		2e-13
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		2e-13
3p7n_A	258	Crystal Structure Of Light Activated Transcription		2e-13
3hji_A	154	1.8 Angstrom Crystal Structure Of The I74v:i85v Var		2e-13
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-13
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		2e-13
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		2e-13
3is2_B	154	2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic		3e-13
3d72_A	149	1.65 Angstrom Crystal Structure Of The Cys71val Var		3e-13
3is2_A	154	2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic		3e-13
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		3e-13
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		3e-13
2pd7_A	149	2.0 Angstrom Crystal Structure Of The Fungal Blue-L		3e-13
2pd8_A	149	1.8 Angstrom Crystal Structure Of The Cys71ser Muta		3e-13
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		3e-13
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		3e-13
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		4e-13
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		5e-13
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		7e-13
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		7e-13
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		8e-13
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		8e-13
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		9e-13
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-12
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		1e-12
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		1e-12
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		1e-12
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		1e-12
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		1e-12
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		1e-12
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		1e-12
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		1e-12
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		1e-12
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		1e-12
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		2e-12
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		2e-12
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		2e-12
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		2e-12
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		2e-12
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		2e-12
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		2e-12
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		2e-12
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		2e-12
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		2e-12
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		2e-12
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		2e-12
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		2e-12
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		3e-12
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		3e-12
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		3e-12
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		3e-12
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		4e-12
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		6e-12
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		1e-11
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		1e-11
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		2e-11
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		2e-11
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		2e-11
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		2e-11
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		3e-11
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		3e-11
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		3e-11
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		3e-11
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		3e-11
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		3e-11
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		3e-11
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		4e-11
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		4e-11
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		4e-11
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		4e-11
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		4e-11
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		4e-11
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		4e-11
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		4e-11
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		4e-11
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		4e-11
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		4e-11
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		4e-11
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		4e-11
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		5e-11
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		5e-11
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		8e-11
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		1e-10
4fie_A	423	Full-Length Human Pak4 Length = 423		2e-10
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		2e-10
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		2e-10
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		3e-10
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		3e-10
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		3e-10
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		3e-10
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		3e-10
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		4e-10
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		4e-10
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		4e-10
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		4e-10
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		5e-10
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		5e-10
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		6e-10
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		8e-10
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-09
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		1e-09
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		1e-09
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-09
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-09
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		2e-09
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-09
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		2e-09
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-09
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		2e-09
4dn5_A	356	Crystal Structure Of Nf-kb-inducing Kinase (nik) Le		2e-09
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		2e-09
4g3d_A	371	Crystal Structure Of Human Nf-kappab Inducing Kinas		2e-09
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		2e-09
4eut_A	396	Structure Of Bx-795 Complexed With Unphosphorylated		2e-09
4euu_A	319	Structure Of Bx-795 Complexed With Human Tbk1 Kinas		3e-09
3soa_A	444	Full-Length Human Camkii Length = 444		4e-09
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		4e-09
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-09
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		5e-09
3a7f_A	303	Human Mst3 Kinase Length = 303		5e-09
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-09
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		5e-09
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		5e-09
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		5e-09
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		6e-09
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		6e-09
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		6e-09
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		6e-09
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		6e-09
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		6e-09
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		6e-09
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		7e-09
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		1e-08
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		1e-08
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		1e-08
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		1e-08
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		2e-08
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		2e-08
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		2e-08
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		2e-08
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-08
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		3e-08
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		3e-08
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		3e-08
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		3e-08
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		4e-08
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		4e-08
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		4e-08
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		4e-08
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		4e-08
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		4e-08
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		5e-08
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		5e-08
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		5e-08
3kk9_A	282	Camkii Substrate Complex B Length = 282		5e-08
3kk8_A	284	Camkii Substrate Complex A Length = 284		5e-08
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		6e-08
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		6e-08
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		6e-08
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		7e-08
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		7e-08
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		8e-08
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		8e-08
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		8e-08
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		9e-08
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		9e-08
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		9e-08
4g3g_A	350	Crystal Structure Of Murine Nf-kappab Inducing Kina		1e-07
3sw1_A	162	Structure Of A Full-Length Bacterial Lov Protein Le		1e-07
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		1e-07
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-07
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		1e-07
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		1e-07
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		1e-07
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-07
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-07
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		1e-07
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		1e-07
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		1e-07
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		1e-07
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		1e-07
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		1e-07
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		2e-07
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		2e-07
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-07
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-07
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		2e-07
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		2e-07
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		2e-07
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		2e-07
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		2e-07
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		2e-07
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		2e-07
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		2e-07
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		2e-07
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		2e-07
4g3f_A	336	Crystal Structure Of Murine Nf-kappab Inducing Kina		2e-07
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-07
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-07
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		2e-07
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		2e-07
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		2e-07
4g3c_A	352	Crystal Structure Of Apo Murine Nf-kappab Inducing		2e-07
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-07
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		2e-07
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		2e-07
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-07
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		2e-07
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		2e-07
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		3e-07
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		3e-07
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-07
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		3e-07
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		3e-07
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		3e-07
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		3e-07
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		3e-07
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		3e-07
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		4e-07
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		4e-07
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-07
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		4e-07
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-07
4hia_A	176	Crystal Structure Of Rhodobacter Sphaeroides Lov Pr		4e-07
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		4e-07
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		4e-07
4hj3_A	176	Crystal Structure Of Rhodobacter Sphaeroides Lov Pr		5e-07
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		5e-07
4hj6_A	178	Crystal Structure Of Rhodobacter Sphaeroides Lov Pr		5e-07
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		5e-07
4hj4_A	177	Crystal Structure Of Rhodobacter Sphaeroides Lov Pr		6e-07
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		7e-07
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		7e-07
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		7e-07
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		7e-07
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		7e-07
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		8e-07
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		8e-07
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		8e-07
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		8e-07
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		8e-07
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		8e-07
2buj_A	317	Crystal Structure Of The Human Serine-Threonine Kin		8e-07
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		8e-07
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		8e-07
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		8e-07
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		9e-07
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		9e-07
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		9e-07
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-06
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		1e-06
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-06
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		1e-06
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		1e-06
2z2w_A	285	Humand Wee1 Kinase Complexed With Inhibitor Pf03357		1e-06
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		1e-06
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		1e-06
2in6_A	287	Wee1 Kinase Complex With Inhibitor Pd311839 Length		1e-06
3bi6_A	287	Wee1 Kinase Complex With Inhibitor Pd352396 Length		1e-06
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		1e-06
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		2e-06
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		2e-06
1x8b_A	289	Structure Of Human Wee1a Kinase: Kinase Domain Comp		2e-06
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		2e-06
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		2e-06
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		2e-06
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		2e-06
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-06
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-06
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-06
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		2e-06
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		2e-06
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		2e-06
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-06
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		2e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		2e-06
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-06
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		3e-06
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		3e-06
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		3e-06
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		3e-06
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		3e-06
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		3e-06
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		3e-06
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-06
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		3e-06
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		3e-06
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		3e-06
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		3e-06
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		3e-06
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		4e-06
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		4e-06
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		4e-06
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		4e-06
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		4e-06
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		4e-06
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		4e-06
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		4e-06
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		4e-06
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		4e-06
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		4e-06
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		4e-06
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		4e-06
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		4e-06
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		4e-06
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		4e-06
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		4e-06
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		4e-06
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		4e-06
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		4e-06
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		5e-06
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		5e-06
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		5e-06
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		5e-06
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		5e-06
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		5e-06
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		5e-06
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		5e-06
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		5e-06
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		5e-06
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		5e-06
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		5e-06
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		5e-06
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		5e-06
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		5e-06
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		6e-06
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		6e-06
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		6e-06
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		6e-06
3kga_A	299	Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexe		6e-06
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		6e-06
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		6e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		6e-06
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		6e-06
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		6e-06
2oza_B	366	Structure Of P38alpha Complex Length = 366		6e-06
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		6e-06
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		6e-06
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		6e-06
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		6e-06
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		7e-06
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		7e-06
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		7e-06
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		7e-06
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		7e-06
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		7e-06
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		7e-06
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		7e-06
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		7e-06
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		7e-06
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		7e-06
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		7e-06
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		7e-06
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		7e-06
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		7e-06
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		7e-06
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		7e-06
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		7e-06
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		7e-06
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		7e-06
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		7e-06
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		7e-06
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		7e-06
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		7e-06
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		7e-06
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		8e-06
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		8e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		8e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		8e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		8e-06
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		8e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		8e-06
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		8e-06
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		8e-06
2oza_A	356	Structure Of P38alpha Complex Length = 356		9e-06
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		9e-06
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		9e-06
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		1e-05
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		1e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-05
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		1e-05
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		1e-05
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		1e-05
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		1e-05
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		1e-05
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		1e-05
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		1e-05
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		1e-05
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		1e-05
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		1e-05
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		1e-05
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-05
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		1e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		1e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		1e-05
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		1e-05
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		1e-05
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		1e-05
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		1e-05
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		1e-05
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		1e-05
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		1e-05
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		1e-05
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		1e-05
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		1e-05
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		1e-05
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		1e-05
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		1e-05
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		1e-05
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		1e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		1e-05
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		1e-05
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		1e-05
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		1e-05
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		1e-05
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		1e-05
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		1e-05
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		1e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-05
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		1e-05
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		1e-05
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		1e-05
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		1e-05
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		1e-05
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		1e-05
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		1e-05
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		1e-05
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		1e-05
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		1e-05
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		1e-05
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		1e-05
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		1e-05
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		1e-05
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-05
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		2e-05
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		2e-05
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		2e-05
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		2e-05
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		2e-05
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		2e-05
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		2e-05
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		2e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		2e-05
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		2e-05
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-05
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		2e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		2e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		2e-05
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		2e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-05
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-05
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-05
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		2e-05
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		2e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-05
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		2e-05
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		2e-05
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		3e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		3e-05
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		3e-05
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		3e-05
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		3e-05
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		3e-05
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		3e-05
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		3e-05
4exu_A	371	Mapk13, Inactive Form Length = 371		3e-05
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		3e-05
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		3e-05
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		4e-05
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		4e-05
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		4e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		4e-05
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		4e-05
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		4e-05
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		4e-05
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		4e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		4e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		4e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		4e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		4e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		4e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		4e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		4e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		5e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		5e-05
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		5e-05
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		5e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		5e-05
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		5e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		5e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		5e-05
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		5e-05
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		5e-05
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		5e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		5e-05
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		6e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		6e-05
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		6e-05
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		6e-05
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		6e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		6e-05
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		7e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		7e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		7e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		7e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-05
3juh_A	335	Crystal Structure Of A Mutant Of Human Protein Kina		8e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		8e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		8e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		8e-05
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		9e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		9e-05
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		9e-05
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		9e-05
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		9e-05
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		9e-05
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		9e-05
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		9e-05
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		9e-05
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		9e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		9e-05
3gni_B	389	Structure Of Strad And Mo25 Length = 389		1e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		1e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		1e-04
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		1e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		1e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		1e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		1e-04
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-04
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-04
2wtk_B	373	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		1e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-04
3u87_A	349	Structure Of A Chimeric Construct Of Human Ck2alpha		1e-04
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-04
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		1e-04
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		1e-04
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		1e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-04
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		1e-04
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		1e-04
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		1e-04
2zjw_A	340	Crystal Structure Of Human Ck2 Alpha Complexed With		1e-04
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		1e-04
1jwh_A	337	Crystal Structure Of Human Protein Kinase Ck2 Holoe		1e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		1e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		1e-04
1pjk_A	334	Crystal Structure Of A C-terminal Deletion Mutant O		1e-04
3bqc_A	335	High Ph-Value Crystal Structure Of Emodin In Comple		1e-04
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		1e-04
3q9w_A	336	Crystal Structure Of Human Ck2 Alpha In Complex Wit		1e-04
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		1e-04
3nga_A	333	Human Ck2 Catalytic Domain In Complex With Cx-4945		1e-04
2r7i_A	335	Crystal Structure Of Catalytic Subunit Of Protein K		1e-04
4dgl_C	335	Crystal Structure Of The Ck2 Tetrameric Holoenzyme		1e-04
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		1e-04
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		1e-04
3h30_A	334	Crystal Structure Of The Catalytic Subunit Of Human		1e-04
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		1e-04
3nsz_A	330	Human Ck2 Catalytic Domain In Complex With Amppn Le		1e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		1e-04
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-04
3mb6_A	331	Human Ck2 Catalytic Domain In Complex With A Difura		1e-04
3q04_A	328	Crystal Structure Of The Apo-Form Of Human Ck2 Alph		1e-04
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		2e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		2e-04
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		2e-04
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		2e-04
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-04
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		2e-04
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-04
3p1a_A	311	Structure Of Human Membrane-Associated Tyrosine- An		2e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		2e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		2e-04
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		2e-04
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-04
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		2e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-04
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-04
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		2e-04
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		2e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		2e-04
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		2e-04
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		2e-04
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		2e-04
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		2e-04
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		3e-04
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		3e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		3e-04
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		3e-04
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		3e-04
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		3e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-04
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		4e-04
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		4e-04
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		4e-04
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		4e-04
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		4e-04
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		4e-04
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		5e-04
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		5e-04
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		6e-04
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		6e-04
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		6e-04
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		6e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		6e-04
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		7e-04
2pzi_A	681	Crystal Structure Of Protein Kinase Pkng From Mycob		7e-04
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		7e-04
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		8e-04
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		8e-04
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		8e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		8e-04
3ofm_A	350	Structure Of A Human Ck2alpha Prime, The Paralog Is		8e-04
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		8e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		9e-04
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		9e-04
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		9e-04

>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are Involved In Light-Induced Signal Transduction (Room Temperature (293k) Dark Structure Of Lov2 (404-546)) Length = 144

Iteration: 1
 Score =  195 bits (496), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 125/192 (65%), Gaps = 49/192 (25%)
Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI 128
           LATTLERIEKNFVITDPR+PDNPIIFASDSFL+LTE                  Y+REEI
Sbjct: 2   LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTE------------------YSREEI 43
Query: 129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLI 188
           LGRNC                     F  G      +D+ATV KIRDA+  Q E+TVQLI
Sbjct: 44  LGRNCR--------------------FLQGP----ETDRATVRKIRDAIDNQTEVTVQLI 79
Query: 189 NYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKA 248
           NYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG++HV        +  E++   ++K 
Sbjct: 80  NYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHV-------RDAAEREGVMLIKK 132
Query: 249 TAENVNEAVREL 260
           TAEN++EA +EL
Sbjct: 133 TAENIDEAAKEL 144

>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are Involved In Light-induced Signal Transduction (cryo Dark Structure Of Lov2 (404-546)) Length = 146

Iteration: 1
 Score =  195 bits (496), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 125/192 (65%), Gaps = 49/192 (25%)
Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI 128
           LATTLERIEKNFVITDPR+PDNPIIFASDSFL+LTE                  Y+REEI
Sbjct: 4   LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTE------------------YSREEI 45
Query: 129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLI 188
           LGRNC                     F  G      +D+ATV KIRDA+  Q E+TVQLI
Sbjct: 46  LGRNCR--------------------FLQGP----ETDRATVRKIRDAIDNQTEVTVQLI 81
Query: 189 NYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKA 248
           NYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG++HV        +  E++   ++K 
Sbjct: 82  NYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHV-------RDAAEREGVMLIKK 134
Query: 249 TAENVNEAVREL 260
           TAEN++EA +EL
Sbjct: 135 TAENIDEAAKEL 146

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  194 bits (494), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 125/192 (65%), Gaps = 49/192 (25%)
Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI 128
           LATTLERIEKNFVITDPR+PDNPIIFASDSFL+LTE                  Y+REEI
Sbjct: 13  LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTE------------------YSREEI 54
Query: 129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLI 188
           LGRNC                     F  G      +D+ATV KIRDA+  Q E+TVQLI
Sbjct: 55  LGRNC--------------------RFLQGP----ETDRATVRKIRDAIDNQTEVTVQLI 90
Query: 189 NYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKA 248
           NYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG++HV        +  E++   ++K 
Sbjct: 91  NYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-------DAAEREGVMLIKK 143
Query: 249 TAENVNEAVREL 260
           TAEN++EA +EL
Sbjct: 144 TAENIDEAAKEL 155

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  191 bits (485), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 124/192 (64%), Gaps = 49/192 (25%)
Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI 128
           LATTLERIEKNFVITDPR+PDNPIIFASDSFL+LTE                  Y+REEI
Sbjct: 13  LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTE------------------YSREEI 54
Query: 129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLI 188
           LGRN                      F  G      +D+ATV KIRDA+  Q E+TVQLI
Sbjct: 55  LGRNA--------------------RFLQGP----ETDRATVRKIRDAIDNQTEVTVQLI 90
Query: 189 NYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKA 248
           NYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG++HV        +  E++   ++K 
Sbjct: 91  NYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-------DAAEREGVMLIKK 143
Query: 249 TAENVNEAVREL 260
           TAEN++EA +EL
Sbjct: 144 TAENIDEAAKEL 155

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  191 bits (485), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 125/192 (65%), Gaps = 49/192 (25%)
Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI 128
           LATTLERIEKNFVITDPR+PDNPIIFASDSFL+LTE                  Y+REEI
Sbjct: 13  LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTE------------------YSREEI 54
Query: 129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLI 188
           LGRN       + FL                     +D+ATV KIRDA+  Q E+TVQLI
Sbjct: 55  LGRN-------MRFLQ-----------------GPETDRATVRKIRDAIDNQTEVTVQLI 90
Query: 189 NYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKA 248
           NYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG++HV        +  E++   ++K 
Sbjct: 91  NYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-------DAAEREGVMLIKK 143
Query: 249 TAENVNEAVREL 260
           TAEN++EA +EL
Sbjct: 144 TAENIDEAAKEL 155

>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana Phototropin 2 Length = 115

Iteration: 1
 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 104/154 (67%), Gaps = 42/154 (27%)
Query: 74  ERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNC 133
           E IEKNFVI+DPR+PDNPIIFASDSFLELTE                  Y+REEILGRNC
Sbjct: 4   EFIEKNFVISDPRLPDNPIIFASDSFLELTE------------------YSREEILGRNC 45
Query: 134 STYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKS 193
                                F  G      +DQATV KIRDA+R+QREITVQLINYTKS
Sbjct: 46  --------------------RFLQGP----ETDQATVQKIRDAIRDQREITVQLINYTKS 81
Query: 194 GKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV 227
           GKKFWNLFHLQPMRD KGELQYFIGVQLDGSDHV
Sbjct: 82  GKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHV 115

>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana Phototropin 2 C426a Mutant Length = 115

Iteration: 1
 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/154 (62%), Positives = 103/154 (66%), Gaps = 42/154 (27%)
Query: 74  ERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNC 133
           E IEKNFVI+DPR+PDNPIIFASDSFLELTE                  Y+REEILGRN 
Sbjct: 4   EFIEKNFVISDPRLPDNPIIFASDSFLELTE------------------YSREEILGRNA 45
Query: 134 STYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKS 193
                                F  G      +DQATV KIRDA+R+QREITVQLINYTKS
Sbjct: 46  --------------------RFLQGP----ETDQATVQKIRDAIRDQREITVQLINYTKS 81
Query: 194 GKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV 227
           GKKFWNLFHLQPMRD KGELQYFIGVQLDGSDHV
Sbjct: 82  GKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHV 115

>pdb|4EES|A Chain A, Crystal Structure Of Ilov Length = 115

Iteration: 1
 Score =  171 bits (433), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 94/154 (61%), Positives = 100/154 (64%), Gaps = 42/154 (27%)
Query: 74  ERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNC 133
           E IEKNFVITDPR+PDNPIIFASD FLELTE                  Y+REEILGRN 
Sbjct: 4   EFIEKNFVITDPRLPDNPIIFASDGFLELTE------------------YSREEILGRNA 45
Query: 134 STYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKS 193
                                F  G      +DQATV KIRDA+R+QRE TVQLINYTKS
Sbjct: 46  --------------------RFLQGP----ETDQATVQKIRDAIRDQRETTVQLINYTKS 81
Query: 194 GKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV 227
           GKKFWNL HLQP+RD KGELQYFIGVQLDGSDHV
Sbjct: 82  GKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115

>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1 Length = 118

Iteration: 1
 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/154 (57%), Positives = 97/154 (62%), Gaps = 42/154 (27%)
Query: 74  ERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNC 133
           E IEK+FVITDPR+PD PIIFASD FLELTE                  Y+REEI+GRN 
Sbjct: 7   EFIEKSFVITDPRLPDYPIIFASDGFLELTE------------------YSREEIMGRNA 48
Query: 134 STYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKS 193
                                F  G      +DQATV KIRDA+R+QRE TVQLINYTKS
Sbjct: 49  --------------------RFLQGP----ETDQATVQKIRDAIRDQRETTVQLINYTKS 84
Query: 194 GKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV 227
           GKKFWNL HLQP+RD KG LQYFIGVQL GSDHV
Sbjct: 85  GKKFWNLLHLQPVRDRKGGLQYFIGVQLVGSDHV 118

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score =  142 bits (357), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLVE---LQGAGELYAMKAMEKSVMLNRNKVHR 352
           +    EK    HF+ +K LG G  G V LV       +G LYAMK ++K+ +  R++V R
Sbjct: 18  VKAGSEKADPSHFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRV-R 76
Query: 353 ACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
             +ER+I++ ++HPF+  L+ +FQT   + LI DF  GG+LF  L K+ M  F E+  +F
Sbjct: 77  TKMERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVM--FTEEDVKF 134
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           Y AE+ +GL++LH LGIIYRDLKPENILL ++GH+ LTDF LS
Sbjct: 135 YLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 177

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score =  138 bits (347), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K  L  F+ ++ LG G  G VHL+  +  G  YAMK ++K +++   +V     ER ++S
Sbjct: 2   KYSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLS 61
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           ++ HPF+  ++ +FQ +  I +I D+  GGELF+LL K   + F    A+FYAAEV + L
Sbjct: 62  IVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLAL 119
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           EYLH   IIYRDLKPENILL K+GH+ +TDF  +
Sbjct: 120 EYLHSKDIIYRDLKPENILLDKNGHIKITDFGFA 153

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score =  135 bits (339), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 110/169 (65%), Gaps = 7/169 (4%)
Query: 291 IAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVE-LQG--AGELYAMKAMEKSVMLN 346
           IAI      G EK     F+ +K LG G  G V LV+ + G  A +LYAMK ++K+ +  
Sbjct: 9   IAITHHVKEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV 68
Query: 347 RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR 406
           R++V R  +ER+I+  ++HPF+  L+ +FQT   + LI DF  GG+LF  L K+ M  F 
Sbjct: 69  RDRV-RTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVM--FT 125
Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E+  +FY AE+ + L++LH LGIIYRDLKPENILL ++GH+ LTDF LS
Sbjct: 126 EEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 174

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score =  135 bits (339), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 110/169 (65%), Gaps = 7/169 (4%)
Query: 291 IAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVE-LQG--AGELYAMKAMEKSVMLN 346
           IAI      G EK     F+ +K LG G  G V LV+ + G  A +LYAMK ++K+ +  
Sbjct: 8   IAITHHVKEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV 67
Query: 347 RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR 406
           R++V R  +ER+I+  ++HPF+  L+ +FQT   + LI DF  GG+LF  L K+ M  F 
Sbjct: 68  RDRV-RTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVM--FT 124
Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E+  +FY AE+ + L++LH LGIIYRDLKPENILL ++GH+ LTDF LS
Sbjct: 125 EEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score =  135 bits (339), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 110/169 (65%), Gaps = 7/169 (4%)
Query: 291 IAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVE-LQG--AGELYAMKAMEKSVMLN 346
           IAI      G EK     F+ +K LG G  G V LV+ + G  A +LYAMK ++K+ +  
Sbjct: 8   IAITHHVKEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV 67
Query: 347 RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR 406
           R++V R  +ER+I+  ++HPF+  L+ +FQT   + LI DF  GG+LF  L K+ M  F 
Sbjct: 68  RDRV-RTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVM--FT 124
Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E+  +FY AE+ + L++LH LGIIYRDLKPENILL ++GH+ LTDF LS
Sbjct: 125 EEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3 Length = 104

Iteration: 1
 Score =  135 bits (339), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 72/143 (50%), Positives = 85/143 (59%), Gaps = 42/143 (29%)
Query: 78  KNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYT 137
           K+FVITDPR+PDNPIIFASD FLELTE                  YTREE+LG NC    
Sbjct: 1   KSFVITDPRLPDNPIIFASDRFLELTE------------------YTREEVLGNNC---- 38
Query: 138 FMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKF 197
                            F  G      +D+  V  IRDAV+EQR++TVQ++NYTK G+ F
Sbjct: 39  ----------------RFLQG----RGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAF 78
Query: 198 WNLFHLQPMRDHKGELQYFIGVQ 220
           WNLFHLQ MRD  G++QYFIGVQ
Sbjct: 79  WNLFHLQVMRDENGDVQYFIGVQ 101

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLV-ELQG--AGELYAMKAMEKSVMLNRNKV-H 351
           +TG  EK+G+ +F+ +K LG G  G V LV ++ G   G+LYAMK ++K+ ++ + K   
Sbjct: 44  LTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTE 103
Query: 352 RACIEREIMS-LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSA 410
               ER+++  +   PFL TL+ +FQT T + LI D+  GGELF  L ++    F E   
Sbjct: 104 HTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRER--FTEHEV 161
Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + Y  E+V+ LE+LH LGIIYRD+K ENILL  +GHVVLTDF LS
Sbjct: 162 QIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 206

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ ++ F  +K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++ 
Sbjct: 4   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 63
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  +FQT   +C + ++  GGELF  L ++  ++F E+ ARFY AE+V  L
Sbjct: 64  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSAL 121
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           EYLH   ++YRD+K EN++L KDGH+ +TDF L
Sbjct: 122 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 154

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 3/156 (1%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           G ++ ++ F+ +K LG G  G V LV+ +  G  YAMK ++K V++ +++V     E  +
Sbjct: 2   GSRVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRV 61
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +    HPFL  L  SFQT   +C + ++  GGELF  L ++  ++F ED ARFY AE+V 
Sbjct: 62  LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVS 119
Query: 420 GLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDL 454
            L+YLH    ++YRDLK EN++L KDGH+ +TDF L
Sbjct: 120 ALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 155

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ ++ F  +K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++ 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  +FQT   +C + ++  GGELF  L ++  ++F E+ ARFY AE+V  L
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSAL 118
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           EYLH   ++YRD+K EN++L KDGH+ +TDF L
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ ++ F  +K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++ 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  +FQT   +C + ++  GGELF  L ++  ++F E+ ARFY AE+V  L
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSAL 118
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           EYLH   ++YRD+K EN++L KDGH+ +TDF L
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ ++ F  +K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++ 
Sbjct: 6   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 65
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  +FQT   +C + ++  GGELF  L ++  ++F E+ ARFY AE+V  L
Sbjct: 66  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSAL 123
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           EYLH   ++YRD+K EN++L KDGH+ +TDF L
Sbjct: 124 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 156

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ ++ F  +K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++ 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  +FQT   +C + ++  GGELF  L ++  ++F E+ ARFY AE+V  L
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSAL 118
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           EYLH   ++YRD+K EN++L KDGH+ +TDF L
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ ++ F  +K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++ 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  +FQT   +C + ++  GGELF  L ++  ++F E+ ARFY AE+V  L
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSAL 118
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           EYLH   ++YRD+K EN++L KDGH+ +TDF L
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ ++ F  +K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++ 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  +FQT   +C + ++  GGELF  L ++  ++F E+ ARFY AE+V  L
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSAL 118
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           EYLH   ++YRD+K EN++L KDGH+ +TDF L
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           G+  ++ ++ F+ +K LG G  G V LV+ +  G  YAMK ++K V++ +++V     E 
Sbjct: 1   GAMARVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTEN 60
Query: 358 EIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
            ++    HPFL  L  SFQT   +C + ++  GGELF  L ++  ++F ED ARFY AE+
Sbjct: 61  RVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEI 118
Query: 418 VIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDL 454
           V  L+YLH    ++YRDLK EN++L KDGH+ +TDF L
Sbjct: 119 VSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 156

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 3/154 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           ++ ++ F+ +K LG G  G V LV+ +  G  YAMK ++K V++ +++V     E  ++ 
Sbjct: 147 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQ 206
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  SFQT   +C + ++  GGELF  L ++  ++F ED ARFY AE+V  L
Sbjct: 207 NSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSAL 264
Query: 422 EYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDL 454
           +YLH    ++YRDLK EN++L KDGH+ +TDF L
Sbjct: 265 DYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 298

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score =  129 bits (324), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 3/154 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           ++ ++ F+ +K LG G  G V LV+ +  G  YAMK ++K V++ +++V     E  ++ 
Sbjct: 144 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQ 203
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  SFQT   +C + ++  GGELF  L ++  ++F ED ARFY AE+V  L
Sbjct: 204 NSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSAL 261
Query: 422 EYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDL 454
           +YLH    ++YRDLK EN++L KDGH+ +TDF L
Sbjct: 262 DYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 295

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score =  128 bits (321), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 3/154 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           ++ ++ F+ +K LG G  G V LV+ +  G  YAMK ++K V++ +++V     E  ++ 
Sbjct: 6   RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQ 65
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  SFQT   +C + ++  GGELF  L ++  ++F ED ARFY AE+V  L
Sbjct: 66  NSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSAL 123
Query: 422 EYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDL 454
           +YLH    ++YRDLK EN++L KDGH+ +TDF L
Sbjct: 124 DYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 157

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 33  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 92
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 93  FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 150
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 151 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 181

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+++ + G++ +TDF L+
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIQVTDFGLA 188

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+++ + G++ +TDF L+
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIKVTDFGLA 188

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 33  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 92
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 93  FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFXEPHARFYAAQIVLTFEYL 150
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 151 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 181

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 61  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 120
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 121 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 178
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 179 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 209

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+++ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 189

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score =  122 bits (305), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFXEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFXEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFXEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+++ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 189

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score =  121 bits (303), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+++ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 189

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score =  121 bits (303), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRR--IGRFXEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+++ + G++ +TDF  +
Sbjct: 159 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 189

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 26  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 85
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 86  FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 143
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 144 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 174

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+++ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIQVTDFGFA 188

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  +AMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+++ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 188

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  +AMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+ +  G  +AMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRR--IGRFXEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+++ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 188

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 33  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 92
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 93  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 150
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 151 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFXEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFXEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 27  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 86
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 87  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFXEPHARFYAAQ 144
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 145 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 183

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFAEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 19  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 78
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 79  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 136
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 137 IVLTFEYLHSLDLIYRDLKPENLLIDEQGYIQVTDFGFA 175

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFXEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ +  F+  K LG G  G V L E +   + +A+KA++K V+L  + V    +E+ ++S
Sbjct: 14  KLKIEDFELHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLS 73
Query: 362 LL-DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
           L  +HPFL  ++ +FQT  ++  + ++  GG+L   +  Q    F    A FYAAE+++G
Sbjct: 74  LAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHI--QSCHKFDLSRATFYAAEIILG 131
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           L++LH  GI+YRDLK +NILL KDGH+ + DF +     CK  +   A  N F
Sbjct: 132 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGM-----CKENMLGDAKTNEF 179

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 61  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 120
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 121 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 178
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 179 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 209

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 61  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 120
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 121 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFXEPHARFYAAQIVLTFEYL 178
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 179 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 209

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 3/166 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
             S  ++G+ +F+ I+ LG G  G V L  ++  G+LYA+K ++K V+L  + V     E
Sbjct: 14  VNSSNRLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTE 73
Query: 357 REIMSLL-DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           + I+SL  +HPFL  L+  FQT   +  + +F  GG+L  +   Q  + F E  ARFYAA
Sbjct: 74  KRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFYAA 131
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK 461
           E++  L +LH  GIIYRDLK +N+LL  +GH  L DF +     C 
Sbjct: 132 EIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICN 177

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK +G G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ + DF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIKVADFGFA 188

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E
Sbjct: 32  TPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNE 91
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           + I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA+
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQ 149
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V+  EYLH L +IYRDLKPEN+++ + G++ +TDF  +
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLIIDQQGYIQVTDFGFA 188

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ I+ LG G  G V LV+ +  G  YAMK ++K  ++   ++     E+ I   ++
Sbjct: 41  LDQFERIRTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIQQAVN 100
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVLEYAPGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 158
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ + DF  +
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIKVADFGFA 189

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK LG G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++  GGE+F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ +  F   K LG G  G V L E +   + +A+KA++K V+L  + V    +E+ ++S
Sbjct: 13  KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLS 72
Query: 362 LL-DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
           L  +HPFL  ++ +FQT  ++  + ++  GG+L   +  Q    F    A FYAAE+++G
Sbjct: 73  LAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHI--QSCHKFDLSRATFYAAEIILG 130
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           L++LH  GI+YRDLK +NILL KDGH+ + DF +     CK  +   A  N F
Sbjct: 131 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGM-----CKENMLGDAKTNXF 178

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 10/168 (5%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDH 365
           HF  +K +G G  G V L   +     YA+K ++K  +L + +      ER ++   + H
Sbjct: 41  HF--LKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKH 98
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           PFL  L+ SFQT+  +  + D+  GGELF  L ++  + F E  ARFYAAE+   L YLH
Sbjct: 99  PFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLH 156
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
            L I+YRDLKPENILL   GH+VLTDF L     CK  + +++  + F
Sbjct: 157 SLNIVYRDLKPENILLDSQGHIVLTDFGL-----CKENIEHNSTTSTF 199

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK +G G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGG++F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ + DF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIKVADFGFA 188

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ IK +G G  G V LV+    G  YAMK ++K  ++   ++     E+ I+  ++
Sbjct: 40  LDQFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            PFL  L  SF+ ++++ ++ ++ PGG++F+ L +  +  F E  ARFYAA++V+  EYL
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRR--IGRFSEPHARFYAAQIVLTFEYL 157
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H L +IYRDLKPEN+L+ + G++ + DF  +
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIKVADFGFA 188

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 16/206 (7%)
Query: 296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI 355
           +    E +   HF+ ++ +G G  G V +V+     ++YAMK M K   + RN+V     
Sbjct: 5   VFDENEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFK 64
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E +IM  L+HPFL  L+ SFQ    + ++ D   GG+L   L +     F+E++ + +  
Sbjct: 65  ELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVH--FKEETVKLFIC 122
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--------------CK 461
           E+V+ L+YL    II+RD+KP+NILL + GHV +TDF+++ M                  
Sbjct: 123 ELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMA 182
Query: 462 PQVFYHAHVNGFYFIMYKWLTGYFTY 487
           P++F      G+ F +  W  G   Y
Sbjct: 183 PEMFSSRKGAGYSFAVDWWSLGVTAY 208

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 98/158 (62%), Gaps = 6/158 (3%)
Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLV-ELQGA--GELYAMKAMEKSVML-NRNKVHRACIE 356
           EKI    F+ ++ LG G  G V  V ++ GA  G+++AMK ++K++++ N         E
Sbjct: 12  EKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAE 71
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           R I+  + HPF+  L  +FQT   + LI ++  GGELF  L+++   IF ED+A FY AE
Sbjct: 72  RNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAE 129
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           + + L +LH  GIIYRDLKPENI+L   GHV LTDF L
Sbjct: 130 ISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGL 167

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 98/158 (62%), Gaps = 6/158 (3%)
Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLV-ELQGA--GELYAMKAMEKSVML-NRNKVHRACIE 356
           EKI    F+ ++ LG G  G V  V ++ GA  G+++AMK ++K++++ N         E
Sbjct: 12  EKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAE 71
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           R I+  + HPF+  L  +FQT   + LI ++  GGELF  L+++   IF ED+A FY AE
Sbjct: 72  RNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAE 129
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           + + L +LH  GIIYRDLKPENI+L   GHV LTDF L
Sbjct: 130 ISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGL 167

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 89/166 (53%), Gaps = 5/166 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 32  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 91
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 92  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 149
Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           GII+RDLKPENILL +D H+ +TDF  + + S + +    A  N F
Sbjct: 150 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK---QARANAF 192

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 89/166 (53%), Gaps = 5/166 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 31  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 90
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 91  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 148
Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           GII+RDLKPENILL +D H+ +TDF  + + S + +    A  N F
Sbjct: 149 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK---QARANSF 191

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 11  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 70
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 71  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 128
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 129 GIIHRDLKPENILLNEDMHIQITDF 153

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 10  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 69
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 70  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 127
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 128 GIIHRDLKPENILLNEDMHIQITDF 152

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 9   FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 68
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 69  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 126
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 127 GIIHRDLKPENILLNEDMHIQITDF 151

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 12  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 71
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 72  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 129
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 130 GIIHRDLKPENILLNEDMHIQITDF 154

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 31  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 90
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 91  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 148
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 149 GIIHRDLKPENILLNEDMHIQITDF 173

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 89/166 (53%), Gaps = 5/166 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 35  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 94
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 95  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 152
Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           GII+RDLKPENILL +D H+ +TDF  + + S + +    A  N F
Sbjct: 153 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK---QARANSF 195

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 16  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 75
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 76  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 133
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 134 GIIHRDLKPENILLNEDMHIQITDF 158

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 93
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 94  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 151
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 152 GIIHRDLKPENILLNEDMHIQITDF 176

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 32  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 91
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 92  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 149
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 150 GIIHRDLKPENILLNEDMHIQITDF 174

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 32  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 91
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 92  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 149
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 150 GIIHRDLKPENILLNEDMHIQITDF 174

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score =  112 bits (279), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 93
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 94  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 151
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 152 GIIHRDLKPENILLNEDMHIQITDF 176

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score =  112 bits (279), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 93
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 94  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 151
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 152 GIIHRDLKPENILLNEDMHIQITDF 176

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 93
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 94  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 151
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 152 GIIHRDLKPENILLNEDMHIQITDF 176

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 35  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 94
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 95  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 152
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 153 GIIHRDLKPENILLNEDMHIQITDF 177

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 95/155 (61%), Gaps = 3/155 (1%)
Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM 360
           +++ L  F  +  LG G  G V L + +G  ELYA+K ++K V++  + V    +E+ ++
Sbjct: 14  DRVKLTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEKRVL 73
Query: 361 SLLDHP-FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +LLD P FL  L++ FQT   +  + ++  GG+L   +  Q +  F+E  A FYAAE+ I
Sbjct: 74  ALLDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHI--QQVGKFKEPQAVFYAAEISI 131
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           GL +LH  GIIYRDLK +N++L  +GH+ + DF +
Sbjct: 132 GLFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGM 166

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score =  111 bits (278), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 93
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 94  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 151
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 152 GIIHRDLKPENILLNEDMHIQITDF 176

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score =  111 bits (278), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 37  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 96
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 97  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 154
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 155 GIIHRDLKPENILLNEDMHIQITDF 179

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 39  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 98
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY  FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 99  FVKLYFCFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 156
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 157 GIIHRDLKPENILLNEDMHIQITDF 181

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +  L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 32  FKFGKILGEGSFSTTVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 91
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 92  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 149
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           GII+RDLKPENILL +D H+ +TDF
Sbjct: 150 GIIHRDLKPENILLNEDMHIQITDF 174

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 88/166 (53%), Gaps = 5/166 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS LDHPF
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 93
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
              LY +FQ    +     +   G L   + K  +  F E   RFY AE+V  LEYLH  
Sbjct: 94  FVKLYFTFQDDEKLYFGLSYAKNGCLLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK 151
Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           GII+RDLKPENILL +D H+ +TDF  + + S + +    A  N F
Sbjct: 152 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK---QARANSF 194

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           ++    ++ +K +G G  G V LV  +   ++YAMK + K  M+ R+       ER+IM+
Sbjct: 65  RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMA 124
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
             + P++  L+ +FQ   ++ ++ ++ PGG+L  L+    +    E  ARFY AEVV+ L
Sbjct: 125 FANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVP---EKWARFYTAEVVLAL 181
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           + +H +G I+RD+KP+N+LL K GH+ L DF
Sbjct: 182 DAIHSMGFIHRDVKPDNMLLDKSGHLKLADF 212

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 20/205 (9%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           G ++    +  +K +G G  G V LV  + + ++YAMK + K  M+ R+       ER+I
Sbjct: 69  GLQMKAEDYDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDI 128
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M+  + P++  L+ +FQ   ++ ++ ++ PGG+L  L+    +    E  A+FY AEVV+
Sbjct: 129 MAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYDVP---EKWAKFYTAEVVL 185
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF------DLSFMTSC----------KPQ 463
            L+ +H +G+I+RD+KP+N+LL K GH+ L DF      D + M  C           P+
Sbjct: 186 ALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVHCDTAVGTPDYISPE 245
Query: 464 VFYHAHVNGFYFIMYKWLT-GYFTY 487
           V      +G+Y     W + G F +
Sbjct: 246 VLKSQGGDGYYGRECDWWSVGVFLF 270

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           ++    ++ +K +G G  G V LV  +   ++YAMK + K  M+ R+       ER+IM+
Sbjct: 70  RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMA 129
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
             + P++  L+ +FQ   ++ ++ ++ PGG+L  L+    +    E  ARFY AEVV+ L
Sbjct: 130 FANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVP---EKWARFYTAEVVLAL 186
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           + +H +G I+RD+KP+N+LL K GH+ L DF
Sbjct: 187 DAIHSMGFIHRDVKPDNMLLDKSGHLKLADF 217

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           ++    ++ +K +G G  G V LV  +   ++YAMK + K  M+ R+       ER+IM+
Sbjct: 70  RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMA 129
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
             + P++  L+ +FQ   ++ ++ ++ PGG+L  L+    +    E  ARFY AEVV+ L
Sbjct: 130 FANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVP---EKWARFYTAEVVLAL 186
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           + +H +G I+RD+KP+N+LL K GH+ L DF
Sbjct: 187 DAIHSMGFIHRDVKPDNMLLDKSGHLKLADF 217

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
            G+ +++ L  F  +  LG G  G V L E +G  ELYA+K ++K V++  + V    +E
Sbjct: 11  NGNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVE 70
Query: 357 REIMSLLDHP-FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           + +++L   P FL  L++ FQT   +  + ++  GG+L   +  Q +  F+E  A FYAA
Sbjct: 71  KRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHI--QQVGRFKEPHAVFYAA 128
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           E+ IGL +L   GIIYRDLK +N++L  +GH+ + DF +
Sbjct: 129 EIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM 167

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
            G+ +++ L  F  +  LG G  G V L E +G  ELYA+K ++K V++  + V    +E
Sbjct: 332 NGNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVE 391
Query: 357 REIMSLLDHP-FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           + +++L   P FL  L++ FQT   +  + ++  GG+L   +  Q +  F+E  A FYAA
Sbjct: 392 KRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHI--QQVGRFKEPHAVFYAA 449
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           E+ IGL +L   GIIYRDLK +N++L  +GH+ + DF +
Sbjct: 450 EIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM 488

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           G+ + +GL  F  ++ +G G    V LV L+    +YAMK ++K ++ +   +     E+
Sbjct: 1   GAMDPLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEK 60
Query: 358 EIMSLL-DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
            +     +HPFL  L++ FQT + +  + ++  GG+L   + +Q  +   E+ ARFY+AE
Sbjct: 61  HVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAE 118
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           + + L YLH  GIIYRDLK +N+LL  +GH+ LTD+ +
Sbjct: 119 ISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM 156

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE 358
           +   +GL  F  ++ +G G    V LV L+    +YAMK ++K ++ +   +     E+ 
Sbjct: 13  ASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKH 72
Query: 359 IMSLL-DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           +     +HPFL  L++ FQT + +  + ++  GG+L   + +Q  +   E+ ARFY+AE+
Sbjct: 73  VFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEI 130
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
            + L YLH  GIIYRDLK +N+LL  +GH+ LTD+ +
Sbjct: 131 SLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM 167

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           +GL  F  ++ +G G    V LV L+    +YAMK ++K ++ +   +     E+ +   
Sbjct: 2   LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ 61
Query: 363 L-DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
             +HPFL  L++ FQT + +  + ++  GG+L   + +Q  +   E+ ARFY+AE+ + L
Sbjct: 62  ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLAL 119
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
            YLH  GIIYRDLK +N+LL  +GH+ LTD+ +
Sbjct: 120 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM 152

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE 358
           +   +GL  F  ++ +G G    V LV L+    +YAM+ ++K ++ +   +     E+ 
Sbjct: 45  ASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKH 104
Query: 359 IMSLL-DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           +     +HPFL  L++ FQT + +  + ++  GG+L   + +Q  +   E+ ARFY+AE+
Sbjct: 105 VFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEI 162
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
            + L YLH  GIIYRDLK +N+LL  +GH+ LTD+ +
Sbjct: 163 SLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM 199

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI--EREIMSLLDH 365
           F+ IK +G G  G V +V+++    +YAMK + K  ML R +   AC   ER+++   D 
Sbjct: 92  FEIIKVIGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAET--ACFREERDVLVNGDC 149
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
            ++  L+ +FQ   H+ L+ D+  GG+L  LL K   K+  ED ARFY  E+V+ ++ +H
Sbjct: 150 QWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKL-PEDMARFYIGEMVLAIDSIH 208
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDF 452
            L  ++RD+KP+N+LL  +GH+ L DF
Sbjct: 209 QLHYVHRDIKPDNVLLDVNGHIRLADF 235

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI--EREIMSLLDH 365
           F+ IK +G G  G V +V+++    +YAMK + K  ML R +   AC   ER+++   D 
Sbjct: 76  FEIIKVIGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAET--ACFREERDVLVNGDC 133
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
            ++  L+ +FQ   H+ L+ D+  GG+L  LL K   K+  ED ARFY  E+V+ ++ +H
Sbjct: 134 QWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKL-PEDMARFYIGEMVLAIDSIH 192
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDF 452
            L  ++RD+KP+N+LL  +GH+ L DF
Sbjct: 193 QLHYVHRDIKPDNVLLDVNGHIRLADF 219

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 100/163 (61%), Gaps = 7/163 (4%)
Query: 294 QKITGSGEKIGLHH--FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH 351
           +  T   +++ LH   F+ +K +G G  G V +V+L+ A +++AMK + K  ML R +  
Sbjct: 60  KPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAET- 118
Query: 352 RACI--EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
            AC   ER+++   D  ++ TL+ +FQ   ++ L+ D+  GG+L  LL K   ++  E+ 
Sbjct: 119 -ACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRL-PEEM 176
Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           ARFY AE+VI ++ +H L  ++RD+KP+NIL+  +GH+ L DF
Sbjct: 177 ARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADF 219

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ +K +G G    V +V+++  G++YAMK M K  ML R +V     ER+++   D  +
Sbjct: 63  FEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRW 122
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L+ +FQ   ++ L+ ++  GG+L  LL K   +I  E  ARFY AE+V+ ++ +H L
Sbjct: 123 ITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAE-MARFYLAEIVMAIDSVHRL 181
Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
           G ++RD+KP+NILL + GH+ L DF
Sbjct: 182 GYVHRDIKPDNILLDRCGHIRLADF 206

>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor Aureochrome1 Lov Length = 170

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 75/152 (49%), Gaps = 42/152 (27%)
Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI 128
           L   L+  ++NFVITD  +PDNPI++AS  FL LT Y+ ++ILGRNC FL+  E      
Sbjct: 41  LVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPE------ 94
Query: 129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLI 188
                                               +D   V KIR+A+ +  + +V L+
Sbjct: 95  ------------------------------------TDPRAVDKIRNAITKGVDTSVCLL 118
Query: 189 NYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQ 220
           NY + G  FWNLF +  +RD KG +  ++GVQ
Sbjct: 119 NYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQ 150

>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor Aureochrome1 Lov Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 75/152 (49%), Gaps = 42/152 (27%)
Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI 128
           L   L+  ++NFVITD  +PDNPI++AS  FL LT Y+ ++ILGRNC FL+  E      
Sbjct: 37  LVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPE------ 90
Query: 129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLI 188
                                               +D   V KIR+A+ +  + +V L+
Sbjct: 91  ------------------------------------TDPRAVDKIRNAITKGVDTSVCLL 114
Query: 189 NYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQ 220
           NY + G  FWNLF +  +RD KG +  ++GVQ
Sbjct: 115 NYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQ 146

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + ++ F   + +G G  G V+       G++YAMK ++K  +  +     A  ER ++SL
Sbjct: 186 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL 245
Query: 363 L---DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +   D PF+  +  +F T   +  I D   GG+L   L +    +F E   RFYAAE+++
Sbjct: 246 VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIIL 303
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GLE++H   ++YRDLKP NILL + GHV ++D  L+
Sbjct: 304 GLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + ++ F   + +G G  G V+       G++YAMK ++K  +  +     A  ER ++SL
Sbjct: 185 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL 244
Query: 363 L---DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +   D PF+  +  +F T   +  I D   GG+L   L +    +F E   RFYAAE+++
Sbjct: 245 VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIIL 302
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GLE++H   ++YRDLKP NILL + GHV ++D  L+
Sbjct: 303 GLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 338

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + ++ F   + +G G  G V+       G++YAMK ++K  +  +     A  ER ++SL
Sbjct: 186 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL 245
Query: 363 L---DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +   D PF+  +  +F T   +  I D   GG+L   L +    +F E   RFYAAE+++
Sbjct: 246 VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIIL 303
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GLE++H   ++YRDLKP NILL + GHV ++D  L+
Sbjct: 304 GLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + ++ F   + +G G  G V+       G++YAMK ++K  +  +     A  ER ++SL
Sbjct: 186 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL 245
Query: 363 L---DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +   D PF+  +  +F T   +  I D   GG+L   L +    +F E   RFYAAE+++
Sbjct: 246 VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIIL 303
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GLE++H   ++YRDLKP NILL + GHV ++D  L+
Sbjct: 304 GLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
            + +G   F   + LG G  G V   +++  G+LYA K + K  +  R     A +E++I
Sbjct: 179 AQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKI 238
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL----FALLDKQPMKIFREDSARFYAA 415
           ++ +   F+ +L  +F+T T +CL+     GG++    + + +  P   F+E  A FY A
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPG--FQEPRAIFYTA 296
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++V GLE+LH   IIYRDLKPEN+LL  DG+V ++D  L+
Sbjct: 297 QIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
            + +G   F   + LG G  G V   +++  G+LYA K + K  +  R     A +E++I
Sbjct: 179 AQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKI 238
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL----FALLDKQPMKIFREDSARFYAA 415
           ++ +   F+ +L  +F+T T +CL+     GG++    + + +  P   F+E  A FY A
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPG--FQEPRAIFYTA 296
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++V GLE+LH   IIYRDLKPEN+LL  DG+V ++D  L+
Sbjct: 297 QIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
            + +G   F   + LG G  G V   +++  G+LYA K + K  +  R     A +E++I
Sbjct: 179 AQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKI 238
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL----FALLDKQPMKIFREDSARFYAA 415
           ++ +   F+ +L  +F+T T +CL+     GG++    + + +  P   F+E  A FY A
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPG--FQEPRAIFYTA 296
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++V GLE+LH   IIYRDLKPEN+LL  DG+V ++D  L+
Sbjct: 297 QIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
            + +G   F   + LG G  G V   +++  G+LYA K + K  +  R     A +E++I
Sbjct: 179 AQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKI 238
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL----FALLDKQPMKIFREDSARFYAA 415
           ++ +   F+ +L  +F+T T +CL+     GG++    + + +  P   F+E  A FY A
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPG--FQEPRAIFYTA 296
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++V GLE+LH   IIYRDLKPEN+LL  DG+V ++D  L+
Sbjct: 297 QIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336

>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From Arabidopsis Thaliana Length = 130

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 42/166 (25%)
Query: 68  DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREE 127
           +L T L  +++ FV++D   P  PI++AS  F  +T Y+ +EI+GRNC FL+  +     
Sbjct: 7   ELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPD----- 61
Query: 128 ILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQL 187
                                                +D+  V+KIRD V+  +    +L
Sbjct: 62  -------------------------------------TDKNEVAKIRDCVKNGKSYCGRL 84
Query: 188 INYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNR 233
           +NY K G  FWNL  + P++D +G    FIG+Q++ S + E + ++
Sbjct: 85  LNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDK 130

>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory Protein From Brucella Abortus (Dark State). Length = 128

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 42/143 (29%)
Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            +IT+P +PDNPI+FA                  N +FL+LT Y  +E++GRNC      
Sbjct: 10  MLITNPHLPDNPIVFA------------------NPAFLKLTGYEADEVMGRNCR----- 46
Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
             FL    + +G             +D A V  I+ A+  ++ I + +INY KSG+ FWN
Sbjct: 47  --FL----QGHG-------------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWN 87
Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
             H+ P+ +  G LQ+F+  QLD
Sbjct: 88  RLHISPVHNANGRLQHFVSSQLD 110

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P GE++  L K  +  F E     Y  E+   L Y
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQK--LSKFDEQRTATYITELANALSY 128
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 7/166 (4%)
Query: 290 WIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNK 349
           W+  Q +T        + F+  + LG G  G V   +++  G++YA K +EK  +  R  
Sbjct: 175 WLERQPVTK-------NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKG 227
Query: 350 VHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
              A  E++I+  ++  F+ +L  +++T   +CL+     GG+L   +       F E  
Sbjct: 228 EAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEAR 287
Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           A FYAAE+  GLE LH   I+YRDLKPENILL   GH+ ++D  L+
Sbjct: 288 AVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLA 333

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P GE++  L K  +  F E     Y  E+   L Y
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQK--LSKFDEQRTATYITELANALSY 128
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 7/166 (4%)
Query: 290 WIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNK 349
           W+  Q +T        + F+  + LG G  G V   +++  G++YA K +EK  +  R  
Sbjct: 175 WLERQPVTK-------NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKG 227
Query: 350 VHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
              A  E++I+  ++  F+ +L  +++T   +CL+     GG+L   +       F E  
Sbjct: 228 EAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEAR 287
Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           A FYAAE+  GLE LH   I+YRDLKPENILL   GH+ ++D  L+
Sbjct: 288 AVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLA 333

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           GS  +  L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E 
Sbjct: 4   GSKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 63
Query: 358 EIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           EI S L HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+
Sbjct: 64  EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITEL 121
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              L Y H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 122 ANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 159

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           GS  +  L  F   +PLG G  G+V+L   + +  + A+K + K+ +      H+   E 
Sbjct: 4   GSKRQWTLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREV 63
Query: 358 EIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           EI S L HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+
Sbjct: 64  EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSRFDEQRTATYITEL 121
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              L Y H   +I+RD+KPEN+LL  +G + + DF  S
Sbjct: 122 ANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWS 159

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           GS  +  L  F   +PLG G  G+V+L   + +  + A+K + K+ +      H+   E 
Sbjct: 4   GSKRQWTLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREV 63
Query: 358 EIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           EI S L HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+
Sbjct: 64  EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSRFDEQRTATYITEL 121
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              L Y H   +I+RD+KPEN+LL  +G + + DF  S
Sbjct: 122 ANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWS 159

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  ST + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 66  RHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 123
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 124 CHSKKVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           G   +  L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E 
Sbjct: 1   GKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 60
Query: 358 EIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           EI S L HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+
Sbjct: 61  EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITEL 118
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              L Y H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 119 ANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 156

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Query: 276 QPVFPRPHKRDNSSWIAIQKITGSGEKI-GLHHFKPIKPLGCGDTGSVHLVELQGAGELY 334
           QP+   P         + QK   S ++   L  F+  +PLG G  G+V+L   + +  + 
Sbjct: 3   QPLPSAPENNPEEELASKQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFIL 62
Query: 335 AMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELF 394
           A+K + K+ +      H+   E EI S L HP +  LY  F  +T + LI ++ P G ++
Sbjct: 63  ALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 122
Query: 395 ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
             L K  +  F E     Y  E+   L Y H   +I+RD+KPEN+LL   G + + DF  
Sbjct: 123 RELQK--LSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW 180
Query: 455 S 455
           S
Sbjct: 181 S 181

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T  GEKI    FK    LG G    V+  E    G   A+K ++K  M     V R   E
Sbjct: 4   TCIGEKI--EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNE 61
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
            +I   L HP +  LY  F+ S ++ L+ + C  GE+   L K  +K F E+ AR +  +
Sbjct: 62  VKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYL-KNRVKPFSENEARHFMHQ 120
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ G+ YLH  GI++RDL   N+LL ++ ++ + DF L+
Sbjct: 121 IITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLA 159

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Query: 276 QPVFPRPHKRDNSSWIAIQKITGSGEK-IGLHHFKPIKPLGCGDTGSVHLVELQGAGELY 334
           QP+   P         + QK   S ++   L  F+  +PLG G  G+V+L   + +  + 
Sbjct: 3   QPLPSAPENNPEEELASKQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFIL 62
Query: 335 AMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELF 394
           A+K + K+ +      H+   E EI S L HP +  LY  F  +T + LI ++ P G ++
Sbjct: 63  ALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 122
Query: 395 ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
             L K  +  F E     Y  E+   L Y H   +I+RD+KPEN+LL   G + + DF  
Sbjct: 123 RELQK--LSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW 180
Query: 455 S 455
           S
Sbjct: 181 S 181

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 83  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 140
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 141 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 172

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 128
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 126
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 125
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 126 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 157

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 124
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 156

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 124
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 156

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 123
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 123
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 128
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 126
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 123
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 128
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 126
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 126
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 65  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 122
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 123 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 154

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 123
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 123
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 123
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 123
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 126
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From Chlamydomonas Reinhardtii In The Dark State. Length = 109

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 42/147 (28%)
Query: 76  IEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCST 135
           +   FV+ D  +PD P+++AS+ F  +T Y  +E+LG NC FL+                
Sbjct: 2   LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGE-------------- 47
Query: 136 YTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGK 195
                                        +D   V KIRDA+++    +V+L+NY K G 
Sbjct: 48  ----------------------------GTDPKEVQKIRDAIKKGEACSVRLLNYRKDGT 79
Query: 196 KFWNLFHLQPMRDHKGELQYFIGVQLD 222
            FWNL  + P++   G +  F+GVQ+D
Sbjct: 80  PFWNLLTVTPIKTPDGRVSKFVGVQVD 106

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   +    + A+K + K+ +      H+   E EI S L
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 63  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 120
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 121 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS 152

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 125
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + +F  S
Sbjct: 126 CHSKRVIHRDIKPENLLLGSAGELKIANFGWS 157

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSY 126
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            H   +I+RD+KPEN+LL   G + + +F  S
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIANFGWS 158

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  G V +   +G     A K + K  +     V R   E EIM  LDHP +  LY 
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV---EDVDRFKQEIEIMKSLDHPNIIRLYE 73
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           +F+ +T I L+ + C GGELF  +  +  ++FRE  A     +V+  + Y H L + +RD
Sbjct: 74  TFEDNTDIYLVMELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHKLNVAHRD 131
Query: 434 LKPENILL---QKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
           LKPEN L      D  + L DF L+     KP       V   Y++  + L G +
Sbjct: 132 LKPENFLFLTDSPDSPLKLIDFGLA--ARFKPGKMMRTKVGTPYYVSPQVLEGLY 184

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  G V +   +G     A K + K  +     V R   E EIM  LDHP +  LY 
Sbjct: 34  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV---EDVDRFKQEIEIMKSLDHPNIIRLYE 90
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           +F+ +T I L+ + C GGELF  +  +  ++FRE  A     +V+  + Y H L + +RD
Sbjct: 91  TFEDNTDIYLVMELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHKLNVAHRD 148
Query: 434 LKPENILL---QKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
           LKPEN L      D  + L DF L+     KP       V   Y++  + L G +
Sbjct: 149 LKPENFLFLTDSPDSPLKLIDFGLA--ARFKPGKMMRTKVGTPYYVSPQVLEGLY 201

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 2/154 (1%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K  +  F  ++PLG G  G+V+L   +    + A+K + KS +      H+   E EI S
Sbjct: 10  KFTIDDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQS 69
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            L HP +  +Y  F     I L+ +F P GEL+  L K     F E  +  +  E+   L
Sbjct: 70  HLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGR--FDEQRSATFMEELADAL 127
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            Y H   +I+RD+KPEN+L+   G + + DF  S
Sbjct: 128 HYCHERKVIHRDIKPENLLMGYKGELKIADFGWS 161

>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The Dimeric Lov Photosensor Ytva (dark Structure) Length = 132

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 44/150 (29%)
Query: 73  LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRN 132
           L+ +    VITDP + DNPI++ +  F+++T Y  EEILG+NC FL+          G++
Sbjct: 5   LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQ----------GKH 54
Query: 133 CSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTK 192
                                           +D A V  IR A++ +  +TVQ+ NY K
Sbjct: 55  --------------------------------TDPAEVDNIRTALQNKEPVTVQIQNYKK 82
Query: 193 SGKKFWNLFHLQPMRDHKGELQYFIGVQLD 222
            G  FWN  ++ PM     +  YF+G+Q D
Sbjct: 83  DGTMFWNELNIDPMEIE--DKTYFVGIQND 110

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           ++ +G G  G   LV+    G  Y +K +  S M ++ +   +  E  +++ + HP +  
Sbjct: 29  LQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKER-EESRREVAVLANMKHPNIVQ 87
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
              SF+ +  + ++ D+C GG+LF  ++ Q   +F+ED    +  ++ + L+++H   I+
Sbjct: 88  YRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKIL 147
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RD+K +NI L KDG V L DF ++
Sbjct: 148 HRDIKSQNIFLTKDGTVQLGDFGIA 172

>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From Arabidopsis Thaliana Length = 129

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 42/164 (25%)
Query: 68  DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREE 127
           DL   L   ++ FV++D   PD PI++AS                    F  +T YT +E
Sbjct: 8   DLKDALSTFQQTFVVSDATKPDYPIMYAS------------------AGFFNMTGYTSKE 49
Query: 128 ILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQL 187
           ++GRNC                     F  G      +D   ++KIR+ +        ++
Sbjct: 50  VVGRNC--------------------RFLQGS----GTDADELAKIRETLAAGNNYCGRI 85
Query: 188 INYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLR 231
           +NY K G  FWNL  + P++D  G++  FIG+Q++ S H E  +
Sbjct: 86  LNYKKDGTSFWNLLTIAPIKDESGKVLKFIGMQVEVSKHTEGAK 129

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 2/144 (1%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           +PLG G  G+V+L   +    + A+K + KS +      H+   E EI S L HP +  +
Sbjct: 21  RPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRM 80
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y  F     I L+ +F P GEL+  L K     F E  +  +  E+   L Y H   +I+
Sbjct: 81  YNYFHDRKRIYLMLEFAPRGELYKELQKHGR--FDEQRSATFMEELADALHYCHERKVIH 138
Query: 432 RDLKPENILLQKDGHVVLTDFDLS 455
           RD+KPEN+L+   G + + DF  S
Sbjct: 139 RDIKPENLLMGYKGELKIADFGWS 162

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIERE--IMSLL 363
           H++  + LG G    V     +G G+ YA K ++K  + + R  V R  IERE  I+  +
Sbjct: 27  HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLXSSRRGVSREEIEREVNILREI 86
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP + TL+  F+  T + LI +   GGELF  L ++  +   ED A  +  +++ G+ Y
Sbjct: 87  RHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHY 144
Query: 424 LHCLGIIYRDLKPENILL 441
           LH   I + DLKPENI+L
Sbjct: 145 LHSKRIAHFDLKPENIML 162

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           GS E+  + +++ +K +G G+   V L      G   A+K ++K+  LN   + +   E 
Sbjct: 4   GSDEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKT-QLNPTSLQKLFREV 62
Query: 358 EIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
            IM +L+HP +  L+   +T   + LI ++  GGE+F  L        +E  AR    ++
Sbjct: 63  RIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGR--MKEKEARSKFRQI 120
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           V  ++Y H   I++RDLK EN+LL  D ++ + DF  S
Sbjct: 121 VSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS 158

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSL--L 363
           H++  + LG G    V     +G G+ YA K ++K  + + R  V R  IERE+  L  +
Sbjct: 6   HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI 65
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP + TL+  F+  T + LI +   GGELF  L ++  +   ED A  +  +++ G+ Y
Sbjct: 66  RHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHY 123
Query: 424 LHCLGIIYRDLKPENILL 441
           LH   I + DLKPENI+L
Sbjct: 124 LHSKRIAHFDLKPENIML 141

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIERE--IMSLL 363
           H++  + LG G    V     +G G+ YA K ++K  + + R  V R  IERE  I+  +
Sbjct: 13  HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI 72
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP + TL+  F+  T + LI +   GGELF  L ++  +   ED A  +  +++ G+ Y
Sbjct: 73  RHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHY 130
Query: 424 LHCLGIIYRDLKPENILL 441
           LH   I + DLKPENI+L
Sbjct: 131 LHSKRIAHFDLKPENIML 148

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 9/160 (5%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
             G  IG  +++ +K LG G  G V L      G+  A+K + K V+   +   R  IER
Sbjct: 8   ADGAHIG--NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGR--IER 63
Query: 358 EI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           EI  + LL HP +  LY   ++   I ++ ++  G ELF  +  Q  K+  +++ RF+  
Sbjct: 64  EISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYI-VQRDKMSEQEARRFFQ- 120
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++  +EY H   I++RDLKPEN+LL +  +V + DF LS
Sbjct: 121 QIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS 160

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 9/160 (5%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
             G  IG  +++ +K LG G  G V L      G+  A+K + K V+   +   R  IER
Sbjct: 7   ADGAHIG--NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGR--IER 62
Query: 358 EI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           EI  + LL HP +  LY   ++   I ++ ++  G ELF  +  Q  K+  +++ RF+  
Sbjct: 63  EISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYI-VQRDKMSEQEARRFFQ- 119
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++  +EY H   I++RDLKPEN+LL +  +V + DF LS
Sbjct: 120 QIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS 159

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T + E+  + +++ +K +G G+   V L      G+  A+K ++K+  LN + + +   E
Sbjct: 5   TSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKT-QLNSSSLQKLFRE 63
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             IM +L+HP +  L+   +T   + L+ ++  GGE+F  L        +E  AR    +
Sbjct: 64  VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGR--MKEKEARAKFRQ 121
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V  ++Y H   I++RDLK EN+LL  D ++ + DF  S
Sbjct: 122 IVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T + E+  + +++ +K +G G+   V L      G+  A+K ++K+  LN + + +   E
Sbjct: 5   TSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKT-QLNSSSLQKLFRE 63
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             IM +L+HP +  L+   +T   + L+ ++  GGE+F  L        +E  AR    +
Sbjct: 64  VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGR--MKEKEARAKFRQ 121
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V  ++Y H   I++RDLK EN+LL  D ++ + DF  S
Sbjct: 122 IVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T + E+  + +++ +K +G G+   V L      G+  A+K ++K+  LN + + +   E
Sbjct: 5   TSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKT-QLNSSSLQKLFRE 63
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             IM +L+HP +  L+   +T   + L+ ++  GGE+F  L        +E  AR    +
Sbjct: 64  VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGR--MKEKEARAKFRQ 121
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V  ++Y H   I++RDLK EN+LL  D ++ + DF  S
Sbjct: 122 IVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G    V LV+ +  G+L+A+K ++KS     + +     E  ++  + H  + TL  
Sbjct: 17  LGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLEN---EIAVLKKIKHENIVTLED 73
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            ++++TH  L+     GGELF  + ++   ++ E  A     +V+  ++YLH  GI++RD
Sbjct: 74  IYESTTHYYLVMQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHENGIVHRD 131
Query: 434 LKPENILL---QKDGHVVLTDFDLSFM 457
           LKPEN+L    +++  +++TDF LS M
Sbjct: 132 LKPENLLYLTPEENSKIMITDFGLSKM 158

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 9/145 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDHPFLPTL 371
           LG G  G V L       +  A+K + +  +L ++ +H   +EREI  + LL HP +  L
Sbjct: 17  LGEGSFGKVKLATHYKTQQKVALKFISRQ-LLKKSDMHMR-VEREISYLKLLRHPHIIKL 74
Query: 372 YASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           Y    T T I ++ ++  GGELF  +++K+ M    ED  R +  +++  +EY H   I+
Sbjct: 75  YDVITTPTDIVMVIEYA-GGELFDYIVEKKRMT---EDEGRRFFQQIICAIEYCHRHKIV 130
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDLKPEN+LL  + +V + DF LS
Sbjct: 131 HRDLKPENLLLDDNLNVKIADFGLS 155

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 9/160 (5%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
             G  IG  +++ +K LG G  G V L      G+  A+K + K V+   +   R  IER
Sbjct: 2   ADGAHIG--NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGR--IER 57
Query: 358 EI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           EI  + LL HP +  LY   ++   I ++ ++  G ELF  +  Q  K+  +++ RF+  
Sbjct: 58  EISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYI-VQRDKMSEQEARRFFQ- 114
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++  +EY H   I++RDLKPEN+LL +  +V + DF LS
Sbjct: 115 QIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS 154

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T + E+  + +++ +K +G G+   V L      G+  A++ ++K+  LN + + +   E
Sbjct: 5   TSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKT-QLNSSSLQKLFRE 63
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             IM +L+HP +  L+   +T   + L+ ++  GGE+F  L        +E  AR    +
Sbjct: 64  VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGR--MKEKEARAKFRQ 121
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V  ++Y H   I++RDLK EN+LL  D ++ + DF  S
Sbjct: 122 IVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T + E+  + +++ +K +G G+   V L      G+  A++ ++K+  LN + + +   E
Sbjct: 5   TSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKT-QLNSSSLQKLFRE 63
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             IM +L+HP +  L+   +T   + L+ ++  GGE+F  L        +E  AR    +
Sbjct: 64  VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGR--MKEKEARAKFRQ 121
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V  ++Y H   I++RDLK EN+LL  D ++ + DF  S
Sbjct: 122 IVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLD 364
           +++ +K LG G  G V L      G+  A+K + K V+   +   R  IEREI  + LL 
Sbjct: 5   NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGR--IEREISYLRLLR 62
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  LY   ++   I ++ ++  G ELF  + ++      E  AR +  +++  +EY 
Sbjct: 63  HPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYIVQRDK--MSEQEARRFFQQIISAVEYC 119
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H   I++RDLKPEN+LL +  +V + DF LS
Sbjct: 120 HRHKIVHRDLKPENLLLDEHLNVKIADFGLS 150

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +K  + LG G  G V L + +  G+  A+K + K  +  +        E +++  LDHP 
Sbjct: 34  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 93
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY  F+   +  L+ +   GGELF  +  +  K F E  A     +V+ G+ Y+H  
Sbjct: 94  IMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKN 151
Query: 428 GIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
            I++RDLKPEN+LL+   KD ++ + DF LS
Sbjct: 152 KIVHRDLKPENLLLESKSKDANIRIIDFGLS 182

>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal Blue-Light Photoreceptor Vivid Length = 148

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 31/143 (21%)
Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            ++ D +  D PI++AS++FL +T Y+  E+LGRNC FL+       + + +  ST  ++
Sbjct: 37  LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQ-----SPDGMVKPKSTRKYV 91
Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                     D  T++ IR A+    E+ V+++N+ K+G++F N
Sbjct: 92  --------------------------DSNTINTIRKAIDRNAEVQVEVVNFKKNGQRFVN 125
Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
              + P+RD  GE +Y +G Q +
Sbjct: 126 FLTIIPVRDETGEYRYSMGFQCE 148

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T + E+  + +++ +K +G G+   V L      G+  A+K ++K+  LN + + +   E
Sbjct: 5   TSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKT-QLNSSSLQKLFRE 63
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             I  +L+HP +  L+   +T   + L+ ++  GGE+F  L        +E  A+F   +
Sbjct: 64  VRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHGRXKEKEARAKF--RQ 121
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V  ++Y H   I++RDLK EN+LL  D ++ + DF  S
Sbjct: 122 IVSAVQYCHQKFIVHRDLKAENLLLDADXNIKIADFGFS 160

>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid (Vvd). Length = 154

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 31/143 (21%)
Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            V+ D +  D PI++AS++FL +T Y+  E+LGRNC FL+       + + +  ST  ++
Sbjct: 41  LVLCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQ-----SPDGMVKPKSTRKYV 95
Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                     D  T++ +R A+    E+ V+++N+ K+G++F N
Sbjct: 96  --------------------------DSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVN 129
Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
              + P+RD  GE +Y +G Q +
Sbjct: 130 FLTMIPVRDETGEYRYSMGFQCE 152

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +K  + LG G  G V L + +  G+  A+K + K  +  +        E +++  LDHP 
Sbjct: 28  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 87
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY  F+   +  L+ +   GGELF  +  +  K F E  A     +V+ G+ Y+H  
Sbjct: 88  IMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKN 145
Query: 428 GIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
            I++RDLKPEN+LL+   KD ++ + DF LS
Sbjct: 146 KIVHRDLKPENLLLESKSKDANIRIIDFGLS 176

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ +K LG G  G V L + +  G   A+K ++KS +   +       E  ++  LDHP 
Sbjct: 6   YQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHPN 65
Query: 368 LPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +  LY  F+   +  L+ +   GGELF  ++ +Q    F E  A     +V+ G  YLH 
Sbjct: 66  IMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK---FSEVDAAVIMKQVLSGTTYLHK 122
Query: 427 LGIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
             I++RDLKPEN+LL+   +D  + + DF LS
Sbjct: 123 HNIVHRDLKPENLLLESKSRDALIKIVDFGLS 154

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +K  + LG G  G V L + +  G+  A+K + K  +  +        E +++  LDHP 
Sbjct: 51  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 110
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY  F+   +  L+ +   GGELF  +  +  K F E  A     +V+ G+ Y+H  
Sbjct: 111 IMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKN 168
Query: 428 GIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
            I++RDLKPEN+LL+   KD ++ + DF LS
Sbjct: 169 KIVHRDLKPENLLLESKSKDANIRIIDFGLS 199

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +K  + LG G  G V L + +  G+  A+K + K  +  +        E +++  LDHP 
Sbjct: 52  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 111
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY  F+   +  L+ +   GGELF  +  +  K F E  A     +V+ G+ Y+H  
Sbjct: 112 IMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKN 169
Query: 428 GIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
            I++RDLKPEN+LL+   KD ++ + DF LS
Sbjct: 170 KIVHRDLKPENLLLESKSKDANIRIIDFGLS 200

>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor El222 From Erythrobacter Litoralis Length = 258

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 81  VITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFML 140
           V++DPR+ DNP+I  + +F +LT Y+ EE +GRNC FL                T  ++ 
Sbjct: 77  VVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLA------------GSGTEPWL- 123
Query: 141 YFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNL 200
                                          KIR  VRE + + V+++NY K G  F N 
Sbjct: 124 -----------------------------TDKIRQGVREHKPVLVEILNYKKDGTPFRNA 154
Query: 201 FHLQPMRDHKGELQYFIGVQLDGSD 225
             + P+ D   EL YF+G Q++  D
Sbjct: 155 VLVAPIYDDDDELLYFLGSQVEVDD 179

>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of Vivid (Vvd). Length = 154

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 31/143 (21%)
Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            V+ D +  D P+++AS++FL +T Y+  E+LGRNC FL+       + + +  ST  ++
Sbjct: 41  LVLCDLKQKDTPVVYASEAFLYMTGYSNAEVLGRNCRFLQ-----SPDGMVKPKSTRKYV 95
Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                     D  T++ +R A+    E+ V+++N+ K+G++F N
Sbjct: 96  --------------------------DSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVN 129
Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
              + P+RD  GE +Y +G Q +
Sbjct: 130 FLTMIPVRDETGEYRYSMGFQCE 152

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +K  + LG G  G V L + +  G+  A+K + K  +  +        E +++  LDHP 
Sbjct: 28  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 87
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  LY  F+   +  L+ +   GGELF  +  +  K F E  A     +V+ G+ Y H  
Sbjct: 88  IXKLYEFFEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYXHKN 145
Query: 428 GIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
            I++RDLKPEN+LL+   KD ++ + DF LS
Sbjct: 146 KIVHRDLKPENLLLESKSKDANIRIIDFGLS 176

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ +K LG G  G V L + +  G   A+K ++KS +   +       E  ++  LDHP 
Sbjct: 23  YQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHPN 82
Query: 368 LPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +  LY  F+   +  L+ +   GGELF  ++ +Q    F E  A     +V+ G  YLH 
Sbjct: 83  IMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK---FSEVDAAVIMKQVLSGTTYLHK 139
Query: 427 LGIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
             I++RDLKPEN+LL+   +D  + + DF LS
Sbjct: 140 HNIVHRDLKPENLLLESKSRDALIKIVDFGLS 171

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSL 362
           L H+   + LG G  G VH V  +  G  +A K      ++  ++  +  + +EI  MS+
Sbjct: 50  LDHYDIHEELGTGAFGVVHRVTERATGNNFAAK-----FVMTPHESDKETVRKEIQTMSV 104
Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           L HP L  L+ +F+    + +I +F  GGELF  +  +  K+  ED A  Y  +V  GL 
Sbjct: 105 LRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKM-SEDEAVEYMRQVCKGLC 163
Query: 423 YLHCLGIIYRDLKPENILL--QKDGHVVLTDFDLSFMTSCKPQV 464
           ++H    ++ DLKPENI+   ++   + L DF L+     K  V
Sbjct: 164 HMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV 207

>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid Form Of Vivid Length = 154

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 31/143 (21%)
Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            ++ D +  D PI++AS++FL +T Y+  E+LGRNC FL+       + + +  ST  ++
Sbjct: 41  LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQ-----SPDGMVKPKSTRKYV 95
Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                     D  T++ +R A+    E+ V+++N+ K+G++F N
Sbjct: 96  --------------------------DSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVN 129
Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
              + P+RD  GE +Y +G Q +
Sbjct: 130 FLTMIPVRDETGEYRYSMGFQCE 152

>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In The Fungal Photoreceptor Vvd Length = 149

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 31/143 (21%)
Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            ++ D +  D PI++AS++FL +T Y+  E+LGRNC FL+       + + +  ST  ++
Sbjct: 38  LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQ-----SPDGMVKPKSTRKYV 92
Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                     D  T++ +R A+    E+ V+++N+ K+G++F N
Sbjct: 93  --------------------------DSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVN 126
Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
              + P+RD  GE +Y +G Q +
Sbjct: 127 FLTMIPVRDETGEYRYSMGFQCE 149

>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid Form Of Vivid Length = 154

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 31/143 (21%)
Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            ++ D +  D PI++AS++FL +T Y+  E+LGRNC FL+       + + +  ST  ++
Sbjct: 41  LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQ-----SPDGMVKPKSTRKYV 95
Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                     D  T++ +R A+    E+ V+++N+ K+G++F N
Sbjct: 96  --------------------------DSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVN 129
Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
              + P+RD  GE +Y +G Q +
Sbjct: 130 FLTMIPVRDETGEYRYSMGFQCE 152

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS--LLDH 365
           ++ +K +G G+ G   L+  + A EL A+K +E+   ++ N      ++REI++   L H
Sbjct: 21  YELVKDIGAGNFGVARLMRDKQANELVAVKYIERGEKIDEN------VKREIINHRSLRH 74
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +        T TH+ ++ ++  GGELF  +       F ED ARF+  +++ G+ Y H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGR--FSEDEARFFFQQLISGVSYAH 132
Query: 426 CLGIIYRDLKPENILL 441
            + + +RDLK EN LL
Sbjct: 133 AMQVAHRDLKLENTLL 148

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
           +++ +K +G G+   V L      G+  A+K ++K+  LN + + +   E  IM +L+HP
Sbjct: 8   NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKT-QLNSSSLQKLFREVRIMKVLNHP 66
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  L+   +T   + L+ ++  GGE+F  L        +E  AR    ++V  ++Y H 
Sbjct: 67  NIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGW--MKEKEARAKFRQIVSAVQYCHQ 124
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             I++RDLK EN+LL  D ++ + DF  S
Sbjct: 125 KFIVHRDLKAENLLLDADMNIKIADFGFS 153

>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light Photoreceptor Vivid Length = 149

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 31/143 (21%)
Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            ++ D +  D PI++AS++FL +T Y+  E+LGRNC FL+       + + +  ST  ++
Sbjct: 38  LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQ-----SPDGMVKPKSTRKYV 92
Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                     D  T++ +R A+    E+ V+++N+ K+G++F N
Sbjct: 93  --------------------------DSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVN 126
Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
              + P+RD  GE +Y +G Q +
Sbjct: 127 FLTMIPVRDETGEYRYSMGFQCE 149

>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of Vivid Length = 149

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 31/143 (21%)
Query: 80  FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFM 139
            ++ D +  D PI++AS++FL +T Y+  E+LGRNC FL+       + + +  ST  ++
Sbjct: 38  LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQ-----SPDGMVKPKSTRKYV 92
Query: 140 LYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWN 199
                                     D  T++ +R A+    E+ V+++N+ K+G++F N
Sbjct: 93  --------------------------DSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVN 126
Query: 200 LFHLQPMRDHKGELQYFIGVQLD 222
              + P+RD  GE +Y +G Q +
Sbjct: 127 FLTMIPVRDETGEYRYSMGFQCE 149

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +++ +K +G G+   V L      G   A+K ++K+  LN   + +   E  IM +L+
Sbjct: 14  IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKT-QLNPTSLQKLFREVRIMKILN 72
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L+   +T   + LI ++  GGE+F  L        +E  AR    ++V  ++Y 
Sbjct: 73  HPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGR--MKEKEARSKFRQIVSAVQYC 130
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS--FMTSCKPQVFYHA 468
           H   I++RDLK EN+LL  D ++ + DF  S  F    K   F  A
Sbjct: 131 HQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGA 176

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 27/202 (13%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSL 362
           L H+   + LG G  G VH V  +  G  +A K      ++  ++  +  + +EI  MS+
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAK-----FVMTPHESDKETVRKEIQTMSV 210
Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           L HP L  L+ +F+    + +I +F  GGELF  +  +  K+  ED A  Y  +V  GL 
Sbjct: 211 LRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKM-SEDEAVEYMRQVCKGLC 269
Query: 423 YLHCLGIIYRDLKPENILL--QKDGHVVLTDFDLSFMTSCK--------------PQVFY 466
           ++H    ++ DLKPENI+   ++   + L DF L+     K              P+V  
Sbjct: 270 HMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAE 329
Query: 467 HAHVNGFYFIMYKWLTGYFTYV 488
              V G+Y  M  W  G  +Y+
Sbjct: 330 GKPV-GYYTDM--WSVGVLSYI 348

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN------------ 346
           SG+ + L+ +     +G G  G V L   +     YAMK + K  ++             
Sbjct: 6   SGDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRG 65
Query: 347 -----------RNKVHRACIEREIMSLLDHPFLPTLYASFQ--TSTHICLITDFCPGGEL 393
                      R  + +   E  I+  LDHP +  L          H+ ++ +    G +
Sbjct: 66  TRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPV 125
Query: 394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFD 453
             +   +P+    ED ARFY  +++ G+EYLH   II+RD+KP N+L+ +DGH+ + DF 
Sbjct: 126 MEVPTLKPLS---EDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFG 182
Query: 454 LS 455
           +S
Sbjct: 183 VS 184

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 18/168 (10%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-------NRN--KVHR 352
           KIG  +FK ++ LG G  G V L + +      A+K ++KS          N+N  K H 
Sbjct: 33  KIGESYFK-VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHE 91
Query: 353 ACI-EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSA 410
               E  ++  LDHP +  L+  F+   +  L+T+F  GGELF  ++++     F E  A
Sbjct: 92  EIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHK---FDECDA 148
Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---HVVLTDFDLS 455
                +++ G+ YLH   I++RD+KPENILL+      ++ + DF LS
Sbjct: 149 ANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLS 196

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V   + +   + YA+K + K+   N++       E E++  LDHP +  L+ 
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKD-TSTILREVELLKKLDHPNIMKLFE 88
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
             + S+   ++ +   GGELF  + K+  K F E  A     +V  G+ Y+H   I++RD
Sbjct: 89  ILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHNIVHRD 146
Query: 434 LKPENILL---QKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
           LKPENILL   +KD  + + DF LS  T  +        +   Y+I  + L G +
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLS--TCFQQNTKMKDRIGTAYYIAPEVLRGTY 199

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           + + E+  + +++  K +G G+   V L      G   A+K ++K+  LN   + +   E
Sbjct: 6   SATDEQPHIGNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKT-QLNPTSLQKLFRE 64
Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             IM +L+HP +  L+   +T   + L+ ++  GGE+F  L        +E  AR    +
Sbjct: 65  VRIMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGR--MKEKEARAKFRQ 122
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +V  ++Y H   I++RDLK EN+LL  D ++ + DF  S
Sbjct: 123 IVSAVQYCHQKYIVHRDLKAENLLLDGDMNIKIADFGFS 161

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTL 371
           LG G    V L E +  G+L+A+K + K  +    K   + IE EI  L  + H  +  L
Sbjct: 30  LGTGAFSEVVLAEEKATGKLFAVKCIPKKAL----KGKESSIENEIAVLRKIKHENIVAL 85
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
              +++  H+ L+     GGELF  + ++    + E  A     +V+  + YLH +GI++
Sbjct: 86  EDIYESPNHLYLVMQLVSGGELFDRIVEKGF--YTEKDASTLIRQVLDAVYYLHRMGIVH 143
Query: 432 RDLKPENILL---QKDGHVVLTDFDLSFM 457
           RDLKPEN+L     ++  ++++DF LS M
Sbjct: 144 RDLKPENLLYYSQDEESKIMISDFGLSKM 172

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTL 371
           LG G    V L E +   +L A+K + K  +  +       +E EI  L  + HP +  L
Sbjct: 26  LGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGK----EGSMENEIAVLHKIKHPNIVAL 81
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
              +++  H+ LI     GGELF  + ++     R+ S   +  +V+  ++YLH LGI++
Sbjct: 82  DDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIF--QVLDAVKYLHDLGIVH 139
Query: 432 RDLKPENIL---LQKDGHVVLTDFDLSFM 457
           RDLKPEN+L   L +D  ++++DF LS M
Sbjct: 140 RDLKPENLLYYSLDEDSKIMISDFGLSKM 168

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTL 371
           LG G    V L E +   +L A+K + K  +  +       +E EI  L  + HP +  L
Sbjct: 26  LGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGK----EGSMENEIAVLHKIKHPNIVAL 81
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
              +++  H+ LI     GGELF  + ++     R+ S   +  +V+  ++YLH LGI++
Sbjct: 82  DDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIF--QVLDAVKYLHDLGIVH 139
Query: 432 RDLKPENIL---LQKDGHVVLTDFDLSFM 457
           RDLKPEN+L   L +D  ++++DF LS M
Sbjct: 140 RDLKPENLLYYSLDEDSKIMISDFGLSKM 168

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTL 371
           LG G    V L E +   +L A+K + K  +  +       +E EI  L  + HP +  L
Sbjct: 26  LGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGK----EGSMENEIAVLHKIKHPNIVAL 81
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
              +++  H+ LI     GGELF  + ++     R+ S   +  +V+  ++YLH LGI++
Sbjct: 82  DDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIF--QVLDAVKYLHDLGIVH 139
Query: 432 RDLKPENIL---LQKDGHVVLTDFDLSFM 457
           RDLKPEN+L   L +D  ++++DF LS M
Sbjct: 140 RDLKPENLLYYSLDEDSKIMISDFGLSKM 168

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS--LLDH 365
           ++ +K +G G+ G   L+  + + EL A+K +E+   ++ N      ++REI++   L H
Sbjct: 21  YELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKIDEN------VKREIINHRSLRH 74
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +        T TH+ ++ ++  GGELF  +       F ED ARF+  +++ G+ Y H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGR--FSEDEARFFFQQLISGVSYCH 132
Query: 426 CLGIIYRDLKPENILL 441
            + + +RDLK EN LL
Sbjct: 133 AMQVCHRDLKLENTLL 148

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS--LLDH 365
           ++ +K +G G+ G   L+  + + EL A+K +E+   ++ N      ++REI++   L H
Sbjct: 20  YELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKIDEN------VKREIINHRSLRH 73
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +        T TH+ ++ ++  GGELF  +       F ED ARF+  +++ G+ Y H
Sbjct: 74  PNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGR--FSEDEARFFFQQLISGVSYCH 131
Query: 426 CLGIIYRDLKPENILL 441
            + + +RDLK EN LL
Sbjct: 132 AMQVCHRDLKLENTLL 147

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS--LLDH 365
           ++ +K +G G+ G   L+  + + EL A+K +E+   ++ N      ++REI++   L H
Sbjct: 21  YELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKIDEN------VKREIINHRSLRH 74
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +        T TH+ ++ ++  GGELF  +       F ED ARF+  +++ G+ Y H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGR--FSEDEARFFFQQLISGVSYCH 132
Query: 426 CLGIIYRDLKPENILL 441
            + + +RDLK EN LL
Sbjct: 133 AMQVCHRDLKLENTLL 148

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V   + +   + YA+K + K+   N++       E E++  LDHP +  L+ 
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKD-TSTILREVELLKKLDHPNIMKLFE 88
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
             + S+   ++ +   GGELF  + K+  K F E  A     +V  G+ Y+H   I++RD
Sbjct: 89  ILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHNIVHRD 146
Query: 434 LKPENILL---QKDGHVVLTDFDLS 455
           LKPENILL   +KD  + + DF LS
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLS 171

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR----ACIER 357
           ++ + H+     LG G  G V + E Q  G   A+K      +LNR K+        I+R
Sbjct: 7   RVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVK------ILNRQKIRSLDVVGKIKR 60
Query: 358 EI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           EI  + L  HP +  LY    T T   ++ ++  GGELF  + K       E  AR    
Sbjct: 61  EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGR--VEEMEARRLFQ 118
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           +++  ++Y H   +++RDLKPEN+LL    +  + DF LS M S
Sbjct: 119 QILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 162

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR----ACIER 357
           ++ + H+     LG G  G V + E Q  G   A+K      +LNR K+        I+R
Sbjct: 7   RVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVK------ILNRQKIRSLDVVGKIKR 60
Query: 358 EI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           EI  + L  HP +  LY    T T   ++ ++  GGELF  + K       E  AR    
Sbjct: 61  EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGR--VEEMEARRLFQ 118
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           +++  ++Y H   +++RDLKPEN+LL    +  + DF LS M S
Sbjct: 119 QILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 162

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V   + +   + YA+K + K+   N++       E E++  LDHP +  L+ 
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKD-TSTILREVELLKKLDHPNIMKLFE 88
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
             + S+   ++ +   GGELF  + K+  K F E  A     +V  G+ Y+H   I++RD
Sbjct: 89  ILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHNIVHRD 146
Query: 434 LKPENILL---QKDGHVVLTDFDLS 455
           LKPENILL   +KD  + + DF LS
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLS 171

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR----ACIER 357
           ++ + H+     LG G  G V + + +  G   A+K      +LNR K+        I R
Sbjct: 12  RVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVK------ILNRQKIRSLDVVGKIRR 65
Query: 358 EI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           EI  + L  HP +  LY    T + I ++ ++  GGELF  + K   ++  ++S R +  
Sbjct: 66  EIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNG-RLDEKESRRLFQ- 123
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           +++ G++Y H   +++RDLKPEN+LL    +  + DF LS M S
Sbjct: 124 QILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 167

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 18  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 77
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 78  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 135
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 136 HFDLKPENIML 146

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILIGELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 18  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 77
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 78  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 135
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 136 HFDLKPENIML 146

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTL 371
           LG G    V L E +   +L A+K + K  +  +       +E EI  L  + HP +  L
Sbjct: 26  LGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGK----EGSMENEIAVLHKIKHPNIVAL 81
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
              +++  H+ LI     GGELF  + ++     R+ S   +  +V+  ++YLH LGI++
Sbjct: 82  DDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIF--QVLDAVKYLHDLGIVH 139
Query: 432 RDLKPENIL---LQKDGHVVLTDFDLSFM 457
           RDLKPEN+L   L +D  ++++DF LS M
Sbjct: 140 RDLKPENLLYYSLDEDSKIMISDFGLSKM 168

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGKFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEK-SVMLNRNKVHRACIEREIMSLLDHP 366
           ++ +K LG G  G V L   +      A+K + K SV  + N   +   E  ++ LLDHP
Sbjct: 39  YQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSN--SKLLEEVAVLKLLDHP 96
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  LY  F+   +  L+ +   GGELF  +  + MK F E  A     +V+ G+ YLH 
Sbjct: 97  NIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR-MK-FNEVDAAVIIKQVLSGVTYLHK 154
Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDFDLS 455
             I++RDLKPEN+LL   +KD  + + DF LS
Sbjct: 155 HNIVHRDLKPENLLLESKEKDALIKIVDFGLS 186

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEK-SVMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIIT 79
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH   I 
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIA 137
Query: 431 YRDLKPENILLQKDG----HVVLTDFDLS 455
           + DLKPENI+L        H+ L DF L+
Sbjct: 138 HFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS--LLDH 365
           ++ +K +G G+ G   L+  + + EL A+K +E+   +  N      ++REI++   L H
Sbjct: 21  YELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKIAAN------VKREIINHRSLRH 74
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +        T TH+ ++ ++  GGELF  +       F ED ARF+  +++ G+ Y H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGR--FSEDEARFFFQQLISGVSYCH 132
Query: 426 CLGIIYRDLKPENILL 441
            + + +RDLK EN LL
Sbjct: 133 AMQVCHRDLKLENTLL 148

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS--LLDHPFL 368
           +K +G G+ G   L+  +   EL A+K +E+   ++ N      ++REI++   L HP +
Sbjct: 25  VKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDEN------VQREIINHRSLRHPNI 78
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
                   T TH+ +I ++  GGEL+  +       F ED ARF+  +++ G+ Y H + 
Sbjct: 79  VRFKEVILTPTHLAIIMEYASGGELYERICNAGR--FSEDEARFFFQQLLSGVSYCHSMQ 136
Query: 429 IIYRDLKPENILL 441
           I +RDLK EN LL
Sbjct: 137 ICHRDLKLENTLL 149

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + HP + T
Sbjct: 19  LGSGVFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L I 
Sbjct: 79  LHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIA 136
Query: 431 YRDLKPENILL 441
           + DLKPENI+L
Sbjct: 137 HFDLKPENIML 147

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G VH  E    G   A K ++   M ++ +V     E  +M+ LDH  L  LY 
Sbjct: 97  LGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKN---EISVMNQLDHANLIQLYD 153
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           +F++   I L+ ++  GGELF  +  +   +   D+  F   ++  G+ ++H + I++ D
Sbjct: 154 AFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFM-KQICEGIRHMHQMYILHLD 212
Query: 434 LKPENIL-LQKDG-HVVLTDFDLS 455
           LKPENIL + +D   + + DF L+
Sbjct: 213 LKPENILCVNRDAKQIKIIDFGLA 236

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI 355
           I GS        F+    LG G T  V+  + +G  + YA+K ++K+V     K+ R   
Sbjct: 43  IDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV---DKKIVRT-- 97
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  ++  L HP +  L   F+T T I L+ +   GGELF  + ++    + E  A     
Sbjct: 98  EIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEK--GYYSERDAADAVK 155
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLS 455
           +++  + YLH  GI++RDLKPEN+L      D  + + DF LS
Sbjct: 156 QILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLS 198

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+  + +  G L A K +E     +  ++    +E EI++  DHP++  L  
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETK---SEEELEDYIVEIEILATCDHPYIVKLLG 83
Query: 374 SFQTSTHICLITDFCPGGELFAL---LDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           ++     + ++ +FCPGG + A+   LD+       E   +    +++  L +LH   II
Sbjct: 84  AYYHDGKLWIMIEFCPGGAVDAIMLELDRG----LTEPQIQVVCRQMLEALNFLHSKRII 139
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDLK  N+L+  +G + L DF +S
Sbjct: 140 HRDLKAGNVLMTLEGDIRLADFGVS 164

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+  + +  G L A K +E     +  ++    +E EI++  DHP++  L  
Sbjct: 19  LGDGAFGKVYKAKNKETGALAAAKVIETK---SEEELEDYIVEIEILATCDHPYIVKLLG 75
Query: 374 SFQTSTHICLITDFCPGGELFAL---LDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           ++     + ++ +FCPGG + A+   LD+       E   +    +++  L +LH   II
Sbjct: 76  AYYHDGKLWIMIEFCPGGAVDAIMLELDRG----LTEPQIQVVCRQMLEALNFLHSKRII 131
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDLK  N+L+  +G + L DF +S
Sbjct: 132 HRDLKAGNVLMTLEGDIRLADFGVS 156

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 67
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 68  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 125
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAAGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEK-SVMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + H  + T
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH   I 
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIA 137
Query: 431 YRDLKPENILLQKDG----HVVLTDFDLS 455
           + DLKPENI+L        H+ L DF L+
Sbjct: 138 HFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEK-SVMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + H  + T
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH   I 
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIA 137
Query: 431 YRDLKPENILLQKDG----HVVLTDFDLS 455
           + DLKPENI+L        H+ L DF L+
Sbjct: 138 HFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 67
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 68  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 125
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 67
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 68  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 125
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 67
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 68  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 125
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 10  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 65
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 66  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 123
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 124 ITHRDIKPENLLLDERDNLKISDFGLA 150

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEK-SVMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + H  + T
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH   I 
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIA 137
Query: 431 YRDLKPENILLQKDG----HVVLTDFDLS 455
           + DLKPENI+L        H+ L DF L+
Sbjct: 138 HFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           +PLG G  G+V+L   + +  + A+K + KS +      H+   E EI + L HP +  L
Sbjct: 29  RPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHHPNILRL 88
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y  F     I LI ++ P GEL+  L K     F E        E+   L Y H   +I+
Sbjct: 89  YNYFYDRRRIYLILEYAPRGELYKELQKS--CTFDEQRTATIMEELADALMYCHGKKVIH 146
Query: 432 RDLKPENILLQKDGHVVLTDFDLS 455
           RD+KPEN+LL   G + + DF  S
Sbjct: 147 RDIKPENLLLGLKGELKIADFGWS 170

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEK-SVMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + H  + T
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH   I 
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIA 137
Query: 431 YRDLKPENILLQKDG----HVVLTDFDLS 455
           + DLKPENI+L        H+ L DF L+
Sbjct: 138 HFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEK-SVMLNRNKVHRACIERE--IMSLLDHPFLPT 370
           LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  + H  + T
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH   I 
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIA 137
Query: 431 YRDLKPENILLQKDG----HVVLTDFDLS 455
           + DLKPENI+L        H+ L DF L+
Sbjct: 138 HFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 67
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 68  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 125
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
           ++  ++ LG G  G VH    +  G ++  K +     L++  V     E  IM+ L HP
Sbjct: 52  YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKN---EISIMNQLHHP 108
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            L  L+ +F+    + LI +F  GGELF  +  +  K+  E     Y  +   GL+++H 
Sbjct: 109 KLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKM-SEAEVINYMRQACEGLKHMHE 167
Query: 427 LGIIYRDLKPENILLQ--KDGHVVLTDFDLS 455
             I++ D+KPENI+ +  K   V + DF L+
Sbjct: 168 HSIVHLDIKPENIMCETKKASSVKIIDFGLA 198

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 66
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 124
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI +    +L+H  +
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK----MLNHENV 67
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 68  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 125
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++ LG G  G V L   +   E  A+K   M+++V    N     CI     ++L+H  +
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN----AMLNHENV 67
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
              Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH +G
Sbjct: 68  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHGIG 125
Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
           I +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  ++ LG G  GSV+    +  G++ A+K +        + +     E  IM   D P 
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE-----SDLQEIIKEISIMQQCDSPH 85
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +   Y S+  +T + ++ ++C  G +  ++ +   K   ED         + GLEYLH +
Sbjct: 86  VVKYYGSYFKNTDLWIVMEYCGAGSVSDII-RLRNKTLTEDEIATILQSTLKGLEYLHFM 144
Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
             I+RD+K  NILL  +GH  L DF ++
Sbjct: 145 RKIHRDIKAGNILLNTEGHAKLADFGVA 172

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLP 369
           + LG G  G VHLVE + +G    +K + K    +R++V    IE EI  L  LDHP + 
Sbjct: 28  RKLGSGAFGDVHLVEERSSGLERVIKTINK----DRSQVPMEQIEAEIEVLKSLDHPNII 83
Query: 370 TLYASFQTSTHICLITDFCPGGELFA-LLDKQPM-KIFREDSARFYAAEVVIGLEYLHCL 427
            ++  F+   ++ ++ + C GGEL   ++  Q   K   E        +++  L Y H  
Sbjct: 84  KIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ 143
Query: 428 GIIYRDLKPENILLQ 442
            ++++DLKPENIL Q
Sbjct: 144 HVVHKDLKPENILFQ 158

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTL 371
           +G G TG V +  ++ +G+L A+K M+      R +  R  +  E++ + D  H  +  +
Sbjct: 159 IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 213
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y S+     + ++ +F  GG L  ++    M    E+        V+  L  LH  G+I+
Sbjct: 214 YNSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EEQIAAVCLAVLQALSVLHAQGVIH 270
Query: 432 RDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP 489
           RD+K ++ILL  DG V L+DF   F      +V     + G  + M   L     Y P
Sbjct: 271 RDIKSDSILLTHDGRVKLSDF--GFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGP 326

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 80/149 (53%), Gaps = 12/149 (8%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIM--SLLDHP 366
           ++ LG G  G V L   +   E  A+K   M+++V    N      I++EI    +L+H 
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPEN------IKKEIXINKMLNHE 64
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +   Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHG 122
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +GI +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 80/149 (53%), Gaps = 12/149 (8%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIM--SLLDHP 366
           ++ LG G  G V L   +   E  A+K   M+++V    N      I++EI    +L+H 
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPEN------IKKEIXINKMLNHE 65
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +   Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHG 123
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +GI +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 330 AGELYAMKAMEKSVMLNRN--KVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF 387
           AG+ YA K +    +  R+  K+ R   E  I  LL HP +  L+ S     H  LI D 
Sbjct: 46  AGQEYAAKIINTKKLSARDHQKLER---EARICRLLKHPNIVRLHDSISEEGHHYLIFDL 102
Query: 388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KD 444
             GGELF   D    + + E  A     +++  + + H +G+++RDLKPEN+LL    K 
Sbjct: 103 VTGGELFE--DIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKG 160
Query: 445 GHVVLTDFDLSFMTSCKPQVFY 466
             V L DF L+     + Q ++
Sbjct: 161 AAVKLADFGLAIEVEGEQQAWF 182

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 80/149 (53%), Gaps = 12/149 (8%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIM--SLLDHP 366
           ++ LG G  G V L   +   E  A+K   M+++V    N      I++EI    +L+H 
Sbjct: 11  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPEN------IKKEIXINKMLNHE 64
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +   Y   +      L  ++C GGELF  ++   + +   D+ RF+  +++ G+ YLH 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFH-QLMAGVVYLHG 122
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +GI +RD+KPEN+LL +  ++ ++DF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTL 371
           +G G TG V +  ++ +G+L A+K M+      R +  R  +  E++ + D  H  +  +
Sbjct: 39  IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 93
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y S+     + ++ +F  GG L  ++    M    E+        V+  L  LH  G+I+
Sbjct: 94  YNSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EEQIAAVCLAVLQALSVLHAQGVIH 150
Query: 432 RDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP 489
           RD+K ++ILL  DG V L+DF   F      +V     + G  + M   L     Y P
Sbjct: 151 RDIKSDSILLTHDGRVKLSDF--GFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGP 206

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTL 371
           +G G TG V +  ++ +G+L A+K M+      R +  R  +  E++ + D  H  +  +
Sbjct: 37  IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 91
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y S+     + ++ +F  GG L  ++    M    E+        V+  L  LH  G+I+
Sbjct: 92  YNSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EEQIAAVCLAVLQALSVLHAQGVIH 148
Query: 432 RDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP 489
           RD+K ++ILL  DG V L+DF   F      +V     + G  + M   L     Y P
Sbjct: 149 RDIKSDSILLTHDGRVKLSDF--GFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGP 204

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTL 371
           +G G TG V +  ++ +G+L A+K M+      R +  R  +  E++ + D  H  +  +
Sbjct: 82  IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 136
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y S+     + ++ +F  GG L  ++    M    E+        V+  L  LH  G+I+
Sbjct: 137 YNSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EEQIAAVCLAVLQALSVLHAQGVIH 193
Query: 432 RDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP 489
           RD+K ++ILL  DG V L+DF   F      +V     + G  + M   L     Y P
Sbjct: 194 RDIKSDSILLTHDGRVKLSDF--GFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGP 249

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           I  LG G  G V+  + +    L A K ++     +  ++    +E +I++  DHP +  
Sbjct: 42  IGELGDGAFGKVYKAQNKETSVLAAAKVIDTK---SEEELEDYMVEIDILASCDHPNIVK 98
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L  +F    ++ ++ +FC GG + A++  +  +   E   +    + +  L YLH   II
Sbjct: 99  LLDAFYYENNLWILIEFCAGGAVDAVM-LELERPLTESQIQVVCKQTLDALNYLHDNKII 157
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDLK  NIL   DG + L DF +S
Sbjct: 158 HRDLKAGNILFTLDGDIKLADFGVS 182

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           I  LG G  G V+  + +    L A K ++     +  ++    +E +I++  DHP +  
Sbjct: 42  IGELGDGAFGKVYKAQNKETSVLAAAKVIDTK---SEEELEDYMVEIDILASCDHPNIVK 98
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L  +F    ++ ++ +FC GG + A++  +  +   E   +    + +  L YLH   II
Sbjct: 99  LLDAFYYENNLWILIEFCAGGAVDAVM-LELERPLTESQIQVVCKQTLDALNYLHDNKII 157
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDLK  NIL   DG + L DF +S
Sbjct: 158 HRDLKAGNILFTLDGDIKLADFGVS 182

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           I  LG G  G V+  + +    L A K ++     +  ++    +E +I++  DHP +  
Sbjct: 42  IGELGDGAFGKVYKAQNKETSVLAAAKVIDTK---SEEELEDYMVEIDILASCDHPNIVK 98
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L  +F    ++ ++ +FC GG + A++  +  +   E   +    + +  L YLH   II
Sbjct: 99  LLDAFYYENNLWILIEFCAGGAVDAVM-LELERPLTESQIQVVCKQTLDALNYLHDNKII 157
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDLK  NIL   DG + L DF +S
Sbjct: 158 HRDLKAGNILFTLDGDIKLADFGVS 182

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTL 371
           +G G TG V +  ++ +G+L A+K M+      R +  R  +  E++ + D  H  +  +
Sbjct: 28  IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 82
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y S+     + ++ +F  GG L  ++    M    E+        V+  L  LH  G+I+
Sbjct: 83  YNSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EEQIAAVCLAVLQALSVLHAQGVIH 139
Query: 432 RDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP 489
           RD+K ++ILL  DG V L+DF   F      +V     + G  + M   L     Y P
Sbjct: 140 RDIKSDSILLTHDGRVKLSDF--GFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGP 195

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTL 371
           +G G TG V +  ++ +G+L A+K M+      R +  R  +  E++ + D  H  +  +
Sbjct: 32  IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 86
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y S+     + ++ +F  GG L  ++    M    E+        V+  L  LH  G+I+
Sbjct: 87  YNSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EEQIAAVCLAVLQALSVLHAQGVIH 143
Query: 432 RDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYVP 489
           RD+K ++ILL  DG V L+DF   F      +V     + G  + M   L     Y P
Sbjct: 144 RDIKSDSILLTHDGRVKLSDF--GFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGP 199

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV-MLNRNKVH--RACIERE---IMS 361
           + P   +G G +  V     +  G  +A+K ME +   L+  ++   R    RE   +  
Sbjct: 96  YDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQ 155
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           +  HP + TL  S+++S+ + L+ D    GELF  L ++      E   R     ++  +
Sbjct: 156 VAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAV 213
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +LH   I++RDLKPENILL  +  + L+DF  S
Sbjct: 214 SFLHANNIVHRDLKPENILLDDNMQIRLSDFGFS 247

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 85/220 (38%), Gaps = 59/220 (26%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVM--LNRNKVHRACIEREIMSLLDHPFLPTL 371
           +G G  G V +        + A+K M K+ +  +N   V R   E  +M  L HP +  L
Sbjct: 34  IGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARL 93
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV------------- 418
           Y  ++   +ICL+ + C GG    LLDK  + +F +DS    A +VV             
Sbjct: 94  YEVYEDEQYICLVMELCHGGH---LLDK--LNVFIDDSTGKCAMDVVKTQICPCPECNEE 148
Query: 419 ------------------------------IGLEYLHCLGIIYRDLKPENILL--QKDGH 446
                                           L YLH  GI +RD+KPEN L    K   
Sbjct: 149 AINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFE 208
Query: 447 VVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFT 486
           + L DF LS       + FY  +   +Y +  K  T YF 
Sbjct: 209 IKLVDFGLS-------KEFYKLNNGEYYGMTTKAGTPYFV 241

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G       +      E++A K + KS++L  ++  +  +E  I   L H  +   + 
Sbjct: 29  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 88
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+ +  + ++ + C    L  L  ++  K   E  AR+Y  ++V+G +YLH   +I+RD
Sbjct: 89  FFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRD 146
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L +D  V + DF L+
Sbjct: 147 LKLGNLFLNEDLEVKIGDFGLA 168

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G       +      E++A K + KS++L  ++  +  +E  I   L H  +   + 
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 108
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+ +  + ++ + C    L  L  ++  K   E  AR+Y  ++V+G +YLH   +I+RD
Sbjct: 109 FFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRD 166
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L +D  V + DF L+
Sbjct: 167 LKLGNLFLNEDLEVKIGDFGLA 188

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G       +      E++A K + KS++L  ++  +  +E  I   L H  +   + 
Sbjct: 47  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 106
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+ +  + ++ + C    L  L  ++  K   E  AR+Y  ++V+G +YLH   +I+RD
Sbjct: 107 FFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRD 164
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L +D  V + DF L+
Sbjct: 165 LKLGNLFLNEDLEVKIGDFGLA 186

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G       +      E++A K + KS++L  ++  +  +E  I   L H  +   + 
Sbjct: 25  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 84
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+ +  + ++ + C    L  L  ++  K   E  AR+Y  ++V+G +YLH   +I+RD
Sbjct: 85  FFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRD 142
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L +D  V + DF L+
Sbjct: 143 LKLGNLFLNEDLEVKIGDFGLA 164

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G       +      E++A K + KS++L  ++  +  +E  I   L H  +   + 
Sbjct: 25  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 84
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+ +  + ++ + C    L  L  ++  K   E  AR+Y  ++V+G +YLH   +I+RD
Sbjct: 85  FFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRD 142
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L +D  V + DF L+
Sbjct: 143 LKLGNLFLNEDLEVKIGDFGLA 164

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G       +      E++A K + KS++L  ++  +  +E  I   L H  +   + 
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 82
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+ +  + ++ + C    L  L  ++  K   E  AR+Y  ++V+G +YLH   +I+RD
Sbjct: 83  FFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRD 140
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L +D  V + DF L+
Sbjct: 141 LKLGNLFLNEDLEVKIGDFGLA 162

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G     + +      E++A K + KS++L  ++  +   E  I   LD+P +   + 
Sbjct: 34  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 93
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+    + ++ + C    L  L  ++  K   E  AR++  + + G++YLH   +I+RD
Sbjct: 94  FFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNRVIHRD 151
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L  D  V + DF L+
Sbjct: 152 LKLGNLFLNDDMDVKIGDFGLA 173

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G     + +      E++A K + KS++L  ++  +   E  I   LD+P +   + 
Sbjct: 50  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 109
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+    + ++ + C    L  L  ++  K   E  AR++  + + G++YLH   +I+RD
Sbjct: 110 FFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNRVIHRD 167
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L  D  V + DF L+
Sbjct: 168 LKLGNLFLNDDMDVKIGDFGLA 189

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G     + +      E++A K + KS++L  ++  +   E  I   LD+P +   + 
Sbjct: 50  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 109
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+    + ++ + C    L  L  ++  K   E  AR++  + + G++YLH   +I+RD
Sbjct: 110 FFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNRVIHRD 167
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L  D  V + DF L+
Sbjct: 168 LKLGNLFLNDDMDVKIGDFGLA 189

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G     + +      E++A K + KS++L  ++  +   E  I   LD+P +   + 
Sbjct: 50  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 109
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
            F+    + ++ + C    L  L  ++  K   E  AR++  + + G++YLH   +I+RD
Sbjct: 110 FFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNRVIHRD 167
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LK  N+ L  D  V + DF L+
Sbjct: 168 LKLGNLFLNDDMDVKIGDFGLA 189

>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik) Length = 356

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTL 371
           LG G  G VH +E +  G   A+K +       R +V RA    E+M+   L  P +  L
Sbjct: 82  LGRGSFGEVHRMEDKQTGFQCAVKKV-------RLEVFRA---EELMACAGLTSPRIVPL 131
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y + +    + +  +   GG L  L+ +Q      ED A +Y  + + GLEYLH   I++
Sbjct: 132 YGAVREGPWVNIFMELLEGGSLGQLVKEQ--GCLPEDRALYYLGQALEGLEYLHSRRILH 189
Query: 432 RDLKPENILLQKDG-HVVLTDF 452
            D+K +N+LL  DG H  L DF
Sbjct: 190 GDVKADNVLLSSDGSHAALCDF 211

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 16/155 (10%)
Query: 320 GSVHLVELQGA-----GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYAS 374
           G     ++QGA     G+ YA+K +EK    +R++V R      +     +  +  L   
Sbjct: 22  GEGAYAKVQGAVSLQNGKEYAVKIIEKQAGHSRSRVFREV--ETLYQCQGNKNILELIEF 79
Query: 375 FQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDL 434
           F+  T   L+ +   GG + A + KQ  K F E  A     +V   L++LH  GI +RDL
Sbjct: 80  FEDDTRFYLVFEKLQGGSILAHIQKQ--KHFNEREASRVVRDVAAALDFLHTKGIAHRDL 137
Query: 435 KPENILL---QKDGHVVLTDFDLS----FMTSCKP 462
           KPENIL    +K   V + DFDL        SC P
Sbjct: 138 KPENILCESPEKVSPVKICDFDLGSGMKLNNSCTP 172

>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik) Length = 371

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTL 371
           LG G  G VH +E +  G   A+K +       R +V RA    E+M+   L  P +  L
Sbjct: 101 LGRGSFGEVHRMEDKQTGFQCAVKKV-------RLEVFRA---EELMACAGLTSPRIVPL 150
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y + +    + +  +   GG L  L+ +Q      ED A +Y  + + GLEYLH   I++
Sbjct: 151 YGAVREGPWVNIFMELLEGGSLGQLVKEQ--GCLPEDRALYYLGQALEGLEYLHSRRILH 208
Query: 432 RDLKPENILLQKDG-HVVLTDF 452
            D+K +N+LL  DG H  L DF
Sbjct: 209 GDVKADNVLLSSDGSHAALCDF 230

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFL 368
           KPLG G          + + + +A+K + K +  N         ++EI +L     HP +
Sbjct: 17  KPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEAN--------TQKEITALKLCEGHPNI 68
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
             L+  F    H  L+ +   GGELF  + K+  K F E  A +   ++V  + ++H +G
Sbjct: 69  VKLHEVFHDQLHTFLVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHDVG 126
Query: 429 IIYRDLKPENILL 441
           +++RDLKPEN+L 
Sbjct: 127 VVHRDLKPENLLF 139

>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G T +V     +  G+L+A+K       L    V     E E++  L+H  +  L+A
Sbjct: 17  LGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMR--EFEVLKKLNHKNIVKLFA 74
Query: 374 SFQTST--HICLITDFCPGGELFALLDKQPMKIFREDSARFYAA--EVVIGLEYLHCLGI 429
             + +T  H  LI +FCP G L+ +L+ +P   +    + F     +VV G+ +L   GI
Sbjct: 75  IEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRDVVGGMNHLRENGI 133
Query: 430 IYRDLKPENIL--LQKDGHVV--LTDF 452
           ++R++KP NI+  + +DG  V  LTDF
Sbjct: 134 VHRNIKPGNIMRVIGEDGQSVYKLTDF 160

>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase Domain Phosphorylated On Ser172 Length = 319

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G T +V     +  G+L+A+K       L    V     E E++  L+H  +  L+A
Sbjct: 17  LGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMR--EFEVLKKLNHKNIVKLFA 74
Query: 374 SFQTST--HICLITDFCPGGELFALLDKQPMKIFREDSARFYAA--EVVIGLEYLHCLGI 429
             + +T  H  LI +FCP G L+ +L+ +P   +    + F     +VV G+ +L   GI
Sbjct: 75  IEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRDVVGGMNHLRENGI 133
Query: 430 IYRDLKPENIL--LQKDGHVV--LTDF 452
           ++R++KP NI+  + +DG  V  LTDF
Sbjct: 134 VHRNIKPGNIMRVIGEDGQSVYKLTDF 160

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 330 AGELYAMKAMEKSVMLNRN--KVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF 387
           AG+ YA   +    +  R+  K+ R   E  I  LL HP +  L+ S     H  LI D 
Sbjct: 35  AGQEYAAMIINTKKLSARDHQKLER---EARICRLLKHPNIVRLHDSISEEGHHYLIFDL 91
Query: 388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KD 444
             GGELF   D    + + E  A     +++  + + H +G+++R+LKPEN+LL    K 
Sbjct: 92  VTGGELFE--DIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKG 149
Query: 445 GHVVLTDFDLSFMTSCKPQVFY 466
             V L DF L+     + Q ++
Sbjct: 150 AAVKLADFGLAIEVEGEQQAWF 171

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL---LDHPFL 368
           K LG G    V     +  G+ YA K ++K     R +  RA I  EI  L      P +
Sbjct: 35  KELGRGKFAVVRQCISKSTGQEYAAKFLKKR---RRGQDCRAEILHEIAVLELAKSCPRV 91
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
             L+  ++ ++ I LI ++  GGE+F+L   +  ++  E+       +++ G+ YLH   
Sbjct: 92  INLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNN 151
Query: 429 IIYRDLKPENILLQKD---GHVVLTDFDLS 455
           I++ DLKP+NILL      G + + DF +S
Sbjct: 152 IVHLDLKPQNILLSSIYPLGDIKIVDFGMS 181

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  ++S  D P++   Y S+   T + +I ++  GG    LL+  P+    E        
Sbjct: 55  EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLD---ETQIATILR 111
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E++ GL+YLH    I+RD+K  N+LL + G V L DF ++
Sbjct: 112 EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA 151

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHP 366
           K LG G  G V L   +   +  A+K + K           +       E EI+  L+HP
Sbjct: 16  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 75
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  +   F    +  ++ +   GGELF  +     K  +E + + Y  ++++ ++YLH 
Sbjct: 76  CIIKIKNFFDAEDYY-IVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHE 132
Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDF-------DLSFM-------TSCKPQVFYHAH 469
            GII+RDLKPEN+LL   ++D  + +TDF       + S M       T   P+V     
Sbjct: 133 NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVG 192
Query: 470 VNGFYFIMYKWLTGYFTYV 488
             G+   +  W  G   ++
Sbjct: 193 TAGYNRAVDCWSLGVILFI 211

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  ++S  D P++   Y S+   T + +I ++  GG    LL+  P+    E        
Sbjct: 70  EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLD---ETQIATILR 126
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E++ GL+YLH    I+RD+K  N+LL + G V L DF ++
Sbjct: 127 EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA 166

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  ++S  D P++   Y S+   T + +I ++  GG    LL+  P+    E        
Sbjct: 55  EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLD---ETQIATILR 111
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E++ GL+YLH    I+RD+K  N+LL + G V L DF ++
Sbjct: 112 EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA 151

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK------IFREDS 409
           E + MS   HP + + Y SF     + L+     GG +  ++     K      +  E +
Sbjct: 63  EIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDEST 122
Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                 EV+ GLEYLH  G I+RD+K  NILL +DG V + DF +S
Sbjct: 123 IATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVS 168

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK------IFREDS 409
           E + MS   HP + + Y SF     + L+     GG +  ++     K      +  E +
Sbjct: 58  EIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDEST 117
Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                 EV+ GLEYLH  G I+RD+K  NILL +DG V + DF +S
Sbjct: 118 IATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVS 163

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHP 366
           K LG G  G V L   +   +  A+K + K           +       E EI+  L+HP
Sbjct: 15  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 74
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  +   F    +  ++ +   GGELF  +     K  +E + + Y  ++++ ++YLH 
Sbjct: 75  CIIKIKNFFDAEDYY-IVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHE 131
Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDF-------DLSFM-------TSCKPQVFYHAH 469
            GII+RDLKPEN+LL   ++D  + +TDF       + S M       T   P+V     
Sbjct: 132 NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVG 191
Query: 470 VNGFYFIMYKWLTGYFTYV 488
             G+   +  W  G   ++
Sbjct: 192 TAGYNRAVDCWSLGVILFI 210

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHP 366
           K LG G  G V L   +   +  A+K + K           +       E EI+  L+HP
Sbjct: 16  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 75
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  +   F    +  ++ +   GGELF  +     K  +E + + Y  ++++ ++YLH 
Sbjct: 76  CIIKIKNFFDAEDYY-IVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHE 132
Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDF-------DLSFM-------TSCKPQVFYHAH 469
            GII+RDLKPEN+LL   ++D  + +TDF       + S M       T   P+V     
Sbjct: 133 NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVG 192
Query: 470 VNGFYFIMYKWLTGYFTYV 488
             G+   +  W  G   ++
Sbjct: 193 TAGYNRAVDCWSLGVILFI 211

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHP 366
           K LG G  G V L   +   +  A+K + K           +       E EI+  L+HP
Sbjct: 16  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 75
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  +   F    +  ++ +   GGELF  +     K  +E + + Y  ++++ ++YLH 
Sbjct: 76  CIIKIKNFFDAEDYY-IVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHE 132
Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDF-------DLSFM-------TSCKPQVFYHAH 469
            GII+RDLKPEN+LL   ++D  + +TDF       + S M       T   P+V     
Sbjct: 133 NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVG 192
Query: 470 VNGFYFIMYKWLTGYFTYV 488
             G+   +  W  G   ++
Sbjct: 193 TAGYNRAVDCWSLGVILFI 211

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTL 371
           +G G TG V +   +  G+  A+K M+      R +  R  +  E++ + D  H  +  +
Sbjct: 53  IGEGSTGIVCIATEKHTGKQVAVKKMDL-----RKQQRRELLFNEVVIMRDYHHDNVVDM 107
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y+S+     + ++ +F  GG L  ++    M    E+        V+  L YLH  G+I+
Sbjct: 108 YSSYLVGDELWVVMEFLEGGALTDIVTHTRMN---EEQIATVCLSVLRALSYLHNQGVIH 164
Query: 432 RDLKPENILLQKDGHVVLTDFDLSFMTS 459
           RD+K ++ILL  DG + L+DF      S
Sbjct: 165 RDIKSDSILLTSDGRIKLSDFGFCAQVS 192

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHP 366
           K LG G  G V L   +   +  A+K + K           +       E EI+  L+HP
Sbjct: 22  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 81
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  +   F    +  ++ +   GGELF  +     K  +E + + Y  ++++ ++YLH 
Sbjct: 82  CIIKIKNFFDAEDYY-IVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHE 138
Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDF-------DLSFM-------TSCKPQVFYHAH 469
            GII+RDLKPEN+LL   ++D  + +TDF       + S M       T   P+V     
Sbjct: 139 NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVG 198
Query: 470 VNGFYFIMYKWLTGYFTYV 488
             G+   +  W  G   ++
Sbjct: 199 TAGYNRAVDCWSLGVILFI 217

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 321 SVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH 380
           +V ++++ G G   A +  E    L    +    I R++     HP +  L  +++T+T 
Sbjct: 46  AVKIIDVTGGGSFSAEEVQE----LREATLKEVDILRKVSG---HPNIIQLKDTYETNTF 98
Query: 381 ICLITDFCPGGELF-------ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
             L+ D    GELF        L +K+  KI R         EV+  L   H L I++RD
Sbjct: 99  FFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRA------LLEVICAL---HKLNIVHRD 149
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LKPENILL  D ++ LTDF  S
Sbjct: 150 LKPENILLDDDMNIKLTDFGFS 171

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 321 SVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH 380
           +V ++++ G G   A +  E    L    +    I R++     HP +  L  +++T+T 
Sbjct: 33  AVKIIDVTGGGSFSAEEVQE----LREATLKEVDILRKVSG---HPNIIQLKDTYETNTF 85
Query: 381 ICLITDFCPGGELF-------ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
             L+ D    GELF        L +K+  KI R         EV+  L   H L I++RD
Sbjct: 86  FFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRA------LLEVICAL---HKLNIVHRD 136
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LKPENILL  D ++ LTDF  S
Sbjct: 137 LKPENILLDDDMNIKLTDFGFS 158

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 321 SVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH 380
           +V ++++ G G   A +  E    L    +    I R++     HP +  L  +++T+T 
Sbjct: 46  AVKIIDVTGGGSFSAEEVQE----LREATLKEVDILRKVSG---HPNIIQLKDTYETNTF 98
Query: 381 ICLITDFCPGGELF-------ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
             L+ D    GELF        L +K+  KI R         EV+  L   H L I++RD
Sbjct: 99  FFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRA------LLEVICAL---HKLNIVHRD 149
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           LKPENILL  D ++ LTDF  S
Sbjct: 150 LKPENILLDDDMNIKLTDFGFS 171

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  ++S  D P++   Y S+   T + +I ++  GG    LL+  P+    E        
Sbjct: 75  EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLD---ETQIATILR 131
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E++ GL+YLH    I+RD+K  N+LL + G V L DF ++
Sbjct: 132 EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA 171

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  ++S  D P++   + S+  ST + +I ++  GG    LL   P++   E        
Sbjct: 67  EITVLSQCDSPYITRYFGSYLKSTKLWIIMEYLGGGSALDLLKPGPLE---ETYIATILR 123
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E++ GL+YLH    I+RD+K  N+LL + G V L DF ++
Sbjct: 124 EILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVA 163

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTL 371
           +G G TG V L   + +G   A+K M+      R +  R  +  E++ + D  H  +  +
Sbjct: 53  IGEGSTGIVCLAREKHSGRQVAVKMMDL-----RKQQRRELLFNEVVIMRDYQHFNVVEM 107
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           Y S+     + ++ +F  GG   AL D        E+        V+  L YLH  G+I+
Sbjct: 108 YKSYLVGEELWVLMEFLQGG---ALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIH 164
Query: 432 RDLKPENILLQKDGHVVLTDF 452
           RD+K ++ILL  DG V L+DF
Sbjct: 165 RDIKSDSILLTLDGRVKLSDF 185

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 331 GELYAMKAMEKSVMLNRN--KVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFC 388
           G+ YA K +    +  R+  K+ R   E  I  LL HP +  L+ S        L+ D  
Sbjct: 29  GQEYAAKIINTKKLSARDHQKLER---EARICRLLKHPNIVRLHDSISEEGFHYLVFDLV 85
Query: 389 PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDG 445
            GGELF   D    + + E  A     +++  + + H  GI++RDLKPEN+LL    K  
Sbjct: 86  TGGELFE--DIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGA 143
Query: 446 HVVLTDFDLSFMTSCKPQVFY 466
            V L DF L+       Q ++
Sbjct: 144 AVKLADFGLAIEVQGDQQAWF 164

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHP 366
           K LG G  G V L   +   +  A++ + K           +       E EI+  L+HP
Sbjct: 141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHP 200
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  +   F    +  ++ +   GGELF  +     K  +E + + Y  ++++ ++YLH 
Sbjct: 201 CIIKIKNFFDAEDYY-IVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHE 257
Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDF-------DLSFM-------TSCKPQVFYHAH 469
            GII+RDLKPEN+LL   ++D  + +TDF       + S M       T   P+V     
Sbjct: 258 NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVG 317
Query: 470 VNGFYFIMYKWLTGYFTYV 488
             G+   +  W  G   ++
Sbjct: 318 TAGYNRAVDCWSLGVILFI 336

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHP 366
           K LG G  G V L   +   +  A++ + K           +       E EI+  L+HP
Sbjct: 155 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHP 214
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  +   F    +  ++ +   GGELF  +     K  +E + + Y  ++++ ++YLH 
Sbjct: 215 CIIKIKNFFDAEDYY-IVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHE 271
Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDF-------DLSFM-------TSCKPQVFYHAH 469
            GII+RDLKPEN+LL   ++D  + +TDF       + S M       T   P+V     
Sbjct: 272 NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVG 331
Query: 470 VNGFYFIMYKWLTGYFTYV 488
             G+   +  W  G   ++
Sbjct: 332 TAGYNRAVDCWSLGVILFI 350

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 334 YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL 393
           YA+K ++KS    R+      I   ++    HP + TL   +    H+ L+T+   GGEL
Sbjct: 55  YAVKVIDKS---KRDPSEEIEI---LLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGEL 108
Query: 394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENIL 440
              + +Q  K F E  A F    +   +EYLH  G+++RDLKP NIL
Sbjct: 109 LDKILRQ--KFFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNIL 153

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 334 YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL 393
           YA+K ++KS    R+      I   ++    HP + TL   +    H+ L+T+   GGEL
Sbjct: 55  YAVKVIDKS---KRDPSEEIEI---LLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGEL 108
Query: 394 FALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENIL 440
              + +Q  K F E  A F    +   +EYLH  G+++RDLKP NIL
Sbjct: 109 LDKILRQ--KFFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNIL 153

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 331 GELYAMKAMEKSVMLNRN--KVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFC 388
           G+ YA K +    +  R+  K+ R   E  I  LL HP +  L+ S        L+ D  
Sbjct: 29  GQEYAAKIINTKKLSARDHQKLER---EARICRLLKHPNIVRLHDSISEEGFHYLVFDLV 85
Query: 389 PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDG 445
            GGELF   D    + + E  A     +++  + + H  GI++RDLKPEN+LL    K  
Sbjct: 86  TGGELFE--DIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGA 143
Query: 446 HVVLTDFDLSFMTSCKPQVFY 466
            V L DF L+       Q ++
Sbjct: 144 AVKLADFGLAIEVQGDQQAWF 164

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  G+VH  E  G+ ++     ME+     R  V+    E  IM  L HP +     
Sbjct: 45  IGAGSFGTVHRAEWHGS-DVAVKILMEQDFHAER--VNEFLREVAIMKRLRHPNIVLFMG 101
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA-EVVIGLEYLHCLG--II 430
           +     ++ ++T++   G L+ LL K   +   ++  R   A +V  G+ YLH     I+
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIV 161
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           +RDLK  N+L+ K   V + DF LS + +
Sbjct: 162 HRDLKSPNLLVDKKYTVKVCDFGLSRLKA 190

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 355 IERE--IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
           +ERE  I   L HP +  L+ S Q  +   L+ D   GGELF   D    + + E  A  
Sbjct: 75  LEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFE--DIVAREFYSEADASH 132
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDGHVVLTDFDLSF 456
              +++  + Y H  GI++R+LKPEN+LL    K   V L DF L+ 
Sbjct: 133 CIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 179

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL----- 368
           LG G  G V     Q  GE  A+K   +   L+     R C+E +IM  L+HP +     
Sbjct: 23  LGTGGFGYVLRWIHQDTGEQVAIKQCRQE--LSPKNRERWCLEIQIMKKLNHPNVVSARE 80
Query: 369 -PTLYASFQTSTHICLITDFCPGGELFALLDK-QPMKIFREDSARFYAAEVVIGLEYLHC 426
            P        +    L  ++C GG+L   L++ +     +E   R   +++   L YLH 
Sbjct: 81  VPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE 140
Query: 427 LGIIYRDLKPENILLQ 442
             II+RDLKPENI+LQ
Sbjct: 141 NRIIHRDLKPENIVLQ 156

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL----- 368
           LG G  G V     Q  GE  A+K   +   L+     R C+E +IM  L+HP +     
Sbjct: 22  LGTGGFGYVLRWIHQDTGEQVAIKQCRQE--LSPKNRERWCLEIQIMKKLNHPNVVSARE 79
Query: 369 -PTLYASFQTSTHICLITDFCPGGELFALLDK-QPMKIFREDSARFYAAEVVIGLEYLHC 426
            P        +    L  ++C GG+L   L++ +     +E   R   +++   L YLH 
Sbjct: 80  VPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE 139
Query: 427 LGIIYRDLKPENILLQ 442
             II+RDLKPENI+LQ
Sbjct: 140 NRIIHRDLKPENIVLQ 155

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 2/171 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           G+ +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L
Sbjct: 1   GMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKEL 59
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL +
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
            H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 169

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 2/175 (1%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           G  + + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  +
Sbjct: 1   GPLVDMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISL 59
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +  L+HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ 
Sbjct: 60  LKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQ 118
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           GL + H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 GLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 173

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           GE IG   F  +         ++ L++++   E   +KA ++ VM  R   H   +    
Sbjct: 38  GELIGKGRFGQVYHGRWHGEVAIRLIDIERDNE-DQLKAFKREVMAYRQTRHENVV---- 92
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
                         +  +  H+ +IT  C G  L++++    + +   +  R  A E+V 
Sbjct: 93  ----------LFMGACMSPPHLAIITSLCKGRTLYSVVRDAKI-VLDVNKTRQIAQEIVK 141
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           G+ YLH  GI+++DLK +N+    +G VV+TDF L
Sbjct: 142 GMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGL 175

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 15/157 (9%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--- 364
           F+ ++ +G G  G V+       G+L A+K M+ +            I++EI  L     
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT------GDEEEEIKQEINMLKKYSH 79
Query: 365 HPFLPTLYASF------QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           H  + T Y +F           + L+ +FC  G +  L+        +E+   +   E++
Sbjct: 80  HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREIL 139
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            GL +LH   +I+RD+K +N+LL ++  V L DF +S
Sbjct: 140 RGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 176

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 12/179 (6%)
Query: 282 PHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEK 341
           P   D+ + I+I        ++     +PI  LG G  G V  +    +G++ A+K +  
Sbjct: 30  PRDLDSKACISI---GNQNFEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRA 86
Query: 342 SVMLNRNKVHRACIEREI-MSLLDHPFLPTLYASF--QTSTHICL-ITDFCPGGELFALL 397
           +V  N  +  R  ++ +I M  +D PF  T Y +   +    IC+ + D         ++
Sbjct: 87  TV--NSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVI 144
Query: 398 DKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           DK   +   ED     A  +V  LE+LH  L +I+RD+KP N+L+   G V + DF +S
Sbjct: 145 DKG--QTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGIS 201

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-MSLLDHP 366
            +PI  LG G  G V  +    +G++ A+K +  +V  N  +  R  ++ +I M  +D P
Sbjct: 9   LEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATV--NSQEQKRLLMDLDISMRTVDCP 66
Query: 367 FLPTLYASF--QTSTHICL-ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           F  T Y +   +    IC+ + D         ++DK   +   ED     A  +V  LE+
Sbjct: 67  FTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKG--QTIPEDILGKIAVSIVKALEH 124
Query: 424 LHC-LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           LH  L +I+RD+KP N+L+   G V + DF +S
Sbjct: 125 LHSKLSVIHRDVKPSNVLINALGQVKMCDFGIS 157

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 63
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEFL-SMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKPEN+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 123 HSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 172

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 61
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFL-SMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKPEN+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 121 HSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 170

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           LG G   +V+    +   ++ A+K +      E    +NR     A  E +++  L HP 
Sbjct: 18  LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRT----ALREIKLLQELSHPN 73
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L  +F   ++I L+ DF        ++ K    +      + Y    + GLEYLH  
Sbjct: 74  IIGLLDAFGHKSNISLVFDFMETD--LEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH 131
Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
            I++RDLKP N+LL ++G + L DF L+       + + H  V  +Y
Sbjct: 132 WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVVTRWY 178

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN--KVHRACIEREIMSLLDHPFLPTL 371
           LG G    V     +  G  +A K +    +  R+  K+ R   E  I   L HP +  L
Sbjct: 14  LGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLER---EARICRKLQHPNIVRL 70
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           + S Q  +   L+ D   GGELF   D    + + E  A     +++  + Y H  GI++
Sbjct: 71  HDSIQEESFHYLVFDLVTGGELFE--DIVAREFYSEADASHCIQQILESIAYCHSNGIVH 128
Query: 432 RDLKPENILL---QKDGHVVLTDFDLSF 456
           R+LKPEN+LL    K   V L DF L+ 
Sbjct: 129 RNLKPENLLLASKAKGAAVKLADFGLAI 156

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN--KVHRACIEREIMSLLDHPFLPTL 371
           LG G    V     +  G  +A K +    +  R+  K+ R   E  I   L HP +  L
Sbjct: 13  LGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLER---EARICRKLQHPNIVRL 69
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           + S Q  +   L+ D   GGELF   D    + + E  A     +++  + Y H  GI++
Sbjct: 70  HDSIQEESFHYLVFDLVTGGELFE--DIVAREFYSEADASHCIQQILESIAYCHSNGIVH 127
Query: 432 RDLKPENILL---QKDGHVVLTDFDLSF 456
           R+LKPEN+LL    K   V L DF L+ 
Sbjct: 128 RNLKPENLLLASKAKGAAVKLADFGLAI 155

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN--KVHRACIEREIMSLLDHPFLPTL 371
           LG G    V     +  G  +A K +    +  R+  K+ R   E  I   L HP +  L
Sbjct: 14  LGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLER---EARICRKLQHPNIVRL 70
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           + S Q  +   L+ D   GGELF   D    + + E  A     +++  + Y H  GI++
Sbjct: 71  HDSIQEESFHYLVFDLVTGGELFE--DIVAREFYSEADASHCIQQILESIAYCHSNGIVH 128
Query: 432 RDLKPENILL---QKDGHVVLTDFDLSF 456
           R+LKPEN+LL    K   V L DF L+ 
Sbjct: 129 RNLKPENLLLASKAKGAAVKLADFGLAI 156

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 61
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKPEN+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 121 HSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 170

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 72  LFMGYSTKPQLAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKSII 130
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+ + S                   P+V         
Sbjct: 131 HRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY 190
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 191 SFQSDVYAFGIVLYELMTGQLPY 213

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 4   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 62
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 63  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKPEN+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 122 HSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 171

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  G+VH  E  G+ ++     ME+     R  V+    E  IM  L HP +     
Sbjct: 45  IGAGSFGTVHRAEWHGS-DVAVKILMEQDFHAER--VNEFLREVAIMKRLRHPNIVLFMG 101
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA-EVVIGLEYLHCLG--II 430
           +     ++ ++T++   G L+ LL K   +   ++  R   A +V  G+ YLH     I+
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIV 161
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           +R+LK  N+L+ K   V + DF LS + +
Sbjct: 162 HRNLKSPNLLVDKKYTVKVCDFGLSRLKA 190

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 16/198 (8%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-EREIMSLL 363
           L +F+  K +G G    V+       G   A+K ++   +++  K    CI E +++  L
Sbjct: 31  LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDA-KARADCIKEIDLLKQL 89
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLD--KQPMKIFREDSARFYAAEVVIGL 421
           +HP +   YASF     + ++ +    G+L  ++   K+  ++  E +   Y  ++   L
Sbjct: 90  NHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSAL 149
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV--------FYHA----H 469
           E++H   +++RD+KP N+ +   G V L D  L    S K           +Y +    H
Sbjct: 150 EHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH 209
Query: 470 VNGFYFIMYKWLTGYFTY 487
            NG+ F    W  G   Y
Sbjct: 210 ENGYNFKSDIWSLGCLLY 227

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G    V  +  GE+  MK +   +  +         E ++M  L+HP +     
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKEL---IRFDEETQRTFLKEVKVMRCLEHPNVLKFIG 74
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                  +  IT++  GG L  ++     +        F A ++  G+ YLH + II+RD
Sbjct: 75  VLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSF-AKDIASGMAYLHSMNIIHRD 133
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L++++ +VV+ DF L+
Sbjct: 134 LNSHNCLVRENKNVVVADFGLA 155

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V+ + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 18  FERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 74
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL-H 425
           ++   Y +F +   I +  +   GG L  +L K+  +I  E   +   A V+ GL YL  
Sbjct: 75  YIVGFYGAFYSDGEISICMEHMDGGSLDQVL-KEAKRIPEEILGKVSIA-VLRGLAYLRE 132
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I++RD+KP NIL+   G + L DF +S
Sbjct: 133 KHQIMHRDVKPSNILVNSRGEIKLCDFGVS 162

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKEL 59
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL +
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVFEFL-HQDLKDFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
            H   +++RDLKPEN+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 CHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 169

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T+  + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 84  LFMGYSTAPQLAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKSII 142
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+   S                   P+V         
Sbjct: 143 HRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY 202
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 203 SFQSDVYAFGIVLYELMTGQLPY 225

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  ++S  D  ++   Y S+   + + +I ++  GG    LL   P   F E        
Sbjct: 71  EITVLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGP---FDEFQIATMLK 127
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E++ GL+YLH    I+RD+K  N+LL + G V L DF ++
Sbjct: 128 EILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVA 167

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ I  LG G  G V           YA+K +  +      K+     E  +++ L+H +
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT----EEKLSTILSEVMLLASLNHQY 63
Query: 368 LPTLYASF-------------QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           +   YA++             +  + + +  ++C  G L+ L+  + +   R++  R + 
Sbjct: 64  VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFR 123
Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++  L Y+H  GII+RDLKP NI + +  +V + DF L+
Sbjct: 124 -QILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLA 163

>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3) Length = 350

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G VH ++ +  G   A+K +   V      V  AC      + L  P +  LY 
Sbjct: 80  LGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELV--AC------AGLSSPRIVPLYG 131
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           + +    + +  +   GG L  L+ +  M    ED A +Y  + + GLEYLH   I++ D
Sbjct: 132 AVREGPWVNIFMELLEGGSLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLHTRRILHGD 189
Query: 434 LKPENILLQKDG-HVVLTDF 452
           +K +N+LL  DG    L DF
Sbjct: 190 VKADNVLLSSDGSRAALCDF 209

>pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein Length = 162

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 43/168 (25%)
Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI 128
           L + ++      V+ +    D  +I+ + +F  LT Y+R+EIL ++C FL+  +      
Sbjct: 27  LQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDD------ 80
Query: 129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLI 188
                                                DQ   ++IR A+ E R     L 
Sbjct: 81  ------------------------------------RDQLGRARIRKAMAEGRPCREVLR 104
Query: 189 NYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSE 236
           NY K G  FWN   + P++    +  YFIG+Q D S  VE L   L+E
Sbjct: 105 NYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVE-LERELAE 151

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 63
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 172

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 84  LFMGYSTKPQLAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKSII 142
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+   S                   P+V         
Sbjct: 143 HRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY 202
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 203 SFQSDVYAFGIVLYELMTGQLPY 225

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 60
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 169

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM-LNRNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 27  FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 83
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 84  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 138
Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 139 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 171

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKEL 59
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL +
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
            H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 169

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 4   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 62
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 63  HPNIVKLLDVIHTENKLYLVFEFL-SMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 122 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 171

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 63
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEFL-SMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 172

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 60
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFC 119
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 169

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKEL 59
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL +
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
            H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 169

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKEL 59
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL +
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
            H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 169

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 4   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 62
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 63  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 122 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 171

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 60
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 169

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 6   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 64
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 65  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 123
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 124 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 173

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 61
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 121 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 170

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 63
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 172

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 59
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 60  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 168

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 63
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 172

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 4   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 62
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 63  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 122 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 171

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 59
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 60  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 168

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 61
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 121 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 170

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 9   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 67
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 68  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 127 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 176

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 60
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 169

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 70  FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 126
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 127 YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 181
Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 182 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 214

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 59
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 60  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 168

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 61
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 121 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 170

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 11  FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 67
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 68  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 122
Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 123 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 155

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 14  HLKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 70
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI +F P G L   L K   +I   D  +   Y +++ 
Sbjct: 71  LQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERI---DHIKLLQYTSQIC 127
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 128 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 164

>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) Bound To A 2-(aminothiazoly)phenol (cmp2) Length = 336

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 331 GELYAMKAMEKSVMLNRNKVHRACIEREIM---SLLDHPFLPTLYASFQTSTHICLITDF 387
           GE++ MK  +        KV       E +   + L  P +  LY + +    + +  + 
Sbjct: 72  GEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131
Query: 388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-H 446
             GG L  L+ +  M    ED A +Y  + + GLEYLH   I++ D+K +N+LL  DG  
Sbjct: 132 LEGGSLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSR 189
Query: 447 VVLTDF 452
             L DF
Sbjct: 190 AALCDF 195

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 9   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 67
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 68  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 127 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 176

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 35  FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 91
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 92  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 146
Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 147 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 179

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K I  LG G+ GSV L          G L A+K ++ S    +    R   E +I+  
Sbjct: 11  HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EIQILKA 67
Query: 363 LDHPFL----PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAE 416
           L   F+       Y   + S    L+ ++ P G L   L +   ++   D++R   Y+++
Sbjct: 68  LHSDFIVKYRGVSYGPGRQSLR--LVMEYLPSGCLRDFLQRHRARL---DASRLLLYSSQ 122
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  G+EYL     ++RDL   NIL++ + HV + DF L+
Sbjct: 123 ICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 161

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 119
Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 120 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +G G +G+V+       G+  A++ M      +K +++N   V R      I++ LD   
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLD--- 84
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA--EVVIGLEYLH 425
                 S+     + ++ ++  GG L  ++ +  M     D  +  A   E +  LE+LH
Sbjct: 85  ------SYLVGDELWVVMEYLAGGSLTDVVTETCM-----DEGQIAAVCRECLQALEFLH 133
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
              +I+RD+K +NILL  DG V LTDF   F     P+    + + G  + M   +    
Sbjct: 134 SNQVIHRDIKSDNILLGMDGSVKLTDF--GFCAQITPEQSKRSEMVGTPYWMAPEVVTRK 191
Query: 486 TYVP 489
            Y P
Sbjct: 192 AYGP 195

>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase (nik) Length = 352

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 331 GELYAMKAMEKSVMLNRNKVHRACIEREIM---SLLDHPFLPTLYASFQTSTHICLITDF 387
           GE++ MK  +        KV       E +   + L  P +  LY + +    + +  + 
Sbjct: 88  GEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 147
Query: 388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-H 446
             GG L  L+ +  M    ED A +Y  + + GLEYLH   I++ D+K +N+LL  DG  
Sbjct: 148 LEGGSLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSR 205
Query: 447 VVLTDF 452
             L DF
Sbjct: 206 AALCDF 211

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 119
Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 120 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 2/168 (1%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
           +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+HP
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELNHP 61
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + H 
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
             +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 168

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           ++ +G G  G VHL       ++ A+K + +  M   + +  A    E+M  L HP L  
Sbjct: 13  VQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFIEEA----EVMMKLSHPKLVQ 67
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        ICL+T+F   G L   L  Q   +F  ++      +V  G+ YL    +I
Sbjct: 68  LYGVCLEQAPICLVTEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVI 126
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+ ++  + ++DF ++
Sbjct: 127 HRDLAARNCLVGENQVIKVSDFGMT 151

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 119
Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 120 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 119
Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 120 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHP 366
           F+ I  LG G+ G V  V  + +G + A K +   +    RN++ R   E +++   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEY 423
           ++   Y +F +   I +  +   GG L  +L K    P +I  + S       V+ GL Y
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVIKGLTY 119
Query: 424 L-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I++RD+KP NIL+   G + L DF +S
Sbjct: 120 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K I  LG G+ GSV L          G L A+K ++ S    +    R   E +I+  
Sbjct: 24  HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EIQILKA 80
Query: 363 LDHPFL----PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAE 416
           L   F+       Y   + S    L+ ++ P G L   L +   ++   D++R   Y+++
Sbjct: 81  LHSDFIVKYRGVSYGPGRQSLR--LVMEYLPSGCLRDFLQRHRARL---DASRLLLYSSQ 135
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  G+EYL     ++RDL   NIL++ + HV + DF L+
Sbjct: 136 ICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 174

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K I  LG G+ GSV L          G L A+K ++ S    +    R   E +I+  
Sbjct: 12  HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EIQILKA 68
Query: 363 LDHPFL----PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAE 416
           L   F+       Y   + S    L+ ++ P G L   L +   ++   D++R   Y+++
Sbjct: 69  LHSDFIVKYRGVSYGPGRQSLR--LVMEYLPSGCLRDFLQRHRARL---DASRLLLYSSQ 123
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  G+EYL     ++RDL   NIL++ + HV + DF L+
Sbjct: 124 ICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 162

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAME---KSVMLNRNKVHRACIEREIMSLLD 364
           ++P+  +G G  G+V+      +G   A+K++        L  + V    + R + +  +
Sbjct: 6   YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAF-E 64
Query: 365 HPFLPTLYASFQTS-----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           HP +  L     TS       + L+ +     +L   LDK P      ++ +    + + 
Sbjct: 65  HPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQFLR 123
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
           GL++LH   I++RDLKPENIL+   G V L DF L+ + S +  +F
Sbjct: 124 GLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALF 169

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 331 GELYAMKAMEKSVMLNRN--KVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFC 388
           G  YA K +    +  R+  K+ R   E  I  LL H  +  L+ S        L+ D  
Sbjct: 29  GHEYAAKIINTKKLSARDHQKLER---EARICRLLKHSNIVRLHDSISEEGFHYLVFDLV 85
Query: 389 PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDG 445
            GGELF   D    + + E  A     +++  + + H +G+++RDLKPEN+LL    K  
Sbjct: 86  TGGELFE--DIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGA 143
Query: 446 HVVLTDFDLSFMTSCKPQVFY 466
            V L DF L+       Q ++
Sbjct: 144 AVKLADFGLAIEVQGDQQAWF 164

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +G G +G+V+       G+  A++ M      +K +++N   V R      I++ LD   
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLD--- 84
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA--EVVIGLEYLH 425
                 S+     + ++ ++  GG L  ++ +  M     D  +  A   E +  LE+LH
Sbjct: 85  ------SYLVGDELWVVMEYLAGGSLTDVVTETCM-----DEGQIAAVCRECLQALEFLH 133
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
              +I+RD+K +NILL  DG V LTDF   F     P+    + + G  + M   +    
Sbjct: 134 SNQVIHRDIKSDNILLGMDGSVKLTDF--GFCAQITPEQSKRSXMVGTPYWMAPEVVTRK 191
Query: 486 TYVP 489
            Y P
Sbjct: 192 AYGP 195

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVVAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M +++H  +  L   F     +    D     EL      Q ++
Sbjct: 62  Q-NQTHAKRAYRELVLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ 120
Query: 404 I-FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +    +   +   ++++G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 121 MELDHERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLA 173

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +G G +G+V+       G+  A++ M      +K +++N   V R      I++ LD   
Sbjct: 29  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLD--- 85
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA--EVVIGLEYLH 425
                 S+     + ++ ++  GG L  ++ +  M     D  +  A   E +  LE+LH
Sbjct: 86  ------SYLVGDELWVVMEYLAGGSLTDVVTETCM-----DEGQIAAVCRECLQALEFLH 134
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
              +I+RD+K +NILL  DG V LTDF   F     P+    + + G  + M   +    
Sbjct: 135 SNQVIHRDIKSDNILLGMDGSVKLTDF--GFCAQITPEQSKRSXMVGTPYWMAPEVVTRK 192
Query: 486 TYVP 489
            Y P
Sbjct: 193 AYGP 196

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL----- 362
           ++P+  +G G  G+V+      +G   A+K++                 RE+  L     
Sbjct: 11  YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEA 70
Query: 363 LDHPFLPTLYASFQTS-----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
            +HP +  L     TS       + L+ +     +L   LDK P      ++ +    + 
Sbjct: 71  FEHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQF 129
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           + GL++LH   I++RDLKPENIL+   G V L DF L+ + S
Sbjct: 130 LRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS 171

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +G G +G+V+       G+  A++ M      +K +++N   V R      I++ LD   
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLD--- 84
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA--EVVIGLEYLH 425
                 S+     + ++ ++  GG L  ++ +  M     D  +  A   E +  LE+LH
Sbjct: 85  ------SYLVGDELWVVMEYLAGGSLTDVVTETCM-----DEGQIAAVCRECLQALEFLH 133
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
              +I+RD+K +NILL  DG V LTDF   F     P+    + + G  + M   +    
Sbjct: 134 SNQVIHRDIKSDNILLGMDGSVKLTDF--GFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 191
Query: 486 TYVP 489
            Y P
Sbjct: 192 AYGP 195

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 355 IERE--IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
           +ERE  I  LL HP +  L+ S        L+ D   GGELF   D    + + E  A  
Sbjct: 77  LEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFE--DIVAREYYSEADASH 134
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLSFMTSCKPQVFY 466
              +++  + ++H   I++RDLKPEN+LL    K   V L DF L+     + Q ++
Sbjct: 135 CIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWF 191

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M +++H  +  L   F     +    D     EL      Q ++
Sbjct: 62  Q-NQTHAKRAYRELVLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ 120
Query: 404 I-FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +    +   +   ++++G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 121 MELDHERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLA 173

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAME---KSVMLNRNKVHRACIEREIMSLLD 364
           ++P+  +G G  G+V+      +G   A+K++        L  + V    + R + +  +
Sbjct: 6   YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAF-E 64
Query: 365 HPFLPTLYASFQTS-----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           HP +  L     TS       + L+ +     +L   LDK P      ++ +    + + 
Sbjct: 65  HPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQFLR 123
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           GL++LH   I++RDLKPENIL+   G V L DF L+ + S
Sbjct: 124 GLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS 163

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M +++H  +  L   F     +    D     EL      Q ++
Sbjct: 62  Q-NQTHAKRAYRELVLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ 120
Query: 404 I-FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +    +   +   ++++G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 121 MELDHERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLA 173

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAME---KSVMLNRNKVHRACIEREIMSLLD 364
           ++P+  +G G  G+V+      +G   A+K++        L  + V    + R + +  +
Sbjct: 6   YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAF-E 64
Query: 365 HPFLPTLYASFQTS-----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           HP +  L     TS       + L+ +     +L   LDK P      ++ +    + + 
Sbjct: 65  HPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQFLR 123
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           GL++LH   I++RDLKPENIL+   G V L DF L+ + S
Sbjct: 124 GLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS 163

>pdb|4HIA|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein Length = 176

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 42/161 (26%)
Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           D +Q   +    +R      + D  +P+ P++ A+  FL +T YT  +ILG NC FL+  
Sbjct: 2   DQKQFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRG 61
Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
           +                                           +    + IRDA++  R
Sbjct: 62  D------------------------------------------ENAQARADIRDALKLGR 79
Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD 222
           E+ V L NY  + + F NL  L P+        YF+G Q +
Sbjct: 80  ELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFE 120

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 355 IEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL-DKQPMKIFREDSARFY 413
           +E   +S ++HP +  LY +      +CL+ ++  GG L+ +L   +P+  +    A  +
Sbjct: 51  VELRQLSRVNHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSW 108
Query: 414 AAEVVIGLEYLHCL---GIIYRDLKPENILLQKDGHVV-LTDFDLSFMTSCKPQ 463
             +   G+ YLH +    +I+RDLKP N+LL   G V+ + DF     T+C  Q
Sbjct: 109 CLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFG----TACDIQ 158

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP + TL   +    ++ ++T+   GGEL   + +Q  K F E  A      +   +EYL
Sbjct: 75  HPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYL 132
Query: 425 HCLGIIYRDLKPENIL-LQKDGH---VVLTDFDLS---------FMTSC------KPQVF 465
           H  G+++RDLKP NIL + + G+   + + DF  +          MT C       P+V 
Sbjct: 133 HAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVL 192
Query: 466 ----YHAHVN--GFYFIMYKWLTGY 484
               Y A  +      ++Y  LTGY
Sbjct: 193 ERQGYDAACDIWSLGVLLYTMLTGY 217

>pdb|4HJ3|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein Length = 176

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 42/161 (26%)
Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           D +Q   +    +R      + D  +P+ P++ A+  FL +T YT  +ILG NC FL+  
Sbjct: 2   DQKQFEKIRAVFDRSGVALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRG 61
Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
           +                                           +    + IRDA++  R
Sbjct: 62  D------------------------------------------ENAQARADIRDALKLGR 79
Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD 222
           E+ V L NY  + + F NL  L P+        YF+G Q +
Sbjct: 80  ELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFE 120

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 355 IEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL-DKQPMKIFREDSARFY 413
           +E   +S ++HP +  LY +      +CL+ ++  GG L+ +L   +P+  +    A  +
Sbjct: 50  VELRQLSRVNHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSW 107
Query: 414 AAEVVIGLEYLHCL---GIIYRDLKPENILLQKDGHVV-LTDFDLSFMTSCKPQ 463
             +   G+ YLH +    +I+RDLKP N+LL   G V+ + DF     T+C  Q
Sbjct: 108 CLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFG----TACDIQ 157

>pdb|4HJ6|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 42/161 (26%)
Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           D +Q   +    +R      + D  +P+ P++ A+  FL +T YT  +ILG NC FL+  
Sbjct: 4   DQKQFEKIRAVFDRSGVALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRG 63
Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
           +                                           +    + IRDA++  R
Sbjct: 64  D------------------------------------------ENAQARADIRDALKLGR 81
Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD 222
           E+ V L NY  + + F NL  L P+        YF+G Q +
Sbjct: 82  ELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFE 122

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K I  LG G+ GSV L          G L A+K ++ S    +    R   E +I+  
Sbjct: 8   HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EIQILKA 64
Query: 363 LDHPFLPTLYA-SFQTS-THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L   F+      S+      + L+ ++ P G L   L +   ++   D++R   Y++++ 
Sbjct: 65  LHSDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQRHRARL---DASRLLLYSSQIC 121
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     ++RDL   NIL++ + HV + DF L+
Sbjct: 122 KGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 158

>pdb|4HJ4|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein Length = 177

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 42/161 (26%)
Query: 62  DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT 121
           D +Q   +    +R      + D  +P+ P++ A+  FL +T YT  +ILG NC FL+  
Sbjct: 3   DQKQFEKIRAVFDRSGVALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRG 62
Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
           +                                           +    + IRDA++  R
Sbjct: 63  D------------------------------------------ENAQARADIRDALKLGR 80
Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD 222
           E+ V L NY  + + F NL  L P+        YF+G Q +
Sbjct: 81  ELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFE 121

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 10  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 66
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 67  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 123
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 124 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 160

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 18  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 74
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 75  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 131
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 132 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 168

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 63
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +     +L   +D   +        + Y  +++ GL + 
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEHV-DQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 172

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+  +             A  E  ++  L+
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTE-TEGVPSTAIREISLLKELN 60
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 169

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+  +             A  E  ++  L+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTE-TEGVPSTAIREISLLKELN 59
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F    +L   +D   +        + Y  +++ GL + 
Sbjct: 60  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 168

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 11  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 67
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 124
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 125 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 14  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 70
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 71  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 127
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 128 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 164

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 11  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 67
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 124
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 125 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 16  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 72
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 73  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 129
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 130 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 166

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 9   HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 65
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 66  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 122
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 123 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 159

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 11  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 67
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 124
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 125 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
           H+  I+ LG G    V LVE    G  YA+K +      +R +  R   E ++  L +HP
Sbjct: 30  HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQR---EADMHRLFNHP 86
Query: 367 FLPTLYASF---QTSTH-ICLITDFCPGGELFALLD--KQPMKIFREDSARFYAAEVVIG 420
            +  L A     + + H   L+  F   G L+  ++  K       ED   +    +  G
Sbjct: 87  NILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRG 146
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           LE +H  G  +RDLKP NILL  +G  VL D 
Sbjct: 147 LEAIHAKGYAHRDLKPTNILLGDEGQPVLMDL 178

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 15  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 71
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 72  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 128
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 129 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 165

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 29  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 85
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 86  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 142
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 143 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 179

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 17  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 73
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 74  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 130
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 131 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 167

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 42  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 98
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 99  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 155
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 156 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 192

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP + TL   +    ++ ++T+   GGEL   + +Q     RE SA  +   +   +EYL
Sbjct: 75  HPNIITLKDVYDDGKYVYVVTELXKGGELLDKILRQKFFSEREASAVLFT--ITKTVEYL 132
Query: 425 HCLGIIYRDLKPENIL 440
           H  G+++RDLKP NIL
Sbjct: 133 HAQGVVHRDLKPSNIL 148

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 29  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 85
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 86  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 142
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 143 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 179

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ I  LG G  G V           YA+K +  +      K+     E  +++ L+H +
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT----EEKLSTILSEVMLLASLNHQY 63
Query: 368 LPTLYASF-------------QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           +   YA++             +  + + +  ++C    L+ L+  + +   R++  R + 
Sbjct: 64  VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDEYWRLFR 123
Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++  L Y+H  GII+RDLKP NI + +  +V + DF L+
Sbjct: 124 -QILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLA 163

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 2/170 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 59
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +     +L   +D   +        + Y  +++ GL + 
Sbjct: 60  HPNIVKLLDVIHTENKLYLVFEHV-HQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 168

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F+ I  LG G  G V           YA+K +  +      K+     E  +++ L+H +
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT----EEKLSTILSEVXLLASLNHQY 63
Query: 368 LPTLYASF-------------QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           +   YA++             +  + + +  ++C    L+ L+  + +   R++  R + 
Sbjct: 64  VVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHSENLNQQRDEYWRLFR 123
Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++  L Y+H  GII+R+LKP NI + +  +V + DF L+
Sbjct: 124 -QILEALSYIHSQGIIHRNLKPXNIFIDESRNVKIGDFGLA 163

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +G G +G+V+       G+  A++ M      +K +++N   V R      I++ LD   
Sbjct: 29  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLD--- 85
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA--EVVIGLEYLH 425
                 S+     + ++ ++  GG L  ++ +  M     D  +  A   E +  LE+LH
Sbjct: 86  ------SYLVGDELWVVMEYLAGGSLTDVVTETCM-----DEGQIAAVCRECLQALEFLH 134
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
              +I+R++K +NILL  DG V LTDF   F     P+    + + G  + M   +    
Sbjct: 135 SNQVIHRNIKSDNILLGMDGSVKLTDF--GFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 192
Query: 486 TYVP 489
            Y P
Sbjct: 193 AYGP 196

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           ++ +G G  G VHL       ++ A+K + +  M   + +  A    E+M  L HP L  
Sbjct: 12  VQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFIEEA----EVMMKLSHPKLVQ 66
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        ICL+ +F   G L   L  Q   +F  ++      +V  G+ YL    +I
Sbjct: 67  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEASVI 125
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+ ++  + ++DF ++
Sbjct: 126 HRDLAARNCLVGENQVIKVSDFGMT 150

>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770 Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS---LLD 364
           F  ++ +G G+ GSV     +  G +YA+K  +K +      V      RE+ +   L  
Sbjct: 9   FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLA---GSVDEQNALREVYAHAVLGQ 65
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLE 422
           H  +   ++++    H+ +  ++C GG L   + +  + M  F+E   +    +V  GL 
Sbjct: 66  HSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLR 125
Query: 423 YLHCLGIIYRDLKPENILLQK 443
           Y+H + +++ D+KP NI + +
Sbjct: 126 YIHSMSLVHMDIKPSNIFISR 146

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 5/173 (2%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M +++H  +  L   F     +    D     EL      Q ++
Sbjct: 62  Q-NQTHAKRAYRELVLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ 120
Query: 404 I-FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +    +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 121 MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLA 173

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 95  LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 153
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+ + S                   P+V         
Sbjct: 154 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 213
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 214 SFQSDVYAFGIVLYELMTGQLPY 236

>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839 Length = 287

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS---LLD 364
           F  ++ +G G+ GSV     +  G +YA+K  +K +      V      RE+ +   L  
Sbjct: 11  FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLA---GSVDEQNALREVYAHAVLGQ 67
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLE 422
           H  +   ++++    H+ +  ++C GG L   + +  + M  F+E   +    +V  GL 
Sbjct: 68  HSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLR 127
Query: 423 YLHCLGIIYRDLKPENILLQK 443
           Y+H + +++ D+KP NI + +
Sbjct: 128 YIHSMSLVHMDIKPSNIFISR 148

>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396 Length = 287

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS---LLD 364
           F  ++ +G G+ GSV     +  G +YA+K  +K +      V      RE+ +   L  
Sbjct: 11  FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLA---GSVDEQNALREVYAHAVLGQ 67
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLE 422
           H  +   ++++    H+ +  ++C GG L   + +  + M  F+E   +    +V  GL 
Sbjct: 68  HSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLR 127
Query: 423 YLHCLGIIYRDLKPENILLQK 443
           Y+H + +++ D+KP NI + +
Sbjct: 128 YIHSMSLVHMDIKPSNIFISR 148

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 96  LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 154
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+ + S                   P+V         
Sbjct: 155 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 214
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 215 SFQSDVYAFGIVLYELMTGQLPY 237

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLD 364
            FK ++ LG G   +V+    +G  +   +    K V L+  +   +   REI  M  L 
Sbjct: 6   QFKQLEKLGNGTYATVY----KGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELK 61
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPM----KIFREDSARFYAAEVVIG 420
           H  +  LY    T   + L+ +F    +L   +D + +    +    +  +++  +++ G
Sbjct: 62  HENIVRLYDVIHTENKLTLVFEFM-DNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQG 120
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L + H   I++RDLKP+N+L+ K G + L DF L+
Sbjct: 121 LAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLA 155

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           ++ +G G  G VHL       ++ A+K + +  M   + +  A    E+M  L HP L  
Sbjct: 15  VQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFIEEA----EVMMKLSHPKLVQ 69
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        ICL+ +F   G L   L  Q   +F  ++      +V  G+ YL    +I
Sbjct: 70  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVI 128
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+ ++  + ++DF ++
Sbjct: 129 HRDLAARNCLVGENQVIKVSDFGMT 153

>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed With Inhibitor Pd0407824 Length = 289

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS---LLD 364
           F  ++ +G G+ GSV     +  G +YA+K  +K +      V      RE+ +   L  
Sbjct: 13  FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLA---GSVDEQNALREVYAHAVLGQ 69
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLE 422
           H  +   ++++    H+ +  ++C GG L   + +  + M  F+E   +    +V  GL 
Sbjct: 70  HSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLR 129
Query: 423 YLHCLGIIYRDLKPENILLQK 443
           Y+H + +++ D+KP NI + +
Sbjct: 130 YIHSMSLVHMDIKPSNIFISR 150

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T+  + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 68  LFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 126
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+ + S                   P+V         
Sbjct: 127 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 186
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 187 SFQSDVYAFGIVLYELMTGQLPY 209

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMK-AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           K +G G  G V+  +L  +GEL A+K  ++     NR        E +IM  LDH  +  
Sbjct: 26  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR--------ELQIMRKLDHCNIVR 77
Query: 371 LYASFQTS------THICLITDFCPGGELFALLD----KQPMKIFREDSARFYAAEVVIG 420
           L   F +S       ++ L+ D+ P             KQ + +      + Y  ++   
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPATVYRVARHYSRAKQTLPVI---YVKLYMYQLFRS 134
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 15/156 (9%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEK--SVMLNRNKVHRACIEREIMSLLDH 365
            + ++P+G G  GSV         +  A+K + +    +++  + +R   E  ++  L H
Sbjct: 30  LQGLRPVGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTYR---ELRLLKHLKH 86
Query: 366 PFLPTLYASFQTSTHI------CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
             +  L   F  +T I       L+T    G +L  ++  Q +    ++  +F   +++ 
Sbjct: 87  ENVIGLLDVFTPATSIEDFSEVYLVTTLM-GADLNNIVKSQALS---DEHVQFLVYQLLR 142
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GL+Y+H  GII+RDLKP N+ + +D  + + DF L+
Sbjct: 143 GLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLA 178

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 9/153 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ ++P+G G  G+V        G   A+K + +    +     RA  E  ++  + H  
Sbjct: 27  YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHEN 85
Query: 368 LPTLYASFQTSTHICLITDF---CP--GGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           +  L   F     +   TDF    P  G +L  L+  + +    ED  +F   +++ GL 
Sbjct: 86  VIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLG---EDRIQFLVYQMLKGLR 142
Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           Y+H  GII+RDLKP N+ + +D  + + DF L+
Sbjct: 143 YIHAAGIIHRDLKPGNLAVNEDCELKILDFGLA 175

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           ++ +G G  G VHL       ++ A+K + +  M   + +  A    E+M  L HP L  
Sbjct: 10  VQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFIEEA----EVMMKLSHPKLVQ 64
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        ICL+ +F   G L   L  Q   +F  ++      +V  G+ YL    +I
Sbjct: 65  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVI 123
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+ ++  + ++DF ++
Sbjct: 124 HRDLAARNCLVGENQVIKVSDFGMT 148

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T  ++ ++T +C G  L+  L  Q  K F+       A +   G++YLH   II
Sbjct: 96  LFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTAQGMDYLHAKNII 154
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           +RD+K  NI L +   V + DF L+ + S
Sbjct: 155 HRDMKSNNIFLHEGLTVKIGDFGLATVKS 183

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           ++ +G G  G VHL       ++ A+K + +  M   + +  A    E+M  L HP L  
Sbjct: 12  VQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFIEEA----EVMMKLSHPKLVQ 66
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        ICL+ +F   G L   L  Q   +F  ++      +V  G+ YL    +I
Sbjct: 67  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVI 125
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+ ++  + ++DF ++
Sbjct: 126 HRDLAARNCLVGENQVIKVSDFGMT 150

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 70  LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 128
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+ + S                   P+V         
Sbjct: 129 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 188
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 189 SFQSDVYAFGIVLYELMTGQLPY 211

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 73  LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 131
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+ + S                   P+V         
Sbjct: 132 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 191
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 192 SFQSDVYAFGIVLYELMTGQLPY 214

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 73  LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 131
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+ + S                   P+V         
Sbjct: 132 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 191
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 192 SFQSDVYAFGIVLYELMTGQLPY 214

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 74
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 75  DNPHVCRLLGICLTST-VQLITQLMPFGXLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 132
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 133 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 176

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 12  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 68
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L K   +I   D  +   Y +++ 
Sbjct: 69  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQIC 125
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+R+L   NIL++ +  V + DF L+
Sbjct: 126 KGMEYLGTKRYIHRNLATRNILVENENRVKIGDFGLT 162

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 53/214 (24%)
Query: 249 TAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHF 308
           T E+ NEAVRE                        K  + S + I+++ G+GE       
Sbjct: 15  TFEDPNEAVREFA----------------------KEIDISCVKIEQVIGAGE------- 45
Query: 309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
                   G+  S HL +L G  E++      KS    + +      E  IM   DHP +
Sbjct: 46  -------FGEVCSGHL-KLPGKREIFVAIKTLKSGYTEKQR-RDFLSEASIMGQFDHPNV 96
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV-------IGL 421
             L      ST + +IT+F   G L + L        R++  +F   ++V        G+
Sbjct: 97  IHLEGVVTKSTPVMIITEFMENGSLDSFL--------RQNDGQFTVIQLVGMLRGIAAGM 148
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +YL  +  ++RDL   NIL+  +    ++DF LS
Sbjct: 149 KYLADMNYVHRDLAARNILVNSNLVCKVSDFGLS 182

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 68  LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 126
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+ + S                   P+V         
Sbjct: 127 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 186
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 187 SFQSDVYAFGIVLYELMTGQLPY 209

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKXVN 81
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI-FREDSARFYAAEVVIGLEY 423
           H  + +L   F     +    D     EL      Q +++    +   +   +++ G+++
Sbjct: 82  HKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKH 141
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 142 LHSAGIIHRDLKPSNIVVKSDXTLKILDFGLA 173

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI 355
           I G   +  ++  + +  +G G  G V  +  +  G + A+K M +S     NK  R  +
Sbjct: 15  IGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENK--RILM 72
Query: 356 EREI-MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           + ++ +   D P++   + +F T+T + +  +    G     L K+      E       
Sbjct: 73  DLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM--GTCAEKLKKRMQGPIPERILGKMT 130
Query: 415 AEVVIGLEYL-HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             +V  L YL    G+I+RD+KP NILL + G + L DF +S
Sbjct: 131 VAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGIS 172

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 5/173 (2%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    D     EL      Q ++
Sbjct: 62  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ 120
Query: 404 I-FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +    +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 121 MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLA 173

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKXVN 81
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI-FREDSARFYAAEVVIGLEY 423
           H  + +L   F     +    D     EL      Q +++    +   +   +++ G+++
Sbjct: 82  HKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLCGIKH 141
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 142 LHSAGIIHRDLKPSNIVVKSDXTLKILDFGLA 173

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
            K I+ LG G  G V L      G+    +   KS+       H A +++EI  L  L H
Sbjct: 23  LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYH 82
Query: 366 PFLPTLYASFQT---STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
             +   Y    T      I LI +F P G L   L K   KI  +   + YA ++  G++
Sbjct: 83  ENI-VKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLK-YAVQICKGMD 140
Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YL     ++RDL   N+L++ +  V + DF L+
Sbjct: 141 YLGSRQYVHRDLAARNVLVESEHQVKIGDFGLT 173

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 81
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI-FREDSARFYAAEVVIGLEY 423
           H  + +L   F     +    D     EL      Q +++    +   +   +++ G+++
Sbjct: 82  HKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKH 141
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 142 LHSAGIIHRDLKPSNIVVKSDXTLKILDFGLA 173

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      +
Sbjct: 70  LGLGINGKVLQIFNKRTQEKFALKXLQDCPKARREVELHWRASQCPHIVRIVD------V 123
Query: 372 YASFQTSTHICLITDFC-PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           Y +        LI   C  GGELF+ +  +  + F E  A      +   ++YLH + I 
Sbjct: 124 YENLYAGRKCLLIVXECLDGGELFSRIQDRGDQAFTEREASEIXKSIGEAIQYLHSINIA 183
Query: 431 YRDLKPENILL---QKDGHVVLTDFDLSFMTS 459
           +RD+KPEN+L    + +  + LTDF  +  T+
Sbjct: 184 HRDVKPENLLYTSKRPNAILKLTDFGFAKETT 215

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 14/157 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+  
Sbjct: 14  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILKS 70
Query: 363 LDHPFLPTLYASFQTS--THICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVV 418
           L H  +        ++   ++ LI ++ P G L   L     +I   D  +   Y +++ 
Sbjct: 71  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERI---DHIKLLQYTSQIC 127
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 128 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 164

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMK-AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           K +G G  G V+  +L  +GEL A+K  ++     NR        E +IM  LDH  +  
Sbjct: 26  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR--------ELQIMRKLDHCNIVR 77
Query: 371 LYASFQTS------THICLITDFCPGGELFALLD----KQPMKIFREDSARFYAAEVVIG 420
           L   F +S       ++ L+ D+ P             KQ + +      + Y  ++   
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVI---YVKLYMYQLFRS 134
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 74
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI-FREDSARFYAAEVVIGLEY 423
           H  + +L   F     +    D     EL      Q +++    +   +   +++ G+++
Sbjct: 75  HKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKH 134
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 135 LHSAGIIHRDLKPSNIVVKSDXTLKILDFGLA 166

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMK-AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           K +G G  G V+  +L  +GEL A+K  ++     NR        E +IM  LDH  +  
Sbjct: 26  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR--------ELQIMRKLDHCNIVR 77
Query: 371 LYASFQTS------THICLITDFCPGGELFALLD----KQPMKIFREDSARFYAAEVVIG 420
           L   F +S       ++ L+ D+ P             KQ + +      + Y  ++   
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVI---YVKLYMYQLFRS 134
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  ++ +G G  G+V+        E+ A+K M  S   +  K      E   +  L HP 
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFAL-LDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
                  +       L+ ++C G     L + K+P++   E +A  + A  + GL YLH 
Sbjct: 77  TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEV-EIAAVTHGA--LQGLAYLHS 133
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDF 452
             +I+RD+K  NILL + G V L DF
Sbjct: 134 HNMIHRDVKAGNILLSEPGLVKLGDF 159

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIG 420
           L H  +     SF  +  I +  +  PGG L ALL  +  P+K   E +  FY  +++ G
Sbjct: 76  LKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKD-NEQTIGFYTKQILEG 134
Query: 421 LEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLS 455
           L+YLH   I++RD+K +N+L+    G + ++DF  S
Sbjct: 135 LKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTS 170

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
            K I+ LG G  G V L      G+    +   KS+       H A +++EI  L  L H
Sbjct: 11  LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYH 70
Query: 366 PFLPTLYASFQT---STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
             +   Y    T      I LI +F P G L   L K   KI  +   + YA ++  G++
Sbjct: 71  ENI-VKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLK-YAVQICKGMD 128
Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YL     ++RDL   N+L++ +  V + DF L+
Sbjct: 129 YLGSRQYVHRDLAARNVLVESEHQVKIGDFGLT 161

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 96  LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 154
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+   S                   P+V         
Sbjct: 155 HRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 214
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 215 SFQSDVYAFGIVLYELMTGQLPY 237

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 26  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 81
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P        
Sbjct: 82  LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVAR 138
Query: 398 D----KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
                KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 139 HYSRAKQTLPVIY---VKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 195

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 17  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 72
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P        
Sbjct: 73  LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVAR 129
Query: 398 D----KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
                KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 130 HYSRAKQTLPVI---YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 186

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 11  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 66
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P        
Sbjct: 67  LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVAR 123
Query: 398 D----KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
                KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 124 HYSRAKQTLPVI---YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 180

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMK-AMEKS 342
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K  ++  
Sbjct: 6   KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK 65
Query: 343 VMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFAL 396
              NR        E +IM  LDH  +  L   F +S       ++ L+ D+ P       
Sbjct: 66  RFKNR--------ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVA 117
Query: 397 LD----KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTD 451
                 KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L D
Sbjct: 118 RHYSRAKQTLPVI---YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCD 174
Query: 452 F 452
           F
Sbjct: 175 F 175

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           ++ +G G  G VHL       ++ A+K +++  M   + +  A    E+M  L HP L  
Sbjct: 32  VQEIGSGQFGLVHLGYWLNKDKV-AIKTIKEGSMSEDDFIEEA----EVMMKLSHPKLVQ 86
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        ICL+ +F   G L   L  Q   +F  ++      +V  G+ YL    +I
Sbjct: 87  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVI 145
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+ ++  + ++DF ++
Sbjct: 146 HRDLAARNCLVGENQVIKVSDFGMT 170

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-MSLLDHP 366
            +PI  LG G  G V       +G++ A+K +  +V  N  +  R   + +I    +D P
Sbjct: 36  LEPIXELGRGAYGVVEKXRHVPSGQIXAVKRIRATV--NSQEQKRLLXDLDISXRTVDCP 93
Query: 367 FLPTLYASF--QTSTHICL-ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           F  T Y +   +    IC  + D         ++DK   +   ED     A  +V  LE+
Sbjct: 94  FTVTFYGALFREGDVWICXELXDTSLDKFYKQVIDKG--QTIPEDILGKIAVSIVKALEH 151
Query: 424 LHC-LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           LH  L +I+RD+KP N+L+   G V   DF +S
Sbjct: 152 LHSKLSVIHRDVKPSNVLINALGQVKXCDFGIS 184

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 10  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 65
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P        
Sbjct: 66  LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVAR 122
Query: 398 D----KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
                KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 123 HYSRAKQTLPVI---YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 179

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 32  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 87
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P   ++ + 
Sbjct: 88  LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVA 143
Query: 398 -----DKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTD 451
                 KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L D
Sbjct: 144 RHYSRAKQTLPVIY---VKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCD 200
Query: 452 F 452
           F
Sbjct: 201 F 201

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 32  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 87
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P   ++ + 
Sbjct: 88  LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVA 143
Query: 398 -----DKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTD 451
                 KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L D
Sbjct: 144 RHYSRAKQTLPVIY---VKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCD 200
Query: 452 F 452
           F
Sbjct: 201 F 201

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 15/156 (9%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEK--SVMLNRNKVHRACIEREIMSLLDH 365
            + ++P+G G  GSV         +  A+K + +    +++  + +R   E  ++  L H
Sbjct: 30  LQGLRPVGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTYR---ELRLLKHLKH 86
Query: 366 PFLPTLYASFQTSTHI------CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
             +  L   F  +T I       L+T    G +L  ++  Q +    ++  +F   +++ 
Sbjct: 87  ENVIGLLDVFTPATSIEDFSEVYLVTTLM-GADLNNIVKCQALS---DEHVQFLVYQLLR 142
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GL+Y+H  GII+RDLKP N+ + +D  + + DF L+
Sbjct: 143 GLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLA 178

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 331 GELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFLPTLYASFQTSTHICLITDFC 388
           G+ +A+K ++ +   +   +    ++RE  I  +L HP +  L  ++ +   + ++ +F 
Sbjct: 49  GQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFM 108
Query: 389 PGGEL-FALLDKQPMK-IFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QK 443
            G +L F ++ +     ++ E  A  Y  +++  L Y H   II+RD+KPEN+LL   + 
Sbjct: 109 DGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPENVLLASKEN 168
Query: 444 DGHVVLTDFDLS 455
              V L DF ++
Sbjct: 169 SAPVKLGDFGVA 180

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 21/158 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKSQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGL 171

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 10  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 65
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P        
Sbjct: 66  LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVAR 122
Query: 398 D----KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
                KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 123 HYSRAKQTLPVI---YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 179

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 34  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 89
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P   ++ + 
Sbjct: 90  LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVA 145
Query: 398 -----DKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTD 451
                 KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L D
Sbjct: 146 RHYSRAKQTLPVIY---VKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCD 202
Query: 452 F 452
           F
Sbjct: 203 F 203

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 88  LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 146
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+   S                   P+V         
Sbjct: 147 HRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 206
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 207 SFQSDVYAFGIVLYELMTGQLPY 229

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  ++ +G G  G+V+        E+ A+K M  S   +  K      E   +  L HP 
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFAL-LDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
                  +       L+ ++C G     L + K+P++   E +A  + A  + GL YLH 
Sbjct: 116 TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEV-EIAAVTHGA--LQGLAYLHS 172
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDF 452
             +I+RD+K  NILL + G V L DF
Sbjct: 173 HNMIHRDVKAGNILLSEPGLVKLGDF 198

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 36  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 91
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P   ++ + 
Sbjct: 92  LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVA 147
Query: 398 -----DKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTD 451
                 KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L D
Sbjct: 148 RHYSRAKQTLPVIY---VKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCD 204
Query: 452 F 452
           F
Sbjct: 205 F 205

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKXQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLA 172

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIG 420
           L H  +     SF  +  I +  +  PGG L ALL  +  P+K   E +  FY  +++ G
Sbjct: 62  LKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKD-NEQTIGFYTKQILEG 120
Query: 421 LEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLS 455
           L+YLH   I++RD+K +N+L+    G + ++DF  S
Sbjct: 121 LKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTS 156

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKXVN 81
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 82  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 138
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 139 IKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLA 173

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 285 RDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K     V
Sbjct: 77  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KV 132
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------THICLITDFCPGGELFALL 397
           + ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P   ++ + 
Sbjct: 133 LQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVA 188
Query: 398 -----DKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTD 451
                 KQ + +      + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ L D
Sbjct: 189 RHYSRAKQTLPVIY---VKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCD 245
Query: 452 F 452
           F
Sbjct: 246 F 246

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 22/163 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +  +KPLGCG  G V         +  A+K   K V+ +   V  A  E +I+  LDH  
Sbjct: 13  YMDLKPLGCGGNGLVFSAVDNDCDKRVAIK---KIVLTDPQSVKHALREIKIIRRLDHDN 69
Query: 368 LPTLY--------------ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFY 413
           +  ++               S      + ++ ++    +L  +L++ P+    E+ AR +
Sbjct: 70  IVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMET-DLANVLEQGPL---LEEHARLF 125
Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDFDLS 455
             +++ GL+Y+H   +++RDLKP N+ +  +  V+ + DF L+
Sbjct: 126 MYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLA 168

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 27  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 84
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 85  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 142
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 143 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 186

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 20  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 77
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 78  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 135
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 136 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 179

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 42  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 99
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 100 DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 157
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 158 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 201

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           F  I+ +G G  G V L +     + YA+K +       R+    A I ++I +   +  
Sbjct: 37  FLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNN 96
Query: 368 LPTLY-ASFQTSTHICLITDFCP-GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
               Y   F    H+CLI  F P G  L+ ++ +     F  +  + Y  E++  L YL 
Sbjct: 97  NIVKYHGKFMYYDHMCLI--FEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR 154
Query: 426 CLGIIYRDLKPENILL 441
            + + + DLKPENILL
Sbjct: 155 KMSLTHTDLKPENILL 170

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 24  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 81
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 82  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 139
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 140 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 183

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 74
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 75  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 132
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 133 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 176

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 76
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 77  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 134
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 135 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 178

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 23  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 80
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 81  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 138
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 139 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 182

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 74
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 75  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 132
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 133 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 176

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMK-AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           K +G G  G V+  +L  +GEL A+K  ++     NR        E +IM  LDH  +  
Sbjct: 26  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR--------ELQIMRKLDHCNIVR 77
Query: 371 LYASFQTS------THICLITDFCPGGELFALLD----KQPMKIFREDSARFYAAEVVIG 420
           L   F +S       ++ L+ D+ P             KQ + +      + Y  ++   
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVI---YVKLYMYQLFRS 134
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMK-AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           K +G G  G V+  +L  +GEL A+K  ++     NR        E +IM  LDH  +  
Sbjct: 27  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR--------ELQIMRKLDHCNIVR 78
Query: 371 LYASFQTS------THICLITDFCPGGELFALLD----KQPMKIFREDSARFYAAEVVIG 420
           L   F +S       ++ L+ D+ P             KQ + +      + Y  ++   
Sbjct: 79  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVI---YVKLYMYQLFRS 135
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 136 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 168

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 20  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 77
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 78  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 135
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 136 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 179

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMK-AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           K +G G  G V+  +L  +GEL A+K  ++     NR        E +IM  LDH  +  
Sbjct: 26  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR--------ELQIMRKLDHCNIVR 77
Query: 371 LYASFQTS------THICLITDFCPGGELFALLD----KQPMKIFREDSARFYAAEVVIG 420
           L   F +S       ++ L+ D+ P             KQ + +      + Y  ++   
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVI---YVKLYMYQLFRS 134
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 68
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 69  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 126
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 127 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 170

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 20  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 77
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 78  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 135
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 136 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 179

>pdb|3KGA|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With A Potent 3-Aminopyrazole Atp Site Inhibitor Length = 299

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 26  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 83
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 84  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 140
Query: 432 RDLKPENILL---QKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGY 484
           RD+KPEN+L    + +  + LTDF  +  T+ + +      +     IMY  L GY
Sbjct: 141 RDVKPENLLYTSKRPNAILKLTDFGFAKETTGE-KYDKSCDMWSLGVIMYILLCGY 195

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMK-AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           K +G G  G V+  +L  +GEL A+K  ++     NR        E +IM  LDH  +  
Sbjct: 26  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR--------ELQIMRKLDHCNIVR 77
Query: 371 LYASFQTS------THICLITDFCPGGELFALLD----KQPMKIFREDSARFYAAEVVIG 420
           L   F +S       ++ L+ D+ P             KQ + +      + Y  ++   
Sbjct: 78  LRYFFYSSGEKKDVVYLNLVLDYVPETVYRVARHYSRAKQTLPVI---YVKLYMYQLFRS 134
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 9/160 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V        G   A+K + +    N+    RA  E  ++  ++
Sbjct: 23  LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQ-NQTHAKRAYRELVLLKCVN 81
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++       +   +   +++ G
Sbjct: 82  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCG 138
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC 460
           +++LH  GII+RDLKP NI+++ D  + + DF L+  T+C
Sbjct: 139 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA-RTAC 177

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 147
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 148 QLVGMLRGIASGMKYLSDMGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 205

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMK-AMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           K +G G  G V+  +L  +GEL A+K  ++     NR        E +IM  LDH  +  
Sbjct: 26  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR--------ELQIMRKLDHCNIVR 77
Query: 371 LYASFQTS------THICLITDFCPGGELFALLD----KQPMKIFREDSARFYAAEVVIG 420
           L   F +S       ++ L+ D+ P             KQ + +      + Y  ++   
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVI---YVKLYMYQLFRS 134
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 23/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K +G G  G V+  +L  +GEL A+K     V+ ++   +R   E +IM  LDH  +  L
Sbjct: 31  KVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNR---ELQIMRKLDHCNIVRL 83
Query: 372 YASFQTS------THICLITDFCPGGELFALL-----DKQPMKIFREDSARFYAAEVVIG 420
              F +S       ++ L+ D+ P   ++ +       KQ + +      + Y  ++   
Sbjct: 84  RYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIY---VKLYMYQLFRS 139
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 140 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 172

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 30  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 86
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 87  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 139
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT 181

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 27/143 (18%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L+  + T   + ++T +C G  L+  L     K F        A +   G++YLH   II
Sbjct: 68  LFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSII 126
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQVF-------- 465
           +RDLK  NI L +D  V + DF L+   S                   P+V         
Sbjct: 127 HRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 186
Query: 466 -YHAHVNGFYFIMYKWLTGYFTY 487
            + + V  F  ++Y+ +TG   Y
Sbjct: 187 SFQSDVYAFGIVLYELMTGQLPY 209

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 22  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 80
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 81  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 137
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 138 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 172

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K +G G  G V+  +L  +GEL A+K     V+ ++   +R   E +IM  LDH  +  L
Sbjct: 30  KVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNR---ELQIMRKLDHCNIVRL 82
Query: 372 YASFQTS------THICLITDFCPGGELFALLD----KQPMKIFREDSARFYAAEVVIGL 421
              F +S       ++ L+ D+ P             KQ + +      + Y  ++   L
Sbjct: 83  RYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVI---YVKLYMYQLFRSL 139
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
            Y+H  GI +RD+KP+N+LL  D  V+ L DF
Sbjct: 140 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 171

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKXQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 30  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 86
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 87  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 139
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLA 178

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 26  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 82
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 83  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 135
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLA 174

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 81
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 82  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 138
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 139 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 5/173 (2%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    D     EL      Q ++
Sbjct: 62  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ 120
Query: 404 I-FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +    +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 121 MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 74
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 75  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 131
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 132 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 166

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFI 476
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T  +   F          I
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEI 193
Query: 477 MYKWL 481
           M  W+
Sbjct: 194 MLNWM 198

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 67  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 118
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 119 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 176

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ 442
           ++ ++C  G +  +LD  P K F    A  Y  +++ GLEYLH  GI+++D+KP N+LL 
Sbjct: 85  MVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLT 143
Query: 443 KDGHVVLTDFDLS 455
             G + ++   ++
Sbjct: 144 TGGTLKISALGVA 156

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 17  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 75
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 76  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 132
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 133 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 167

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + K     ++ +H     RE         
Sbjct: 36  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSKPF---QSIIHAKRTYRELRLLKHMKH 92
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 93  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 145
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 146 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 184

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEK--SVMLNRNKVHRACIEREIMSLLDHPFL 368
           ++P+G G  GSV         +  A+K + +    +++  + +R   E  ++  L H  +
Sbjct: 25  LRPVGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTYR---ELRLLKHLKHENV 81
Query: 369 PTLYASFQTSTHI------CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
             L   F  +T I       L+T    G +L  ++  Q +    ++  +F   +++ GL+
Sbjct: 82  IGLLDVFTPATSIEDFSEVYLVTTLM-GADLNNIVKCQALS---DEHVQFLVYQLLRGLK 137
Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           Y+H  GII+RDLKP N+ + +D  + + DF L+
Sbjct: 138 YIHSAGIIHRDLKPSNVAVNEDCELRILDFGLA 170

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 61  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 119
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 120 HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 176
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 177 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 211

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 24  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 82
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 83  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 139
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 140 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 174

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 81
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 82  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 138
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 139 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFI 476
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T  +   F          I
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEI 193
Query: 477 MYKWL 481
           M  W+
Sbjct: 194 MLNWM 198

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 24  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 82
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 83  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 139
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 140 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 174

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 17  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 75
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 76  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 132
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 133 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 167

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 20  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 76
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 77  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 129
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 168

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 20  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 76
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 77  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 129
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFI 476
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T  +   F          I
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEI 189
Query: 477 MYKWL 481
           M  W+
Sbjct: 190 MLNWM 194

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 44  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 100
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 101 ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 153
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T
Sbjct: 154 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT 195

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 84  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 135
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 136 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 193

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 14  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 71
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 72  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAEGMNY 129
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 130 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 173

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 43  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 99
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 100 ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 152
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T
Sbjct: 153 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT 194

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 61  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 119
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 120 HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCG 176
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 177 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 211

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 44  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 100
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 101 ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 153
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T
Sbjct: 154 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT 195

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 34  YQNLAPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 90
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 91  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 143
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T
Sbjct: 144 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT 185

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 147
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 205

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 147
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 205

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 147
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 205

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 29  YQNLSPIGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 85
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 86  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 138
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLA 177

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 94  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 145
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 146 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 203

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 147
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 205

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-------RNKVHRACIEREIMSLLDHP 366
           LGCG+ GSV     QG   +Y M+  +  V +        +        E +IM  LD+P
Sbjct: 18  LGCGNFGSVR----QG---VYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNP 70
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           ++  L    Q    + L+ +   GG L   L  +  +I   + A     +V +G++YL  
Sbjct: 71  YIVRLIGVCQAEA-LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLH-QVSMGMKYLEE 128
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              ++RDL   N+LL    +  ++DF LS
Sbjct: 129 KNFVHRDLAARNVLLVNRHYAKISDFGLS 157

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 26  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 83
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 84  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 140
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 141 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 200
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 201 DMWSLGVIMYILLCGY 216

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 31  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 87
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 88  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 140
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T+
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTA 183

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 18  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 75
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 76  DNPHVCRLLGICLTST-VQLIMQLMPFGXLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 133
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 134 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 177

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 70  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 127
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 128 YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 184
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 185 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 244
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 245 DMWSLGVIMYILLCGY 260

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 76  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 133
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 134 YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 190
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 191 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 250
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 251 DMWSLGVIMYILLCGY 266

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 8/159 (5%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           GSG  + +   K ++ +G G+ G V L + +G     A+K ++     N         E 
Sbjct: 4   GSGWALNMKELKLLQTIGKGEFGDVMLGDYRG--NKVAVKCIK-----NDATAQAFLAEA 56
Query: 358 EIMSLLDHPFLPTLYASF-QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
            +M+ L H  L  L     +    + ++T++   G L   L  +   +   D    ++ +
Sbjct: 57  SVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLD 116
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           V   +EYL     ++RDL   N+L+ +D    ++DF L+
Sbjct: 117 VCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLT 155

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 29  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 85
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 86  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 138
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLA 177

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 31  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 87
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 88  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 140
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T+
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTA 183

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 31  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 87
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 88  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 140
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T+
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTA 183

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV--MLNRNKVHRAC------IEREI 359
           ++ + P+G G  GSV       +G   A+K + +    +++  + +R            +
Sbjct: 53  YQTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 112
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           + LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +++ 
Sbjct: 113 IGLLD-VFTPA--TSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQILR 165
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 166 GLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 201

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V        G   A+K + +    N+    RA  E  ++  ++
Sbjct: 21  LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQ-NQTHAKRAYRELVLLKCVN 79
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  + +L   F        + +F     +  L+D    ++       +   +   +++ G
Sbjct: 80  HKNIISLLNVFTPQK---TLEEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCG 136
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           +++LH  GII+RDLKP NI+++ D  + + DF L+   S
Sbjct: 137 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAS 175

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 35  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 91
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 92  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 144
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 145 ILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLA 183

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFYLA 172

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 32  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 89
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 90  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 146
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 147 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 206
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 207 DMWSLGVIMYILLCGY 222

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    +F     +  L+D    +
Sbjct: 62  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL---EEFQDVYIVMELMDANLCQ 117
Query: 404 IFR----EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +     +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 118 VIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    +F     +  L+D    +
Sbjct: 62  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL---EEFQDVYIVMELMDANLCQ 117
Query: 404 IFR----EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +     +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 118 VIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 24  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 81
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 82  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 138
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 139 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 198
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 199 DMWSLGVIMYILLCGY 214

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 29/174 (16%)
Query: 298 GSGEKIGLH--HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVH 351
           G G+    H  + K I+ LG G  G V L        G GE+ A+KA++     +    H
Sbjct: 21  GPGDPTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKA----DAGPQH 76
Query: 352 RACIEREIMSLLDHPFLPTLYASFQTSTHIC----------LITDFCPGGELFALLDKQP 401
           R+  ++EI        L TLY         C          L+ ++ P G L   L +  
Sbjct: 77  RSGWKQEI------DILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS 130
Query: 402 MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + + +      +A ++  G+ YLH    I+RDL   N+LL  D  V + DF L+
Sbjct: 131 IGLAQ---LLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLA 181

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 30  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 87
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 88  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 144
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 145 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 204
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 205 DMWSLGVIMYILLCGY 220

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE----REIMSLL 363
            K +K LG G  G+V+       GE   +    K  +LN     +A +E      IM+ +
Sbjct: 40  LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIK--ILNETTGPKANVEFMDEALIMASM 97
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           DHP L  L     + T I L+T   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 98  DHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLEYVHEHKDNIGSQLLLN-WCVQIAKGMMY 155
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L    +++RDL   N+L++   HV +TDF L+
Sbjct: 156 LEERRLVHRDLAARNVLVKSPNHVKITDFGLA 187

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           IK LG G  G V +    G  ++ A+K ++   M   + +  A    +IM  L H  L  
Sbjct: 14  IKRLGNGQFGEVWMGTWNGNTKV-AIKTLKPGTMSPESFLEEA----QIMKKLKHDKLVQ 68
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LYA   +   I ++T++   G L   L     +  +  +    AA+V  G+ Y+  +  I
Sbjct: 69  LYAVV-SEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYI 127
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL+  NIL+       + DF L+
Sbjct: 128 HRDLRSANILVGNGLICKIADFGLA 152

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 31  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 88
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 89  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 145
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 146 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 205
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 206 DMWSLGVIMYILLCGY 221

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
           FK I+ +G G  G V   + +  G+ Y +K         R K +    ERE+ +L  LDH
Sbjct: 13  FKEIELIGSGGFGQVFKAKHRIDGKTYVIK---------RVKYNNEKAEREVKALAKLDH 63
Query: 366 ----------------PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
                           P   +  +S   +  + +  +FC  G L   ++K+  +   +  
Sbjct: 64  VNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVL 123
Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK 461
           A     ++  G++Y+H   +I RDLKP NI L     V + DF L  +TS K
Sbjct: 124 ALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGL--VTSLK 173

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH--RACIEREIMSLLDHPFLPTL 371
           LG G  G V     +  G+  A+K +  S    +   H  +A     I+ +LD      +
Sbjct: 18  LGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILD------V 71
Query: 372 YASFQTSTHICLITDFC-PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           Y +        LI   C  GGELF+ + ++  + F E  A     ++   +++LH   I 
Sbjct: 72  YENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIA 131
Query: 431 YRDLKPENILL---QKDGHVVLTDFDLSFMTS 459
           +RD+KPEN+L    +KD  + LTDF  +  T+
Sbjct: 132 HRDVKPENLLYTSKEKDAVLKLTDFGFAKETT 163

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 25  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 82
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 83  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 139
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 140 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 199
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 200 DMWSLGVIMYILLCGY 215

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    +F     +  L+D    +
Sbjct: 62  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL---EEFQDVYIVMELMDANLCQ 117
Query: 404 IFR----EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +     +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 118 VIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 26  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 83
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 84  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 140
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 141 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 200
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 201 DMWSLGVIMYILLCGY 216

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 47  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 103
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 104 ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 156
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 157 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 195

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 30/196 (15%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 40  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 97
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 98  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 154
Query: 432 RDLKPENILL---QKDGHVVLTDFDL--------SFMTSCKPQVFYHAHVNG-------- 472
           RD+KPEN+L    + +  + LTDF          S  T C    +    V G        
Sbjct: 155 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 214
Query: 473 ----FYFIMYKWLTGY 484
                  IMY  L GY
Sbjct: 215 DMWSLGVIMYILLCGY 230

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 36  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 92
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 93  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 145
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 146 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 184

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 36  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 92
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 93  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 145
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 146 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 184

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 22  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 78
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 79  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 131
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 132 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 170

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 5/173 (2%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    D     EL      Q ++
Sbjct: 62  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ 120
Query: 404 I-FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +    +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 121 MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 29  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 85
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 86  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 138
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 177

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 23  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 79
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 80  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 132
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 133 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 171

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 10  KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 66
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    +F     +  L+D    +
Sbjct: 67  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL---EEFQDVYIVMELMDANLCQ 122
Query: 404 IFR----EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +     +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 123 VIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 178

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE----REIMSLL 363
            K +K LG G  G+V+       GE   +    K  +LN     +A +E      IM+ +
Sbjct: 17  LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIK--ILNETTGPKANVEFMDEALIMASM 74
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           DHP L  L     + T I L+T   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 75  DHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLEYVHEHKDNIGSQLLLN-WCVQIAKGMMY 132
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L    +++RDL   N+L++   HV +TDF L+
Sbjct: 133 LEERRLVHRDLAARNVLVKSPNHVKITDFGLA 164

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 5   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 61
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    +F     +  L+D    +
Sbjct: 62  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL---EEFQDVYIVMELMDANLCQ 117
Query: 404 IFR----EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +     +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 118 VIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 26  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 82
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 83  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 135
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 174

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 35  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 91
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 92  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 144
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 145 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 183

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH--RACIEREIMSLLDHPFLPTL 371
           LG G  G V     +  G+  A+K +  S    +   H  +A     I+ +LD      +
Sbjct: 37  LGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILD------V 90
Query: 372 YASFQTSTHICLITDFC-PGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           Y +        LI   C  GGELF+ + ++  + F E  A     ++   +++LH   I 
Sbjct: 91  YENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIA 150
Query: 431 YRDLKPENILL---QKDGHVVLTDFDLSFMTS 459
           +RD+KPEN+L    +KD  + LTDF  +  T+
Sbjct: 151 HRDVKPENLLYTSKEKDAVLKLTDFGFAKETT 182

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 16/181 (8%)
Query: 294 QKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRA 353
           Q +    ++I     K  K +G G+ G V    L+  G+     A++       +K  R 
Sbjct: 17  QAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRD 76
Query: 354 CI-EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
            + E  IM   DHP +  L         + +IT++   G L A L        R++  RF
Sbjct: 77  FLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFL--------RKNDGRF 128
Query: 413 YAAEVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
              ++V        G++YL  +  ++RDL   NIL+  +    ++DF +S +    P+  
Sbjct: 129 TVIQLVGMLRGIGSGMKYLSDMSAVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAA 188
Query: 466 Y 466
           Y
Sbjct: 189 Y 189

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 21  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 77
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 78  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 130
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 131 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 169

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 44  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 100
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 101 ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 153
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 154 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 192

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 30  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 86
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 87  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 139
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+  T
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT 181

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN-KVH-RACIEREIMSLLDHPFLPTL 371
           LG G  G V  +  +   E +A+K ++      R  ++H RA     I+ ++D      L
Sbjct: 24  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVD--VYENL 81
Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
           YA  +    + ++ +   GGELF+ +  +  + F E  A      +   ++YLH + I +
Sbjct: 82  YAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAH 138
Query: 432 RDLKPENILL---QKDGHVVLTDFDLSFMTS 459
           RD+KPEN+L    + +  + LTDF  +  T+
Sbjct: 139 RDVKPENLLYTSKRPNAILKLTDFGFAKETT 169

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 30  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 86
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 87  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 139
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 178

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 29  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 85
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 86  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 138
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 177

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 43  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 99
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 100 ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 152
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 153 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 191

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 5/173 (2%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 7   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 63
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    D     EL      Q ++
Sbjct: 64  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ 122
Query: 404 I-FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +    +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 123 MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 175

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 26  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 82
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 83  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 135
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 174

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 20  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 76
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 77  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 129
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 168

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 31  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 87
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 88  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 140
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 179

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           KRDN+ + +++   G      L  ++ +KP+G G  G V            A+K + +  
Sbjct: 6   KRDNNFY-SVE--IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF 62
Query: 344 MLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
             N+    RA  E  +M  ++H  +  L   F     +    +F     +  L+D    +
Sbjct: 63  Q-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL---EEFQDVYIVMELMDANLCQ 118
Query: 404 IFR----EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +     +   +   +++ G+++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 119 VIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 174

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 21  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 77
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 78  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 130
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 131 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 169

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           +  ++ ++ +G G  G V+  +    G + A+K +      +      A  E  ++  L 
Sbjct: 20  MEKYQKLEKVGEGTYGVVYKAK-DSQGRIVALKRIRLDAE-DEGIPSTAIREISLLKELH 77
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP + +L     +   + L+ +F    +L  +LD+    + ++   + Y  +++ G+ + 
Sbjct: 78  HPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENKTGL-QDSQIKIYLYQLLRGVAHC 135
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   I++RDLKP+N+L+  DG + L DF L+       + + H  V  +Y
Sbjct: 136 HQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWY 185

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 16/181 (8%)
Query: 294 QKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRA 353
           Q +    ++I     K  K +G G+ G V    L+  G+     A++       +K  R 
Sbjct: 2   QAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRD 61
Query: 354 CI-EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
            + E  IM   DHP +  L         + +IT++   G L A L        R++  RF
Sbjct: 62  FLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFL--------RKNDGRF 113
Query: 413 YAAEVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVF 465
              ++V        G++YL  +  ++RDL   NIL+  +    ++DF +S +    P+  
Sbjct: 114 TVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAA 173
Query: 466 Y 466
           Y
Sbjct: 174 Y 174

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 26  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 82
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 83  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 135
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 174

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 172

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 47  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 103
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 104 ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 156
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 157 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 195

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 8/184 (4%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
           ++ I  +G G  G V     +  G++ A+K   +S     + V +    REI  L  L H
Sbjct: 5   YEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLES---EDDPVIKKIALREIRMLKQLKH 61
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P L  L   F+    + L+ ++C    L  L   Q  +   E   +    + +  + + H
Sbjct: 62  PNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCH 119
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYF 485
               I+RD+KPENIL+ K   + L DF  + + +  P  +Y   V   ++   + L G  
Sbjct: 120 KHNCIHRDVKPENILITKHSVIKLCDFGFARLLT-GPSDYYDDEVATRWYRSPELLVGDT 178
Query: 486 TYVP 489
            Y P
Sbjct: 179 QYGP 182

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 147
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF L+ +    P+  Y
Sbjct: 148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAY 205

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR-----NKVHRACIEREIM 360
             +  + PLG G  G V     +   +   +K ++K  +L        K+ +  +E  I+
Sbjct: 24  QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAIL 83
Query: 361 SLLDHPFLPTLYASFQTSTHICLITD-FCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           S ++H  +  +   F+      L+ +    G +LFA +D+ P     E  A +   ++V 
Sbjct: 84  SRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPR--LDEPLASYIFRQLVS 141
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
            + YL    II+RD+K ENI++ +D  + L DF
Sbjct: 142 AVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDF 174

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 23/173 (13%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGE----LYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
             + +K LG G  G+V+       GE      A+K + ++     NK      E  +M+ 
Sbjct: 18  ELRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANK--EILDEAYVMAG 75
Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF-------YAA 415
           +  P++  L     TST + L+T   P G    LLD       RE+  R        +  
Sbjct: 76  VGSPYVSRLLGICLTST-VQLVTQLMPYG---CLLDH-----VRENRGRLGSQDLLNWCM 126
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           ++  G+ YL  + +++RDL   N+L++   HV +TDF L+ +     +  YHA
Sbjct: 127 QIAKGMSYLEDVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDID-ETEYHA 178

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           +  ++ ++ +G G  G V+  +    G + A+K +      +      A  E  ++  L 
Sbjct: 20  MEKYQKLEKVGEGTYGVVYKAK-DSQGRIVALKRIRLDAE-DEGIPSTAIREISLLKELH 77
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP + +L     +   + L+ +F    +L  +LD+    + ++   + Y  +++ G+ + 
Sbjct: 78  HPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENKTGL-QDSQIKIYLYQLLRGVAHC 135
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   I++RDLKP+N+L+  DG + L DF L+       + + H  V  +Y
Sbjct: 136 HQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWY 185

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           G  ++  L  ++ +K LG G  G V     +  GE+ A+K +  +   N     R    R
Sbjct: 1   GRVDRHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ-NSTDAQRTF--R 57
Query: 358 EIMSLLD---HPFLPTLYASFQTSTH--ICLITDFCPGGELFALLDKQPMKIFREDSARF 412
           EIM L +   H  +  L    +      + L+ D+    +L A++      I      ++
Sbjct: 58  EIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYMET-DLHAVIRAN---ILEPVHKQY 113
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              +++  ++YLH  G+++RD+KP NILL  + HV + DF LS
Sbjct: 114 VVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLS 156

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-EREIMSLLDHPFLPT 370
           K +G G+ G V    L+  G+     A++       +K  R  + E  IM   DHP +  
Sbjct: 14  KVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIH 73
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV-------IGLEY 423
           L         + +IT++   G L A L        R++  RF   ++V        G++Y
Sbjct: 74  LEGVVTKCKPVMIITEYMENGSLDAFL--------RKNDGRFTVIQLVGMLRGIGSGMKY 125
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           L  +  ++RDL   NIL+  +    ++DF +S +    P+  Y
Sbjct: 126 LSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAY 168

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T+    G L + L        R+  A+F   
Sbjct: 67  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFL--------RKHDAQFTVI 118
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 119 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 176

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 33/191 (17%)
Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGEL-YAMKAMEKS 342
           K   +S I I+++ G+GE               G+  S  L +L G  EL  A+K ++  
Sbjct: 17  KEIEASCITIERVIGAGE--------------FGEVCSGRL-KLPGKRELPVAIKTLK-- 59
Query: 343 VMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPM 402
           V     +      E  IM   DHP +  L      S  + ++T++   G L   L K   
Sbjct: 60  VGYTEKQRRDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKK--- 116
Query: 403 KIFREDSARFYAAEVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                +  +F   ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS
Sbjct: 117 -----NDGQFTVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLS 171
Query: 456 FMTSCKPQVFY 466
            +    P+  Y
Sbjct: 172 RVLEDDPEAAY 182

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T+    G L + L        R+  A+F   
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFL--------RKHDAQFTVI 147
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 148 QLVGMLRGIASGMKYLSDMGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 205

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 74
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 75  DNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 132
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 133 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 176

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T++   G L + L        R+  A+F   
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--------RKHDAQFTVI 147
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF L  +    P+  Y
Sbjct: 148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAY 205

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 18  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 75
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 76  DNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 133
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 134 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 177

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 76
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 77  DNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 134
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 135 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 178

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 21  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 78
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 79  DNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 136
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 137 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 180

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 5/154 (3%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           +I     K +K LG G  G V +     + ++ A+K ++   M     V     E  +M 
Sbjct: 8   EIPRESIKLVKKLGAGQFGEVWMGYYNNSTKV-AVKTLKPGTM----SVQAFLEEANLMK 62
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            L H  L  LYA       I +IT+F   G L   L               ++A++  G+
Sbjct: 63  TLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGM 122
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            Y+     I+RDL+  N+L+ +     + DF L+
Sbjct: 123 AYIERKNYIHRDLRAANVLVSESLMCKIADFGLA 156

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 20  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 77
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 78  DNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 135
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 136 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 179

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K +G G  G V   +L  + E+   K ++     NR        E +IM ++ HP +  L
Sbjct: 46  KVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNR--------ELQIMRIVKHPNVVDL 97
Query: 372 YASFQTS------THICLITDFCP-----GGELFALLDKQPMKIFREDSARFYAAEVVIG 420
            A F ++        + L+ ++ P         +A L KQ M +      + Y  +++  
Sbjct: 98  KAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKL-KQTMPMLL---IKLYMYQLLRS 153
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
           L Y+H +GI +RD+KP+N+LL     V+ L DF
Sbjct: 154 LAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDF 186

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 24  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 81
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 82  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 139
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF  + +   + +  YHA
Sbjct: 140 LEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKE-YHA 183

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  IM   DHP +  L      S  + ++T+    G L + L        R+  A+F   
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFL--------RKHDAQFTVI 147
Query: 416 EVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           ++V        G++YL  +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 205

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 17  LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 75
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR----EDSARFYAAEVVIG 420
           H  +  L   F     +    +F     +  L+D    ++ +     +   +   +++ G
Sbjct: 76  HKNIIGLLNVFTPQKSL---EEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCG 132
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++LH  GII+RDLKP NI+++ D  + + DF L+
Sbjct: 133 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 167

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 76
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 77  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 134
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF  + +   + +  YHA
Sbjct: 135 LEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKE-YHA 178

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
Query: 308 FKPIKPLGCGDTGSVH--LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
           FK IK LG G  G+V+  L   +G      +  ME     +         E  +M+ +D+
Sbjct: 51  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEAYVMASVDN 110
Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ YL 
Sbjct: 111 PHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNYLE 168
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
              +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 169 DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 210

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  GSV     + +GE  A+K + +     ++++      RE++ LL H        
Sbjct: 32  VGSGAYGSVCSAIDKRSGEKVAIKKLSRPF---QSEIFAKRAYRELL-LLKH-------- 79
Query: 374 SFQTSTHICLITDFCPGGEL-----------FALLDKQPMK--IFREDSARFYAAEVVIG 420
             Q    I L+  F P   L           F   D Q +    F E+  ++   +++ G
Sbjct: 80  -MQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKG 138
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L+Y+H  G+++RDLKP N+ + +D  + + DF L+
Sbjct: 139 LKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA 173

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 74
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 75  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 132
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF  + +   + +  YHA
Sbjct: 133 LEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKE-YHA 176

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK L  G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 17  FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 74
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 75  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 132
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 133 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 176

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  GSV     + +GE  A+K + +     ++++      RE++ LL H        
Sbjct: 50  VGSGAYGSVCSAIDKRSGEKVAIKKLSRPF---QSEIFAKRAYRELL-LLKH-------- 97
Query: 374 SFQTSTHICLITDFCPGGEL-----------FALLDKQPMK--IFREDSARFYAAEVVIG 420
             Q    I L+  F P   L           F   D Q +    F E+  ++   +++ G
Sbjct: 98  -MQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKG 156
Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L+Y+H  G+++RDLKP N+ + +D  + + DF L+
Sbjct: 157 LKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA 191

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK L  G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 24  FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 81
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LIT   P G L   + +    I  +     +  ++  G+ Y
Sbjct: 82  DNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 139
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 140 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 183

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + D+ L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDYGLA 172

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 30/183 (16%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSL 362
           +  +  ++ +G G  G V+  +    GE +A+K   +EK    +         E  I+  
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQ-NNYGETFALKKIRLEKE---DEGIPSTTIREISILKE 56
Query: 363 LDHPFLPTLYASFQTSTHICLI-----------TDFCPGGELFALLDKQPMKIFREDSAR 411
           L H  +  LY    T   + L+            D C GG                 +A+
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGG-------------LESVTAK 103
Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVN 471
            +  +++ G+ Y H   +++RDLKP+N+L+ ++G + + DF L+       + + H  V 
Sbjct: 104 SFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVT 163
Query: 472 GFY 474
            +Y
Sbjct: 164 LWY 166

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 30/183 (16%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSL 362
           +  +  ++ +G G  G V+  +    GE +A+K   +EK    +         E  I+  
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQ-NNYGETFALKKIRLEKE---DEGIPSTTIREISILKE 56
Query: 363 LDHPFLPTLYASFQTSTHICLI-----------TDFCPGGELFALLDKQPMKIFREDSAR 411
           L H  +  LY    T   + L+            D C GG                 +A+
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGG-------------LESVTAK 103
Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVN 471
            +  +++ G+ Y H   +++RDLKP+N+L+ ++G + + DF L+       + + H  V 
Sbjct: 104 SFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVT 163
Query: 472 GFY 474
            +Y
Sbjct: 164 LWY 166

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 30/183 (16%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKA--MEKSVMLNRNKVHRACIEREIMSL 362
           +  +  ++ +G G  G V+  +    GE +A+K   +EK    +         E  I+  
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQ-NNYGETFALKKIRLEKE---DEGIPSTTIREISILKE 56
Query: 363 LDHPFLPTLYASFQTSTHICLI-----------TDFCPGGELFALLDKQPMKIFREDSAR 411
           L H  +  LY    T   + L+            D C GG                 +A+
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGG-------------LESVTAK 103
Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVN 471
            +  +++ G+ Y H   +++RDLKP+N+L+ ++G + + DF L+       + + H  V 
Sbjct: 104 SFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVT 163
Query: 472 GFY 474
            +Y
Sbjct: 164 LWY 166

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 26  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 81
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 82  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 141
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 183

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 192 LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 246
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 247 VV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 305
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 306 LRAANILVGENLVCKVADFGLA 327

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTD 451
           +L   LDK P      ++ +    +++ GL++LH   +++RDLKP+NIL+   G + L D
Sbjct: 104 DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLAD 163
Query: 452 FDLSFMTS 459
           F L+ + S
Sbjct: 164 FGLARIYS 171

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 34  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 89
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 90  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 149
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 150 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 191

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 20  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 76
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++    +    +D  +F   +
Sbjct: 77  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCAKLT---DDHVQFLIYQ 129
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 168

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 192 LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 246
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 247 VV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 305
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 306 LRAANILVGENLVCKVADFGLA 327

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE 358
           SG  + +   K ++ +G G+ G V L + +G     A+K ++     N         E  
Sbjct: 186 SGWALNMKELKLLQTIGKGEFGDVMLGDYRG--NKVAVKCIK-----NDATAQAFLAEAS 238
Query: 359 IMSLLDHPFLPTLYASF-QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           +M+ L H  L  L     +    + ++T++   G L   L  +   +   D    ++ +V
Sbjct: 239 VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDV 298
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              +EYL     ++RDL   N+L+ +D    ++DF L+
Sbjct: 299 CEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLT 336

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 21  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 76
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 77  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD 136
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 178

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 31/174 (17%)
Query: 289 SWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN 348
           S + I+++ G+GE               G+  S HL +L G  E++      KS    + 
Sbjct: 7   SCVKIEQVIGAGE--------------FGEVCSGHL-KLPGKREIFVAIKTLKSGYTEKQ 51
Query: 349 KVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRED 408
           +      E  IM   DHP +  L      ST + +IT+F   G L + L        R++
Sbjct: 52  R-RDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFL--------RQN 102
Query: 409 SARFYAAEVV-------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             +F   ++V        G++YL  +  ++R L   NIL+  +    ++DF LS
Sbjct: 103 DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRALAARNILVNSNLVCKVSDFGLS 156

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE 358
           SG  + +   K ++ +G G+ G V L + +G     A+K ++     N         E  
Sbjct: 14  SGWALNMKELKLLQTIGKGEFGDVMLGDYRG--NKVAVKCIK-----NDATAQAFLAEAS 66
Query: 359 IMSLLDHPFLPTLYASF-QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           +M+ L H  L  L     +    + ++T++   G L   L  +   +   D    ++ +V
Sbjct: 67  VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDV 126
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              +EYL     ++RDL   N+L+ +D    ++DF L+
Sbjct: 127 CEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLT 164

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 23  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 78
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 79  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 138
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 139 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 180

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 26  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 81
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 82  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD 141
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 183

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 21  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 76
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 77  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 136
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 178

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 23  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 78
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 79  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 138
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 139 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 180

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 26  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 81
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 82  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 141
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 183

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 21  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 76
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 77  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD 136
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 178

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTD 451
           +L   LDK P      ++ +    +++ GL++LH   +++RDLKP+NIL+   G + L D
Sbjct: 104 DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLAD 163
Query: 452 FDLSFMTS 459
           F L+ + S
Sbjct: 164 FGLARIYS 171

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 275 LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 329
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 330 VV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 388
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 389 LRAANILVGENLVCKVADFGLA 410

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V++    G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 40  LGGGQYGEVYV----GVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 95
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    ++T++ P G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 96  VCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRD 155
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 156 LAARNCLVGENHVVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 197

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-EREIMSLLDHPFLPTLY 372
           +G G+ G V    L+  G+     A++   +    K  R  + E  IM   DHP +  L 
Sbjct: 51  IGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLE 110
Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV-------IGLEYLH 425
                   + ++ +F   G L A L        R+   +F   ++V        G+ YL 
Sbjct: 111 GVVTRGKPVMIVIEFMENGALDAFL--------RKHDGQFTVIQLVGMLRGIAAGMRYLA 162
Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
            +G ++RDL   NIL+  +    ++DF LS +    P+  Y
Sbjct: 163 DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVY 203

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 25  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 80
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 81  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 140
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 141 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 182

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 21  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 76
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 77  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 136
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 178

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTD 451
           +L   LDK P      ++ +    +++ GL++LH   +++RDLKP+NIL+   G + L D
Sbjct: 104 DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLAD 163
Query: 452 FDLSFMTS 459
           F L+ + S
Sbjct: 164 FGLARIYS 171

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-------RNKVHRACIEREIMSLLDHP 366
           LGCG+ GSV     QG   +Y M+  +  V +        +        E +IM  LD+P
Sbjct: 344 LGCGNFGSVR----QG---VYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNP 396
Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           ++  L    Q    + L+ +   GG L   L  +  +I   + A     +V +G++YL  
Sbjct: 397 YIVRLIGVCQAEA-LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLH-QVSMGMKYLEE 454
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              ++R+L   N+LL    +  ++DF LS
Sbjct: 455 KNFVHRNLAARNVLLVNRHYAKISDFGLS 483

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 16  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 70
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 71  VV-SEEPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 129
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 130 LRAANILVGENLVCKVADFGLA 151

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 312 KPLGCGDTGSVHLVELQGAGEL---YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           K +G GD+G V    L+  G+     A+KA++      + +   +  E  IM   DHP +
Sbjct: 55  KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLS--EASIMGQFDHPNI 112
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV-------IGL 421
             L           ++T++   G L   L        R    +F   ++V        G+
Sbjct: 113 IRLEGVVTRGRLAMIVTEYMENGSLDTFL--------RTHDGQFTIMQLVGMLRGVGAGM 164
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
            YL  LG ++RDL   N+L+  +    ++DF LS +    P   Y
Sbjct: 165 RYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAY 209

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           IG    + ++ LG G  G V   E     G     A+K ++  V+     +     E   
Sbjct: 9   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 68
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M  LDH  L  LY    T   + ++T+  P G L   L K          +R YA +V  
Sbjct: 69  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSR-YAVQVAE 126
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           G+ YL     I+RDL   N+LL     V + DF L
Sbjct: 127 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 161

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 22  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 77
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 78  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 137
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L+ ++  V + DF LS
Sbjct: 138 LAARNCLVGENHLVKVADFGLS 159

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 19  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 73
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 74  VV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 132
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 133 LRAANILVGENLVCKVADFGLA 154

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ +  +G G  G    +  +  G++   K ++   M    K      E  ++  L HP 
Sbjct: 8   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEK-QMLVSEVNLLRELKHPN 66
Query: 368 LPTLYASF--QTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEY 423
           +   Y     +T+T + ++ ++C GG+L +++ K  +  +   E+       ++ + L+ 
Sbjct: 67  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE 126
Query: 424 LHCLG-----IIYRDLKPENILLQKDGHVVLTDFDLS 455
            H        +++RDLKP N+ L    +V L DF L+
Sbjct: 127 CHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 163

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ +  +G G  G    +  +  G++   K ++   M    K      E  ++  L HP 
Sbjct: 8   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEK-QMLVSEVNLLRELKHPN 66
Query: 368 LPTLYASF--QTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEY 423
           +   Y     +T+T + ++ ++C GG+L +++ K  +  +   E+       ++ + L+ 
Sbjct: 67  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE 126
Query: 424 LHCLG-----IIYRDLKPENILLQKDGHVVLTDFDLS 455
            H        +++RDLKP N+ L    +V L DF L+
Sbjct: 127 CHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 163

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 23  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 78
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 79  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 138
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L+ ++  V + DF LS
Sbjct: 139 LAARNCLVGENHLVKVADFGLS 160

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ +  +G G  G    +  +  G++   K ++   M    K      E  ++  L HP 
Sbjct: 8   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEK-QMLVSEVNLLRELKHPN 66
Query: 368 LPTLYASF--QTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEY 423
           +   Y     +T+T + ++ ++C GG+L +++ K  +  +   E+       ++ + L+ 
Sbjct: 67  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE 126
Query: 424 LHCLG-----IIYRDLKPENILLQKDGHVVLTDFDLS 455
            H        +++RDLKP N+ L    +V L DF L+
Sbjct: 127 CHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 163

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 26  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 81
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 82  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 141
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L+ ++  V + DF LS
Sbjct: 142 LAARNCLVGENHLVKVADFGLS 163

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           +I     K +K LG G  G V +     + ++ A+K ++   M     V     E  +M 
Sbjct: 9   EIPRESIKLVKRLGAGQFGEVWMGYYNNSTKV-AVKTLKPGTM----SVQAFLEEANLMK 63
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            L H  L  LYA       I +IT++   G L   L               ++A++  G+
Sbjct: 64  TLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGM 123
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            Y+     I+RDL+  N+L+ +     + DF L+
Sbjct: 124 AYIERKNYIHRDLRAANVLVSESLMCKIADFGLA 157

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K LG G  G V +       ++ A+K M+   M     V     E  +M  L H  L  L
Sbjct: 188 KKLGAGQFGEVWMATYNKHTKV-AVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKL 242
Query: 372 YASFQTSTHICLITDFCPGGELFALL-----DKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +A   T   I +IT+F   G L   L      KQP+    +     ++A++  G+ ++  
Sbjct: 243 HAVV-TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLID-----FSAQIAEGMAFIEQ 296
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I+RDL+  NIL+       + DF L+
Sbjct: 297 RNYIHRDLRAANILVSASLVCKIADFGLA 325

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 19  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 74
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 75  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD 134
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L+ ++  V + DF LS
Sbjct: 135 LAARNCLVGENHLVKVADFGLS 156

>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase Ck2alpha With Altered Cosubstrate Specificity Length = 335

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+L+  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVLIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K LG G  G V +       ++ A+K M+   M     V     E  +M  L H  L  L
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKV-AVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKL 248
Query: 372 YASFQTSTHICLITDFCPGGELFALL-----DKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +A   T   I +IT+F   G L   L      KQP+    +     ++A++  G+ ++  
Sbjct: 249 HAVV-TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLID-----FSAQIAEGMAFIEQ 302
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I+RDL+  NIL+       + DF L+
Sbjct: 303 RNYIHRDLRAANILVSASLVCKIADFGLA 331

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G V   + +G  ++ A+K +++  M     +  A    ++M  L H  L  
Sbjct: 14  LKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFIEEA----KVMMNLSHEKLVQ 68
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        I +IT++   G L   L +   + F+         +V   +EYL     +
Sbjct: 69  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQFL 127
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+   G V ++DF LS
Sbjct: 128 HRDLAARNCLVNDQGVVKVSDFGLS 152

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           K LG G  G V +       ++ A+K M+   M     V     E  +M  L H  L  L
Sbjct: 21  KKLGAGQFGEVWMATYNKHTKV-AVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKL 75
Query: 372 YASFQTSTHICLITDFCPGGELFALL-----DKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +A   T   I +IT+F   G L   L      KQP+    +     ++A++  G+ ++  
Sbjct: 76  HAVV-TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLID-----FSAQIAEGMAFIEQ 129
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I+RDL+  NIL+       + DF L+
Sbjct: 130 RNYIHRDLRAANILVSASLVCKIADFGLA 158

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 27/163 (16%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + K I+ LG G  G V L        G GE+ A+KA++          HR+  ++EI   
Sbjct: 15  YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADC----GPQHRSGWKQEI--- 67
Query: 363 LDHPFLPTLYASF----------QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
                L TLY             Q    + L+ ++ P G L   L +  + + +      
Sbjct: 68  ---DILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHSIGLAQ---LLL 121
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +A ++  G+ YLH    I+R+L   N+LL  D  V + DF L+
Sbjct: 122 FAQQICEGMAYLHAQHYIHRNLAARNVLLDNDRLVKIGDFGLA 164

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 19  LGGGQFGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 74
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 75  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD 134
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L+ ++  V + DF LS
Sbjct: 135 LAARNCLVGENHLVKVADFGLS 156

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           IG    + ++ LG G  G V   E     G     A+K ++  V+     +     E   
Sbjct: 9   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 68
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M  LDH  L  LY    T   + ++T+  P G L   L K          +R YA +V  
Sbjct: 69  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSR-YAVQVAE 126
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           G+ YL     I+RDL   N+LL     V + DF L
Sbjct: 127 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 161

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           IG    + ++ LG G  G V   E     G     A+K ++  V+     +     E   
Sbjct: 15  IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 74
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M  LDH  L  LY    T   + ++T+  P G L   L K          +R YA +V  
Sbjct: 75  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSR-YAVQVAE 132
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           G+ YL     I+RDL   N+LL     V + DF L
Sbjct: 133 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 167

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           IG    + ++ LG G  G V   E     G     A+K ++  V+     +     E   
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M  LDH  L  LY    T   + ++T+  P G L   L K          +R YA +V  
Sbjct: 65  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSR-YAVQVAE 122
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           G+ YL     I+RDL   N+LL     V + DF L
Sbjct: 123 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 157

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDH 365
           ++ +  +G G  G V     +  G+  A+K   K +M N  +       REI  + LL H
Sbjct: 20  YEKLAKIGQGTFGEVFKARHRKTGQKVALK---KVLMENEKEGFPITALREIKILQLLKH 76
Query: 366 PFLPTLYASFQTSTH--------ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
             +  L    +T           I L+ DFC   +L  LL    +K    +  R     +
Sbjct: 77  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQM-L 134
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL----SFMTSCKPQVFYHAHVNGF 473
           + GL Y+H   I++RD+K  N+L+ +DG + L DF L    S   + +P  + +  V  +
Sbjct: 135 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVTLW 194
Query: 474 Y 474
           Y
Sbjct: 195 Y 195

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           IG    + ++ LG G  G V   E     G     A+K ++  V+     +     E   
Sbjct: 15  IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 74
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M  LDH  L  LY    T   + ++T+  P G L   L K          +R YA +V  
Sbjct: 75  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSR-YAVQVAE 132
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           G+ YL     I+RDL   N+LL     V + DF L
Sbjct: 133 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 167

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 17  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 71
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 72  VV-SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 130
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 131 LRAANILVGENLVCKVADFGLA 152

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 15  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 69
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 70  VV-SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 128
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 129 LRAANILVGENLVCKVADFGLA 150

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           IG    + ++ LG G  G V   E     G     A+K ++  V+     +     E   
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M  LDH  L  LY    T   + ++T+  P G L   L K          +R YA +V  
Sbjct: 65  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSR-YAVQVAE 122
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           G+ YL     I+RDL   N+LL     V + DF L
Sbjct: 123 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 157

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G V   + +G  ++ A+K +++  M     +  A    ++M  L H  L  
Sbjct: 13  LKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFIEEA----KVMMNLSHEKLVQ 67
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        I +IT++   G L   L +   + F+         +V   +EYL     +
Sbjct: 68  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQFL 126
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+   G V ++DF LS
Sbjct: 127 HRDLAARNCLVNDQGVVKVSDFGLS 151

>pdb|3GNI|B Chain B, Structure Of Strad And Mo25 Length = 389

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 315 GCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYAS 374
           G  D  +V+L   +  GE   ++ +      N   V     E  +  L +HP +    A+
Sbjct: 36  GFEDLMTVNLARYKPTGEYVTVRRINLEACSNE-MVTFLQGELHVSKLFNHPNIVPYRAT 94
Query: 375 FQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDL 434
           F     + ++T F   G    L+    M    E +  +    V+  L+Y+H +G ++R +
Sbjct: 95  FIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSV 154
Query: 435 KPENILLQKDGHVVLTDF--DLSFMTSCKPQVFYH 467
           K  +IL+  DG V L+    +LS ++  + Q   H
Sbjct: 155 KASHILISVDGKVYLSGLRSNLSMISHGQRQRVVH 189

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G V   + +G  ++ A+K +++  M     +  A    ++M  L H  L  
Sbjct: 9   LKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFIEEA----KVMMNLSHEKLVQ 63
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        I +IT++   G L   L +   + F+         +V   +EYL     +
Sbjct: 64  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQFL 122
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+   G V ++DF LS
Sbjct: 123 HRDLAARNCLVNDQGVVKVSDFGLS 147

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           IG    + ++ LG G  G V   E     G     A+K ++  V+     +     E   
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M  LDH  L  LY    T   + ++T+  P G L   L K          +R YA +V  
Sbjct: 65  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSR-YAVQVAE 122
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           G+ YL     I+RDL   N+LL     V + DF L
Sbjct: 123 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 157

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G V   + +G  ++ A+K +++  M     +  A    ++M  L H  L  
Sbjct: 20  LKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFIEEA----KVMMNLSHEKLVQ 74
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        I +IT++   G L   L +   + F+         +V   +EYL     +
Sbjct: 75  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQFL 133
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+   G V ++DF LS
Sbjct: 134 HRDLAARNCLVNDQGVVKVSDFGLS 158

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E ++ ++L HP +  L        ++CL+ +F  GG L  +L     K    D    +A 
Sbjct: 56  EAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWAV 112
Query: 416 EVVIGLEYLH---CLGIIYRDLKPENIL-LQK-------DGHVVLTDFDLS 455
           ++  G+ YLH    + II+RDLK  NIL LQK       +  + +TDF L+
Sbjct: 113 QIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA 163

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G V   + +G  ++ A+K +++  M     +  A    ++M  L H  L  
Sbjct: 14  LKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFIEEA----KVMMNLSHEKLVQ 68
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        I +IT++   G L   L +   + F+         +V   +EYL     +
Sbjct: 69  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQFL 127
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+   G V ++DF LS
Sbjct: 128 HRDLAARNCLVNDQGVVKVSDFGLS 152

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 13/156 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLN-RNKVHRACIEREIMS 361
           + K I+ LG G  G V L        G GE+ A+KA+++      R+   R   E EI+ 
Sbjct: 9   YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQR---EIEILR 65
Query: 362 LLDHPFLPTLYASF--QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
            L H  +         Q    + L+ ++ P G   +L D  P           +A ++  
Sbjct: 66  TLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLG---SLRDYLPRHCVGLAQLLLFAQQICE 122
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           G+ YLH    I+R L   N+LL  D  V + DF L+
Sbjct: 123 GMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLA 158

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 26  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 80
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 81  VV-SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 139
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 140 LRAANILVGENLVCKVADFGLA 161

>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 315 GCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYAS 374
           G  D  +V+L   +  GE   ++ +      N   V     E  +  L +HP +    A+
Sbjct: 20  GFEDLMTVNLARYKPTGEYVTVRRINLEACSNE-MVTFLQGELHVSKLFNHPNIVPYRAT 78
Query: 375 FQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDL 434
           F     + ++T F   G    L+    M    E +  +    V+  L+Y+H +G ++R +
Sbjct: 79  FIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSV 138
Query: 435 KPENILLQKDGHVVLTDF--DLSFMTSCKPQVFYH 467
           K  +IL+  DG V L+    +LS ++  + Q   H
Sbjct: 139 KASHILISVDGKVYLSGLRSNLSMISHGQRQRVVH 173

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 267 LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 322
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+R+
Sbjct: 323 VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRN 382
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 383 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 424

>pdb|3U87|A Chain A, Structure Of A Chimeric Construct Of Human Ck2alpha And Human Ck2alpha' In Complex With A Non-hydrolysable Atp-analogue Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 13/156 (8%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLN-RNKVHRACIEREIMS 361
           + K I+ LG G  G V L        G GE+ A+KA+++      R+   R   E EI+ 
Sbjct: 10  YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQR---EIEILR 66
Query: 362 LLDHPFLPTLYASF--QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
            L H  +         Q    + L+ ++ P G   +L D  P           +A ++  
Sbjct: 67  TLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLG---SLRDYLPRHCVGLAQLLLFAQQICE 123
Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           G+ YLH    I+R L   N+LL  D  V + DF L+
Sbjct: 124 GMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLA 159

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 27/163 (16%)
Query: 307 HFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + K I+ LG G  G V L        G GE+ A+KA++          HR+  ++EI   
Sbjct: 15  YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADC----GPQHRSGWKQEI--- 67
Query: 363 LDHPFLPTLYASF----------QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
                L TLY             Q    + L+ ++ P G L   L +  + + +      
Sbjct: 68  ---DILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHSIGLAQ---LLL 121
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +A ++  G+ YLH    I+R+L   N+LL  D  V + DF L+
Sbjct: 122 FAQQICEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGDFGLA 164

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 76
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 77  DNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 134
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF  + +   + +  YHA
Sbjct: 135 LEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKE-YHA 178

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + +  F L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILGFGLA 172

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 228 LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 283
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +IT+F   G L   L +   +        + A ++   +EYL     I+R+
Sbjct: 284 VCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRN 343
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 344 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 385

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAM-----EKSVMLNRNKVHRACIE 356
           KI    +K +  LG G   +V+L E        A+KA+     EK   L R        E
Sbjct: 7   KIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKR-------FE 59
Query: 357 REI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ-PMKIFREDSARFY 413
           RE+   S L H  + ++    +      L+ ++  G  L   ++   P+ +   D+A  +
Sbjct: 60  REVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSV---DTAINF 116
Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             +++ G+++ H + I++RD+KP+NIL+  +  + + DF ++
Sbjct: 117 TNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIA 158

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G V   + +G  ++ A+K +++  M     +  A    ++M  L H  L  
Sbjct: 29  LKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFIEEA----KVMMNLSHEKLVQ 83
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        I +IT++   G L   L +   + F+         +V   +EYL     +
Sbjct: 84  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQFL 142
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+   G V ++DF LS
Sbjct: 143 HRDLAARNCLVNDQGVVKVSDFGLS 167

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 76
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 77  DNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 134
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF  + +   + +  YHA
Sbjct: 135 LEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKE-YHA 178

>pdb|2ZJW|A Chain A, Crystal Structure Of Human Ck2 Alpha Complexed With Ellagic Acid Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 127 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 185
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 186 FYHPGQEYNVRVASRYFKGPELLVDYQMY 214

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDH 365
           ++ +  +G G  G V     +  G+  A+K   K +M N  +       REI  + LL H
Sbjct: 20  YEKLAKIGQGTFGEVFKARHRKTGQKVALK---KVLMENEKEGFPITALREIKILQLLKH 76
Query: 366 PFLPTLYASFQTSTH--------ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
             +  L    +T           I L+ DFC   +L  LL    +K    +  R     +
Sbjct: 77  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQM-L 134
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL----SFMTSCKPQVFYHAHVNGF 473
           + GL Y+H   I++RD+K  N+L+ +DG + L DF L    S   + +P  + +  V  +
Sbjct: 135 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVTLW 194
Query: 474 Y 474
           Y
Sbjct: 195 Y 195

>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 337

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDH 365
           ++ +  +G G  G V     +  G+  A+K   K +M N  +       REI  + LL H
Sbjct: 20  YEKLAKIGQGTFGEVFKARHRKTGQKVALK---KVLMENEKEGFPITALREIKILQLLKH 76
Query: 366 PFLPTLYASFQTSTH--------ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
             +  L    +T           I L+ DFC   +L  LL    +K    +  R     +
Sbjct: 77  ENVVNLIEICRTKASPYNRCKASIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQM-L 134
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL----SFMTSCKPQVFYHAHVNGF 473
           + GL Y+H   I++RD+K  N+L+ +DG + L DF L    S   + +P  + +  V  +
Sbjct: 135 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVTLW 194
Query: 474 Y 474
           Y
Sbjct: 195 Y 195

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           +K LG G  G V   + +G  ++ A+K +++  M     +  A    ++M  L H  L  
Sbjct: 29  LKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFIEEA----KVMMNLSHEKLVQ 83
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        I +IT++   G L   L +   + F+         +V   +EYL     +
Sbjct: 84  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQFL 142
Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+   G V ++DF LS
Sbjct: 143 HRDLAARNCLVNDQGVVKVSDFGLS 167

>pdb|1PJK|A Chain A, Crystal Structure Of A C-terminal Deletion Mutant Of Human Protein Kinase Ck2 Catalytic Subunit Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 121 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 179
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 180 FYHPGQEYNVRVASRYFKGPELLVDYQMY 208

>pdb|3BQC|A Chain A, High Ph-Value Crystal Structure Of Emodin In Complex With The Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK LG G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 21  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 78
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 79  DNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 136
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF  + +   + +  YHA
Sbjct: 137 LEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKE-YHA 180

>pdb|3Q9W|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With Emodin At Ph 8.5 Length = 336

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 308 FKPIKPLGCGDTGSVH----LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           FK IK L  G  G+V+    + E +      A+K + ++     NK      E  +M+ +
Sbjct: 24  FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK--EILDEAYVMASV 81
Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           D+P +  L     TST + LI    P G L   + +    I  +     +  ++  G+ Y
Sbjct: 82  DNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQIAKGMNY 139
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
           L    +++RDL   N+L++   HV +TDF L+ +   + +  YHA
Sbjct: 140 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-YHA 183

>pdb|3NGA|A Chain A, Human Ck2 Catalytic Domain In Complex With Cx-4945 Length = 333

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|2R7I|A Chain A, Crystal Structure Of Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|4DGL|C Chain C, Crystal Structure Of The Ck2 Tetrameric Holoenzyme Length = 335

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLRQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + D  L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDAGLA 172

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 390 GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVL 449
           G +L+ LL  Q +     D   ++  +++ GL+Y+H   +++RDLKP N+LL     + +
Sbjct: 129 GADLYKLLKTQHLS---NDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKI 185
Query: 450 TDFDLS 455
            DF L+
Sbjct: 186 CDFGLA 191

>pdb|3H30|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 With 5,6-Dichloro-1-Beta-D- Ribofuranosylbenzimidazole Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|3NSZ|A Chain A, Human Ck2 Catalytic Domain In Complex With Amppn Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 121 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 179
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 180 FYHPGQEYNVRVASRYFKGPELLVDYQMY 208

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDH 365
           ++ +  +G G  G V     +  G+  A+K   K +M N  +       REI  + LL H
Sbjct: 19  YEKLAKIGQGTFGEVFKARHRKTGQKVALK---KVLMENEKEGFPITALREIKILQLLKH 75
Query: 366 PFLPTLYASFQTSTH--------ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
             +  L    +T           I L+ DFC   +L  LL    +K    +  R     +
Sbjct: 76  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQM-L 133
Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL----SFMTSCKPQVFYHAHVNGF 473
           + GL Y+H   I++RD+K  N+L+ +DG + L DF L    S   + +P  + +  V  +
Sbjct: 134 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVTLW 193
Query: 474 Y 474
           Y
Sbjct: 194 Y 194

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 23  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 77
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       +A++  G+ Y+  +  ++RD
Sbjct: 78  VV-SEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRD 136
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 137 LRAANILVGENLVCKVADFGLA 158

>pdb|3MB6|A Chain A, Human Ck2 Catalytic Domain In Complex With A Difurane Derivative Inhibitor (Cpa) Length = 331

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 122 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 180
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 181 FYHPGQEYNVRVASRYFKGPELLVDYQMY 209

>pdb|3Q04|A Chain A, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph 8.5 Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
           KQ  +   +   RFY  E++  L+Y H +GI++RD+KP N+++  + H  L   D     
Sbjct: 120 KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAE 178
Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
              P   Y+  V   YF   + L  Y  Y
Sbjct: 179 FYHPGQEYNVRVASRYFKGPELLVDYQMY 207

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 23  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 77
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       +A++  G+ Y+  +  ++RD
Sbjct: 78  VV-SEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRD 136
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 137 LRAANILVGENLVCKVADFGLA 158

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E ++M  L H  L  LYA   +   I ++T++   G L   L  +  K  R       AA
Sbjct: 230 EAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAA 288
Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++  G+ Y+  +  ++RDL+  NIL+ ++    + DF L 
Sbjct: 289 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLG 328

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  + H  L  LYA
Sbjct: 26  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKIRHEKLVQLYA 80
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 81  VV-SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 139
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 140 LRAANILVGENLVCKVADFGLA 161

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 19/152 (12%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  G V+L   + A +  A+K + +   +  + +    I REI        L  L +
Sbjct: 36  IGRGSYGYVYLAYDKNANKNVAIKKVNR---MFEDLIDCKRILREIT------ILNRLKS 86
Query: 374 SFQTSTHICLI-TDFCPGGELFALL---DKQPMKIFR------EDSARFYAAEVVIGLEY 423
            +    H  +I  D     EL+ +L   D    K+F+      E   +     +++G ++
Sbjct: 87  DYIIRLHDLIIPEDLLKFDELYIVLEIADSDLKKLFKTPIFLTEQHVKTILYNLLLGEKF 146
Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +H  GII+RDLKP N LL +D  V + DF L+
Sbjct: 147 IHESGIIHRDLKPANCLLNQDCSVKICDFGLA 178

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + D  L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDRGLA 172

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 334 YAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPTLYASFQTSTHICLITDFCPGGE 392
           YA+K +EK     R++V R   E E++     H  +  L   F+      L+ +   GG 
Sbjct: 41  YAVKIIEKQPGHIRSRVFR---EVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGS 97
Query: 393 LFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV---L 449
           + + + K+  + F E  A     +V   L++LH  GI +RDLKPENIL +    V    +
Sbjct: 98  ILSHIHKR--RHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKI 155
Query: 450 TDFDLS 455
            DFDL 
Sbjct: 156 CDFDLG 161

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--------- 358
           ++ + P+G G  GSV        G   A+K + +     ++ +H     RE         
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---QSIIHAKRTYRELRLLKHMKH 80
Query: 359 --IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             ++ LLD  F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 81  ENVIGLLD-VFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 133
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H   II+RDLKP N+ + +D  + + D  L+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDGGLA 172

>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1) Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS---LLD 364
           F+ +  LG G  G V  V  +  G LYA+K   +S+   R    RA    E+ S   +  
Sbjct: 59  FQRLSRLGHGSYGEVFKVRSKEDGRLYAVK---RSMSPFRGPKDRARKLAEVGSHEKVGQ 115
Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP    L  +++    + L T+ C G  L    +     +  E     Y  + ++ L +L
Sbjct: 116 HPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWGASL-PEAQVWGYLRDTLLALAHL 173
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
           H  G+++ D+KP NI L   G   L DF L
Sbjct: 174 HSQGLVHLDVKPANIFLGPRGRCKLGDFGL 203

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 21  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 76
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +I +F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 77  VCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD 136
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 178

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 26  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 81
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +I +F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 82  VCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 141
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 183

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHV 470
           +++   +++GL  LH  G+++RDL P NILL  +  + + DF+L+   +        A  
Sbjct: 137 QYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDT--------ADA 188
Query: 471 NGFYFIMYKW 480
           N  +++ ++W
Sbjct: 189 NKTHYVTHRW 198

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 9/167 (5%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 21  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 76
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +I +F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 77  VCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD 136
Query: 434 LKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKW 480
           L   N L+ ++  V + DF LS + +      Y AH    + I  KW
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDT---YTAHAGAKFPI--KW 178

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 192 LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 246
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++ ++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 247 VV-SEEPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 305
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 306 LRAANILVGENLVCKVADFGLA 327

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHV 470
           +++   +++GL  LH  G+++RDL P NILL  +  + + DF+L+   +        A  
Sbjct: 137 QYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDT--------ADA 188
Query: 471 NGFYFIMYKW 480
           N  +++ ++W
Sbjct: 189 NKTHYVTHRW 198

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query: 312 KPLGCGDTGSVHLVELQGAGEL---YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           K +G GD+G V    L+  G+     A+KA++      + +   +  E  IM   DHP +
Sbjct: 55  KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLS--EASIMGQFDHPNI 112
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV-------IGL 421
             L           ++T++   G L   L        R    +F   ++V        G+
Sbjct: 113 IRLEGVVTRGRLAMIVTEYMENGSLDTFL--------RTHDGQFTIMQLVGMLRGVGAGM 164
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKP 462
            YL  LG ++RDL   N+L+  +    ++DF LS +    P
Sbjct: 165 RYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP 205

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 26  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 80
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 81  VV-SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 139
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   NIL+ ++    + DF L+
Sbjct: 140 LAAANILVGENLVCKVADFGLA 161

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 353 ACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
           A  E  ++  L H  + TL+    T   + L+ ++    +L   LD     I    + + 
Sbjct: 47  AIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYL-DKDLKQYLD-DCGNIINMHNVKL 104
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNG 472
           +  +++ GL Y H   +++RDLKP+N+L+ + G + L DF L+   S   + + +  V  
Sbjct: 105 FLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTL 164
Query: 473 FY 474
           +Y
Sbjct: 165 WY 166

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 75/161 (46%), Gaps = 23/161 (14%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAM---EKSVMLNRNKVHRACIEREIMS 361
           +  ++ ++ +G G  G+V   + +   E+ A+K +   +    +  + +   C+ +E   
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE--- 57
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRE-------DSARFYA 414
            L H  +  L+    +   + L+ +FC         D+   K F         +  + + 
Sbjct: 58  -LKHKNIVRLHDVLHSDKKLTLVFEFC---------DQDLKKYFDSCNGDLDPEIVKSFL 107
Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++ GL + H   +++RDLKP+N+L+ ++G + L DF L+
Sbjct: 108 FQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLA 148

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 306 HHFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
             F   + LG G+ GSV   +L+   G+    A+K M K+ ++  + +     E   M  
Sbjct: 23  QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVK-MLKADIIASSDIEEFLREAACMKE 81
Query: 363 LDHPFLPTLYA-SFQTSTHICL-----ITDFCPGGELFALL-----DKQPMKIFREDSAR 411
            DHP +  L   S ++     L     I  F   G+L A L      + P  +  +   R
Sbjct: 82  FDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVR 141
Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           F   ++  G+EYL     I+RDL   N +L +D  V + DF LS
Sbjct: 142 FMV-DIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLS 184

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++G++Y+H  GI++RDLKP N L+ +D  V + DF L+
Sbjct: 165 LLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLA 203

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           +  +F    HIC+  +      L+ L+ K   + F     R +A  ++  L+ LH   II
Sbjct: 164 MLENFTFRNHICMTFELL-SMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRII 222
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTSC 460
           + DLKPENILL++ G   +   D  F +SC
Sbjct: 223 HCDLKPENILLKQQGRSGIKVID--FGSSC 250

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           +  +F    HIC+  +      L+ L+ K   + F     R +A  ++  L+ LH   II
Sbjct: 164 MLENFTFRNHICMTFELL-SMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRII 222
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTSC 460
           + DLKPENILL++ G   +   D  F +SC
Sbjct: 223 HCDLKPENILLKQQGRSGIKVID--FGSSC 250

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ I+ +G G  G V     +  G+  A+K +  +  +  N   R   E +I+    H  
Sbjct: 56  YEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTN-AKRTLRELKILKHFKHDN 114
Query: 368 L--------PTL-YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           +        PT+ Y  F++   + ++ D         +   QP+ +   +  R++  +++
Sbjct: 115 IIAIKDILRPTVPYGEFKS---VYVVLDLMESDLHQIIHSSQPLTL---EHVRYFLYQLL 168
Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            GL+Y+H   +I+RDLKP N+L+ ++  + + DF ++
Sbjct: 169 RGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMA 205

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 26  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 80
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++T++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 81  VV-SEEPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 139
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 140 LRAANILVGENLVCKVADFGLA 161

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 22  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 77
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +I +F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 78  VCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRD 137
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L+ ++  V + DF LS
Sbjct: 138 LAARNCLVGENHLVKVADFGLS 159

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + +   K ++ +G G+ G V L + +G     A+K ++     N         E  +M+ 
Sbjct: 3   LNMKELKLLQTIGKGEFGDVMLGDYRG--NKVAVKCIK-----NDATAQAFLAEASVMTQ 55
Query: 363 LDHPFLPTLYASF-QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           L H  L  L     +    + ++T++   G L   L  +   +   D    ++ +V   +
Sbjct: 56  LRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAM 115
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           EYL     ++RDL   N+L+ +D    ++DF L+
Sbjct: 116 EYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLT 149

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-----MSLLDHPFL 368
           +G G  G VH    QG        AM  ++   +N    +  E+ +     M   DHP +
Sbjct: 398 IGEGQFGDVH----QGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI 453
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVVIGLEYLHC 426
             L     T   + +I + C  GEL + L    ++ F  D A    YA ++   L YL  
Sbjct: 454 VKLIGVI-TENPVWIIMELCTLGELRSFLQ---VRKFSLDLASLILYAYQLSTALAYLES 509
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              ++RD+   N+L+  +  V L DF LS
Sbjct: 510 KRFVHRDIAARNVLVSSNDCVKLGDFGLS 538

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           +  +F    HIC+  +      L+ L+ K   + F     R +A  ++  L+ LH   II
Sbjct: 164 MLENFTFRNHICMTFELL-SMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRII 222
Query: 431 YRDLKPENILLQKDGHVVLTDFDLSFMTSC 460
           + DLKPENILL++ G   +   D  F +SC
Sbjct: 223 HCDLKPENILLKQQGRSGIKVID--FGSSC 250

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 42/185 (22%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
           FK I+ +G G  G V   + +  G+ Y ++         R K +    ERE+ +L  LDH
Sbjct: 14  FKEIELIGSGGFGQVFKAKHRIDGKTYVIR---------RVKYNNEKAEREVKALAKLDH 64
Query: 366 ---------------------------PFLPTLYASFQTSTHICLIT--DFCPGGELFAL 396
                                       + P    +   S   CL    +FC  G L   
Sbjct: 65  VNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQW 124
Query: 397 LDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF 456
           ++K+  +   +  A     ++  G++Y+H   +I+RDLKP NI L     V + DF L  
Sbjct: 125 IEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGL-- 182
Query: 457 MTSCK 461
           +TS K
Sbjct: 183 VTSLK 187

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V+    +G  + Y++    K++  +  +V     E  +M  + HP L  L  
Sbjct: 19  LGGGQYGEVY----EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 74
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                    +I +F   G L   L +   +        + A ++   +EYL     I+RD
Sbjct: 75  VCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD 134
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L+ ++  V + DF LS
Sbjct: 135 LAARNCLVGENHLVKVADFGLS 156

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-----MSLLDHPFL 368
           +G G  G VH    QG        AM  ++   +N    +  E+ +     M   DHP +
Sbjct: 18  IGEGQFGDVH----QGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI 73
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVVIGLEYLHC 426
             L     T   + +I + C  GEL + L    ++ F  D A    YA ++   L YL  
Sbjct: 74  VKLIGVI-TENPVWIIMELCTLGELRSFLQ---VRKFSLDLASLILYAYQLSTALAYLES 129
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              ++RD+   N+L+  +  V L DF LS
Sbjct: 130 KRFVHRDIAARNVLVSSNDCVKLGDFGLS 158

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 345 LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH----ICLITDFCPGGELFALLDKQ 400
           L +++  R   E E +  L HP +   Y S++++      I L+T+    G L   L + 
Sbjct: 64  LTKSERQRFKEEAEXLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELXTSGTLKTYLKR- 122
Query: 401 PMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQK-DGHVVLTDFDLSFM 457
             K+ +    R +  +++ GL++LH     II+RDLK +NI +    G V + D  L+ +
Sbjct: 123 -FKVXKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL-- 368
           I+ +G G  G V     +  G+  A+K +  +  +  N   R   E +I+    H  +  
Sbjct: 60  IETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTN-AKRTLRELKILKHFKHDNIIA 118
Query: 369 ------PTL-YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
                 PT+ Y  F++   + ++ D         +   QP+ +   +  R++  +++ GL
Sbjct: 119 IKDILRPTVPYGEFKS---VYVVLDLMESDLHQIIHSSQPLTL---EHVRYFLYQLLRGL 172
Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +Y+H   +I+RDLKP N+L+ ++  + + DF ++
Sbjct: 173 KYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMA 206

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G+ G VH      + + Y    M K V +          E  I+++  H  +  L+ 
Sbjct: 13  LGRGEFGIVHRCVETSSKKTY----MAKFVKVKGTDQVLVKKEISILNIARHRNILHLHE 68
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
           SF++   + +I +F  G ++F  ++    ++  E     Y  +V   L++LH   I + D
Sbjct: 69  SFESMEELVMIFEFISGLDIFERINTSAFEL-NEREIVSYVHQVCEALQFLHSHNIGHFD 127
Query: 434 LKPENILLQ 442
           ++PENI+ Q
Sbjct: 128 IRPENIIYQ 136

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 26  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 80
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++ ++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 81  VV-SEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 139
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 140 LRAANILVGENLVCKVADFGLA 161

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 26  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 80
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++ ++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 81  VV-SEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 139
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 140 LRAANILVGENLVCKVADFGLA 161

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G V +    G   + A+K ++   M     +  A    ++M  L H  L  LYA
Sbjct: 26  LGQGCFGEVWMGTWNGTTRV-AIKTLKPGTMSPEAFLQEA----QVMKKLRHEKLVQLYA 80
Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
              +   I ++ ++   G L   L  +  K  R       AA++  G+ Y+  +  ++RD
Sbjct: 81  VV-SEEPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 139
Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L+  NIL+ ++    + DF L+
Sbjct: 140 LRAANILVGENLVCKVADFGLA 161

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 331 GELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFLPTLYASFQTSTHICLITDFC 388
           G+ +A+K ++ +   +   +    ++RE  I  +L HP +  L  ++ +   + ++ +F 
Sbjct: 49  GQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFM 108
Query: 389 PGGEL-FALLDKQPMK-IFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL 441
            G +L F ++ +     ++ E  A  Y  +++  L Y H   II+RD+KP  +LL
Sbjct: 109 DGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLL 163

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNG 472
           Y  +++ G+ + H   II+RD+KPENIL+ + G V L DF  +  T   P   Y   V  
Sbjct: 129 YLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFA-RTLAAPGEVYDDEVAT 187
Query: 473 FYFIMYKWLTGYFTY 487
            ++   + L G   Y
Sbjct: 188 RWYRAPELLVGDVKY 202

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 331 GELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFLPTLYASFQTSTHICLITDFC 388
           G+ +A+K ++ +   +   +    ++RE  I  +L HP +  L  ++ +   + ++ +F 
Sbjct: 51  GQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFM 110
Query: 389 PGGEL-FALLDKQPMK-IFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL 441
            G +L F ++ +     ++ E  A  Y  +++  L Y H   II+RD+KP  +LL
Sbjct: 111 DGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLL 165

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 15/149 (10%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-----MSLLDHPFL 368
           +G G  G VH    QG        AM  ++   +N    +  E+ +     M   DHP +
Sbjct: 398 IGEGQFGDVH----QGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI 453
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVVIGLEYLHC 426
             L     T   + +I + C  GEL + L    ++ F  D A    YA ++   L YL  
Sbjct: 454 VKLIGVI-TENPVWIIMELCTLGELRSFLQ---VRKFSLDLASLILYAYQLSTALAYLES 509
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              ++RD+   N+L+     V L DF LS
Sbjct: 510 KRFVHRDIAARNVLVSATDCVKLGDFGLS 538

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
            K ++ LG G  G V +    G  ++ A+K++++  M           E  +M  L H  
Sbjct: 15  LKLVERLGAGQAGEVWMGYYNGHTKV-AVKSLKQGSM----SPDAFLAEANLMKQLQHQR 69
Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI-FREDSARFYAAEVVIGLEYLHC 426
           L  LYA   T   I +IT++   G L   L K P  I    +     AA++  G+ ++  
Sbjct: 70  LVRLYAVV-TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLDMAAQIAEGMAFIEE 127
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I+RDL+  NIL+       + DF L+
Sbjct: 128 RNYIHRDLRAANILVSDTLSCKIADFGLA 156

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-ERE 358
            ++I + + K  + +G G+ G V    L+  G+  +  A++        +  R  + E  
Sbjct: 8   AKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEAS 67
Query: 359 IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           IM   +HP +  L      S  + ++T+F   G L + L        R +  +F   ++V
Sbjct: 68  IMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFL--------RLNDGQFTVIQLV 119
Query: 419 -------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-FMTSCKPQVFYHAHV 470
                   G+ YL  +  ++RDL   NIL+  +    ++DF LS F+        Y + +
Sbjct: 120 GMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSL 179
Query: 471 NG 472
            G
Sbjct: 180 GG 181

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTD 451
           +L+ LL  Q +     D   ++  +++ GL+Y+H   +++RDLKP N+LL     + + D
Sbjct: 113 DLYKLLKTQHLS---NDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTSDLKICD 169
Query: 452 FDLS 455
           F L+
Sbjct: 170 FGLA 173

>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From Mycobacterium Tuberculosis In Complex With Tetrahydrobenzothiophene Ax20017 Length = 681

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKD 444
           Y  E++  L YLH +G++Y DLKPENI+L ++
Sbjct: 187 YLLEILPALSYLHSIGLVYNDLKPENIMLTEE 218

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           +G G  G V+L   +   +  A+K + + +  +     R   E  I++ L   ++  LY 
Sbjct: 34  IGRGSYGYVYLAYDKNTEKNVAIKKVNR-MFEDLIDCKRILREITILNRLKSDYIIRLYD 92
Query: 374 SFQTSTHICLITDFCPGGELFALL---DKQPMKIFR------EDSARFYAAEVVIGLEYL 424
                  + +  D     EL+ +L   D    K+F+      E+  +     +++G  ++
Sbjct: 93  -------LIIPDDLLKFDELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFI 145
Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H  GII+RDLKP N LL +D  V + DF L+
Sbjct: 146 HESGIIHRDLKPANCLLNQDCSVKVCDFGLA 176

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 75/161 (46%), Gaps = 23/161 (14%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAM---EKSVMLNRNKVHRACIEREIMS 361
           +  ++ ++ +G G  G+V   + +   E+ A+K +   +    +  + +   C+ +E   
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE--- 57
Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRE-------DSARFYA 414
            L H  +  L+    +   + L+ +FC         D+   K F         +  + + 
Sbjct: 58  -LKHKNIVRLHDVLHSDKKLTLVFEFC---------DQDLKKYFDSCNGDLDPEIVKSFL 107
Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++ GL + H   +++RDLKP+N+L+ ++G + L +F L+
Sbjct: 108 FQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLA 148

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 15/149 (10%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-----MSLLDHPFL 368
           +G G  G VH    QG        AM  ++   +N    +  E+ +     M   DHP +
Sbjct: 18  IGEGQFGDVH----QGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI 73
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVVIGLEYLHC 426
             L     T   + +I + C  GEL + L    ++ F  D A    YA ++   L YL  
Sbjct: 74  VKLIGVI-TENPVWIIMELCTLGELRSFLQ---VRKFSLDLASLILYAYQLSTALAYLES 129
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              ++RD+   N+L+     V L DF LS
Sbjct: 130 KRFVHRDIAARNVLVSATDCVKLGDFGLS 158

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN--RNKVHRACI-EREIMSLLDHPF- 367
           KPLG G  G V   +  G  +    + +   ++     +  HRA + E +I+  + H   
Sbjct: 24  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 83
Query: 368 -LPTLYASFQTSTHICLITDFCPGGELFALLDKQ-----PMKIFREDSAR---------F 412
            +  L A  +    + +IT+FC  G L   L  +     P K+  ED  +          
Sbjct: 84  VVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC 143
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           Y+ +V  G+E+L     I+RDL   NILL +   V + DF L+
Sbjct: 144 YSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA 186

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL-- 362
           L  F+PI+ LG G  G V   + +     YA+K     + L   ++ R  + RE+ +L  
Sbjct: 4   LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIK----RIRLPNRELAREKVMREVKALAK 59
Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELF---ALLDKQPMKIF---------REDSA 410
           L+HP +   + ++        +    P   L+    L  K+ +K +         RE S 
Sbjct: 60  LEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSV 119
Query: 411 RFYA-AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
             +   ++   +E+LH  G+++RDLKP NI    D  V + DF L
Sbjct: 120 CLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGL 164

>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo Sapiens Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL-QKDGHVVLTDFDLSFM 457
           KQ  +I  +   RFY  E++  L+Y H  GI++RD+KP N+++  +   + L D+ L+  
Sbjct: 123 KQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHQQKKLRLIDWGLA-- 180
Query: 458 TSCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
               P   Y+  V   YF   + L  Y  Y
Sbjct: 181 EFYHPAQEYNVRVASRYFKGPELLVDYQMY 210

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-----MSLLDHPFL 368
           +G G  G VH    QG        AM  ++   +N    +  E+ +     M   DHP +
Sbjct: 18  IGEGQFGDVH----QGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI 73
Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVVIGLEYLHC 426
             L     T   + +I + C  GEL + L    ++ +  D A    YA ++   L YL  
Sbjct: 74  VKLIGVI-TENPVWIIMELCTLGELRSFLQ---VRKYSLDLASLILYAYQLSTALAYLES 129
Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              ++RD+   N+L+  +  V L DF LS
Sbjct: 130 KRFVHRDIAARNVLVSSNDCVKLGDFGLS 158

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-ERE 358
            ++I + + K  + +G G+ G V    L+  G+  +  A++        +  R  + E  
Sbjct: 10  AKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEAS 69
Query: 359 IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           IM   +HP +  L      S  + ++T+F   G L + L        R +  +F   ++V
Sbjct: 70  IMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFL--------RLNDGQFTVIQLV 121
Query: 419 -------IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                   G+ YL  +  ++RDL   NIL+  +    ++DF LS
Sbjct: 122 GMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLS 165

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN--RNKVHRACI-EREIMSLLDHPF- 367
           KPLG G  G V   +  G  +    + +   ++     +  HRA + E +I+  + H   
Sbjct: 24  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 83
Query: 368 -LPTLYASFQTSTHICLITDFCPGGELFALLDKQ-----PMKIFREDSAR---------F 412
            +  L A  +    + +IT+FC  G L   L  +     P K+  ED  +          
Sbjct: 84  VVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC 143
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           Y+ +V  G+E+L     I+RDL   NILL +   V + DF L+
Sbjct: 144 YSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA 186

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN--RNKVHRACI-EREIMSLLDHPF- 367
           KPLG G  G V   +  G  +    + +   ++     +  HRA + E +I+  + H   
Sbjct: 24  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 83
Query: 368 -LPTLYASFQTSTHICLITDFCPGGELFALLDKQ-----PMKIFREDSAR---------F 412
            +  L A  +    + +IT+FC  G L   L  +     P K+  ED  +          
Sbjct: 84  VVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC 143
Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           Y+ +V  G+E+L     I+RDL   NILL +   V + DF L+
Sbjct: 144 YSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	489
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	4e-65
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-62
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-62
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	5e-62
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-61
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-61
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	5e-61
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	9e-61
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-60
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-60
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	3e-60
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	6e-60
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	1e-59
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	2e-59
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	2e-59
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	4e-59
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-58
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-58
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	8e-58
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	7e-56
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	8e-56
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-55
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	4e-54
2v0u_A	146	NPH1-1, LOV2; kinase, transferase, ATP-binding, se	2e-52
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-49
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-49
3ue6_A	166	Aureochrome1; PAS/LOV domain, FMN-binding blue-lig	5e-47
3p7n_A	258	Sensor histidine kinase; LOV domain, light-activat	6e-47
4eet_B	115	Phototropin-2; LOV, blue light photoreceptor, sign	9e-47
2z6d_A	130	Phototropin-2; PAS-fold, LOV-fold, alternative spl	5e-45
3d72_A	149	Vivid PAS protein VVD; circadian, photoreceptor, b	1e-43
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	3e-43
2l0w_A	138	Potassium voltage-gated channel, subfamily H (EAG	8e-43
1n9l_A	109	PHOT-LOV1, putative blue light receptor; phototrop	5e-42
3sw1_A	162	Sensory box protein; light-oxygen-voltage, LOV, PA	6e-42
3t50_A	128	Blue-light-activated histidine kinase; PAS superfa	1e-41
2pr5_A	132	Blue-light photoreceptor; light-oxygen-voltage, LO	2e-40
1byw_A	110	Protein (human ERG potassium channel); PAS domain,	1e-39
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-39
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-38
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-37
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	8e-36
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	8e-36
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-35
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-34
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-34
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-33
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-33
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-32
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-32
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-32
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	6e-32
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	7e-32
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-31
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	5e-31
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	6e-31
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-31
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	6e-31
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	8e-31
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-30
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-30
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-30
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-30
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-30
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-30
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-30
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-30
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-30
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-30
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	3e-30
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	3e-30
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	4e-30
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	6e-30
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	6e-30
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	7e-30
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	7e-30
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	9e-30
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	9e-30
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	1e-29
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	1e-29
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-29
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-29
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-29
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-29
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-29
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	5e-29
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-29
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-28
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	4e-28
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	4e-28
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	5e-28
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	8e-28
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-27
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-27
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	4e-27
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	7e-27
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	7e-27
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	5e-26
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	6e-26
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	8e-26
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	9e-26
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-25
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	3e-25
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	9e-25
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-24
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-24
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-23
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-23
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	7e-23
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-22
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-22
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-22
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-22
3an0_A	340	Dual specificity mitogen-activated protein kinase;	4e-22
3aln_A	327	Dual specificity mitogen-activated protein kinase;	9e-22
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-21
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-21
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-21
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-21
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-21
3fme_A	290	Dual specificity mitogen-activated protein kinase;	5e-21
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	9e-21
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	1e-20
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-20
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-20
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-19
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-19
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-19
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-19
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	4e-19
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-19
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-18
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-18
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	5e-18
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-17
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-17
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-17
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	6e-17
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-16
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-16
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-15
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-15
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	7e-14
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-13
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-13
3uqc_A	286	Probable conserved transmembrane protein; structur	2e-13
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-13
3ewk_A	227	Sensor protein; PAS domain, alpha/beta fold, kinas	1e-12
3ewk_A	227	Sensor protein; PAS domain, alpha/beta fold, kinas	7e-10
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-12
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-12
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	4e-12
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	4e-12
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	6e-12
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	6e-12
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	1e-11
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-11
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-11
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-11
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	6e-11
3niz_A	311	Rhodanese family protein; structural genomics, str	7e-11
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	8e-11
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	9e-11
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-10
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-10
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	1e-10
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-10
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-10
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-10
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-10
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-10
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	3e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	3e-10
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	4e-10
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	5e-10
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	6e-10
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	9e-10
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	9e-10
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-09
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-09
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-09
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-09
3lyx_A	124	Sensory BOX/ggdef domain protein; structural genom	2e-09
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	3e-09
3ork_A	311	Serine/threonine protein kinase; structural genomi	3e-09
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	3e-09
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-09
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	3e-09
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	4e-09
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-09
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	4e-09
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	5e-09
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-09
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	5e-09
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	5e-09
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	5e-09
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	6e-09
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	8e-09
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	8e-09
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-08
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-08
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-08
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-08
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-08
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-08
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-08
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	3e-08
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-08
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-08
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	4e-08
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	4e-08
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	5e-08
3rp9_A	458	Mitogen-activated protein kinase; structural genom	5e-08
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	5e-08
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	5e-08
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	6e-08
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	6e-08
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	6e-08
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	7e-08
2gj3_A	120	Nitrogen fixation regulatory protein; PAS domain,	8e-08
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	9e-08
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-07
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	1e-07
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	1e-07
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-07
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-07
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	3e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	4e-07
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	5e-07
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	7e-07
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-06
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-06
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	3e-06
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	5e-06
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	7e-06
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-05
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-05
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-05
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-05
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-05
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	1e-04
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-04
3mqq_A	120	Transcriptional regulator, LUXR family; PAS domain	2e-04
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	4e-04

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  212 bits (541), Expect = 4e-65
 Identities = 66/174 (37%), Positives = 86/174 (49%), Gaps = 2/174 (1%)

Query: 282 PHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEK 341
              R  +  +   +      K     FK  K LG G   +V L         YA+K +EK
Sbjct: 6   AEPRPGAGSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEK 65

Query: 342 SVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQP 401
             ++  NKV     ER++MS LDHPF   LY +FQ    +     +   GEL   + K  
Sbjct: 66  RHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI- 124

Query: 402 MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              F E   RFY AE+V  LEYLH  GII+RDLKPENILL +D H+ +TDF  +
Sbjct: 125 -GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTA 177

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score =  208 bits (532), Expect = 1e-62
 Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 3/154 (1%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           ++    ++ +K +G G  G V LV  +   ++YAMK + K  M+ R+       ER+IM+
Sbjct: 65  RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMA 124

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
             + P++  L+ +FQ   ++ ++ ++ PGG+L  L+         E  ARFY AEVV+ L
Sbjct: 125 FANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD---VPEKWARFYTAEVVLAL 181

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +H +G I+RD+KP+N+LL K GH+ L DF   
Sbjct: 182 DAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTC 215

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  208 bits (531), Expect = 1e-62
 Identities = 53/154 (34%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           ++    F+ +K +G G    V +V+++  G++YAMK M K  ML R +V     ER+++ 
Sbjct: 57  RLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLV 116

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
             D  ++  L+ +FQ   ++ L+ ++  GG+L  LL K   +    + ARFY AE+V+ +
Sbjct: 117 NGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAI 175

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +H LG ++RD+KP+NILL + GH+ L DF   
Sbjct: 176 DSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSC 209

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  204 bits (521), Expect = 5e-62
 Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 6/165 (3%)

Query: 294 QKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVE---LQGAGELYAMKAMEKSVMLNRNKV 350
             +    EK     F+ +K LG G  G V LV+      A +LYAMK ++K+ +  R++V
Sbjct: 12  HHVKEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRV 71

Query: 351 HRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSA 410
               +ER+I+  ++HPF+  L+ +FQT   + LI DF  GG+LF  L K+   +F E+  
Sbjct: 72  R-TKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDV 128

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +FY AE+ + L++LH LGIIYRDLKPENILL ++GH+ LTDF LS
Sbjct: 129 KFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  203 bits (518), Expect = 1e-61
 Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 2/154 (1%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K  L  F+ ++ LG G  G VHL+  +  G  YAMK ++K +++   +V     ER ++S
Sbjct: 2   KYSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLS 61

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           ++ HPF+  ++ +FQ +  I +I D+  GGELF+LL K   + F    A+FYAAEV + L
Sbjct: 62  IVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLAL 119

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           EYLH   IIYRDLKPENILL K+GH+ +TDF  +
Sbjct: 120 EYLHSKDIIYRDLKPENILLDKNGHIKITDFGFA 153

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  205 bits (524), Expect = 3e-61
 Identities = 54/155 (34%), Positives = 91/155 (58%), Gaps = 1/155 (0%)

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM 360
            ++    F+ +K +G G  G V +V+L+ A +++AMK + K  ML R +      ER+++
Sbjct: 69  MRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVL 128

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
              D  ++ TL+ +FQ   ++ L+ D+  GG+L  LL K       E+ ARFY AE+VI 
Sbjct: 129 VNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIA 187

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ +H L  ++RD+KP+NIL+  +GH+ L DF   
Sbjct: 188 IDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSC 222

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  202 bits (515), Expect = 5e-61
 Identities = 68/167 (40%), Positives = 96/167 (57%), Gaps = 8/167 (4%)

Query: 294 QKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVE---LQGAGELYAMKAMEKSVMLNRNKV 350
             +    EKI    F+ ++ LG G  G V  V        G+++AMK ++K++++   K 
Sbjct: 5   TSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAK- 63

Query: 351 HRACI--EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRED 408
             A    ER I+  + HPF+  L  +FQT   + LI ++  GGELF  L+++   IF ED
Sbjct: 64  DTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE--GIFMED 121

Query: 409 SARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +A FY AE+ + L +LH  GIIYRDLKPENI+L   GHV LTDF L 
Sbjct: 122 TACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLC 168

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  201 bits (514), Expect = 9e-61
 Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 7/172 (4%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ ++ F  +K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++ 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  +FQT   +C + ++  GGELF  L ++  ++F E+ ARFY AE+V  L
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSAL 118

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
           EYLH   ++YRD+K EN++L KDGH+ +TDF L     CK  +   A +  F
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL-----CKEGISDGATMKTF 165

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  202 bits (516), Expect = 1e-60
 Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 2/157 (1%)

Query: 299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE 358
             E +   HF+ ++ +G G  G V +V+     ++YAMK M K   + RN+V     E +
Sbjct: 8   ENEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQ 67

Query: 359 IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           IM  L+HPFL  L+ SFQ    + ++ D   GG+L   L +     F+E++ + +  E+V
Sbjct: 68  IMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELV 125

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + L+YL    II+RD+KP+NILL + GHV +TDF+++
Sbjct: 126 MALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIA 162

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  200 bits (509), Expect = 3e-60
 Identities = 110/269 (40%), Positives = 142/269 (52%), Gaps = 50/269 (18%)

Query: 58  ERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSF 117
                      LATTLERIEKNFVITDPR+PDNPIIFASDSFL+LTEY+REEILGRN  F
Sbjct: 2   RGSHHHHHHGSLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARF 61

Query: 118 LELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAV 177
           L+  E                                          +D+ATV KIRDA+
Sbjct: 62  LQGPE------------------------------------------TDRATVRKIRDAI 79

Query: 178 REQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEK 237
             Q E+TVQLINYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG++HV     R    
Sbjct: 80  DNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVM 139

Query: 238 TEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNS-SWIAIQKI 296
             +++A+ +   A+ + +    + D  +    L   ++   FP  +      ++ A   +
Sbjct: 140 LIKKTAENIDEAAKELIK-CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 198

Query: 297 TGSGEKIGL------HHFKPIKPLGCGDT 319
            G    +GL        +  ++PL    T
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  200 bits (512), Expect = 3e-60
 Identities = 72/197 (36%), Positives = 98/197 (49%), Gaps = 12/197 (6%)

Query: 275 SQPVFPRPH----KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGA 330
           SQP  P           +    I     S        F  +K +G G  G V L   +  
Sbjct: 3   SQPQEPELMNANPAPPPAPSQQINLGPSSNPHAKPSDFHFLKVIGKGSFGKVLLARHKAE 62

Query: 331 GELYAMKAMEKSVMLNRNKVHRACIEREIMSL-LDHPFLPTLYASFQTSTHICLITDFCP 389
              YA+K ++K  +L + +      ER ++   + HPFL  L+ SFQT+  +  + D+  
Sbjct: 63  EVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYIN 122

Query: 390 GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVL 449
           GGELF  L ++  + F E  ARFYAAE+   L YLH L I+YRDLKPENILL   GH+VL
Sbjct: 123 GGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVL 180

Query: 450 TDFDLSFMTSCKPQVFY 466
           TDF L     CK  + +
Sbjct: 181 TDFGL-----CKENIEH 192

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  199 bits (508), Expect = 6e-60
 Identities = 55/159 (34%), Positives = 93/159 (58%), Gaps = 3/159 (1%)

Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           G+ + +GL  F  ++ +G G    V LV L+    +YAMK ++K ++ +   +     E+
Sbjct: 1   GAMDPLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEK 60

Query: 358 EIMSL-LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
            +     +HPFL  L++ FQT + +  + ++  GG+L   + +Q  +   E+ ARFY+AE
Sbjct: 61  HVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAE 118

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + + L YLH  GIIYRDLK +N+LL  +GH+ LTD+ + 
Sbjct: 119 ISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 157

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  199 bits (507), Expect = 1e-59
 Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 7/170 (4%)

Query: 291 IAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVE---LQGAGELYAMKAMEKSVMLNR 347
           +    +TG  EK+G+ +F+ +K LG G  G V LV        G+LYAMK ++K+ ++ +
Sbjct: 39  LRTANLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQK 98

Query: 348 NK-VHRACIEREIMSLLDH-PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIF 405
            K       ER+++  +   PFL TL+ +FQT T + LI D+  GGELF  L ++  + F
Sbjct: 99  AKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR--ERF 156

Query: 406 REDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            E   + Y  E+V+ LE+LH LGIIYRD+K ENILL  +GHVVLTDF LS
Sbjct: 157 TEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 206

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  198 bits (506), Expect = 2e-59
 Identities = 59/180 (32%), Positives = 101/180 (56%), Gaps = 8/180 (4%)

Query: 288 SSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR 347
           ++ ++     G+ +++ L  F  +  LG G  G V L E +G  ELYA+K ++K V++  
Sbjct: 2   TNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQD 61

Query: 348 NKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR 406
           + V    +E+ +++L    PFL  L++ FQT   +  + ++  GG+L   + +     F+
Sbjct: 62  DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV--GRFK 119

Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           E  A FYAAE+ IGL +L   GIIYRDLK +N++L  +GH+ + DF +     CK  ++ 
Sbjct: 120 EPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM-----CKENIWD 174

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  198 bits (505), Expect = 2e-59
 Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 8/174 (4%)

Query: 294 QKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRA 353
           ++      K+ +  F   K LG G  G V L E +   + +A+KA++K V+L  + V   
Sbjct: 5   KERPSLQIKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECT 64

Query: 354 CIEREIMSL-LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
            +E+ ++SL  +HPFL  ++ +FQT  ++  + ++  GG+L   +  Q    F    A F
Sbjct: 65  MVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHI--QSCHKFDLSRATF 122

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           YAAE+++GL++LH  GI+YRDLK +NILL KDGH+ + DF +     CK  +  
Sbjct: 123 YAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGM-----CKENMLG 171

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  197 bits (503), Expect = 4e-59
 Identities = 59/157 (37%), Positives = 95/157 (60%), Gaps = 2/157 (1%)

Query: 299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE 358
           S     L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E+ 
Sbjct: 34  SQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKR 93

Query: 359 IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           I+  ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +     F E  ARFYAA++V
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIV 151

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  EYLH L +IYRDLKPEN+L+ + G++ +TDF  +
Sbjct: 152 LTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  196 bits (500), Expect = 1e-58
 Identities = 66/171 (38%), Positives = 98/171 (57%), Gaps = 8/171 (4%)

Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
             S  ++G+ +F+ I+ LG G  G V L  ++  G+LYA+K ++K V+L  + V     E
Sbjct: 14  VNSSNRLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTE 73

Query: 357 REIMSL-LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           + I+SL  +HPFL  L+  FQT   +  + +F  GG+L   + K   + F E  ARFYAA
Sbjct: 74  KRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAA 131

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
           E++  L +LH  GIIYRDLK +N+LL  +GH  L DF +     CK  +  
Sbjct: 132 EIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGM-----CKEGICN 177

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  196 bits (499), Expect = 5e-58
 Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 3/177 (1%)

Query: 280 PRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAM 339
                 +    +  ++   +   +GL  F  ++ +G G    V LV L+    +YAM+ +
Sbjct: 26  MGSGIEEEKEAMNTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVV 85

Query: 340 EKSVMLNRNKVHRACIEREIMSL-LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLD 398
           +K ++ +   +     E+ +     +HPFL  L++ FQT + +  + ++  GG+L   + 
Sbjct: 86  KKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ 145

Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +Q  +   E+ ARFY+AE+ + L YLH  GIIYRDLK +N+LL  +GH+ LTD+ + 
Sbjct: 146 RQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 200

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  196 bits (501), Expect = 8e-58
 Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 249 TAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHF 308
           T E   E    +       +   A         P     +  + +  +     ++ ++ F
Sbjct: 92  TPEEREEWTTAIQTVADGLKKQAAAEMDFRSGSPSDNSGAEEMEV-SLAKPKHRVTMNEF 150

Query: 309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFL 368
           + +K LG G  G V LV+ +  G  YAMK ++K V++ +++V     E  ++    HPFL
Sbjct: 151 EYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFL 210

Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-L 427
             L  SFQT   +C + ++  GGELF  L ++  ++F ED ARFY AE+V  L+YLH   
Sbjct: 211 TALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEK 268

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
            ++YRDLK EN++L KDGH+ +TDF L     CK  +   A +  F
Sbjct: 269 NVVYRDLKLENLMLDKDGHIKITDFGL-----CKEGIKDGATMKTF 309

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  194 bits (495), Expect = 7e-56
 Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 2/228 (0%)

Query: 230 LRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSS 289
            +N LS        ++ +    N  + + + P  +L  E     H            +S 
Sbjct: 106 TQNFLSHTGPDLIPEVPRQLVTNCTQRLEQGPCKDLFQELTRLTHEYLSVAPFADYLDSI 165

Query: 290 WIA--IQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR 347
           +    +Q      + +  + F+  + LG G  G V   +++  G++YA K +EK  +  R
Sbjct: 166 YFNRFLQWKWLERQPVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKR 225

Query: 348 NKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFRE 407
                A  E++I+  ++  F+ +L  +++T   +CL+     GG+L   +       F E
Sbjct: 226 KGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPE 285

Query: 408 DSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             A FYAAE+  GLE LH   I+YRDLKPENILL   GH+ ++D  L+
Sbjct: 286 ARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLA 333

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  193 bits (493), Expect = 8e-56
 Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM 360
           + +G   F   + LG G  G V   +++  G+LYA K + K  +  R     A +E++I+
Sbjct: 180 QPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKIL 239

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVV 418
           + +   F+ +L  +F+T T +CL+     GG++   +    +    F+E  A FY A++V
Sbjct: 240 AKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIV 299

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
            GLE+LH   IIYRDLKPEN+LL  DG+V ++D  L                 G+
Sbjct: 300 SGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGL-----AVELKAGQTKTKGY 349

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  195 bits (497), Expect = 2e-55
 Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 13/250 (5%)

Query: 230 LRNRLSEKTEQQSAKIVKATAENVNEAV-----RELPDANLRPEDLWAIHSQPVFPRPHK 284
           L   +SE  +       K  ++   E        E  + N      +         +  +
Sbjct: 260 LSFGISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEELRQKFERAKIGQGTKAPE 319

Query: 285 RDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM 344
              ++ I+     G+ +++ L  F  +  LG G  G V L E +G  ELYA+K ++K V+
Sbjct: 320 EKTANTISKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVV 379

Query: 345 LNRNKVHRACIEREIMSL-LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK 403
           +  + V    +E+ +++L    PFL  L++ FQT   +  + ++  GG+L   + +    
Sbjct: 380 IQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV--G 437

Query: 404 IFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQ 463
            F+E  A FYAAE+ IGL +L   GIIYRDLK +N++L  +GH+ + DF +     CK  
Sbjct: 438 RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM-----CKEN 492

Query: 464 VFYHAHVNGF 473
           ++       F
Sbjct: 493 IWDGVTTKTF 502

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  192 bits (489), Expect = 4e-54
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 9/235 (3%)

Query: 228 EPLRNRLSEKTEQQSAKIVKATAENVNEAVREL-PDANLRPEDLWAIH---SQPVFPRPH 283
           E     + ++    S    K+  E+V   + +     +L    +  I       VF +  
Sbjct: 107 EIFDTYIMKELLACSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQNLRGDVFQKFI 166

Query: 284 KRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV 343
           + D  +     K       + ++ F   + +G G  G V+       G++YAMK ++K  
Sbjct: 167 ESDKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKR 226

Query: 344 MLNRNKVHRACIEREIMSLL---DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ 400
           +  +     A  ER ++SL+   D PF+  +  +F T   +  I D   GG+L   L + 
Sbjct: 227 IKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQ- 285

Query: 401 PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              +F E   RFYAAE+++GLE++H   ++YRDLKP NILL + GHV ++D  L+
Sbjct: 286 -HGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A* Length = 146

 Score =  173 bits (440), Expect = 2e-52
 Identities = 107/194 (55%), Positives = 125/194 (64%), Gaps = 53/194 (27%)

Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFL--ELTEYTRE 126
           LATTLERIEKNFVITDPR+PDNPIIFASDSFL+LTEY+REEILGRNC FL    T     
Sbjct: 4   LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPET----- 58

Query: 127 EILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQ 186
                                                  D+ATV KIRDA+  Q E+TVQ
Sbjct: 59  ---------------------------------------DRATVRKIRDAIDNQTEVTVQ 79

Query: 187 LINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIV 246
           LINYTKSGKKFWNLFHLQPMRD KG++QYFIGVQLDG++HV        +  E++   ++
Sbjct: 80  LINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-------DAAEREGVMLI 132

Query: 247 KATAENVNEAVREL 260
           K TAEN++EA +EL
Sbjct: 133 KKTAENIDEAAKEL 146

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  170 bits (433), Expect = 1e-49
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 2/157 (1%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K  +  F   +PLG G  G+V+L   +    + A+K + KS +      H+   E EI S
Sbjct: 10  KFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQS 69

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            L HP +  +Y  F     I L+ +F P GEL+  L K     F E  +  +  E+   L
Sbjct: 70  HLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH--GRFDEQRSATFMEELADAL 127

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
            Y H   +I+RD+KPEN+L+   G + + DF  S   
Sbjct: 128 HYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHA 164

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  169 bits (430), Expect = 3e-49
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 2/157 (1%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           +  L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S
Sbjct: 5   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 64

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            L HP +  LY  F  +T + LI ++ P G ++  L K     F E     Y  E+   L
Sbjct: 65  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANAL 122

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
            Y H   +I+RD+KPEN+LL   G + + DF  S   
Sbjct: 123 SYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHA 159

>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A* Length = 166

 Score =  159 bits (405), Expect = 5e-47
 Identities = 61/208 (29%), Positives = 90/208 (43%), Gaps = 48/208 (23%)

Query: 36  PSIAPEVFMTKDLKWTDSWDRAERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFA 95
            S+  +     D   TD+  +A R  +      L   L+  ++NFVITD  +PDNPI++A
Sbjct: 5   DSLIAQCSPEADTLLTDNPSKANRILE-DPDYSLVKALQMAQQNFVITDASLPDNPIVYA 63

Query: 96  SDSFLELTEYTREEILGRNCSFL--ELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVY 153
           S  FL LT Y+ ++ILGRNC FL    T                                
Sbjct: 64  SRGFLTLTGYSLDQILGRNCRFLQGPET-------------------------------- 91

Query: 154 NFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGEL 213
                       D   V KIR+A+ +  + +V L+NY + G  FWNLF +  +RD KG +
Sbjct: 92  ------------DPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNI 139

Query: 214 QYFIGVQLDGSDHVEPLRNRLSEKTEQQ 241
             ++GVQ   S+    L     +  E +
Sbjct: 140 VNYVGVQSKVSEDYAKLL-VNEQNIEYK 166

>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis} Length = 258

 Score =  162 bits (411), Expect = 6e-47
 Identities = 62/299 (20%), Positives = 104/299 (34%), Gaps = 69/299 (23%)

Query: 10  SRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDIRQGIDL 69
            ++ GR+         P   G+  P                     R E +   +    +
Sbjct: 18  GQQMGRDLYDDDDKDHPFTMGQDRPIDGSGAP---------GADDTRVEVQPPAQW---V 65

Query: 70  ATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEIL 129
              +E      V++DPR+ DNP+I  + +F +LT Y+ EE +GRNC FL           
Sbjct: 66  LDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLA---------- 115

Query: 130 GRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLIN 189
           G                                  ++     KIR  VRE + + V+++N
Sbjct: 116 GSG--------------------------------TEPWLTDKIRQGVREHKPVLVEILN 143

Query: 190 YTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKAT 249
           Y K G  F N   + P+ D   EL YF+G Q++  D              ++ A  +  T
Sbjct: 144 YKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPN-----MGMARRERAAEMLKT 198

Query: 250 AENVNEAVRELPDANLRPEDLWAI----------HSQPVFPRPHKRDNSSWIAIQKITG 298
                  V  L  + LR +++ A           H   V  + + + ++  + I    G
Sbjct: 199 LSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKLNLKTSADLVRIAVEAG 257

>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A* Length = 115

 Score =  156 bits (398), Expect = 9e-47
 Identities = 95/157 (60%), Positives = 100/157 (63%), Gaps = 46/157 (29%)

Query: 73  LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFL--ELTEYTREEILG 130
            E IEKNFVITDPR+PDNPIIFASD FLELTEY+REEILGRN  FL    T         
Sbjct: 3   PEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPET--------- 53

Query: 131 RNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINY 190
                                              DQATV KIRDA+R+QRE TVQLINY
Sbjct: 54  -----------------------------------DQATVQKIRDAIRDQRETTVQLINY 78

Query: 191 TKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV 227
           TKSGKKFWNL HLQP+RD KGELQYFIGVQLDGSDHV
Sbjct: 79  TKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115

>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A* Length = 130

 Score =  153 bits (388), Expect = 5e-45
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 46/172 (26%)

Query: 64  RQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFL--ELT 121
           R   +L T L  +++ FV++D   P  PI++AS  F  +T Y+ +EI+GRNC FL    T
Sbjct: 3   RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 62

Query: 122 EYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR 181
                                                       D+  V+KIRD V+  +
Sbjct: 63  --------------------------------------------DKNEVAKIRDCVKNGK 78

Query: 182 EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNR 233
               +L+NY K G  FWNL  + P++D +G    FIG+Q++ S + E + ++
Sbjct: 79  SYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDK 130

>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B* Length = 149

 Score =  149 bits (379), Expect = 1e-43
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 46/172 (26%)

Query: 66  GIDLATTLERI--EKN-------------FVITDPRIPDNPIIFASDSFLELTEYTREEI 110
           G D+   L +I    N              ++ D +  D PI++AS++FL +T Y+  E+
Sbjct: 9   GYDIMGYLIQIMNRPNPQVELGPVDTSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEV 68

Query: 111 LGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATV 170
           LGRNC FL                                               D  T+
Sbjct: 69  LGRNCRFL-------------------------------QSPDGMVKPKSTRKYVDSNTI 97

Query: 171 SKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD 222
           + +R A+    E+ V+++N+ K+G++F N   + P+RD  GE +Y +G Q +
Sbjct: 98  NTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  155 bits (393), Expect = 3e-43
 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 30/202 (14%)

Query: 287 NSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN 346
           N S +         +   ++ ++ I+ L  G    + L E     + YA+K  EKS++  
Sbjct: 12  NYSNLIYLNKYVKEKDKYINDYRIIRTLNQGKFNKIILCEKDN--KFYALKKYEKSLLEK 69

Query: 347 RNKVHRAC------------IEREI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGE 392
           +    ++              + E+  ++ + + +  T          + +I ++     
Sbjct: 70  KRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDS 129

Query: 393 LFALL------DKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDG 445
           +          DK           +     V+    Y+H    I +RD+KP NIL+ K+G
Sbjct: 130 ILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNG 189

Query: 446 HVVLTDFDLS-------FMTSC 460
            V L+DF  S          S 
Sbjct: 190 RVKLSDFGESEYMVDKKIKGSR 211

>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A Length = 138

 Score =  147 bits (373), Expect = 8e-43
 Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 51/175 (29%)

Query: 58  ERERDIRQGIDLATTLERIEK---NFVITDPRIPDNPIIFASDSFLELTEYTREEILGR- 113
            R     Q   L T + + E     F+I + R+ +  +I+ +D F EL  Y+R E++ R 
Sbjct: 7   RRGHVAPQNTFLDTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRP 66

Query: 114 -NCSFL--ELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATV 170
             C FL    T                                             +   
Sbjct: 67  CTCDFLHGPRT--------------------------------------------QRRAA 82

Query: 171 SKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSD 225
           ++I  A+    E  V++  Y K G  F  L  + P+++  G +  FI       +
Sbjct: 83  AQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVME 137

>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* Length = 109

 Score =  144 bits (365), Expect = 5e-42
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 46/146 (31%)

Query: 79  NFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFL--ELTEYTREEILGRNCSTY 136
            FV+ D  +PD P+++AS+ F  +T Y  +E+LG NC FL  E T               
Sbjct: 5   TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGT--------------- 49

Query: 137 TFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKK 196
                                        D   V KIRDA+++    +V+L+NY K G  
Sbjct: 50  -----------------------------DPKEVQKIRDAIKKGEACSVRLLNYRKDGTP 80

Query: 197 FWNLFHLQPMRDHKGELQYFIGVQLD 222
           FWNL  + P++   G +  F+GVQ+D
Sbjct: 81  FWNLLTVTPIKTPDGRVSKFVGVQVD 106

>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida} Length = 162

 Score =  145 bits (369), Expect = 6e-42
 Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 43/189 (22%)

Query: 55  DRAERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRN 114
               R   +     L + ++      V+ +    D  +I+ + +F  LT Y+R+EIL ++
Sbjct: 13  GLVPRGSHMINAQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQD 72

Query: 115 CSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIR 174
           C FL+                                              DQ   ++IR
Sbjct: 73  CRFLQ--------------GDDR----------------------------DQLGRARIR 90

Query: 175 DAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRL 234
            A+ E R     L NY K G  FWN   + P++    +  YFIG+Q D S  VE L   L
Sbjct: 91  KAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVE-LEREL 149

Query: 235 SEKTEQQSA 243
           +E   +   
Sbjct: 150 AELRARPKP 158

>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis} Length = 128

 Score =  143 bits (364), Expect = 1e-41
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 46/158 (29%)

Query: 73  LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFL--ELTEYTREEILG 130
            E      +IT+P +PDNPI+FA+ +FL+LT Y  +E++GRNC FL    T         
Sbjct: 3   SEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGT--------- 53

Query: 131 RNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINY 190
                                              D A V  I+ A+  ++ I + +INY
Sbjct: 54  -----------------------------------DPAHVRAIKSAIAAEKPIDIDIINY 78

Query: 191 TKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVE 228
            KSG+ FWN  H+ P+ +  G LQ+F+  QLD +  + 
Sbjct: 79  KKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELV 116

>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* Length = 132

 Score =  141 bits (357), Expect = 2e-40
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 47/167 (28%)

Query: 73  LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRN 132
           L+ +    VITDP + DNPI++ +  F+++T Y  EEILG+NC FL+             
Sbjct: 5   LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQ------------- 51

Query: 133 CSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTK 192
              +T                            D A V  IR A++ +  +TVQ+ NY K
Sbjct: 52  -GKHT----------------------------DPAEVDNIRTALQNKEPVTVQIQNYKK 82

Query: 193 SGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV---EPLRNRLSE 236
            G  FWN  ++ PM     +  YF+G+Q D +      + L + L+E
Sbjct: 83  DGTMFWNELNIDPMEI--EDKTYFVGIQNDITKQKEYEKLLEDSLTE 127

>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6 Length = 110

 Score =  138 bits (350), Expect = 1e-39
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 48/151 (31%)

Query: 79  NFVITDPRIPDNPIIFASDSFLELTEYTREEILGR--NCSFL--ELTEYTREEILGRNCS 134
            F+I + R+ +  +I+ +D F EL  Y+R E++ R   C FL    T             
Sbjct: 3   KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCT------------- 49

Query: 135 TYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSG 194
                                           +   ++I  A+    E  V++  Y K G
Sbjct: 50  -------------------------------QRRAAAQIAQALLGAEERKVEIAFYRKDG 78

Query: 195 KKFWNLFHLQPMRDHKGELQYFIGVQLDGSD 225
             F  L  + P+++  G +  FI       +
Sbjct: 79  SCFLCLVDVVPVKNEDGAVIMFILNFEVVME 109

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score =  144 bits (366), Expect = 1e-39
 Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 4/197 (2%)

Query: 259 ELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGD 318
           +L   NL  + +  +  + V  R    +              E      F+ +  LG G 
Sbjct: 12  DLGTENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPS--RPESFFQQSFQRLSRLGHGS 69

Query: 319 TGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS 378
            G V  V  +  G LYA+K         +++  +         +  HP    L  +++  
Sbjct: 70  YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG 129

Query: 379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPEN 438
             + L T+ C G  L     +       E     Y  + ++ L +LH  G+++ D+KP N
Sbjct: 130 GILYLQTELC-GPSLQQHC-EAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPAN 187

Query: 439 ILLQKDGHVVLTDFDLS 455
           I L   G   L DF L 
Sbjct: 188 IFLGPRGRCKLGDFGLL 204

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  140 bits (355), Expect = 2e-38
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 16/175 (9%)

Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T  GEKI    FK    LG G    V+  E    G   A+K ++K  M     V R  ++
Sbjct: 4   TCIGEKIE--DFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQR--VQ 59

Query: 357 REI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
            E+     L HP +  LY  F+ S ++ L+ + C  GE+   L  +  K F E+ AR + 
Sbjct: 60  NEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRV-KPFSENEARHFM 118

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS---------FMTSC 460
            +++ G+ YLH  GI++RDL   N+LL ++ ++ + DF L+           T C
Sbjct: 119 HQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLC 173

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  138 bits (349), Expect = 2e-37
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
              F+ I  LG G  G V           YA+K +  +      K+     E  +++ L+
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT----EEKLSTILSEVMLLASLN 60

Query: 365 HPFLPTLYASFQ-------------TSTHICLITDFCPGGELFALLDKQPMKIFREDSAR 411
           H ++   YA++                + + +  ++C  G L+ L+  + +   + D   
Sbjct: 61  HQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLN-QQRDEYW 119

Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               +++  L Y+H  GII+RDLKP NI + +  +V + DF L+
Sbjct: 120 RLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLA 163

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score =  133 bits (338), Expect = 8e-36
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSL 362
              +   + LG G       +      E++A K + KS++L  ++  +  +  EI     
Sbjct: 14  RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREK--MSMEISIHRS 71

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           L H  +   +  F+ +  + ++ + C    L  L  ++  K   E  AR+Y  ++V+G +
Sbjct: 72  LAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQ 129

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YLH   +I+RDLK  N+ L +D  V + DF L+
Sbjct: 130 YLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 162

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score =  134 bits (340), Expect = 8e-36
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%)

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI- 359
           +      +   + LG G       +      E++A K + KS++L  ++  +  +  EI 
Sbjct: 36  DPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREK--MSMEIS 93

Query: 360 -MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
               L H  +   +  F+ +  + ++ + C    L  L  ++  K   E  AR+Y  ++V
Sbjct: 94  IHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIV 151

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +G +YLH   +I+RDLK  N+ L +D  V + DF L+
Sbjct: 152 LGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 188

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score =  134 bits (339), Expect = 1e-35
 Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 1/159 (0%)

Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           T +     +  +  ++ +G G  G   LV+    G  Y +K +  S M ++ +   +  E
Sbjct: 15  TENLYFQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKER-EESRRE 73

Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             +++ + HP +     SF+ +  + ++ D+C GG+LF  ++ Q   +F+ED    +  +
Sbjct: 74  VAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQ 133

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + + L+++H   I++RD+K +NI L KDG V L DF ++
Sbjct: 134 ICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIA 172

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score =  130 bits (328), Expect = 2e-34
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 37/199 (18%)

Query: 296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRAC- 354
              SG+ + L+ +     +G G  G V L   +     YAMK + K  ++ +    R   
Sbjct: 3   SGSSGDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPP 62

Query: 355 --------------------IEREI--MSLLDHPFLPTLY--ASFQTSTHICLITDFCPG 390
                               + +EI  +  LDHP +  L          H+ ++ +    
Sbjct: 63  PRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQ 122

Query: 391 GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLT 450
           G +  +   +P+    ED ARFY  +++ G+EYLH   II+RD+KP N+L+ +DGH+ + 
Sbjct: 123 GPVMEVPTLKPLS---EDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIA 179

Query: 451 DFDLSFM---------TSC 460
           DF +S            + 
Sbjct: 180 DFGVSNEFKGSDALLSNTV 198

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  129 bits (327), Expect = 3e-34
 Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 9/157 (5%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
            I   H+  I+ LG G    V LVE    G  YA+K +      +R +  R   E ++  
Sbjct: 25  IIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQR---EADMHR 81

Query: 362 LLDHPFLPTLYASFQTST----HICLITDFCPGGELFALLD--KQPMKIFREDSARFYAA 415
           L +HP +  L A             L+  F   G L+  ++  K       ED   +   
Sbjct: 82  LFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLL 141

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
            +  GLE +H  G  +RDLKP NILL  +G  VL D 
Sbjct: 142 GICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDL 178

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score =  128 bits (323), Expect = 1e-33
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM 360
           +    H +     LG G T +V     +  G+L+A+K       L    V     E E++
Sbjct: 4   QSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR--PVDVQMREFEVL 61

Query: 361 SLLDHPFLPTLYASFQTST--HICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEV 417
             L+H  +  L+A  + +T  H  LI +FCP G L+  L +        E        +V
Sbjct: 62  KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDV 121

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQ----KDGHVVLTDFDLS--------FMTSC 460
           V G+ +L   GI++R++KP NI+            LTDF  +        F++  
Sbjct: 122 VGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY 176

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score =  129 bits (326), Expect = 2e-33
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 17/177 (9%)

Query: 299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE 358
             +    H +     LG G T +V     +  G+L+A+K       L    V     E E
Sbjct: 2   GSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR--PVDVQMREFE 59

Query: 359 IMSLLDHPFLPTLYASFQTST--HICLITDFCPGGELFALL-DKQPMKIFREDSARFYAA 415
           ++  L+H  +  L+A  + +T  H  LI +FCP G L+ +L +        E        
Sbjct: 60  VLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLR 119

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQ----KDGHVVLTDFDLS--------FMTSC 460
           +VV G+ +L   GI++R++KP NI+            LTDF  +        F++  
Sbjct: 120 DVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY 176

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score =  124 bits (314), Expect = 1e-32
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 298 GSGEKIGLH--HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI 355
           GS     +   H+     LG G  G V + E Q  G   A+K + +  + + + V +  I
Sbjct: 1   GSKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGK--I 58

Query: 356 EREI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARF 412
           +REI  + L  HP +  LY    T T   ++ ++  GGELF  +     ++   E  AR 
Sbjct: 59  KREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVE---EMEARR 115

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM--------TSC 460
              +++  ++Y H   +++RDLKPEN+LL    +  + DF LS M        TSC
Sbjct: 116 LFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSC 171

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  123 bits (310), Expect = 5e-32
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 23/164 (14%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           FK I+ +G G  G V   + +  G+ Y +K ++     N  K  R   E + ++ LDH  
Sbjct: 13  FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY----NNEKAER---EVKALAKLDHVN 65

Query: 368 LPTLYASFQ----------------TSTHICLITDFCPGGELFALLDKQPMKIFREDSAR 411
           +      +                  +  + +  +FC  G L   ++K+  +   +  A 
Sbjct: 66  IVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLAL 125

Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               ++  G++Y+H   +I RDLKP NI L     V + DF L 
Sbjct: 126 ELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLV 169

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score =  123 bits (311), Expect = 6e-32
 Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 2/153 (1%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L +F+  K +G G    V+       G   A+K ++   +++         E +++  L+
Sbjct: 31  LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN 90

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALL--DKQPMKIFREDSARFYAAEVVIGLE 422
           HP +   YASF     + ++ +    G+L  ++   K+  ++  E +   Y  ++   LE
Sbjct: 91  HPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALE 150

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++H   +++RD+KP N+ +   G V L D  L 
Sbjct: 151 HMHSRRVMHRDIKPANVFITATGVVKLGDLGLG 183

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score =  124 bits (313), Expect = 6e-32
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 22/181 (12%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIE 356
           ++G         LG G    V+             + + +K  + +   N  + +     
Sbjct: 61  QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQL 117

Query: 357 REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDK---QPMKIFREDSARFY 413
            E +           Y++        L+ +    G L   ++     P K+  +     +
Sbjct: 118 MERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISF 177

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQ-----------KDGHVVLTDFDLSFMTSCKP 462
           A  ++  +E +H   II+ D+KP+N +L                + L D   S      P
Sbjct: 178 AMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFP 237

Query: 463 Q 463
           +
Sbjct: 238 K 238

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score =  122 bits (308), Expect = 7e-32
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 10/160 (6%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
              ++ +  +G G  G    +  +  G++   K ++   M    K      E  ++  L 
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEK-QMLVSEVNLLRELK 63

Query: 365 HPFLPTLYASFQ--TSTHICLITDFCPGGELFALLD--KQPMKIFREDSARFYAAEVVIG 420
           HP +   Y      T+T + ++ ++C GG+L +++    +  +   E+       ++ + 
Sbjct: 64  HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA 123

Query: 421 LEYLH-----CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L+  H        +++RDLKP N+ L    +V L DF L+
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 163

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score =  122 bits (309), Expect = 2e-31
 Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLL 363
             ++  + +G G    V     +  G+ +A+K ++ +   +   +    ++RE  I  +L
Sbjct: 24  DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML 83

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDK-QPMKIFREDSARFYAAEVVIGL 421
            HP +  L  ++ +   + ++ +F  G +L   ++ +     ++ E  A  Y  +++  L
Sbjct: 84  KHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEAL 143

Query: 422 EYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLSFMTSCKPQVFY 466
            Y H   II+RD+KP  +LL        V L  F ++        V  
Sbjct: 144 RYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAG 191

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score =  120 bits (303), Expect = 5e-31
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH----RACIEREI--- 359
           +++P + LG G +  V     +   + YA+K ++ +   + +       R    +E+   
Sbjct: 18  NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 77

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVV 418
             +  HP +  L  +++T+T   L+ D    GELF  L +K       E   R     ++
Sbjct: 78  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALL 134

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS--------FMTSC 460
             +  LH L I++RDLKPENILL  D ++ LTDF  S            C
Sbjct: 135 EVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVC 184

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score =  122 bits (307), Expect = 6e-31
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 19/237 (8%)

Query: 223 GSDHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRP 282
           G++++     + S   + +S         +  +    +P  + R   L      P  P  
Sbjct: 15  GTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPAPPAPFD 74

Query: 283 HKRDNSSWIAIQKITGSGEKIGLH-HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEK 341
           H+           +T     +         + LG G  G VH  E    G   A K ++ 
Sbjct: 75  HR----------IVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKT 124

Query: 342 SVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQ 400
             M ++ +V     E  +M+ LDH  L  LY +F++   I L+ ++  GGELF  ++D+ 
Sbjct: 125 RGMKDKEEVKN---EISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDE- 180

Query: 401 PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL--QKDGHVVLTDFDLS 455
                 E     +  ++  G+ ++H + I++ DLKPENIL   +    + + DF L+
Sbjct: 181 -SYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLA 236

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score =  122 bits (308), Expect = 6e-31
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 8/147 (5%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           + LG G  G VH    +  G ++  K +     L++  V     E  IM+ L HP L  L
Sbjct: 57  EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKN---EISIMNQLHHPKLINL 113

Query: 372 YASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           + +F+    + LI +F  GGELF  +  +       E     Y  +   GL+++H   I+
Sbjct: 114 HDAFEDKYEMVLILEFLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHEHSIV 171

Query: 431 YRDLKPENILLQ--KDGHVVLTDFDLS 455
           + D+KPENI+ +  K   V + DF L+
Sbjct: 172 HLDIKPENIMCETKKASSVKIIDFGLA 198

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score =  120 bits (304), Expect = 8e-31
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 16/181 (8%)

Query: 294 QKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRA 353
            +   + E      +  + PLG G  G V     +   +   +K ++K  +L    +   
Sbjct: 12  LEGLAACEGEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDP 71

Query: 354 C---IEREI--MSLLDHPFLPTLYASFQTSTHICLITDF-CPGGELFALLDKQPMKIFRE 407
               +  EI  +S ++H  +  +   F+      L+ +    G +LFA +D+ P     E
Sbjct: 72  KLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPR--LDE 129

Query: 408 DSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS--------FMTS 459
             A +   ++V  + YL    II+RD+K ENI++ +D  + L DF  +        F T 
Sbjct: 130 PLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTF 189

Query: 460 C 460
           C
Sbjct: 190 C 190

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score =  119 bits (300), Expect = 1e-30
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 10/154 (6%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
            ++     +G G  G V +   +G     A K + K  + + ++  +   E EIM  LDH
Sbjct: 9   QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQ---EIEIMKSLDH 65

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDK-QPMKIFREDSARFYAAEVVIGLEYL 424
           P +  LY +F+ +T I L+ + C GGELF   ++    ++FRE  A     +V+  + Y 
Sbjct: 66  PNIIRLYETFEDNTDIYLVMELCTGGELF---ERVVHKRVFRESDAARIMKDVLSAVAYC 122

Query: 425 HCLGIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
           H L + +RDLKPEN L      D  + L DF L+
Sbjct: 123 HKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLA 156

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  123 bits (310), Expect = 1e-30
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 7/173 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            +K  + LG G  G V L + +  G+  A+K + K  +  +        E +++  LDHP
Sbjct: 27  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHP 86

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  LY  F+   +  L+ +   GGELF  +  +  K F E  A     +V+ G+ Y+H 
Sbjct: 87  NIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHK 144

Query: 427 LGIIYRDLKPENILLQ---KDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFI 476
             I++RDLKPEN+LL+   KD ++ + DF LS  T  +        +   Y+I
Sbjct: 145 NKIVHRDLKPENLLLESKSKDANIRIIDFGLS--THFEASKKMKDKIGTAYYI 195

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score =  121 bits (305), Expect = 1e-30
 Identities = 52/260 (20%), Positives = 92/260 (35%), Gaps = 26/260 (10%)

Query: 224 SDHVEPLRNRLSEKTEQQSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPH 283
             H     +    K  +++ + ++       E  R    +        A           
Sbjct: 4   HHHHSSGVDNKFNKERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKLND 63

Query: 284 KRDNSSWIAIQKITGSGEKIGLH--------HFKPIKPLGCGDTGSVHLVELQGAGELYA 335
            +   +     +  G  +++            + P   +G G +  V     +  G  +A
Sbjct: 64  AQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFA 123

Query: 336 MKAMEKSVMLNRNKVH---RACIEREI---MSLLDHPFLPTLYASFQTSTHICLITDFCP 389
           +K ME +      +     R    RE      +  HP + TL  S+++S+ + L+ D   
Sbjct: 124 VKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMR 183

Query: 390 GGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV 448
            GELF  L +K       E   R     ++  + +LH   I++RDLKPENILL  +  + 
Sbjct: 184 KGELFDYLTEK---VALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIR 240

Query: 449 LTDFDLS--------FMTSC 460
           L+DF  S            C
Sbjct: 241 LSDFGFSCHLEPGEKLRELC 260

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score =  119 bits (301), Expect = 1e-30
 Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 17/160 (10%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           + LG G    V LV+ +  G+L+A+K ++KS     + +     E  ++  + H  + TL
Sbjct: 15  EVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLEN---EIAVLKKIKHENIVTL 71

Query: 372 YASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
              ++++TH  L+     GGELF  +L++    ++ E  A     +V+  ++YLH  GI+
Sbjct: 72  EDIYESTTHYYLVMQLVSGGELFDRILERG---VYTEKDASLVIQQVLSAVKYLHENGIV 128

Query: 431 YRDLKPENILL---QKDGHVVLTDFDLS-------FMTSC 460
           +RDLKPEN+L    +++  +++TDF LS         T+C
Sbjct: 129 HRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTAC 168

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score =  119 bits (300), Expect = 1e-30
 Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 11/152 (7%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIERE--IMSLLDHPFL 368
           + LG G    V     +G G+ YA K ++K  + + R  V R  IERE  I+  + HP +
Sbjct: 11  EELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNI 70

Query: 369 PTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
            TL+  F+  T + LI +   GGELF  L +K   +   ED A  +  +++ G+ YLH  
Sbjct: 71  ITLHDIFENKTDVVLILELVSGGELFDFLAEK---ESLTEDEATQFLKQILDGVHYLHSK 127

Query: 428 GIIYRDLKPENILLQ----KDGHVVLTDFDLS 455
            I + DLKPENI+L      +  + L DF ++
Sbjct: 128 RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIA 159

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score =  118 bits (299), Expect = 1e-30
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI- 359
             +    +  ++ LG G  G V L   +   E  A+K ++    ++        I++EI 
Sbjct: 4   PFVE--DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD----CPENIKKEIC 57

Query: 360 -MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARFYAAEV 417
              +L+H  +   Y   +      L  ++C GGELF  +     M    E  A+ +  ++
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMP---EPDAQRFFHQL 114

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQ 463
           + G+ YLH +GI +RD+KPEN+LL +  ++ ++DF L+ +     +
Sbjct: 115 MAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score =  122 bits (309), Expect = 1e-30
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-- 359
           KIG  H+     LG G  G V + + +  G   A+K + +  + + + V +  I REI  
Sbjct: 14  KIG--HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGK--IRREIQN 69

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARFYAAEVV 418
           + L  HP +  LY    T + I ++ ++  GGELF  +     +    E  +R    +++
Sbjct: 70  LKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLD---EKESRRLFQQIL 126

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM--------TSC 460
            G++Y H   +++RDLKPEN+LL    +  + DF LS M        TSC
Sbjct: 127 SGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSC 176

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score =  120 bits (304), Expect = 2e-30
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIERE--IMSLL 363
            +   + LG G    V     +  G  YA K ++K      R  V R  IERE  I+  +
Sbjct: 13  FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQV 72

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLE 422
            HP + TL+  ++  T + LI +   GGELF  L  K+      E+ A  +  +++ G+ 
Sbjct: 73  LHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGVN 129

Query: 423 YLHCLGIIYRDLKPENILLQ----KDGHVVLTDFDLS 455
           YLH   I + DLKPENI+L        H+ L DF L+
Sbjct: 130 YLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score =  120 bits (302), Expect = 2e-30
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 10/182 (5%)

Query: 281 RPHKRDNSSWIAIQKITG-SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAM 339
             H   +   +  + +   S E     +    K LG G    V     +  G+ YA K +
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFL 62

Query: 340 EKSVMLNRNKVHRACIERE--IMSLLDH-PFLPTLYASFQTSTHICLITDFCPGGELFAL 396
           +K     R +  RA I  E  ++ L    P +  L+  ++ ++ I LI ++  GGE+F+L
Sbjct: 63  KKR---RRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSL 119

Query: 397 LDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFD 453
              +  ++  E+       +++ G+ YLH   I++ DLKP+NILL      G + + DF 
Sbjct: 120 CLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFG 179

Query: 454 LS 455
           +S
Sbjct: 180 MS 181

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  119 bits (301), Expect = 2e-30
 Identities = 48/217 (22%), Positives = 75/217 (34%), Gaps = 43/217 (19%)

Query: 283 HKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKS 342
           H   +S    +    GS  ++    +     +G G  G V +        + A+K M K+
Sbjct: 4   HHHHSSGRENLYFQGGSLLELQ-KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKN 62

Query: 343 VMLNRNKVHRACIERE--IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELF------ 394
            +   N      I+ E  +M  L HP +  LY  ++   +ICL+ + C GG L       
Sbjct: 63  KIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVF 122

Query: 395 --------------------------------ALLDKQPMKIFREDSARFYAAEVVIGLE 422
                                               +    + RE        ++   L 
Sbjct: 123 IDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALH 182

Query: 423 YLHCLGIIYRDLKPENILLQKDG--HVVLTDFDLSFM 457
           YLH  GI +RD+KPEN L   +    + L DF LS  
Sbjct: 183 YLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKE 219

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score =  119 bits (300), Expect = 3e-30
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
           + + E+  + +++ +K +G G+   V L      G   A+K ++K+ +   +      + 
Sbjct: 6   SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQK---LF 62

Query: 357 REI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARFY 413
           RE+  M +L+HP +  L+   +T   + LI ++  GGE+F  L+    MK   E  AR  
Sbjct: 63  REVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMK---EKEARSK 119

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             ++V  ++Y H   I++RDLK EN+LL  D ++ + DF  S
Sbjct: 120 FRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS 161

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  118 bits (297), Expect = 3e-30
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 294 QKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKS-VMLNRNKVHR 352
           ++       I    F   + LG G  G VHLVE + +G    +K + K    +   ++  
Sbjct: 11  RENLYFQGTID-DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEA 69

Query: 353 ACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQP-MKIFREDSA 410
              E E++  LDHP +  ++  F+   ++ ++ + C GGEL   ++  Q   K   E   
Sbjct: 70  ---EIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYV 126

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
                +++  L Y H   ++++DLKPENIL Q       + + DF L+
Sbjct: 127 AELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLA 174

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score =  119 bits (300), Expect = 4e-30
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI- 359
                  +  +K +G G+ G   L+  +   EL A+K +E+   ++ N      ++REI 
Sbjct: 17  HDSD--RYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDEN------VQREII 68

Query: 360 -MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
               L HP +        T TH+ +I ++  GGEL+  +       F ED ARF+  +++
Sbjct: 69  NHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNA--GRFSEDEARFFFQQLL 126

Query: 419 IGLEYLHCLGIIYRDLKPENILL--QKDGHVVLTDFDLS 455
            G+ Y H + I +RDLK EN LL       + + DF  S
Sbjct: 127 SGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYS 165

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score =  118 bits (297), Expect = 6e-30
 Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 13/149 (8%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFLP 369
           + LG G+ G VH      + + Y  K ++           +  +++E  I+++  H  + 
Sbjct: 11  EDLGRGEFGIVHRCVETSSKKTYMAKFVKVK------GTDQVLVKKEISILNIARHRNIL 64

Query: 370 TLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
            L+ SF++   + +I +F  G ++F  +          E     Y  +V   L++LH   
Sbjct: 65  HLHESFESMEELVMIFEFISGLDIFERINTSAF--ELNEREIVSYVHQVCEALQFLHSHN 122

Query: 429 IIYRDLKPENILLQ--KDGHVVLTDFDLS 455
           I + D++PENI+ Q  +   + + +F  +
Sbjct: 123 IGHFDIRPENIIYQTRRSSTIKIIEFGQA 151

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  121 bits (305), Expect = 6e-30
 Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 13/208 (6%)

Query: 274 HSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGEL 333
           H        + + +        IT     +    ++ +K LG G  G V L   +     
Sbjct: 6   HHSSGRENLYFQGDLQATPGMFITSKKGHLS-EMYQRVKKLGSGAYGEVLLCRDKVTHVE 64

Query: 334 YAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFLPTLYASFQTSTHICLITDFCPGG 391
            A+K + K+ +   +    + +  E  ++ LLDHP +  LY  F+   +  L+ +   GG
Sbjct: 65  RAIKIIRKTSVSTSSN---SKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGG 121

Query: 392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDGHVV 448
           ELF  +  +    F E  A     +V+ G+ YLH   I++RDLKPEN+LL+   KD  + 
Sbjct: 122 ELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIK 179

Query: 449 LTDFDLSFMTSCKPQVFYHAHVNGFYFI 476
           + DF LS     + Q      +   Y+I
Sbjct: 180 IVDFGLS--AVFENQKKMKERLGTAYYI 205

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score =  118 bits (297), Expect = 7e-30
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI- 359
             +    +  ++ LG G  G V L   +   E  A+K ++    ++        I++EI 
Sbjct: 4   PFVE--DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD----CPENIKKEIC 57

Query: 360 -MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARFYAAEV 417
              +L+H  +   Y   +      L  ++C GGELF  +     M    E  A+ +  ++
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMP---EPDAQRFFHQL 114

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQ 463
           + G+ YLH +GI +RD+KPEN+LL +  ++ ++DF L+ +     +
Sbjct: 115 MAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score =  118 bits (297), Expect = 7e-30
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 9/156 (5%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH-RACIERE--IMSLL 363
            +   + LG G    V     +  G  YA K ++K       +   R  IERE  I+  +
Sbjct: 13  FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQV 72

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            H  + TL+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ Y
Sbjct: 73  LHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNY 130

Query: 424 LHCLGIIYRDLKPENILLQ----KDGHVVLTDFDLS 455
           LH   I + DLKPENI+L        H+ L DF L+
Sbjct: 131 LHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score =  116 bits (294), Expect = 9e-30
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLD 364
           ++   + LG G    V     +  G  +A K +    +  R+      +ERE  I   L 
Sbjct: 7   NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARD---FQKLEREARICRKLQ 63

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           HP +  L+ S Q  +   L+ D   GGELF  ++ +   + + E  A     +++  + Y
Sbjct: 64  HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAY 120

Query: 424 LHCLGIIYRDLKPENILL---QKDGHVVLTDFDLS 455
            H  GI++R+LKPEN+LL    K   V L DF L+
Sbjct: 121 CHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA 155

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score =  118 bits (297), Expect = 9e-30
 Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 19/176 (10%)

Query: 296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI 355
           +  S   IG   +   + LG G  G V L       +  A+K + + ++   +   R  +
Sbjct: 1   MAISKRHIG--PYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMR--V 56

Query: 356 EREI--MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARF 412
           EREI  + LL HP +  LY    T T I ++ ++  GGELF  +++K+ M    ED  R 
Sbjct: 57  EREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEKKRMT---EDEGRR 112

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM--------TSC 460
           +  +++  +EY H   I++RDLKPEN+LL  + +V + DF LS +        TSC
Sbjct: 113 FFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSC 168

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score =  117 bits (296), Expect = 1e-29
 Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIERE--IMSLLDHPFL 368
           + LG G    V     +  G  YA K ++K    + R  V R  IERE  I+  + HP +
Sbjct: 17  EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNV 76

Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
            TL+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ YLH L 
Sbjct: 77  ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQ 134

Query: 429 IIYRDLKPENILLQ----KDGHVVLTDFDLS 455
           I + DLKPENI+L         + + DF L+
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA 165

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score =  120 bits (303), Expect = 1e-29
 Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 24/215 (11%)

Query: 282 PHKRDNSSWIAIQKITGSGEKIGLHHFKPI-------KPLGCGDTGSVHLVELQGAGELY 334
            H       +  Q I  +           I       + LG G  G V L + +      
Sbjct: 5   HHHSSGRENLYFQGIAINPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEK 64

Query: 335 AMKAMEKSVMLNR--------NKVHRACIERE--IMSLLDHPFLPTLYASFQTSTHICLI 384
           A+K ++KS              +     I  E  ++  LDHP +  L+  F+   +  L+
Sbjct: 65  AIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLV 124

Query: 385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-- 442
           T+F  GGELF  +  +    F E  A     +++ G+ YLH   I++RD+KPENILL+  
Sbjct: 125 TEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENK 182

Query: 443 -KDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFI 476
               ++ + DF LS  +           +   Y+I
Sbjct: 183 NSLLNIKIVDFGLS--SFFSKDYKLRDRLGTAYYI 215

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score =  116 bits (292), Expect = 1e-29
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 12/155 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLD 364
            +  +  LG G  G V   + +   + YA+K + K+   N++    + I RE  ++  LD
Sbjct: 23  RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDT---STILREVELLKKLD 79

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDK-QPMKIFREDSARFYAAEVVIGLEY 423
           HP +  L+   + S+   ++ +   GGELF   D+    K F E  A     +V  G+ Y
Sbjct: 80  HPNIMKLFEILEDSSSFYIVGELYTGGELF---DEIIKRKRFSEHDAARIIKQVFSGITY 136

Query: 424 LHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
           +H   I++RDLKPENILL+   KD  + + DF LS
Sbjct: 137 MHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLS 171

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  120 bits (303), Expect = 2e-29
 Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 11/218 (5%)

Query: 241 QSAKIVKATAENVNEAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSG 300
           +    V    +          D   +        +       +  D       Q +    
Sbjct: 95  EPTAPVLIPGDERKRRRGYDVDEQGKIVR--GKGTVSSNYDNYVFDIWKQYYPQPVEIKH 152

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM 360
           + +   H+   + LG G  G VH V  +  G  +A K +      ++  V +   E + M
Sbjct: 153 DHVL-DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRK---EIQTM 208

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVI 419
           S+L HP L  L+ +F+    + +I +F  GGELF  + D+       ED A  Y  +V  
Sbjct: 209 SVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEH--NKMSEDEAVEYMRQVCK 266

Query: 420 GLEYLHCLGIIYRDLKPENILLQ--KDGHVVLTDFDLS 455
           GL ++H    ++ DLKPENI+    +   + L DF L+
Sbjct: 267 GLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLT 304

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  119 bits (299), Expect = 3e-29
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 283 HKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKS 342
           H   +S     ++            +  +  LG G  G V   + +   + YA+K + K+
Sbjct: 4   HHHHSSG----RENLYFQGTFA-ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKA 58

Query: 343 VMLNRN--KVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ 400
              N++   + R   E E++  LDHP +  L+   + S+   ++ +   GGELF  + K+
Sbjct: 59  SAKNKDTSTILR---EVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR 115

Query: 401 PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLS 455
             K F E  A     +V  G+ Y+H   I++RDLKPENILL+   KD  + + DF LS
Sbjct: 116 --KRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLS 171

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score =  115 bits (291), Expect = 3e-29
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDHPFLP 369
             LG G  G V  V         A+K ++K  +          +++EI  +  L H  + 
Sbjct: 11  DLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEAN-VKKEIQLLRRLRHKNVI 69

Query: 370 TLY--ASFQTSTHICLITDFCPGG--ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
            L      +    + ++ ++C  G  E+    D  P K F    A  Y  +++ GLEYLH
Sbjct: 70  QLVDVLYNEEKQKMYMVMEYCVCGMQEML---DSVPEKRFPVCQAHGYFCQLIDGLEYLH 126

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             GI+++D+KP N+LL   G + ++   ++
Sbjct: 127 SQGIVHKDIKPGNLLLTTGGTLKISALGVA 156

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  115 bits (290), Expect = 4e-29
 Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 14/179 (7%)

Query: 283 HKRDNSSWIAI--QKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAME 340
           H   +SS + +  + +      +    +  +K +G G +  V  V L    ++YA+K + 
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMSVKGRIYSILKQIGSGGSSKVFQV-LNEKKQIYAIKYVN 61

Query: 341 KSVMLNRNKVHRACIEREI--MSLLDHPFLP--TLYASFQTSTHICLITDFCPGGELFAL 396
                  +         EI  ++ L         LY    T  +I ++ + C   +L + 
Sbjct: 62  LE---EADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSW 117

Query: 397 LDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L K+  K       + Y   ++  +  +H  GI++ DLKP N L+  DG + L DF ++
Sbjct: 118 LKKK--KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA 173

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score =  115 bits (290), Expect = 5e-29
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 21/171 (12%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRAC---IERE--IMS 361
            +   K LG G  G V L   +   +  A+K + K      +         +E E  I+ 
Sbjct: 11  EYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILK 70

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIG 420
            L+HP +  +   F       ++ +   GGELF  ++  +     +E + + Y  ++++ 
Sbjct: 71  KLNHPCIIKIKNFFDA-EDYYIVLELMEGGELFDKVVGNKR---LKEATCKLYFYQMLLA 126

Query: 421 LEYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLS--------FMTSC 460
           ++YLH  GII+RDLKPEN+LL    +D  + +TDF  S          T C
Sbjct: 127 VQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLC 177

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score =  116 bits (292), Expect = 6e-29
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 12/155 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLD 364
           ++   + LG G    V     +  G  +A K +    +   +      +ERE  I   L 
Sbjct: 30  NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL---SARDFQKLEREARICRKLQ 86

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           HP +  L+ S Q  +   L+ D   GGELF  ++ +   + + E  A     +++  + Y
Sbjct: 87  HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAY 143

Query: 424 LHCLGIIYRDLKPENILL---QKDGHVVLTDFDLS 455
            H  GI++R+LKPEN+LL    K   V L DF L+
Sbjct: 144 CHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA 178

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  115 bits (289), Expect = 1e-28
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-- 359
            +    +  +K +G G +  V  V L    ++YA+K +        +         EI  
Sbjct: 5   SVKGRIYSILKQIGSGGSSKVFQV-LNEKKQIYAIKYVNLE---EADNQTLDSYRNEIAY 60

Query: 360 MSLLDHPFLP--TLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           ++ L         LY    T  +I ++ + C   +L + L K+  K       + Y   +
Sbjct: 61  LNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK--KSIDPWERKSYWKNM 117

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  +  +H  GI++ DLKP N L+  DG + L DF ++
Sbjct: 118 LEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA 154

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score =  113 bits (286), Expect = 4e-28
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 274 HSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGEL 333
            S            +S +    I GS        F+    LG G T  V+  + +G  + 
Sbjct: 21  QSMSSVTASAAPGTASLVPDYWIDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKP 80

Query: 334 YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL 393
           YA+K ++K+V  ++  V     E  ++  L HP +  L   F+T T I L+ +   GGEL
Sbjct: 81  YALKVLKKTV--DKKIVRT---EIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGEL 135

Query: 394 F-ALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDGHVVL 449
           F  +++K     + E  A     +++  + YLH  GI++RDLKPEN+L      D  + +
Sbjct: 136 FDRIVEK---GYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKI 192

Query: 450 TDFDLS 455
            DF LS
Sbjct: 193 ADFGLS 198

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score =  115 bits (290), Expect = 4e-28
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLD 364
            ++  + LG G    V       AG+ YA   +    +   +      +ERE  I  LL 
Sbjct: 12  EYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL---SARDHQKLEREARICRLLK 68

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           HP +  L+ S     H  LI D   GGELF  ++ ++    + E  A     +++  + +
Sbjct: 69  HPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREY---YSEADASHCIQQILEAVLH 125

Query: 424 LHCLGIIYRDLKPENILL---QKDGHVVLTDFDLSFMTSCKPQVFY 466
            H +G+++R+LKPEN+LL    K   V L DF L+     + Q ++
Sbjct: 126 CHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWF 171

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  114 bits (288), Expect = 5e-28
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 21/171 (12%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRAC---IERE--IMS 361
            +   K LG G  G V L   +   +  A++ + K      +         +E E  I+ 
Sbjct: 136 EYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILK 195

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIG 420
            L+HP +  +   F       ++ +   GGELF  ++  +     +E + + Y  ++++ 
Sbjct: 196 KLNHPCIIKIKNFFDAE-DYYIVLELMEGGELFDKVVGNKR---LKEATCKLYFYQMLLA 251

Query: 421 LEYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLS--------FMTSC 460
           ++YLH  GII+RDLKPEN+LL    +D  + +TDF  S          T C
Sbjct: 252 VQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLC 302

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  111 bits (280), Expect = 8e-28
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 17/165 (10%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM-LNRNKVHRACIEREIMSLL 363
           L  F+PI+ LG G  G V   + +     YA+K +      L R KV R   E + ++ L
Sbjct: 4   LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMR---EVKALAKL 60

Query: 364 DHPFLPTLYASF------------QTSTHICLITDFCPGGELFALLDKQPMKIFREDS-A 410
           +HP +   + ++                ++ +    C    L   ++ +     RE S  
Sbjct: 61  EHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVC 120

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                ++   +E+LH  G+++RDLKP NI    D  V + DF L 
Sbjct: 121 LHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLV 165

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  113 bits (284), Expect = 1e-27
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-- 359
            +    +  +K +G G +  V  V L    ++YA+K +        +         EI  
Sbjct: 52  SVKGRIYSILKQIGSGGSSKVFQV-LNEKKQIYAIKYVNLE---EADNQTLDSYRNEIAY 107

Query: 360 MSLLDHPFLP--TLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
           ++ L         LY    T  +I ++ + C   +L + L K+  K       + Y   +
Sbjct: 108 LNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK--KSIDPWERKSYWKNM 164

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  +  +H  GI++ DLKP N L+  DG + L DF ++
Sbjct: 165 LEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA 201

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score =  111 bits (280), Expect = 1e-27
 Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPT 370
             LG G    V         + YA+K +EK     R++V R   E E++     H  +  
Sbjct: 19  DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFR---EVEMLYQCQGHRNVLE 75

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDK-QPMKIFREDSARFYAAEVVIGLEYLHCLGI 429
           L   F+      L+ +   GG +          + F E  A     +V   L++LH  GI
Sbjct: 76  LIEFFEEEDRFYLVFEKMRGGSIL---SHIHKRRHFNELEASVVVQDVASALDFLHNKGI 132

Query: 430 IYRDLKPENILLQ---KDGHVVLTDFDLS 455
            +RDLKPENIL +   +   V + DFDL 
Sbjct: 133 AHRDLKPENILCEHPNQVSPVKICDFDLG 161

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score =  110 bits (277), Expect = 4e-27
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 23/163 (14%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPT 370
           KPLG G          + + + +A+K + K              E   + L + HP +  
Sbjct: 17  KPLGEGSFSICRKCVHKKSNQAFAVKIISKR------MEANTQKEITALKLCEGHPNIVK 70

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDK-QPMKIFREDSARFYAAEVVIGLEYLHCLGI 429
           L+  F    H  L+ +   GGELF   ++ +  K F E  A +   ++V  + ++H +G+
Sbjct: 71  LHEVFHDQLHTFLVMELLNGGELF---ERIKKKKHFSETEASYIMRKLVSAVSHMHDVGV 127

Query: 430 IYRDLKPENILL---QKDGHVVLTDFDLS---------FMTSC 460
           ++RDLKPEN+L      +  + + DF  +           T C
Sbjct: 128 VHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPC 170

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score =  113 bits (284), Expect = 7e-27
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 20/172 (11%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            ++  + LG G  G V     Q  GE  A+K   +   L+     R C+E +IM  L+HP
Sbjct: 15  PWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE--LSPKNRERWCLEIQIMKKLNHP 72

Query: 367 FLPTLYASFQTSTHI------CLITDFCPGGELFALLDK-QPMKIFREDSARFYAAEVVI 419
            + +          +       L  ++C GG+L   L++ +     +E   R   +++  
Sbjct: 73  NVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISS 132

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGH---VVLTDFDLS--------FMTSC 460
            L YLH   II+RDLKPENI+LQ         + D   +             
Sbjct: 133 ALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFV 184

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score =  108 bits (273), Expect = 7e-27
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI---MSLL 363
            F  ++ +G G+ GSV     +  G +YA+K   +S       V      RE+     L 
Sbjct: 12  EFHELEKIGSGEFGSVFKCVKRLDGCIYAIK---RSKKPLAGSVDEQNALREVYAHAVLG 68

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGL 421
            H  +   ++++    H+ +  ++C GG L   + +  + M  F+E   +    +V  GL
Sbjct: 69  QHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGL 128

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFY 466
            Y+H + +++ D+KP NI + +         +         +V +
Sbjct: 129 RYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMF 173

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score =  107 bits (269), Expect = 5e-26
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 14/167 (8%)

Query: 297 TGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE 356
            G   ++G    +  + L  G    V+  +  G+G  YA+K +  +       + +   E
Sbjct: 19  VGQTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQ---E 75

Query: 357 REIM-SLLDHPFLPTLYASFQTSTH--------ICLITDFCPGGELFALLDKQPMKIFRE 407
              M  L  HP +    ++                L+T+ C G  +  L   +       
Sbjct: 76  VCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSC 135

Query: 408 DSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQKDGHVVLTDF 452
           D+      +    ++++H     II+RDLK EN+LL   G + L DF
Sbjct: 136 DTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDF 182

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score =  107 bits (268), Expect = 6e-26
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 23/164 (14%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPT 370
           + LG G  G V     +  G+  A+K +  S    +        E +        P +  
Sbjct: 35  QVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQ--------EVDHHWQASGGPHIVC 86

Query: 371 LYASFQTSTH----ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +   ++   H    + +I +   GGELF+ + ++  + F E  A     ++   +++LH 
Sbjct: 87  ILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHS 146

Query: 427 LGIIYRDLKPENILLQ---KDGHVVLTDFDLS-------FMTSC 460
             I +RD+KPEN+L     KD  + LTDF  +         T C
Sbjct: 147 HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPC 190

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score =  106 bits (267), Expect = 8e-26
 Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 21/204 (10%)

Query: 274 HSQPVFPRPHKRDNSSWIAIQKIT-GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGE 332
           HS  + PR       + +   K+  G  ++     ++    LG G  GSV+         
Sbjct: 10  HSSGLVPRGSHMAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNL 69

Query: 333 LYAMKAMEKSVMLNRNKV-HRACIEREI--MSLLDHPFLP---TLYASFQTSTHICLITD 386
             A+K +EK  + +  ++ +   +  E+  +  +   F      L   F+      LI +
Sbjct: 70  PVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGF-SGVIRLLDWFERPDSFVLILE 128

Query: 387 FC-PGGELFA-LLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL-QK 443
              P  +LF  + ++  ++   E+ AR +  +V+  + + H  G+++RD+K ENIL+   
Sbjct: 129 RPEPVQDLFDFITERGALQ---EELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLN 185

Query: 444 DGHVVLTDFDLS-------FMTSC 460
            G + L DF          +    
Sbjct: 186 RGELKLIDFGSGALLKDTVYTDFD 209

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score =  106 bits (268), Expect = 9e-26
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDH 365
            ++  + +G G          +     +A+K ++KS             E EI+     H
Sbjct: 23  GYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTE-------EIEILLRYGQH 75

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELF-ALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           P + TL   +    ++ ++T+   GGEL   +L ++    F E  A      +   +EYL
Sbjct: 76  PNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKF---FSEREASAVLFTITKTVEYL 132

Query: 425 HCLGIIYRDLKPENILLQ-KDGH---VVLTDFDLS---------FMTSC 460
           H  G+++RDLKP NIL   + G+   + + DF  +          MT C
Sbjct: 133 HAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPC 181

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score =  105 bits (265), Expect = 2e-25
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 11/188 (5%)

Query: 266 RPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLV 325
           +     +   Q + P     +        K      +  +H       +G G  G VH +
Sbjct: 18  KTWSSGSAKLQRLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRM 77

Query: 326 ELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT 385
           + +  G   A+K +   V            E    + L  P +  LY + +    + +  
Sbjct: 78  KDKQTGFQCAVKKVRLEVFRVE--------ELVACAGLSSPRIVPLYGAVREGPWVNIFM 129

Query: 386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG 445
           +   GG L  L+  + M    ED A +Y  + + GLEYLH   I++ D+K +N+LL  DG
Sbjct: 130 ELLEGGSLGQLI--KQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDG 187

Query: 446 HVV-LTDF 452
               L DF
Sbjct: 188 SRAALCDF 195

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score =  104 bits (261), Expect = 3e-25
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 16/151 (10%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPT 370
           + LG G  G V  +  +   E +A+K ++      R        E E+       P +  
Sbjct: 24  QVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR--------EVELHWRASQCPHIVR 75

Query: 371 LYASFQTS----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +   ++        + ++ +   GGELF+ +  +  + F E  A      +   ++YLH 
Sbjct: 76  IVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS 135

Query: 427 LGIIYRDLKPENILLQ---KDGHVVLTDFDL 454
           + I +RD+KPEN+L      +  + LTDF  
Sbjct: 136 INIAHRDVKPENLLYTSKRPNAILKLTDFGF 166

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score =  103 bits (259), Expect = 9e-25
 Identities = 40/206 (19%), Positives = 82/206 (39%), Gaps = 24/206 (11%)

Query: 272 AIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAG 331
           ++ ++P+   P      +        G   +     ++    LG G  G+V         
Sbjct: 1   SMLTKPLQGPPAPPGTPT----PPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRLTDR 56

Query: 332 ELYAMKAMEKSVMLNRNKVHRAC-IEREI--MSLLD----HPFLPTLYASFQTSTHICLI 384
              A+K + ++ +L  + +  +     E+  +  +     HP +  L   F+T     L+
Sbjct: 57  LQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLV 116

Query: 385 TDF-CPGGELFALL-DKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL- 441
            +   P  +LF  + +K P+    E  +R +  +VV  +++ H  G+++RD+K ENIL+ 
Sbjct: 117 LERPLPAQDLFDYITEKGPLG---EGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILID 173

Query: 442 QKDGHVVLTDFDLS-------FMTSC 460
            + G   L DF          +    
Sbjct: 174 LRRGCAKLIDFGSGALLHDEPYTDFD 199

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score =  104 bits (260), Expect = 2e-24
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 24/165 (14%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPT 370
           + LG G  G V  +  +   E +A+K ++      R        E E+       P +  
Sbjct: 68  QVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR--------EVELHWRASQCPHIVR 119

Query: 371 LYASFQTS----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +   ++        + ++ +   GGELF+ +  +  + F E  A      +   ++YLH 
Sbjct: 120 IVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS 179

Query: 427 LGIIYRDLKPENILLQ---KDGHVVLTDFDLS--------FMTSC 460
           + I +RD+KPEN+L      +  + LTDF  +          T C
Sbjct: 180 INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPC 224

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score =  103 bits (258), Expect = 2e-24
 Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 40/231 (17%)

Query: 255 EAVRELPDANLRPEDLWAIHSQPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPL 314
                  +A   P  +    +  V+P+      ++   +  +   GE+      K ++PL
Sbjct: 21  LIGYCREEALKEPAAMVEAVTATVWPQ------NAETTVDSLLSQGER----KLKLVEPL 70

Query: 315 GCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYAS 374
             GD   V LV      E +A+K        +R+++ R        + L           
Sbjct: 71  RVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDR 130

Query: 375 FQ--------------------------TSTHICLITDFCPG--GELFALLDKQPMK--I 404
            +                             +  L+          LF+ LD   +    
Sbjct: 131 RRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGD 190

Query: 405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               +     A+++     L   G+++    P+N+ +  DG ++L D    
Sbjct: 191 EGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSAL 241

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  101 bits (252), Expect = 1e-23
 Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 35/177 (19%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH-------------------- 351
             LG  D  +      Q  GE + +     +     N +                     
Sbjct: 79  TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQ 138

Query: 352 -----RACIEREIMSLLDHPFLPTLYASFQT--STHICLITDFC------PGGELFALLD 398
                R     +++       +  +    +         +           G  L +   
Sbjct: 139 AKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSS 198

Query: 399 KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               K     +      +V+  L  LH  G+++  L+P +I+L + G V LT F+  
Sbjct: 199 TH--KSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL 253

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 99.0 bits (247), Expect = 3e-23
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 10/162 (6%)

Query: 295 KITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRAC 354
            I G   +  ++  + +  +G G  G V  +  +  G + A+K M      + NK     
Sbjct: 14  TIGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMR----RSGNKEENKR 69

Query: 355 IEREI---MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSAR 411
           I  ++   +   D P++   + +F T+T + +  +          L K+      E    
Sbjct: 70  ILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAE--KLKKRMQGPIPERILG 127

Query: 412 FYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDF 452
                +V  L YL    G+I+RD+KP NILL + G + L DF
Sbjct: 128 KMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDF 169

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 99.8 bits (249), Expect = 7e-23
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 19/179 (10%)

Query: 299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE 358
           S   +G   F P   LG G  G++    +       A+K +             +  +RE
Sbjct: 17  SVVIVGKISFCPKDVLGHGAEGTIVYRGMFD-NRDVAVKRILPECF--------SFADRE 67

Query: 359 I---MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           +       +HP +   + + +      +  + C    L   + +Q               
Sbjct: 68  VQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC-AATLQEYV-EQKDFAHLGLEPITLLQ 125

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGH-----VVLTDFDLSFMTSCKPQVFYHAH 469
           +   GL +LH L I++RDLKP NIL+           +++DF L    +     F    
Sbjct: 126 QTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRS 184

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 98.8 bits (246), Expect = 1e-22
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 315 GCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDHPFLPTLY 372
           G  D  +V+L   +  GE   ++ +    +   +      ++ E+    L +HP +    
Sbjct: 36  GFEDLMTVNLARYKPTGEYVTVRRIN---LEACSNEMVTFLQGELHVSKLFNHPNIVPYR 92

Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYR 432
           A+F     + ++T F   G    L+    M    E +  +    V+  L+Y+H +G ++R
Sbjct: 93  ATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHR 152

Query: 433 DLKPENILLQKDGHVVLTDF 452
            +K  +IL+  DG V L+  
Sbjct: 153 SVKASHILISVDGKVYLSGL 172

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 99.0 bits (246), Expect = 1e-22
 Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 31/175 (17%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-------- 363
             LG  D  +      Q  GE + +     +     N + +   E   + LL        
Sbjct: 84  TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQ 143

Query: 364 --------------DHPFLPTLYASFQTSTHICLITDF-------CPGGELFALLDKQPM 402
                           P    +         + +++ F               +L     
Sbjct: 144 AKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSS 203

Query: 403 --KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             K     +      +V+  L  LH  G+++  L+P +I+L + G V LT F+  
Sbjct: 204 THKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL 258

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLD 364
            F  ++ +G G  G V         ++ A+K ++    L   +     I++EI  +S  D
Sbjct: 23  LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIID----LEEAEDEIEDIQQEITVLSQCD 78

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
            P++   Y S+   T + +I ++  GG    LL+  P     E        E++ GL+YL
Sbjct: 79  SPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYL 135

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDF 452
           H    I+RD+K  N+LL + G V L DF
Sbjct: 136 HSEKKIHRDIKAANVLLSEHGEVKLADF 163

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 95.9 bits (239), Expect = 3e-22
 Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLD 364
            ++  + +G G T  V         E  A+K +     L + +     + +EI  MS   
Sbjct: 16  DYELQEVIGSGATAVVQAAYCAPKKEKVAIKRIN----LEKCQTSMDELLKEIQAMSQCH 71

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALL------DKQPMKIFREDSARFYAAEVV 418
           HP + + Y SF     + L+     GG +  ++       +    +  E +      EV+
Sbjct: 72  HPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVL 131

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
            GLEYLH  G I+RD+K  NILL +DG V + DF
Sbjct: 132 EGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADF 165

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 95.1 bits (237), Expect = 9e-22
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 10/157 (6%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-- 359
                  K +  +G G  GSV+ +  + +G++ A+K +        ++  +  +  ++  
Sbjct: 18  DFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIR----STVDEKEQKQLLMDLDV 73

Query: 360 -MSLLDHPFLPTLYASFQTSTHICLITDFCPGG--ELFALLDKQPMKIFREDSARFYAAE 416
            M   D P++   Y +        +  +       + +  +      +  E+        
Sbjct: 74  VMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLA 133

Query: 417 VVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDF 452
            V  L +L   L II+RD+KP NILL + G++ L DF
Sbjct: 134 TVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDF 170

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 95.3 bits (237), Expect = 1e-21
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 292 AIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH 351
           A         ++    F+ I  LG G+ G V  V  + +G + A K +     L      
Sbjct: 19  AFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH----LEIKPAI 74

Query: 352 RACIERE--IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
           R  I RE  ++   + P++   Y +F +   I +  +   GG L  +L K       E  
Sbjct: 75  RNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQI 132

Query: 410 ARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDF 452
               +  V+ GL YL     I++RD+KP NIL+   G + L DF
Sbjct: 133 LGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDF 176

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDHPFLPTL 371
           LG G  G V+           A+K + +     R+  +   +  EI     L H  +   
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKEIPE-----RDSRYSQPLHEEIALHKHLKHKNIVQY 84

Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKI-FREDSARFYAAEVVIGLEYLHCLGII 430
             SF  +  I +  +  PGG L ALL  +   +   E +  FY  +++ GL+YLH   I+
Sbjct: 85  LGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIV 144

Query: 431 YRDLKPENILL-QKDGHVVLTDFDLS 455
           +RD+K +N+L+    G + ++DF  S
Sbjct: 145 HRDIKGDNVLINTYSGVLKISDFGTS 170

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            ++ +  LG G  G V+  + +  G L A K +E     +  ++    +E EI++  DHP
Sbjct: 20  VWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK---SEEELEDYIVEIEILATCDHP 76

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           ++  L  ++     + ++ +FCPGG + A++ +   +   E   +    +++  L +LH 
Sbjct: 77  YIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHS 135

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDF 452
             II+RDLK  N+L+  +G + L DF
Sbjct: 136 KRIIHRDLKAGNVLMTLEGDIRLADF 161

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 28/182 (15%)

Query: 293 IQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR 352
           I  I    + +  +     K LG G +G+V        G   A+K M             
Sbjct: 3   IANIPNFEQSLK-NLVVSEKILGYGSSGTVVFQGSFQ-GRPVAVKRMLID------FCDI 54

Query: 353 ACIEREIMS-LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDK-----QPMKIFR 406
           A +E ++++   DHP +   Y S  T   + +  + C    L  L++      + +K+ +
Sbjct: 55  ALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC-NLNLQDLVESKNVSDENLKLQK 113

Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL-------------QKDGHVVLTDFD 453
           E +      ++  G+ +LH L II+RDLKP+NIL+              ++  ++++DF 
Sbjct: 114 EYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFG 173

Query: 454 LS 455
           L 
Sbjct: 174 LC 175

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 93.2 bits (232), Expect = 4e-21
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDH 365
                 +G G TG V L   + +G   A+K     +M  R +  R  +  E+  M    H
Sbjct: 47  LDSYVKIGEGSTGIVCLAREKHSGRQVAVK-----MMDLRKQQRRELLFNEVVIMRDYQH 101

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             +  +Y S+     + ++ +F  GG L  ++ +  +    E+        V+  L YLH
Sbjct: 102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLN---EEQIATVCEAVLQALAYLH 158

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDF 452
             G+I+RD+K ++ILL  DG V L+DF
Sbjct: 159 AQGVIHRDIKSDSILLTLDGRVKLSDF 185

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 92.3 bits (230), Expect = 5e-21
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 9/156 (5%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-- 359
           ++     +PI  LG G  G V  +    +G++ A+K +        N   +  +  ++  
Sbjct: 3   EVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIR----ATVNSQEQKRLLMDLDI 58

Query: 360 -MSLLDHPFLPTLYASFQTSTHICLITDFCPGG-ELFALLDKQPMKIFREDSARFYAAEV 417
            M  +D PF  T Y +      + +  +      + F        +   ED     A  +
Sbjct: 59  SMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSI 118

Query: 418 VIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDF 452
           V  LE+LH  L +I+RD+KP N+L+   G V + DF
Sbjct: 119 VKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDF 154

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 91.6 bits (228), Expect = 9e-21
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 18/151 (11%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAM------EKSVMLNRNKVHRACIEREIMS 361
           +   + +G G +G+V+       G+  A++ M      +K +++N         E  +M 
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIIN---------EILVMR 72

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              +P +     S+     + ++ ++  GG L  ++ +  M    E        E +  L
Sbjct: 73  ENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMD---EGQIAAVCRECLQAL 129

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
           E+LH   +I+RD+K +NILL  DG V LTDF
Sbjct: 130 EFLHSNQVIHRDIKSDNILLGMDGSVKLTDF 160

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYA 373
           LG G  G    V  +  GE+  MK + +     +    +   E ++M  L+HP +     
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLK---EVKVMRCLEHPNVLKFIG 74

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD 433
                  +  IT++  GG L  ++     +        F A ++  G+ YLH + II+RD
Sbjct: 75  VLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSF-AKDIASGMAYLHSMNIIHRD 133

Query: 434 LKPENILLQKDGHVVLTDFDLS 455
           L   N L++++ +VV+ DF L+
Sbjct: 134 LNSHNCLVRENKNVVVADFGLA 155

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 10/147 (6%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDH 365
           F  ++ LG G  GSV+    +  G++ A+K +     L         I +EI  M   D 
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQE-------IIKEISIMQQCDS 83

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +   Y S+  +T + ++ ++C  G +  ++  +  K   ED         + GLEYLH
Sbjct: 84  PHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEYLH 142

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDF 452
            +  I+RD+K  NILL  +GH  L DF
Sbjct: 143 FMRKIHRDIKAGNILLNTEGHAKLADF 169

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 89.7 bits (223), Expect = 4e-20
 Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 30/188 (15%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IM 360
           I     +  + +G G  G V   + +   +  A+K +        ++  R     E   +
Sbjct: 5   IDYKEIEVEEVVGRGAFGVVCKAKWRA--KDVAIKQI-------ESESERKAFIVELRQL 55

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL-DKQPMKIFREDSARFYAAEVVI 419
           S ++HP +  LY +      +CL+ ++  GG L+ +L   +P+  +    A  +  +   
Sbjct: 56  SRVNHPNIVKLYGA--CLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQ 113

Query: 420 GLEYLHCL---GIIYRDLKPENILLQKDGHVV-LTDFDLS-----FMTSCK-------PQ 463
           G+ YLH +    +I+RDLKP N+LL   G V+ + DF  +      MT+ K       P+
Sbjct: 114 GVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPE 173

Query: 464 VFYHAHVN 471
           VF  ++ +
Sbjct: 174 VFEGSNYS 181

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 88.0 bits (218), Expect = 2e-19
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 14/186 (7%)

Query: 283 HKRDNSSW----IAIQKITGSGEKI--------GLHHFKPIKPLGCGDTGSVHLVELQGA 330
           +K D+ ++    I +     + EK+         L H   ++             + +  
Sbjct: 27  NKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMD 86

Query: 331 GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCPG 390
                 ++ +  +  + + +    ++   M                   ++ +    C  
Sbjct: 87  EIWLKDESTDWPLS-SPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRK 145

Query: 391 GELFALLDKQPMKIFRE-DSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVL 449
             L   ++++     RE         ++   +E+LH  G+++RDLKP NI    D  V +
Sbjct: 146 ENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKV 205

Query: 450 TDFDLS 455
            DF L 
Sbjct: 206 GDFGLV 211

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 14/164 (8%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE--RE-- 358
           +  +  +  K +G G  G VH   L     + A+K++         ++     E  RE  
Sbjct: 16  LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75

Query: 359 IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           IMS L+HP +  LY          ++ +F P G+L+  L  +   I      R    ++ 
Sbjct: 76  IMSNLNHPNIVKLYGL--MHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRL-MLDIA 132

Query: 419 IGLEYLHCLG--IIYRDLKPENILLQKDG-----HVVLTDFDLS 455
           +G+EY+      I++RDL+  NI LQ           + DF LS
Sbjct: 133 LGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 87.8 bits (218), Expect = 3e-19
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 15/158 (9%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI---MSLL 363
            F+ ++ +G G  G V+       G+L A+K M+    +  ++     I++EI       
Sbjct: 25  IFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD----VTGDEEEE--IKQEINMLKKYS 78

Query: 364 DHPFLPTLYASF------QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
            H  + T Y +F           + L+ +FC  G +  L+        +E+   +   E+
Sbjct: 79  HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREI 138

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + GL +LH   +I+RD+K +N+LL ++  V L DF +S
Sbjct: 139 LRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 176

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 87.9 bits (218), Expect = 3e-19
 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLD 364
            F  ++ +G G  G+V+        E+ A+K M       ++      I +E+  +  L 
Sbjct: 55  LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMS--YSGKQSNEKWQDIIKEVRFLQKLR 112

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP        +       L+ ++C G    + L +   K  +E          + GL YL
Sbjct: 113 HPNTIQYRGCYLREHTAWLVMEYCLGS--ASDLLEVHKKPLQEVEIAAVTHGALQGLAYL 170

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDF 452
           H   +I+RD+K  NILL + G V L DF
Sbjct: 171 HSHNMIHRDVKAGNILLSEPGLVKLGDF 198

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 86.5 bits (215), Expect = 4e-19
 Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 356 EREIMSLLDHPFLPTLYASFQT--STHICLITDFCPGGELFALLDKQPMKIFREDSARFY 413
           E   + +  HP +  +  + Q+  + H  LIT + P G L+ +L +    +  +  A  +
Sbjct: 57  ECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKF 116

Query: 414 AAEVVIGLEYLHCLG--IIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK 461
           A ++  G+ +LH L   I    L   ++++ +D    ++  D+ F     
Sbjct: 117 ALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSP 166

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 86.6 bits (215), Expect = 4e-19
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E  ++    H  +        T+  + ++T +C G  L+  L     K   +      A 
Sbjct: 70  EVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDI-AR 127

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +   G++YLH   II+RDLK  NI L +D  V + DF L+
Sbjct: 128 QTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLA 167

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
           E        H  +     +  +  H+ +IT  C G  L++++    + +    + +  A 
Sbjct: 79  EVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQI-AQ 137

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           E+V G+ YLH  GI+++DLK +N+    +G VV+TDF L 
Sbjct: 138 EIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLF 176

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 83.9 bits (208), Expect = 4e-18
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL-DKQPMKIFREDSARFYA 414
           E  IM  L HP +     +     ++ ++T++   G L+ LL      +   E      A
Sbjct: 84  EVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMA 143

Query: 415 AEVVIGLEYLHCLG--IIYRDLKPENILLQKDGHVVLTDFDLS 455
            +V  G+ YLH     I++R+LK  N+L+ K   V + DF LS
Sbjct: 144 YDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS 186

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 83.6 bits (207), Expect = 5e-18
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 14/151 (9%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDHPFLPTL 371
           +G G   +V+           A   ++        K  R   + E   +  L HP +   
Sbjct: 34  IGRGSFKTVYKGLDTETTVEVAWCELQDR---KLTKSERQRFKEEAEMLKGLQHPNIVRF 90

Query: 372 YASFQTST----HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           Y S++++      I L+T+    G L   L +   K+ +    R +  +++ GL++LH  
Sbjct: 91  YDSWESTVKGKKCIVLVTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTR 148

Query: 428 G--IIYRDLKPENILLQ-KDGHVVLTDFDLS 455
              II+RDLK +NI +    G V + D  L+
Sbjct: 149 TPPIIHRDLKCDNIFITGPTGSVKIGDLGLA 179

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 356 EREIMSL--LDHPFLPTLYAS----FQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
           E E+ +   L H  +    AS      +ST + LIT +   G L+  L    +       
Sbjct: 50  ETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDT--VSC 107

Query: 410 ARFYAAEVVIGLEYLHCL--------GIIYRDLKPENILLQKDGHVVLTDFDLSFM 457
            R     +  GL +LH           I +RDLK +NIL++K+G   + D  L+ M
Sbjct: 108 LRI-VLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVM 162

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 81.0 bits (200), Expect = 6e-17
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 17/114 (14%)

Query: 356 EREI--MSLLDHPFLPTLYAS----FQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
           E EI    +L H  +    A+      T T + L++D+   G LF  L++  + +  E  
Sbjct: 84  EAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTV--EGM 141

Query: 410 ARFYAAEVVIGLEYLHC--------LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +  A     GL +LH           I +RDLK +NIL++K+G   + D  L+
Sbjct: 142 IKL-ALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 194

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 17/114 (14%)

Query: 356 EREI--MSLLDHPFLPTLYAS----FQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
           E EI    L+ H  +    A+      + T + LITD+   G L+  L    +    +  
Sbjct: 79  ETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDA--KSM 136

Query: 410 ARFYAAEVVIGLEYLHCL--------GIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +  A   V GL +LH           I +RDLK +NIL++K+G   + D  L+
Sbjct: 137 LKL-AYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 189

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)

Query: 314 LGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRA-CIEREIMSLLDHPFLPTLY 372
           +G G  G V+     G  +  A+KA       + ++       E ++ ++L HP +  L 
Sbjct: 15  IGIGGFGKVYRAFWIG--DEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALR 72

Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG---I 429
                  ++CL+ +F  GG L  +L  + +          +A ++  G+ YLH      I
Sbjct: 73  GVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDI---LVNWAVQIARGMNYLHDEAIVPI 129

Query: 430 IYRDLKPENILLQKDGHVV--------LTDFDLS 455
           I+RDLK  NIL+ +             +TDF L+
Sbjct: 130 IHRDLKSSNILILQKVENGDLSNKILKITDFGLA 163

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 27/169 (15%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + L + K ++ +G G  G+V+   L       A+K    +   NR        E+ I  +
Sbjct: 10  LDLDNLKLLELIGRGRYGAVYKGSLDE--RPVAVKVFSFA---NRQNFIN---EKNIYRV 61

Query: 363 --LDHPFLPTLYA-----SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAA 415
             ++H  +          +        L+ ++ P G L   L           S+   A 
Sbjct: 62  PLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDW---VSSCRLAH 118

Query: 416 EVVIGLEYLH---------CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            V  GL YLH            I +RDL   N+L++ DG  V++DF LS
Sbjct: 119 SVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLS 167

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 37/175 (21%), Positives = 60/175 (34%), Gaps = 39/175 (22%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAM---EKSVMLNRNKVHRACIEREI 359
                 + ++    G  G V   +L    E  A+K     +K    N  +V+        
Sbjct: 21  FQSMPLQLLEVKARGRFGCVWKAQLLN--EYVAVKIFPIQDKQSWQNEYEVY-------S 71

Query: 360 MSLLDHPFLPTLYASFQTSTHI----CLITDFCPGGELFALLDKQPMKIFR-----EDSA 410
           +  + H  +     + +  T +     LIT F   G L   L    +         E  A
Sbjct: 72  LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMA 131

Query: 411 RFYAAEVVIGLEYLHC----------LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           R        GL YLH             I +RD+K +N+LL+ +    + DF L+
Sbjct: 132 R--------GLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLA 178

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 24/182 (13%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR--ACIEREIMSLL 363
             +  I+ LG G   +V L       +  AMK      ++   + +   A  E  ++  +
Sbjct: 37  GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMK------VVKSAEHYTETALDEIRLLKSV 90

Query: 364 -----DHP---FLPTLYASFQTS----THICLITDFCPGGE-LFALLDKQPMKIFREDSA 410
                + P    +  L   F+ S    THIC++ +    G  L   + K   +       
Sbjct: 91  RNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFE--VLGHHLLKWIIKSNYQGLPLPCV 148

Query: 411 RFYAAEVVIGLEYLH-CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAH 469
           +    +V+ GL+YLH    II+ D+KPENILL  +   +      +              
Sbjct: 149 KKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGS 208

Query: 470 VN 471
             
Sbjct: 209 AV 210

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 14/158 (8%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQG----AGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
            H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+ 
Sbjct: 10  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILK 66

Query: 362 LLDHPFLPTLYA--SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEV 417
            L H  +             ++ LI ++ P G L   L K   +I   D  +   Y +++
Sbjct: 67  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQI 123

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 124 CKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 14/158 (8%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQG----AGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
            H K ++ LG G+ GSV +          GE+ A+K ++ S   +     R   E EI+ 
Sbjct: 41  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILK 97

Query: 362 LLDHPFLPTLYA--SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEV 417
            L H  +             ++ LI ++ P G L   L K   +I   D  +   Y +++
Sbjct: 98  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI---DHIKLLQYTSQI 154

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             G+EYL     I+RDL   NIL++ +  V + DF L+
Sbjct: 155 CKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 192

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 4/140 (2%)

Query: 313 PLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLY 372
             G                   A+  ++   +L  + +         +S +D P +  + 
Sbjct: 38  FHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVL 97

Query: 373 ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYR 432
               T     ++ ++  GG L  + D  P        A      +    +  H  G+   
Sbjct: 98  DVVHTRAGGLVVAEWIRGGSLQEVADTSPS----PVGAIRAMQSLAAAADAAHRAGVALS 153

Query: 433 DLKPENILLQKDGHVVLTDF 452
              P  + +  DG VVL   
Sbjct: 154 IDHPSRVRVSIDGDVVLAYP 173

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 350 VHRACIEREIMSLLDHPFLPTLYASFQTSTHIC-----LITDFCPGGELFALLDKQPMKI 404
              A  ER+ ++ + HP +  ++   + +         ++ ++  G  L      Q + +
Sbjct: 123 QAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSK-GQKLPV 181

Query: 405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
                A  Y  E++  L YLH +G++Y DLKPENI+L ++  + L D 
Sbjct: 182 ---AEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEEQ-LKLIDL 225

>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Length = 227

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 45/142 (31%)

Query: 81  VITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFML 140
            ITD       I++A+D+F  ++ Y REE++G++   +    + +               
Sbjct: 3   SITDL---QGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAY------------- 46

Query: 141 YFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNL 200
               +W                              +        +  N  K G ++W  
Sbjct: 47  -IRDMW----------------------------RTISRGNIWQGEFCNRRKDGTRYWVD 77

Query: 201 FHLQPMRDHKGELQYFIGVQLD 222
             + P+ D+ G+ + +I ++ D
Sbjct: 78  STIVPLMDNAGKPRQYISIRRD 99

>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Length = 227

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 51/171 (29%)

Query: 58  ERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSF 117
            ++    Q   L   ++   +  ++TD       II+A+ +    +     E+LG++ S 
Sbjct: 102 AQKEAEAQLARLKQAMDANSEMILLTDR---AGRIIYANPALCRFSGMAEGELLGQSPSI 158

Query: 118 LELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAV 177
           L               S         A+                             +A+
Sbjct: 159 L--------------DSPLADQETLAAMQ----------------------------EAL 176

Query: 178 REQREITVQLINYTKSGKK------FWNLFHLQPMRDHKGELQYFIGVQLD 222
           +  +  + +L+N  ++G        +W      P+      L  ++ +Q D
Sbjct: 177 QAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           REI  L  L+HP +  L     T   + L+ +F    +L   +D   +        + Y 
Sbjct: 51  REISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYL 109

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++ GL + H   +++RDLKP+N+L+  +G + L DF L+
Sbjct: 110 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 3/149 (2%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
                + +G G+ G V    L+    L A+K+  +++    +   +   E  I+    HP
Sbjct: 115 DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLP--PDLKAKFLQEARILKQYSHP 172

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  L         I ++ +   GG+    L  +  ++  +   +    +   G+EYL  
Sbjct: 173 NIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQM-VGDAAAGMEYLES 231

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I+RDL   N L+ +   + ++DF +S
Sbjct: 232 KCCIHRDLAARNCLVTEKNVLKISDFGMS 260

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 7/154 (4%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLL 363
            + K I+ LG G  G V L       +        K++  +    HR+  ++E  I+  L
Sbjct: 31  RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL 90

Query: 364 DHPFLPTLYA--SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            H  +           +  + L+ ++ P G L   L +  + + +      +A ++  G+
Sbjct: 91  YHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQ---LLLFAQQICEGM 147

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            YLH    I+RDL   N+LL  D  V + DF L+
Sbjct: 148 AYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLA 181

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 11/162 (6%)

Query: 298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIER 357
           GS E    + ++  + +G G  G ++L     AGE  A+K +E      + K  +  IE 
Sbjct: 1   GSMELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIK-LEC----VKTKHPQLHIES 55

Query: 358 EIMSLLDH-PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           +I  ++     +PT+        +  ++ +   G  L  L +    K F   +    A +
Sbjct: 56  KIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRK-FSLKTVLLLADQ 113

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGH---VVLTDFDLS 455
           ++  +EY+H    I+RD+KP+N L+        V + DF L+
Sbjct: 114 MISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA 155

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 14/158 (8%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELY----AMKAMEKSVMLNRNKVHRACIEREIMS 361
            H K I  LG G+ GSV L      G+      A+K ++ S    +    R   E +I+ 
Sbjct: 23  RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EIQILK 79

Query: 362 LLDHPFLPTLYA-SFQTSTH-ICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEV 417
            L   F+      S+      + L+ ++ P G L   L +   ++   D++R   Y++++
Sbjct: 80  ALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARL---DASRLLLYSSQI 136

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             G+EYL     ++RDL   NIL++ + HV + DF L+
Sbjct: 137 CKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 174

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 65.3 bits (160), Expect = 6e-12
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
           ++ I  +G G  G V     +  G++ A+K   K +    + V +    REI  L  L H
Sbjct: 5   YEKIGKIGEGSYGVVFKCRNRDTGQIVAIK---KFLESEDDPVIKKIALREIRMLKQLKH 61

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P L  L   F+    + L+ ++C    +   LD+   +   E   +    + +  + + H
Sbjct: 62  PNLVNLLEVFRRKRRLHLVFEYCDH-TVLHELDRYQ-RGVPEHLVKSITWQTLQAVNFCH 119

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDL 454
               I+RD+KPENIL+ K   + L DF  
Sbjct: 120 KHNCIHRDVKPENILITKHSVIKLCDFGF 148

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 13/155 (8%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH- 365
           H+K  + +G G  G +         +  A+K  E      R+   +   E     LL   
Sbjct: 11  HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIK-FEP----RRSDAPQLRDEYRTYKLLAGC 65

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             +P +Y   Q   H  L+ D   G  L  LLD    + F   +    A +++  ++ +H
Sbjct: 66  TGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIH 123

Query: 426 CLGIIYRDLKPENILL----QKDGHVV-LTDFDLS 455
              ++YRD+KP+N L+     K+ +++ + DF + 
Sbjct: 124 EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV 158

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 9/156 (5%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLL 363
              K I+ LG G  G V L      G+    +   KS+       H A +++E  I+  L
Sbjct: 21  RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL 80

Query: 364 DHPFLPTLYA--SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF--YAAEVVI 419
            H  +       +      I LI +F P G L   L K   KI   +  +   YA ++  
Sbjct: 81  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKI---NLKQQLKYAVQICK 137

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           G++YL     ++RDL   N+L++ +  V + DF L+
Sbjct: 138 GMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLT 173

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 24/184 (13%)

Query: 282 PHKRDNSSWIAIQKITGSG-EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAME 340
              +D S    +    G G ++     +   K +G G  G V+  +L  +GEL A+K   
Sbjct: 29  SRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--- 85

Query: 341 KSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST------HICLITDFCPGGELF 394
             V+ ++   +R   E +IM  LDH  +  L   F +S       ++ L+ D+ P   ++
Sbjct: 86  -KVLQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVY 140

Query: 395 ALLD-----KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV- 448
            +       KQ +        + Y  ++   L Y+H  GI +RD+KP+N+LL  D  V+ 
Sbjct: 141 RVARHYSRAKQTLP---VIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLK 197

Query: 449 LTDF 452
           L DF
Sbjct: 198 LCDF 201

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           REI  L  L H  +  LY    T   + L+ +     +L  LLD          +A+ + 
Sbjct: 49  REISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGG-LESVTAKSFL 106

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++ G+ Y H   +++RDLKP+N+L+ ++G + + DF L+
Sbjct: 107 LQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH- 365
           +F+  K +GCG+ G + L +     E  A+K +E      +++  +  +E      L   
Sbjct: 10  NFRVGKKIGCGNFGELRLGKNLYTNEYVAIK-LEP----MKSRAPQLHLEYRFYKQLGSG 64

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             +P +Y       +  ++ +   G  L  L D    + F   +    A +++  +EY+H
Sbjct: 65  DGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVH 122

Query: 426 CLGIIYRDLKPENILL----QKDGHVV-LTDFDLS 455
              +IYRD+KPEN L+     K   V+ + DF L+
Sbjct: 123 SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALA 157

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 62.2 bits (152), Expect = 7e-11
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           REI  L  L HP + +L     +   + L+ +F    +L  +LD+      ++   + Y 
Sbjct: 68  REISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENK-TGLQDSQIKIYL 125

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++ G+ + H   I++RDLKP+N+L+  DG + L DF L+
Sbjct: 126 YQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLA 166

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 62.2 bits (152), Expect = 8e-11
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 8/150 (5%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDH 365
           +  +  LG G   +V+  + +    L A+K   +  + +        I RE+  L  L H
Sbjct: 4   YIKLDKLGEGTYATVYKGKSKLTDNLVALK---EIRLEHEEGAPCTAI-REVSLLKDLKH 59

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             + TL+    T   + L+ ++    +L   LD     I    + + +  +++ GL Y H
Sbjct: 60  ANIVTLHDIIHTEKSLTLVFEYLDK-DLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCH 117

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              +++RDLKP+N+L+ + G + L DF L+
Sbjct: 118 RQKVLHRDLKPQNLLINERGELKLADFGLA 147

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 62.2 bits (152), Expect = 9e-11
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           REI  L  L H  L  L    +      L+ +F     +   L+  P         + Y 
Sbjct: 73  REIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDH-TILDDLELFP-NGLDYQVVQKYL 130

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++ G+ + H   II+RD+KPENIL+ + G V L DF  +
Sbjct: 131 FQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFA 171

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           REI  L  L HP +  L  +F   ++I L+ DF    +L  ++    +        + Y 
Sbjct: 61  REIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLV-LTPSHIKAYM 118

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
              + GLEYLH   I++RDLKP N+LL ++G + L DF L
Sbjct: 119 LMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGL 158

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           REI  L  L H  +  L+    +   + L+ +FC   +L    D         +  + + 
Sbjct: 50  REICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGD-LDPEIVKSFL 107

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++ GL + H   +++RDLKP+N+L+ ++G + L +F L+
Sbjct: 108 FQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLA 148

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DH 365
            F+  + +G G  G ++L       E  A+K +E      + K  +   E +I  +L   
Sbjct: 8   KFRLGRKIGSGSFGEIYLGTNIQTNEEVAIK-LEN----VKTKHPQLLYESKIYRILQGG 62

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             +P +        +  L+ D   G  L  L +    K     +    A +++  +E++H
Sbjct: 63  TGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCSRK-LSLKTVLMLADQMINRVEFVH 120

Query: 426 CLGIIYRDLKPENILLQKDGH---VVLTDFDLS 455
               ++RD+KP+N L+        V + DF L+
Sbjct: 121 SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLA 153

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 14/155 (9%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMK-----AMEKSVMLNRNKVHRACIEREIM 360
                   LG G  G V+    +      A+K      ME    L          E  +M
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLK---------EAAVM 270

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
             + HP L  L           +IT+F   G L   L +   +        + A ++   
Sbjct: 271 KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSA 330

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +EYL     I+R+L   N L+ ++  V + DF LS
Sbjct: 331 MEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLS 365

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI----FREDSA 410
           REI  +  L H  +  LY    T   + L+ +F    +L   +D + +         +  
Sbjct: 52  REISLMKELKHENIVRLYDVIHTENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLV 110

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +++  +++ GL + H   I++RDLKP+N+L+ K G + L DF L+
Sbjct: 111 KYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLA 155

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 357 REIMSLL------DHPFLPTLY-----ASFQTSTHICLITDFCPGGELFALLDKQPMKIF 405
           RE+ +LL      +HP +  L      +       + L+ +     +L   LDK P    
Sbjct: 60  REV-ALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGL 117

Query: 406 REDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
             ++ +    + + GL++LH   I++RDLKPENIL+   G V L DF L
Sbjct: 118 PAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL 166

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELY---AMKAMEKSVMLNRNKVHRACIEREIMSLL 363
             + ++ LG G  G V   E           A+K ++  V+     +     E   M  L
Sbjct: 19  DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL 78

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           DH  L  LY     +  + ++T+  P G L   L K          +R+ A +V  G+ Y
Sbjct: 79  DHRNLIRLYG-VVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRY-AVQVAEGMGY 136

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           L     I+RDL   N+LL     V + DF L 
Sbjct: 137 LESKRFIHRDLAARNLLLATRDLVKIGDFGLM 168

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 24/167 (14%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LD 364
            ++ + P+G G  GSV        G   A+K   K     ++ +H     RE+  L  + 
Sbjct: 30  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVK---KLSRPFQSIIHAKRTYRELRLLKHMK 86

Query: 365 HP--------FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           H         F P    S +    + L+T    G +L  ++  Q +    +D  +F   +
Sbjct: 87  HENVIGLLDVFTPA--RSLEEFNDVYLVTHLM-GADLNNIVKCQKLT---DDHVQFLIYQ 140

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-----FMT 458
           ++ GL+Y+H   II+RDLKP N+ + +D  + + DF L+      MT
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMT 187

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 10/155 (6%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELY----AMKAMEKSVMLNRNKVHRACI-EREIM 360
             FK IK LG G  G+V+       GE      A+K + ++      K ++  + E  +M
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVM 71

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
           + +D+P +  L      ++ + LIT   P G L   + +    I  +    +   ++  G
Sbjct: 72  ASVDNPHVCRLLG-ICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNW-CVQIAKG 129

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + YL    +++RDL   N+L++   HV +TDF L+
Sbjct: 130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 19/154 (12%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM---SLL 363
            ++ ++ LG G    V         E   +K +          V +  I+REI    +L 
Sbjct: 37  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKIL--------KPVKKKKIKREIKILENLR 88

Query: 364 DHPFLPTLYASFQ--TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
             P + TL    +   S    L+ +     +      KQ  +   +   RFY  E++  L
Sbjct: 89  GGPNIITLADIVKDPVSRTPALVFEHVNNTDF-----KQLYQTLTDYDIRFYMYEILKAL 143

Query: 422 EYLHCLGIIYRDLKPENILL-QKDGHVVLTDFDL 454
           +Y H +GI++RD+KP N+++  +   + L D+ L
Sbjct: 144 DYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGL 177

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 6/150 (4%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
              K  K LG G  G V +       ++ A+K M+   M     +     E  +M  L H
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKV-AVKTMKPGSMSVEAFLA----EANVMKTLQH 242

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             L  L+A   T   I +IT+F   G L   L               ++A++  G+ ++ 
Sbjct: 243 DKLVKLHAVV-TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE 301

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               I+RDL+  NIL+       + DF L+
Sbjct: 302 QRNYIHRDLRAANILVSASLVCKIADFGLA 331

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 10/148 (6%)

Query: 312 KPLGCGDTGSVHLVELQGAGELY--AMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPF 367
           K LG G+ G+V     Q    +   A+K ++       +   +  +  E  +M  LD+P+
Sbjct: 23  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN---DPALKDELLAEANVMQQLDNPY 79

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  +      +    L+ +    G L   L +   +  ++ +      +V +G++YL   
Sbjct: 80  IVRMIG-ICEAESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES 136

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
             ++RDL   N+LL    +  ++DF LS
Sbjct: 137 NFVHRDLAARNVLLVTQHYAKISDFGLS 164

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 14/155 (9%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMK-----AMEKSVMLNRNKVHRACIEREIM 360
                   LG G  G V+    +      A+K      ME    L          E  +M
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLK---------EAAVM 63

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
             + HP L  L           +IT+F   G L   L +   +        + A ++   
Sbjct: 64  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSA 123

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +EYL     I+RDL   N L+ ++  V + DF LS
Sbjct: 124 MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 158

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 29/176 (16%)

Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR-ACIERE 358
           GE      +  ++ LG G   +V L +        AMK     ++         A  E +
Sbjct: 13  GEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMK-----IVRGDKVYTEAAEDEIK 67

Query: 359 IMSLL--------DHPFLP---TLYASFQ----TSTHICLITDFCPGGELFALLDKQPMK 403
           ++  +        D         L   F        H+ ++ +   G  L AL+ K   +
Sbjct: 68  LLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHR 126

Query: 404 IFREDSARFYAAEVVIGLEYLH-CLGIIYRDLKPENILL------QKDGHVVLTDF 452
                  +  + ++++GL+Y+H   GII+ D+KPEN+L+      +    + + D 
Sbjct: 127 GIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADL 182

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 59.1 bits (144), Expect = 9e-10
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 13/109 (11%)

Query: 357 REIMSLL------DHPFLPTLY-----ASFQTSTHICLITDFCPGGELFALLDKQPMKIF 405
           RE+ ++L      +HP +  L+     +     T + L+ +     +L   LDK P    
Sbjct: 60  REV-AVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGV 117

Query: 406 REDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
             ++ +    +++ GL++LH   +++RDLKP+NIL+   G + L DF L
Sbjct: 118 PTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGL 166

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 356 ERE--IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ-PMKIFREDSARF 412
           +RE      L  P +  ++   +    + +      G +L A+L +Q P+   R   A  
Sbjct: 82  QREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPR---AVA 138

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
              ++   L+  H  G  +RD+KPENIL+  D    L DF
Sbjct: 139 IVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDF 178

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS--LLDHPFL 368
           +  LG G   +V+L E        A+KA+          + R   ERE+ +   L H  +
Sbjct: 16  VDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKR--FEREVHNSSQLSHQNI 73

Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQ-PMKIFREDSARFYAAEVVIGLEYLHCL 427
            ++    +      L+ ++  G  L   ++   P+ +   D+A  +  +++ G+++ H +
Sbjct: 74  VSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSV---DTAINFTNQILDGIKHAHDM 130

Query: 428 GIIYRDLKPENILLQKDGHVVLTDF 452
            I++RD+KP+NIL+  +  + + DF
Sbjct: 131 RIVHRDIKPQNILIDSNKTLKIFDF 155

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 312 KPLGCGDTGSVHLVELQGAGELY--AMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLP 369
             LGCG+ GSV     +   +    A+K +++       +      E +IM  LD+P++ 
Sbjct: 342 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMR--EAQIMHQLDNPYIV 399

Query: 370 TLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGI 429
            L      +  + L+ +   GG L   L  +  +I   + A     +V +G++YL     
Sbjct: 400 RLIG-VCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAEL-LHQVSMGMKYLEEKNF 457

Query: 430 IYRDLKPENILLQKDGHVVLTDFDLS 455
           ++R+L   N+LL    +  ++DF LS
Sbjct: 458 VHRNLAARNVLLVNRHYAKISDFGLS 483

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
              +    LG G  G V +    G   + A+K ++   M           E ++M  L H
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRV-AIKTLKPGTM----SPEAFLQEAQVMKKLRH 238

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             L  LYA   +   I ++T++   G L   L  +  K  R       AA++  G+ Y+ 
Sbjct: 239 EKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE 297

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +  ++RDL+  NIL+ ++    + DF L+
Sbjct: 298 RMNYVHRDLRAANILVGENLVCKVADFGLA 327

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 10/155 (6%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELY---AMKAMEKSVMLNRNKVHRACIERE--IM 360
                 K +G GD+G V    L+  G+     A+KA++        +  R     E  IM
Sbjct: 49  SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYT----ERQRRDFLSEASIM 104

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
              DHP +  L           ++T++   G L   L     +             V  G
Sbjct: 105 GQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGM-LRGVGAG 163

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + YL  LG ++RDL   N+L+  +    ++DF LS
Sbjct: 164 MRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLS 198

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
              +    LG G  G V +    G   + A+K ++   M           E ++M  L H
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRV-AIKTLKPGTM----SPEAFLQEAQVMKKLRH 321

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             L  LYA   +   I ++T++   G L   L  +  K  R       AA++  G+ Y+ 
Sbjct: 322 EKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE 380

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +  ++RDL+  NIL+ ++    + DF L+
Sbjct: 381 RMNYVHRDLRAANILVGENLVCKVADFGLA 410

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 27/162 (16%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMK---AMEKSVMLNRNKVHRACIEREIMSL- 362
            +  +  +G G  G V            A+K     E      R         REI  L 
Sbjct: 28  RYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQR-------TLREIKILL 80

Query: 363 -LDHP--------FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFY 413
              H                  +    + ++ D     +L+ LL  Q +     D   ++
Sbjct: 81  RFRHENIIGINDIIRAPTIEQMK---DVYIVQDLM-ETDLYKLLKTQHLS---NDHICYF 133

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             +++ GL+Y+H   +++RDLKP N+LL     + + DF L+
Sbjct: 134 LYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA 175

>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} Length = 124

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 45/142 (31%)

Query: 81  VITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFML 140
           V+TD       II  +     L  Y++E+ +G+  + L +   T                
Sbjct: 21  VVTDL---QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHI------------- 64

Query: 141 YFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNL 200
               +                              AV  Q + T ++    K G   W  
Sbjct: 65  -TSEVI----------------------------SAVENQGKWTGEIRMLHKDGHIGWIE 95

Query: 201 FHLQPMRDHKGELQYFIGVQLD 222
               P+     ++   +G+  D
Sbjct: 96  SMCVPIYGENYQMVGALGINRD 117

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 24/167 (14%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LD 364
            ++ ++P+G G  G+V        G   A+K   K     ++++      RE+  L  + 
Sbjct: 26  VYRDLQPVGSGAYGAVCSAVDGRTGAKVAIK---KLYRPFQSELFAKRAYRELRLLKHMR 82

Query: 365 HP--------FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           H         F P    +    T   L+  F  G +L  L+  + +    ED  +F   +
Sbjct: 83  HENVIGLLDVFTPD--ETLDDFTDFYLVMPFM-GTDLGKLMKHEKLG---EDRIQFLVYQ 136

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL-----SFMT 458
           ++ GL Y+H  GII+RDLKP N+ + +D  + + DF L     S MT
Sbjct: 137 MLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMT 183

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF 452
             A+    L + H  GII+RD+KP NI++     V + DF
Sbjct: 121 VIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDF 160

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           ++ +G G  G VHL       ++ A+K + +  M +         E E+M  L HP L  
Sbjct: 13  VQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAM-SEEDFIE---EAEVMMKLSHPKLVQ 67

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           LY        ICL+T+F   G L   L  Q      E        +V  G+ YL    +I
Sbjct: 68  LYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGM-CLDVCEGMAYLEEACVI 126

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N L+ ++  + ++DF ++
Sbjct: 127 HRDLAARNCLVGENQVIKVSDFGMT 151

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 314 LGCGDTGSVHLVELQGAGELY--AMKAM-EKSVMLNRNKVHRACIEREIMSLLDHPFLPT 370
           LGCG+ GSV     +   +    A+K + + +   +  ++ R   E +IM  LD+P++  
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMR---EAQIMHQLDNPYIVR 74

Query: 371 LYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGII 430
           L    Q    + L+ +   GG L   L  +  +I   + A     +V +G++YL     +
Sbjct: 75  LIGVCQAEA-LMLVMEMAGGGPLHKFLVGKREEIPVSNVAEL-LHQVSMGMKYLEEKNFV 132

Query: 431 YRDLKPENILLQKDGHVVLTDFDLS 455
           +RDL   N+LL    +  ++DF LS
Sbjct: 133 HRDLAARNVLLVNRHYAKISDFGLS 157

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 23/167 (13%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLD 364
            ++ +KP+G G  G V            A+K   K     +N+ H     RE+  M  ++
Sbjct: 63  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIK---KLSRPFQNQTHAKRAYRELVLMKCVN 119

Query: 365 HPFLPTLY------ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           H  + +L        + +    + L+ +      L  ++ +  +     +   +   +++
Sbjct: 120 HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVI-QMELD---HERMSYLLYQML 174

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-------FMT 458
            G+++LH  GII+RDLKP NI+++ D  + + DF L+        MT
Sbjct: 175 CGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT 221

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 21/169 (12%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAG--------ELYAMK--------AMEKSVMLNRNKV 350
            +K        + G ++                + +++K          E++      K 
Sbjct: 43  QWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKP 102

Query: 351 HRACIEREIMSLLDHPFLPTLYAS-FQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
            +    +++ S      +PT          +  L+     G  L + LD  P  +  E S
Sbjct: 103 LQVNKWKKLYST-PLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERS 160

Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILL--QKDGHVVLTDFDLSF 456
               A  ++  LE+LH    ++ ++  ENI +  +    V L  +  +F
Sbjct: 161 VLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAF 209

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY----AMKAMEKSVMLNRNKVHRACI-EREIMSLLDH 365
           IK LG G  G+V+       GE      A+K + ++      K ++  + E  +M+ +D+
Sbjct: 20  IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDN 76

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +  L      ++ + LIT   P G L   + +    I  +    +   ++  G+ YL 
Sbjct: 77  PHVCRLLG-ICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNW-CVQIAKGMNYLE 134

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              +++RDL   N+L++   HV +TDF L+
Sbjct: 135 DRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 33/191 (17%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMK---AMEKSVMLNRNKVHRACIEREIMSL- 362
            F+    LG G  G V     +  GE+ A+K     +K +   R         REI  L 
Sbjct: 12  DFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALR-------TLREIKILK 64

Query: 363 -LDHP--------FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFY 413
              H           P  + +F     + +I +     +L  ++  Q +    +D  +++
Sbjct: 65  HFKHENIITIFNIQRPDSFENFN---EVYIIQELM-QTDLHRVISTQMLS---DDHIQYF 117

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGF 473
             + +  ++ LH   +I+RDLKP N+L+  +  + + DF L+ +                
Sbjct: 118 IYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQS 177

Query: 474 YFIMYKWLTGY 484
                  +  +
Sbjct: 178 G------MVEF 182

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 19/109 (17%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG----ELFALLDKQP------MKIF 405
           E ++M+   H  L  L         +CL+  + P G     L  L    P       KI 
Sbjct: 80  EIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIA 139

Query: 406 REDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
            + +A         G+ +LH    I+RD+K  NILL +     ++DF L
Sbjct: 140 -QGAAN--------GINFLHENHHIHRDIKSANILLDEAFTAKISDFGL 179

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 20/111 (18%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGEL-FALLDKQP----------MKI 404
           E E +S   HP L +L         + LI  +   G L   L               ++I
Sbjct: 85  EIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEI 144

Query: 405 FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               +AR        GL YLH   II+RD+K  NILL ++    +TDF +S
Sbjct: 145 C-IGAAR--------GLHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS 186

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 9/155 (5%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELY----AMKAMEKSVMLN-RNKVHRACIEREIM 360
                 K +G G+ G V+   L+ +        A+K ++       R        E  IM
Sbjct: 44  SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLG---EAGIM 100

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
               H  +  L         + +IT++   G L   L ++  +             +  G
Sbjct: 101 GQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGM-LRGIAAG 159

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++YL  +  ++RDL   NIL+  +    ++DF LS
Sbjct: 160 MKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLS 194

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 357 REIMSL--LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYA 414
           RE+  L  L H  +  L +    +  + LI ++    +L   +DK           + + 
Sbjct: 82  REVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAEN-DLKKYMDK--NPDVSMRVIKSFL 138

Query: 415 AEVVIGLEYLHCLGIIYRDLKPENILL-----QKDGHVVLTDFDL 454
            +++ G+ + H    ++RDLKP+N+LL      +   + + DF L
Sbjct: 139 YQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 24/180 (13%)

Query: 285 RDNSSWIAIQKITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM 344
            D +  I +    G   +     +   K +G G  G V   +L  + E+    A+ K V+
Sbjct: 19  DDPNKVIKVLASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVESDEV----AI-KKVL 73

Query: 345 LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH------ICLITDFCPGGELFALLD 398
            ++   +R   E +IM ++ HP +  L A F ++        + L+ ++ P   ++    
Sbjct: 74  QDKRFKNR---ELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPE-TVYRASR 129

Query: 399 -----KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV-LTDF 452
                KQ M        + Y  +++  L Y+H +GI +RD+KP+N+LL     V+ L DF
Sbjct: 130 HYAKLKQTMP---MLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDF 186

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 14/160 (8%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR-ACIEREIMSLL------ 363
           I+ +G G  G V L +     + YA+K     V+ N  K  R A IE +I+  +      
Sbjct: 40  IRKMGDGTFGRVLLCQHIDNKKYYAVK-----VVRNIKKYTRSAKIEADILKKIQNDDIN 94

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           ++  +   +  F    H+CLI +   G  L+ ++ +     F  +  + Y  E++  L Y
Sbjct: 95  NNNIV-KYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNY 152

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQ 463
           L  + + + DLKPENILL                   K Q
Sbjct: 153 LRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQ 192

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACI-EREIMSLLDHPFLP 369
           ++ +G G+ G V L + +G     A+K       +  +   +A + E  +M+ L H  L 
Sbjct: 26  LQTIGKGEFGDVMLGDYRG--NKVAVK------CIKNDATAQAFLAEASVMTQLRHSNLV 77

Query: 370 TLYAS-FQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
            L     +    + ++T++   G L   L  +   +   D    ++ +V   +EYL    
Sbjct: 78  QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN 137

Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLS 455
            ++RDL   N+L+ +D    ++DF L+
Sbjct: 138 FVHRDLAARNVLVSEDNVAKVSDFGLT 164

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 29/175 (16%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN------RNKVHRACIEREIM 360
            +   + +  G  G+V    +   G   A+K +  +V          +      + REI 
Sbjct: 23  PYTVQRFISSGSYGAVCAG-VDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIR 81

Query: 361 SL--LDHP--------FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSA 410
            L    HP        F+     +      + L+T+     +L  ++      +      
Sbjct: 82  LLNHFHHPNILGLRDIFVHFEEPAMH---KLYLVTELM-RTDLAQVI-HDQRIVISPQHI 136

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-------FMT 458
           +++   +++GL  LH  G+++RDL P NILL  +  + + DF+L+         T
Sbjct: 137 QYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTADANKT 191

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 8/154 (5%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELY---AMKAMEKSVML-NRNKVHRACIEREIMS 361
            +    K +G G+ G V    L+   +     A+K ++       R        E  IM 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG---EASIMG 101

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
             DHP +  L      S  + ++T++   G L + L K   +             +  G+
Sbjct: 102 QFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGM-LRGIASGM 160

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +YL  +G ++RDL   NIL+  +    ++DF L 
Sbjct: 161 KYLSDMGYVHRDLAARNILINSNLVCKVSDFGLG 194

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 20/159 (12%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LD 364
            +     +G G  GSV     + +GE  A+K + +     ++++      RE++ L  + 
Sbjct: 25  TYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF---QSEIFAKRAYRELLLLKHMQ 81

Query: 365 HP--------FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
           H         F P   +S +      L+  F    +L  ++         E+  ++   +
Sbjct: 82  HENVIGLLDVFTPA--SSLRNFYDFYLVMPFM-QTDLQKIM-GLKFS---EEKIQYLVYQ 134

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           ++ GL+Y+H  G+++RDLKP N+ + +D  + + DF L+
Sbjct: 135 MLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA 173

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMK-----AMEKSVMLNRNKVHRACIEREIM 360
                +K LG G  G V L + +G  ++ A+K     +M +              E + M
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDV-AVKMIKEGSMSEDEFFQ---------EAQTM 57

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
             L HP L   Y        I ++T++   G L   L      +           +V  G
Sbjct: 58  MKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEM-CYDVCEG 116

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + +L     I+RDL   N L+ +D  V ++DF ++
Sbjct: 117 MAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMT 151

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY---AMKAMEKSVML-NRNKVHRACIEREIMSLLDHP 366
            + +G G  G VH              A+K  +       R K  +   E   M   DHP
Sbjct: 20  GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQ---EALTMRQFDHP 76

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  L     T   + +I + C  GEL + L  +   +       + A ++   L YL  
Sbjct: 77  HIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKYSLDLASLILY-AYQLSTALAYLES 134

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              ++RD+   N+L+  +  V L DF LS
Sbjct: 135 KRFVHRDIAARNVLVSSNDCVKLGDFGLS 163

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELY----AMKAM-EKSVMLNRNKVHRACIEREIM 360
              + +K LG G  G+VH       GE       +K + +KS   +   V         +
Sbjct: 13  TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTD---HMLAI 69

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
             LDH  +  L       + + L+T + P G L   + +    +  +    +   ++  G
Sbjct: 70  GSLDHAHIVRLLG-LCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNW-GVQIAKG 127

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + YL   G+++R+L   N+LL+    V + DF ++
Sbjct: 128 MYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVA 162

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 22/159 (13%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRA----CIEREIMSLL 363
           F     LG G  G V+   L   G L A+K       L   +          E E++S+ 
Sbjct: 32  FSNKNILGRGGFGKVYKGRLAD-GTLVAVK------RLKEERTQGGELQFQTEVEMISMA 84

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGEL-FALLDKQPMKIFREDSARFY----AAEVV 418
            H  L  L     T T   L+  +   G +   L ++   +   +   R      +A   
Sbjct: 85  VHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSAR-- 142

Query: 419 IGLEYLHC---LGIIYRDLKPENILLQKDGHVVLTDFDL 454
            GL YLH      II+RD+K  NILL ++   V+ DF L
Sbjct: 143 -GLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGL 180

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 16/155 (10%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV---MLNRNKVHRACI-EREIMS 361
              K ++ +G G+ G V L + +G             V    +  +   +A + E  +M+
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDYRG-----------NKVAVKCIKNDATAQAFLAEASVMT 241

Query: 362 LLDHPFLPTLYA-SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
            L H  L  L     +    + ++T++   G L   L  +   +   D    ++ +V   
Sbjct: 242 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 301

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +EYL     ++RDL   N+L+ +D    ++DF L+
Sbjct: 302 MEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLT 336

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMK-----AMEKSVMLNRNKVHRACIEREIM 360
              K ++ LG G  G V +    G  ++ A+K     +M     L          E  +M
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKV-AVKSLKQGSMSPDAFLA---------EANLM 62

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
             L H  L  LYA   T   I +IT++   G L   L          +     AA++  G
Sbjct: 63  KQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEG 121

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           + ++     I+RDL+  NIL+       + DF L+
Sbjct: 122 MAFIEERNYIHRDLRAANILVSDTLSCKIADFGLA 156

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 12/108 (11%)

Query: 357 REIMSL--LDHPFLPTLY--------ASFQTSTHICLITDFCPGGELFALLDKQPMKIFR 406
           REI  L  L H  +  L            +    I L+ DFC   +L  LL    +K F 
Sbjct: 65  REIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVK-FT 122

Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL 454
               +     ++ GL Y+H   I++RD+K  N+L+ +DG + L DF L
Sbjct: 123 LSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGL 170

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 15/153 (9%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV---MLNRNKVHRACI----EREIMSLL 363
            + +G G  G V+       G L      +       LNR            E  IM   
Sbjct: 30  NEVIGRGHFGCVYH------GTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF 83

Query: 364 DHPFLPTLYA-SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
            HP + +L     ++     ++  +   G+L   +  +      +D   F   +V  G++
Sbjct: 84  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF-GLQVAKGMK 142

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YL     ++RDL   N +L +   V + DF L+
Sbjct: 143 YLASKKFVHRDLAARNCMLDEKFTVKVADFGLA 175

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY---AMKAMEKSVML-NRNKVHRACIEREIMSLLDHP 366
            + LG G  G V+              A+K  +K   L N+ K      E  IM  LDHP
Sbjct: 17  NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMS---EAVIMKNLDHP 73

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  L           +I +  P GEL   L++    +       + + ++   + YL  
Sbjct: 74  HIVKLIGII-EEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLY-SLQICKAMAYLES 131

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  ++RD+   NIL+     V L DF LS
Sbjct: 132 INCVHRDIAVRNILVASPECVKLGDFGLS 160

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 6/150 (4%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
                +K LG G  G V   + +G  ++ A+K +++  M + ++      E ++M  L H
Sbjct: 24  KDLTFLKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSM-SEDEFIE---EAKVMMNLSH 78

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             L  LY        I +IT++   G L   L +   +   +        +V   +EYL 
Sbjct: 79  EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEM-CKDVCEAMEYLE 137

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               ++RDL   N L+   G V ++DF LS
Sbjct: 138 SKQFLHRDLAARNCLVNDQGVVKVSDFGLS 167

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR-ACIERE 358
           GEK     ++    +G G  G V     +   E  A+K     ++ N+      A IE  
Sbjct: 49  GEKWM-DRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIK-----IIKNKKAFLNQAQIEVR 102

Query: 359 IMSLL------DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF 412
           ++ L+         ++  L   F    H+CL+ +      L+ LL     +    +  R 
Sbjct: 103 LLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEML-SYNLYDLLRNTNFRGVSLNLTRK 161

Query: 413 YAAEVVIGLEYLHC--LGIIYRDLKPENILLQKDGH--VVLTDF 452
           +A ++   L +L    L II+ DLKPENILL       + + DF
Sbjct: 162 FAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDF 205

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 15/151 (9%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHR-ACIEREIMSLL------ 363
           +K +G G  G V         +  A+K     ++ N  + HR A  E  I+  L      
Sbjct: 102 LKVIGKGSFGQVVKAYDHKVHQHVALK-----MVRNEKRFHRQAAEEIRILEHLRKQDKD 156

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +   +  +  +F    HIC+  +      L+ L+ K   + F     R +A  ++  L+ 
Sbjct: 157 NTMNVIHMLENFTFRNHICMTFELL-SMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDA 215

Query: 424 LHCLGIIYRDLKPENILLQKDGHVV--LTDF 452
           LH   II+ DLKPENILL++ G     + DF
Sbjct: 216 LHKNRIIHCDLKPENILLKQQGRSGIKVIDF 246

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LD 364
            ++    +G G  G V     +    + A+K   K + +  + +    I REI  L  L+
Sbjct: 54  RYEIRHLIGTGSYGHVCEAYDKLEKRVVAIK---KILRVFEDLIDCKRILREIAILNRLN 110

Query: 365 HP--------FLPTLYASFQTSTHICLITDFCPGGELFALLDK-QPMKIFREDSARFYAA 415
           H          +P     F     + ++ +     +   L      +    E   +    
Sbjct: 111 HDHVVKVLDIVIPKDVEKFD---ELYVVLEIA-DSDFKKLFRTPVYLT---ELHIKTLLY 163

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++G++Y+H  GI++RDLKP N L+ +D  V + DF L+
Sbjct: 164 NLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLA 203

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 20/152 (13%)

Query: 311 IKPLGCGDTGSVHLVE---LQGAGELYAMKAMEKSVMLNRNKVHR-ACIEREIMSLL--- 363
           +  LG G  G V  VE    +  G   A+K     ++ N ++    A  E +++  L   
Sbjct: 19  VDTLGEGAFGKV--VECIDHKAGGRHVAVK-----IVKNVDRYCEAARSEIQVLEHLNTT 71

Query: 364 ----DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
                   +  +   F+   HIC++ +   G   +  + +     FR D  R  A ++  
Sbjct: 72  DPNSTFRCV-QMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICK 129

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTD 451
            + +LH   + + DLKPENIL  +  +    +
Sbjct: 130 SVNFLHSNKLTHTDLKPENILFVQSDYTEAYN 161

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 26/166 (15%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LD 364
            +  +KPLGCG  G V         +  A+K   K V+   +        REI  +  LD
Sbjct: 12  RYMDLKPLGCGGNGLVFSAVDNDCDKRVAIK---KIVL--TDPQSVKHALREIKIIRRLD 66

Query: 365 HP--------FLP------TLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSA 410
           H           P          S      + ++ ++    +L  +L++ P+    E+ A
Sbjct: 67  HDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYM-ETDLANVLEQGPLL---EEHA 122

Query: 411 RFYAAEVVIGLEYLHCLGIIYRDLKPENILL-QKDGHVVLTDFDLS 455
           R +  +++ GL+Y+H   +++RDLKP N+ +  +D  + + DF L+
Sbjct: 123 RLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLA 168

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 15/153 (9%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV---MLNRNKVHRACI----EREIMSLL 363
            + +G G  G V+       G L      +       LNR            E  IM   
Sbjct: 94  NEVIGRGHFGCVYH------GTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF 147

Query: 364 DHPFLPTLYA-SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
            HP + +L     ++     ++  +   G+L   +  +      +D   F   +V  G++
Sbjct: 148 SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF-GLQVAKGMK 206

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +L     ++RDL   N +L +   V + DF L+
Sbjct: 207 FLASKKFVHRDLAARNCMLDEKFTVKVADFGLA 239

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 21/169 (12%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSV--------MLNRNKVHRA 353
            +K   P+G G  G ++L ++      G+     +K                 R      
Sbjct: 36  AWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQ 95

Query: 354 CIEREIMSLLDHPFLPTLYAS----FQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
             +      L +  +P  + S        ++  +I D   G +L  + +    + F   +
Sbjct: 96  IQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKR-FSRKT 153

Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILL-QKDGHVV-LTDFDLSF 456
               +  ++  LEY+H    ++ D+K  N+LL  K+   V L D+ L++
Sbjct: 154 VLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAY 202

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 19/160 (11%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY-------AMKAMEKSVMLNRNKVHRACIEREIMSLL 363
            + LG G    +     +  G+          +K ++K+                +MS L
Sbjct: 13  NESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFE---AASMMSKL 69

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            H  L   Y          L+ +F   G L   L K    I         A ++   + +
Sbjct: 70  SHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEV-AKQLAAAMHF 128

Query: 424 LHCLGIIYRDLKPENILLQK-------DGHVV-LTDFDLS 455
           L    +I+ ++  +NILL +       +   + L+D  +S
Sbjct: 129 LEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS 168

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 23/167 (13%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LD 364
            ++ +KP+G G  G V            A+K   K     +N+ H     RE++ +  ++
Sbjct: 26  RYQNLKPIGSGAQGIVCAAYDAILERNVAIK---KLSRPFQNQTHAKRAYRELVLMKCVN 82

Query: 365 HPFLPTLY------ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           H  +  L        S +    + ++ +      L  ++ +  +     +   +   +++
Sbjct: 83  HKNIIGLLNVFTPQKSLEEFQDVYIVMELM-DANLCQVI-QMELD---HERMSYLLYQML 137

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-------FMT 458
            G+++LH  GII+RDLKP NI+++ D  + + DF L+        MT
Sbjct: 138 CGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT 184

>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} Length = 120

 Score = 49.8 bits (120), Expect = 8e-08
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 45/154 (29%)

Query: 69  LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEI 128
              T+E       ITD       I++A+ +F  +T Y  EE+LG+N S L          
Sbjct: 7   FRQTVEHAPIAISITDL---KANILYANRAFRTITGYGSEEVLGKNESILS--------- 54

Query: 129 LGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLI 188
                +  T  L + ALW                ++  +               +    +
Sbjct: 55  -----NGTTPRLVYQALWG--------------RLAQKK----------PWSGVL----V 81

Query: 189 NYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD 222
           N  K    +     + P+ +  GE  Y++G+  D
Sbjct: 82  NRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRD 115

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 54/200 (27%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            +   K LG G  G V  V    +G+ +A+K   K V+ +    +R   E +IM +LDH 
Sbjct: 8   KYSLGKTLGTGSFGIVCEVFDIESGKRFALK---K-VLQDPRYKNR---ELDIMKVLDHV 60

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI------- 419
            +  L   F T+          P            +    +      +    +       
Sbjct: 61  NIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYV 120

Query: 420 --------------------------------GLEYLHCLGIIYRDLKPENILL-QKDGH 446
                                            + ++H LGI +RD+KP+N+L+  KD  
Sbjct: 121 PDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNT 180

Query: 447 VVLTDFDLS-------FMTS 459
           + L DF  +          +
Sbjct: 181 LKLCDFGSAKKLIPSEPSVA 200

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY---AMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
            + +G G  G VH              A+K  +     +  +      E   M   DHP 
Sbjct: 395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQ--EALTMRQFDHPH 452

Query: 368 LPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL 427
           +  L     T   + +I + C  GEL + L  +   +        YA ++   L YL   
Sbjct: 453 IVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKFSLDLASLIL-YAYQLSTALAYLESK 510

Query: 428 GIIYRDLKPENILLQKDGHVVLTDFDLS 455
             ++RD+   N+L+  +  V L DF LS
Sbjct: 511 RFVHRDIAARNVLVSSNDCVKLGDFGLS 538

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LD 364
           ++     +G G  G V+L   +   +  A+K + +   +  + +    I REI  L  L 
Sbjct: 27  NYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNR---MFEDLIDCKRILREITILNRLK 83

Query: 365 HP--------FLPTLYASFQTSTHICLITDFCPGGELFALL-DKQPMKIFREDSARFYAA 415
                      +P     F     + ++ +     +L  L      +    E+  +    
Sbjct: 84  SDYIIRLYDLIIPDDLLKFD---ELYIVLEIA-DSDLKKLFKTPIFLT---EEHIKTILY 136

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +++G  ++H  GII+RDLKP N LL +D  V + DF L+
Sbjct: 137 NLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLA 176

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 20/152 (13%)

Query: 311 IKPLGCGDTGSVHLVE---LQGAGELYAMKAMEKSVMLNRNKVHR-ACIEREIMSLL--- 363
           +  LG G  G V  VE           A+K     ++ N  K    A +E  ++  +   
Sbjct: 24  VGNLGEGTFGKV--VECLDHARGKSQVALK-----IIRNVGKYREAARLEINVLKKIKEK 76

Query: 364 ----DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
                   +  +   F    H+C+  +   G   F  L +   + +     R  A ++  
Sbjct: 77  DKENKFLCV-LMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCH 134

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTD 451
            L +LH   + + DLKPENIL        L +
Sbjct: 135 ALRFLHENQLTHTDLKPENILFVNSEFETLYN 166

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 16/159 (10%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY---AMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
            + LG G+ GSV   +L+     +   A+K ++  ++ + +       E   M   DHP 
Sbjct: 28  GRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLR-EAACMKEFDHPH 86

Query: 368 LPTLYA------SFQTSTHICLITDFCPGGELFALL-----DKQPMKIFREDSARFYAAE 416
           +  L        +        +I  F   G+L A L      + P  +  +   RF   +
Sbjct: 87  VAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRF-MVD 145

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  G+EYL     I+RDL   N +L +D  V + DF LS
Sbjct: 146 IACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLS 184

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 15/153 (9%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY---AMKAMEKSVMLNRNKVHRACI----EREIMSLL 363
            + +G G  G V+  E     +     A+K       L+R    +       E  +M  L
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQCAIK------SLSRITEMQQVEAFLREGLLMRGL 79

Query: 364 DHPFLPTLYA-SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           +HP +  L            ++  +   G+L   +         +D   F   +V  G+E
Sbjct: 80  NHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISF-GLQVARGME 138

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           YL     ++RDL   N +L +   V + DF L+
Sbjct: 139 YLAEQKFVHRDLAARNCMLDESFTVKVADFGLA 171

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 20/167 (11%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAM-----EKSVMLNRNKV-HRACIEREI- 359
            +   K +G G  G ++L       E  A   +     E   + +  K   R   +  I 
Sbjct: 38  QWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIK 97

Query: 360 ----MSLLDHPFLPTLYAS----FQTSTHICLITDFCPGGELFALLDKQPMKIFREDSAR 411
                  LD+  +P  Y S    F+  ++  ++ +   G +L  +  +     F++ +  
Sbjct: 98  KWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQN--GTFKKSTVL 154

Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILL-QKDGHVV-LTDFDLSF 456
                ++  LEY+H    ++ D+K  N+LL  K+   V L D+ LS+
Sbjct: 155 QLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSY 201

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 19/137 (13%)

Query: 331 GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH--ICLITDFC 388
            + YA+K +E + +        AC E  ++  L HP + +L   F +     + L+ D+ 
Sbjct: 48  DKDYALKQIEGTGIS-----MSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYA 102

Query: 389 PGGELFALLDKQPMKIFREDSARFYAAEV-------VIGLEYLHCLGIIYRDLKPENILL 441
              +L+ ++         +   +     V       + G+ YLH   +++RDLKP NIL+
Sbjct: 103 EH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILV 161

Query: 442 QKD----GHVVLTDFDL 454
             +    G V + D   
Sbjct: 162 MGEGPERGRVKIADMGF 178

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM---SLL 363
            ++ +K LG G  G V     +  GE+ A+K   K     +N        REIM    L 
Sbjct: 10  KYELVKKLGKGAYGIVWKSIDRRTGEVVAVK---KIFDAFQNSTDAQRTFREIMILTELS 66

Query: 364 DHPFLPTLYASFQTST--HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            H  +  L    +      + L+ D+    +L A++    ++       ++   +++  +
Sbjct: 67  GHENIVNLLNVLRADNDRDVYLVFDYM-ETDLHAVIRANILE---PVHKQYVVYQLIKVI 122

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +YLH  G+++RD+KP NILL  + HV + DF LS
Sbjct: 123 KYLHSGGLLHRDMKPSNILLNAECHVKVADFGLS 156

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 23/162 (14%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV-----MLNRNKVHRACI----EREIMS 361
            + LG G  G V+       G    +   E         +N     R  I    E  +M 
Sbjct: 30  SRELGQGSFGMVYE------GVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMK 83

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARF-------Y 413
             +   +  L           +I +    G+L + L   +P        A          
Sbjct: 84  EFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 143

Query: 414 AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           A E+  G+ YL+    ++RDL   N ++ +D  V + DF ++
Sbjct: 144 AGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMT 185

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 23/161 (14%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            F+  +  G G  G+V L + +  G   A+K   K V+ +    +R     + +++L HP
Sbjct: 24  RFQVERMAGQGTFGTVQLGKEKSTGMSVAIK---K-VIQDPRFRNRELQIMQDLAVLHHP 79

Query: 367 FLPTLYASFQTSTH-------ICLITDFCPGGELFALLD-----KQPMKIFREDSARFYA 414
            +  L + F T          + ++ ++ P   L          +           + + 
Sbjct: 80  NIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPP---ILIKVFL 135

Query: 415 AEVVIGLEYLHC--LGIIYRDLKPENILL-QKDGHVVLTDF 452
            +++  +  LH   + + +RD+KP N+L+ + DG + L DF
Sbjct: 136 FQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDF 176

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 23/164 (14%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY-----AMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
              LG G  G V L E             A+KA++++    R    R   E E++++L H
Sbjct: 46  KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQR---EAELLTMLQH 102

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALL--------------DKQPMKIFREDSAR 411
             +   +        + ++ ++   G+L   L              D  P  +       
Sbjct: 103 QHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLA 162

Query: 412 FYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             A++V  G+ YL  L  ++RDL   N L+ +   V + DF +S
Sbjct: 163 V-ASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMS 205

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 29/168 (17%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV-----MLNRNKVHRACI----EREIMS 361
           ++ LG    G V+       G L+     E++       L              E  + +
Sbjct: 14  MEELGEDRFGKVYK------GHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRA 67

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL-------DKQPMKIFREDSARF-- 412
            L HP +  L         + +I  +C  G+L   L       D       R   +    
Sbjct: 68  RLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEP 127

Query: 413 -----YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                  A++  G+EYL    ++++DL   N+L+    +V ++D  L 
Sbjct: 128 PDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLF 175

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY-----AMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
            + LG G  G V L E             A+KA++   +  R    R   E E+++ L H
Sbjct: 20  KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQR---EAELLTNLQH 76

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALL-------DKQPMKIFREDSARFY----- 413
             +   Y        + ++ ++   G+L   L               R+           
Sbjct: 77  EHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQML 136

Query: 414 --AAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             A+++  G+ YL     ++RDL   N L+  +  V + DF +S
Sbjct: 137 HIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMS 180

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 356 EREIMSLLD-HPFLPTLY-ASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARF 412
           E +I+  +  H  +  L  A  +    + +I +FC  G L   L  K+   +  + +   
Sbjct: 80  ELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 139

Query: 413 -------------YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                        Y+ +V  G+E+L     I+RDL   NILL +   V + DF L+
Sbjct: 140 LYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA 195

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY---AMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
            K LG G+ GSV    L+         A+K M K    ++ ++     E   M    HP 
Sbjct: 39  GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTM-KLDNSSQREIEEFLSEAACMKDFSHPN 97

Query: 368 LPTLYA-----SFQTSTHICLITDFCPGGELFALL-----DKQPMKIFREDSARFYAAEV 417
           +  L       S Q      +I  F   G+L   L     +  P  I  +   +F   ++
Sbjct: 98  VIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKF-MVDI 156

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +G+EYL     ++RDL   N +L+ D  V + DF LS
Sbjct: 157 ALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLS 194

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 22/122 (18%)

Query: 356 EREIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARF-- 412
           E  ++  ++HP +  LY +      + LI ++   G L   L + + +      S     
Sbjct: 76  EFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRN 135

Query: 413 -------------------YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFD 453
                              +A ++  G++YL  + +++RDL   NIL+ +   + ++DF 
Sbjct: 136 SSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFG 195

Query: 454 LS 455
           LS
Sbjct: 196 LS 197

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 25/163 (15%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV-----MLNRNKVHRACI----EREIMS 361
           I+ LG G  G V+       G++  M      +      L      +  +    E  I+S
Sbjct: 35  IRGLGHGAFGEVYE------GQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIIS 88

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL------DKQPMKIFREDSARFYAA 415
             +H  +         S    ++ +   GG+L + L        QP  +   D     A 
Sbjct: 89  KFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHV-AR 147

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILL--QKDGHVV-LTDFDLS 455
           ++  G +YL     I+RD+   N LL     G V  + DF ++
Sbjct: 148 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMA 190

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 25/163 (15%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV-----MLNRNKVHRACI----EREIMS 361
           I+ LG G  G V+       G++  M      +      L      +  +    E  I+S
Sbjct: 76  IRGLGHGAFGEVYE------GQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIIS 129

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL------DKQPMKIFREDSARFYAA 415
             +H  +         S    ++ +   GG+L + L        QP  +   D     A 
Sbjct: 130 KFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHV-AR 188

Query: 416 EVVIGLEYLHCLGIIYRDLKPENILL--QKDGHVV-LTDFDLS 455
           ++  G +YL     I+RD+   N LL     G V  + DF ++
Sbjct: 189 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMA 231

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 17/117 (14%)

Query: 356 EREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPGGELFALL---------DKQPMKIF 405
           E +++S L +H  +  L  +        +IT++C  G+L   L          K    I 
Sbjct: 76  ELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIM 135

Query: 406 REDSARF-------YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +D           ++ +V  G+ +L     I+RDL   NILL       + DF L+
Sbjct: 136 EDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLA 192

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 22/166 (13%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV-MLNRNKVHRACI----EREIMSLL-D 364
            KPLG G  G V L E  G  +    +  + +V ML  +   +       E E+M ++  
Sbjct: 74  GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGK 133

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGEL---------------FALLDKQPMKIFREDS 409
           H  +  L  +      + +I ++   G L               +        ++  +D 
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 193

Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
               A +V  G+EYL     I+RDL   N+L+ +D  + + DF L+
Sbjct: 194 VSC-AYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA 238

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 39/177 (22%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV-----MLNRNKVHRACI----EREIMS 361
           ++ +G G  G V             +   E        ML              E  +M+
Sbjct: 52  VRDIGEGAFGRVFQ------ARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMA 105

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGEL--FALLDKQPMKIFREDSARF------- 412
             D+P +  L         +CL+ ++   G+L  F L    P  +     +         
Sbjct: 106 EFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEF-LRSMSPHTVCSLSHSDLSTRARVS 164

Query: 413 --------------YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                          A +V  G+ YL     ++RDL   N L+ ++  V + DF LS
Sbjct: 165 SPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLS 221

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 20/165 (12%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSV-MLNRNKVHRACI----EREIMSLL-D 364
            KPLG G  G V + E  G  +    +A+  +V ML  +   +       E E+M ++  
Sbjct: 40  GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARF----------- 412
           H  +  L  +      + +I ++   G L   L  ++P  +                   
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159

Query: 413 --YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                ++  G+EYL     I+RDL   N+L+ ++  + + DF L+
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA 204

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 15/114 (13%)

Query: 356 EREIMSLLD-HPFLPTLYASFQTSTHICLITDFCPGGEL--FALLDKQPMKIFREDSARF 412
           E +IMS L  H  +  L  +      + +IT++C  G+L  F L  K  +       A  
Sbjct: 99  ELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNF-LRRKSRVLETDPAFAIA 157

Query: 413 -----------YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                      ++++V  G+ +L     I+RD+   N+LL       + DF L+
Sbjct: 158 NSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLA 211

>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A Length = 120

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 18/136 (13%), Positives = 30/136 (22%), Gaps = 42/136 (30%)

Query: 87  IPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALW 146
             D  I   +D    +    R +++GR+   L  +    E I  R               
Sbjct: 19  SRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGER--------------- 63

Query: 147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPM 206
                                     I   +          I     G+ FW     + +
Sbjct: 64  --------------------------ISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL 97

Query: 207 RDHKGELQYFIGVQLD 222
            D    L   +    D
Sbjct: 98  -DRTAPLAAGVWTFED 112

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 15/115 (13%)

Query: 356 EREIMSLL-DHPFLPTLYASFQTSTHICLITDFCPGGELFA-LLDKQPMKIFREDSARF- 412
           E E+M ++  H  +  L  +      + +I ++   G L   L  ++P  +         
Sbjct: 136 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 195

Query: 413 ------------YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
                          ++  G+EYL     I+RDL   N+L+ ++  + + DF L+
Sbjct: 196 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA 250

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELY--AMKAMEKSVMLN-RNKVHRACIEREIMS-LLDHP 366
              +G G+ G V    ++  G     A+K M++    +          E E++  L  HP
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAG---ELEVLCKLGHHP 86

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARF-------------- 412
            +  L  + +   ++ L  ++ P G L   L K  +       A                
Sbjct: 87  NIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLH 146

Query: 413 YAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +AA+V  G++YL     I+RDL   NIL+ ++    + DF LS
Sbjct: 147 FAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS 189

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 71/410 (17%), Positives = 124/410 (30%), Gaps = 126/410 (30%)

Query: 52  DSWDRAERER-DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLE-LTEYTREE 109
           +  +       ++   I L TT     +   +TD          + D     LT    + 
Sbjct: 252 NVQNAKAWNAFNLSCKI-LLTT-----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 110 ILGR--NCSFLELTEYTREEILGRN---CSTYTFMLY-FLALWKKNYGVYNF-TLGCCLE 162
           +L +  +C   +L      E+L  N    S     +   LA W  N+   N   L   +E
Sbjct: 306 LLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIE 360

Query: 163 ISSDQATVSKIRD-----AV-REQREITVQLINYTKSGKKFW------------NLFHLQ 204
            S +    ++ R      +V      I   L+         W            N  H  
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL------SLIWFDVIKSDVMVVVNKLHKY 414

Query: 205 PM--RDHKGELQYFI-GVQLDGSDHVEPLRNRLSEKTEQQSA---KIVKATAENVNEAVR 258
            +  +  K E    I  + L+           L  K E + A    IV    ++ N   +
Sbjct: 415 SLVEKQPK-ESTISIPSIYLE-----------LKVKLENEYALHRSIV----DHYN-IPK 457

Query: 259 ELPDANLRPEDL---WAIH------------SQPVFPRPHKRDNSSWIAIQKITGSGEKI 303
                +L P  L   +  H               +F       +  ++  QKI       
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLE-QKIRHDS--- 511

Query: 304 GLHHFKPIKPLGCGDTGSVH--LVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
                          +GS+   L +L    + Y     +  +  N  K      ER + +
Sbjct: 512 ----------TAWNASGSILNTLQQL----KFY-----KPYICDNDPK-----YERLVNA 547

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSAR 411
           +LD  FLP +  +   S +  L+          AL+ +    IF E++ +
Sbjct: 548 ILD--FLPKIEENLICSKYTDLLR--------IALMAEDE-AIF-EEAHK 585

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH-CLGIIYR 432
            F     + ++ +F  GG     L++   K+    +A+    ++   L      L   +R
Sbjct: 130 DFFKDDQLFIVLEFEFGGID---LEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHR 186

Query: 433 DLKPENILLQKDGHVVLTDFDLS 455
           DL   N+LL+K     L      
Sbjct: 187 DLHWGNVLLKKTSLKKLHYTLNG 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	489
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.98
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.98
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.98
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.98
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.98
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.98
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.97
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.97
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.97
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.97
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.97
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.97
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.97
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.97
3uqc_A	286	Probable conserved transmembrane protein; structur	99.97
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.97
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.97
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.97
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.97
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.97
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.97
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.97
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.97
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.97
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.97
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.97
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.97
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.97
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.97
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.97
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.97
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.97
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.97
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.97
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.97
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.97
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.97
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.97
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.97
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.97
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.97
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.97
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.97
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.97
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.97
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.97
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.97
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.97
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
3niz_A	311	Rhodanese family protein; structural genomics, str	99.97
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.97
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.97
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.97
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.97
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.96
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.96
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.96
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.96
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.96
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.96
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.96
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.96
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.96
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.96
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.96
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.96
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.96
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.96
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.96
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.96
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.96
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.96
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.96
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.96
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.96
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.96
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.96
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.96
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.96
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.96
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.96
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.96
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.96
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.96
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.96
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.96
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.96
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.96
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.96
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.96
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.96
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.96
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.96
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.96
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.96
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.96
3bhy_A	283	Death-associated protein kinase 3; death associate	99.96
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.96
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.96
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.96
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.96
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.96
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.96
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.96
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.96
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.96
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.96
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.96
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.96
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.96
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.96
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.96
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.96
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.96
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.96
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.96
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.96
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.96
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.96
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.96
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.96
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.96
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.96
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.96
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.96
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.96
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.96
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.96
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.96
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.96
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.96
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.96
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.96
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.96
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.96
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.96
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.96
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.96
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.96
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.96
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.96
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.96
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.96
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.96
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.96
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.96
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.96
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.96
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.96
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.96
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.96
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.96
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.96
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.96
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.96
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.96
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.96
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.96
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.96
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.96
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.96
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.96
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.96
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.96
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.96
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.96
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.96
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.96
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.96
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.96
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.96
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.95
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.95
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.95
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.95
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.95
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.95
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.95
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.95
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.95
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.95
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.95
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.95
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.95
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.95
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.95
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.95
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.95
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.95
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.95
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.95
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.95
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.95
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.95
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.95
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.95
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.95
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.95
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.95
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.95
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.95
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.95
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.95
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.95
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.95
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.95
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.95
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.95
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.94
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.94
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.94
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.94
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.94
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.94
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.93
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.93
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.92
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.88
1n9l_A	109	PHOT-LOV1, putative blue light receptor; phototrop	99.88
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.88
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.82
2gj3_A	120	Nitrogen fixation regulatory protein; PAS domain,	99.82
2pr5_A	132	Blue-light photoreceptor; light-oxygen-voltage, LO	99.79
3ewk_A	227	Sensor protein; PAS domain, alpha/beta fold, kinas	99.78
4hia_A	176	LOV protein; PAS, HTH, signaling protein; HET: FMN	99.77
4eet_B	115	Phototropin-2; LOV, blue light photoreceptor, sign	99.72
3ue6_A	166	Aureochrome1; PAS/LOV domain, FMN-binding blue-lig	99.72
3p7n_A	258	Sensor histidine kinase; LOV domain, light-activat	99.71
3t50_A	128	Blue-light-activated histidine kinase; PAS superfa	99.71
3ewk_A	227	Sensor protein; PAS domain, alpha/beta fold, kinas	99.68
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.67
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.67
3f1p_A	117	Endothelial PAS domain-containing protein 1; PAS d	99.64
3f1p_B	121	ARYL hydrocarbon receptor nuclear translocator; PA	99.64
3mqq_A	120	Transcriptional regulator, LUXR family; PAS domain	99.63
2z6d_A	130	Phototropin-2; PAS-fold, LOV-fold, alternative spl	99.61
2vv6_A	119	FIXL, sensor protein FIXL; signaling protein, tran	99.61
2r78_A	117	Sensor protein; sensory box sensor histidine kinas	99.61
2v0u_A	146	NPH1-1, LOV2; kinase, transferase, ATP-binding, se	99.6
1d06_A	130	Nitrogen fixation regulatory protein FIXL; oxygen	99.59
3lyx_A	124	Sensory BOX/ggdef domain protein; structural genom	99.59
1byw_A	110	Protein (human ERG potassium channel); PAS domain,	99.58
3sw1_A	162	Sensory box protein; light-oxygen-voltage, LOV, PA	99.57
4eho_A	635	Bacteriophytochrome, PAS/PAC sensor; photoreceptor	99.55
3d72_A	149	Vivid PAS protein VVD; circadian, photoreceptor, b	99.53
3mxq_A	152	Sensor protein; PSI2, MCSG, structural genomics, p	99.52
2l0w_A	138	Potassium voltage-gated channel, subfamily H (EAG	99.52
2kdk_A	121	ARYL hydrocarbon receptor nuclear translocator-LI	99.48
3luq_A	114	Sensor protein; PAS, histidine, kinase, PSI, MCSG,	99.48
3nja_A	125	Probable ggdef family protein; structural genomics	99.48
3k3c_A	158	Protein RV1364C/MT1410; sensor, PAS, signal transd	99.47
3olo_A	118	Two-component sensor histidine kinase; structural	99.47
3bwl_A	126	Sensor protein; structural genomics, APC87707.1, P	99.46
3h9w_A	115	Diguanylate cyclase with PAS/PAC sensor; alpha-bet	99.45
3mr0_A	142	Sensory box histidine kinase/response regulator; P	99.45
3kx0_X	185	Uncharacterized protein RV1364C/MT1410; PAS domain	99.41
3eeh_A	125	Putative light and redox sensing histidine kinase;	99.4
3mjq_A	126	Uncharacterized protein; NESG, structural genomics	99.39
3vol_A	233	Aerotaxis transducer AER2; heme, oxygen sensor pro	99.37
3icy_A	118	Sensor protein; sensory box histidine kinase/respo	99.36
3mfx_A	129	Sensory BOX/ggdef family protein; alpha-beta prote	99.34
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.34
4hi4_A	121	Aerotaxis transducer AER2; PAS domain, diatomic GA	99.33
1v9y_A	167	Heme PAS sensor protein; signaling protein; HET: H	99.31
2qkp_A	151	Uncharacterized protein; structural genomics, unkn	99.22
3b33_A	115	Sensor protein; structural genomics, PAS domain, n	99.19
1ll8_A	114	PAS kinase; PAS domain, ligand binding, ligand scr	99.18
3fc7_A	125	HTR-like protein, sensor protein; APC87712.1, HTR-	99.17
3fg8_A	118	Uncharacterized protein RHA05790; PAS domain, stru	99.17
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.15
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.14
2vlg_A	111	Sporulation kinase A; histidine kinase, two-compon	99.14
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.08
3a0s_A	96	Sensor protein; PAS-fold, kinase, phosphoprotein,	99.06
3a0r_A	349	Sensor protein; four helix bundle, PAS fold, kinas	99.03
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.99
3cax_A	369	Uncharacterized protein PF0695; structural genomic	98.97
2w0n_A	118	Sensor protein DCUS; signal transduction, two-comp	98.93
1nwz_A	125	PYP, photoactive yellow protein; PAS, LOV, GAF, do	98.87
1mzu_A	129	PPR; photoactive yellow protein, PAS, PYP, signali	98.82
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	98.75
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.71
3rty_A	339	Period circadian protein; PAS domain, signalling,	98.65
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.56
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.52
4dj3_A	317	Period circadian protein homolog 3; PAS domain, ci	98.51
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.46
3gdi_A	309	Period circadian protein homolog 2; tandem PAS dom	98.29
4dj2_A	320	Period circadian protein homolog 1; PAS domains, c	98.26
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.25
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.1
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.0
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.98
2ykf_A	305	Pdtas, probable sensor histidine kinase pdtas; tra	97.17
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.9
3rty_A	339	Period circadian protein; PAS domain, signalling,	97.75
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.55
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.5
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.41
4f3l_A	361	Mclock, circadian locomoter output cycles protein	97.29
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.06
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.03
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	96.95
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.86
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.74
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.69
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.64
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.63
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.43
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	96.35
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.81
1oj5_A	132	Steroid receptor coactivator 1A; transcriptional c	95.12
3mes_A	424	Choline kinase; malaria, structural genomics, stru	94.65
2ool_A	337	Sensor protein; bacteriophytochrome, photoconversi	93.06
4dj2_A	320	Period circadian protein homolog 1; PAS domains, c	92.72
3gdi_A	309	Period circadian protein homolog 2; tandem PAS dom	92.46
4dj3_A	317	Period circadian protein homolog 3; PAS domain, ci	91.3

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=6.8e-48  Score=422.77  Aligned_cols=351  Identities=25%  Similarity=0.367  Sum_probs=235.1

Q ss_pred             CCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCcccccCCCHHH
Q 042772           90 NPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQAT  169 (489)
Q Consensus        90 ~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (489)
                      -.-|+||.+|++.++|++++..||++++|++|+                                            ...
T Consensus         4 l~~i~a~~~~l~a~~~~~~~~~~~~~~~~~~p~--------------------------------------------~~~   39 (689)
T 3v5w_A            4 LEAVLADVSYLMAMEKSKATPAARASKKILLPE--------------------------------------------PSI   39 (689)
T ss_dssp             --------------------------CCCCCCC--------------------------------------------TTH
T ss_pred             cchhHhhHHHHHHhccCCCCcchhhhhhhhCCC--------------------------------------------chH
Confidence            346889999999999999999999999999885                                            235


Q ss_pred             HHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccccccccccchhhhhHHHHHHHHh
Q 042772          170 VSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKIVKAT  249 (489)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~e~~~l~~~~e~qsa~ivkat  249 (489)
                      ++.|+.++......+++.+++.+-|+.+|.+|..+++.+..+.+.+|.+++.  -|..+..+++...........+.+..
T Consensus        40 ~~~~~~~~~~~~~~~~~~i~~q~ig~~~f~~f~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~r~~~~~~i~~~~~~~~~  117 (689)
T 3v5w_A           40 RSVMQKYLEDRGEVTFEKIFSQKLGYLLFRDFCLNHLEEARPLVEFYEEIKK--YEKLETEEERVARSREIFDSYIMKEL  117 (689)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHTSHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH--HHTCCSHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHhhccccccceecCccHHHHHHHHHhcCcchhhhHHHHHHHHHHh--hhccCchhhHHHHHHHHHHHhcchhh
Confidence            6669999999999999999999999999999999999999998888876642  01112222222222121111222211


Q ss_pred             -------hhhhhHHhhccCCCCCCccchhhccC--------CCCCCCCCCCCCchhHHHHhhcCCCccccccCccccccc
Q 042772          250 -------AENVNEAVRELPDANLRPEDLWAIHS--------QPVFPRPHKRDNSSWIAIQKITGSGEKIGLHHFKPIKPL  314 (489)
Q Consensus       250 -------~e~vdeavreLp~a~~~p~~l~a~~s--------~~~~p~p~~~~~~s~~~~~~~~~~~~~i~~~~y~~~~~L  314 (489)
                             .....+.+++.+.++..+.+++....        +.++..........+....+.......+.+++|++++.|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~l~~~~f~~~~~s~~~~r~~q~k~~e~~~~~slddf~i~k~L  197 (689)
T 3v5w_A          118 LACSHPFSKSATEHVQGHLGKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQWKNVELNIHLTMNDFSVHRII  197 (689)
T ss_dssp             HSSSSCCCHHHHHHHHHHHHTTCCCTTTTHHHHHHHHHHHTTHHHHHHHHSHHHHHHHHHHHHHTTCCCCGGGEEEEEEE
T ss_pred             hhccCccchHHHHHHHHhhhhccCChHHHHHHHHHHHHHhccCcccccccChhHHHHHhccccccCCCCchHHeEEEEEE
Confidence                   22333444444333333444443322        222221111111112222233334456778999999999


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHH---HHHHHhCCCCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          315 GCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIE---REIMSLLDHPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       315 G~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E---~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      |+|+||+||+|.++.+|+.||||++++...........+..|   +.+++.++|||||+++++|++...+|+|||||+||
T Consensus       198 G~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~GG  277 (689)
T 3v5w_A          198 GRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGG  277 (689)
T ss_dssp             EECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             ecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEEecCCCC
Confidence            999999999999999999999999987655433333444444   55666779999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----------
Q 042772          392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----------  460 (489)
Q Consensus       392 sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----------  460 (489)
                      +|.++|.+.  +.+++..+++++.||+.||.|||++|||||||||+||||+.+|++||+|||+|+....           
T Consensus       278 dL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~  355 (689)
T 3v5w_A          278 DLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHG  355 (689)
T ss_dssp             BHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGG
T ss_pred             cHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCCCCCCccCCcC
Confidence            999999876  4599999999999999999999999999999999999999999999999999964321           


Q ss_pred             --CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 --KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                        +|+.       -..+|+|++|+++|||++|..||.
T Consensus       356 YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~  392 (689)
T 3v5w_A          356 YMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFR  392 (689)
T ss_dssp             GCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence              1221       233488999999999999999994

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1e-40  Score=336.99  Aligned_cols=182  Identities=38%  Similarity=0.554  Sum_probs=163.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||+||+|.++.+|+.||+|++++.........+.+.+|+++|+.++|||||+++++|++++.+|+|
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            46799999999999999999999999999999999887655556678899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      ||||+||+|.+++.+.  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|+....    
T Consensus       111 mEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~  188 (311)
T 4aw0_A          111 LSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ  188 (311)
T ss_dssp             ECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTC
T ss_pred             EecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCc
Confidence            9999999999999875  3499999999999999999999999999999999999999999999999999975421    


Q ss_pred             -------C-Cce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------K-PQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------~-~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             . +.+           -..+|+|++|+++++|++|..||.
T Consensus       189 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~  235 (311)
T 4aw0_A          189 ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR  235 (311)
T ss_dssp             CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                   1 111           123488999999999999999995

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=5e-40  Score=337.00  Aligned_cols=184  Identities=24%  Similarity=0.444  Sum_probs=159.0

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      .+++|++++.||+|+||+||+|.++.+|+.||||++++... .....+.+.+|+.+++.++|||||+++++|.+++.+||
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yi  100 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRM-SSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYI  100 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHC-CHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEE
Confidence            35789999999999999999999999999999999987654 34457789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC----
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS----  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~----  459 (489)
                      |||||+||+|.++|..+....+++..++.++.||+.||.|||++||+||||||+||||+.+|.+||+|||+|+...    
T Consensus       101 VmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~  180 (350)
T 4b9d_A          101 VMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE  180 (350)
T ss_dssp             EEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH
T ss_pred             EEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcc
Confidence            9999999999999987766668999999999999999999999999999999999999999999999999997433    


Q ss_pred             ------C-----CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          460 ------C-----KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------~-----~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            .     +|      .+-..+|+|++|++++||++|..||.
T Consensus       181 ~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~  226 (350)
T 4b9d_A          181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFE  226 (350)
T ss_dssp             HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                  1     11      12234599999999999999999995

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=4.3e-39  Score=320.03  Aligned_cols=181  Identities=29%  Similarity=0.464  Sum_probs=152.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++++.||+|+||+||+|.++.+|+.||+|++++...........+.+|+.+++.++||||++++++|.+++.+|+|
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            35899999999999999999999999999999999887665556677899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||| +|+|.+++.++  +.+++..++.++.||+.||.|||++||+||||||+|||++++|.+||+|||+|+....    
T Consensus        92 mEy~-~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~  168 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFL  168 (275)
T ss_dssp             EECC-CEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC---------
T ss_pred             EeCC-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCCcc
Confidence            9999 78999999876  4499999999999999999999999999999999999999999999999999964321    


Q ss_pred             ----------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|+.       ...+|+|++|+++++|++|..||.
T Consensus       169 ~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~  213 (275)
T 3hyh_A          169 KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFD  213 (275)
T ss_dssp             ------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCC
Confidence                      1111       124599999999999999999995

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=4e-39  Score=329.84  Aligned_cols=178  Identities=24%  Similarity=0.361  Sum_probs=157.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ...|++++.||+|+||+||+|.++.+|+.||||++++.....   .+.+.+|+.+|+.++|||||+++++|.+++.+|||
T Consensus        73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv  149 (346)
T 4fih_A           73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  149 (346)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS---GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhH---HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            356999999999999999999999999999999998654332   34577899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      ||||+||+|.+++...   .+++..++.++.||+.||.|||++||+||||||+||||+.+|.+||+|||+|+....    
T Consensus       150 mEy~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~  226 (346)
T 4fih_A          150 MEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR  226 (346)
T ss_dssp             ECCCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC
T ss_pred             EeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCc
Confidence            9999999999999863   489999999999999999999999999999999999999999999999999975421    


Q ss_pred             -----C------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 -----K------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----~------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           .      |      .+-...|+|++|++++||++|..||.
T Consensus       227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~  271 (346)
T 4fih_A          227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYF  271 (346)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                 1      1      11233489999999999999999995

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=329.83  Aligned_cols=178  Identities=24%  Similarity=0.365  Sum_probs=158.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ...|++++.||+|+||.||+|.++.+|+.||||+++......   .+.+.+|+.+|+.++|||||+++++|.+.+.+|||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV  226 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  226 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS---GGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhH---HHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence            357999999999999999999999999999999998654332   35577899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      ||||+||+|.+++...   .+++..+..++.||+.||.|||++||+||||||+||||+.+|.+||+|||+|+.....   
T Consensus       227 mEy~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~  303 (423)
T 4fie_A          227 MEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR  303 (423)
T ss_dssp             EECCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC
T ss_pred             EeCCCCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCcc
Confidence            9999999999999764   4899999999999999999999999999999999999999999999999999754311   


Q ss_pred             ------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 ------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  |      .+-...|+|++|++++||++|..||.
T Consensus       304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~  348 (423)
T 4fie_A          304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYF  348 (423)
T ss_dssp             BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                        1      12234489999999999999999995

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=9e-39  Score=322.01  Aligned_cols=183  Identities=43%  Similarity=0.704  Sum_probs=153.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEc---CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ...++|++++.||+|+||+||+|++.   .+++.||+|++++...... ...++.+|+.+++.++|||||+++++|.+++
T Consensus        21 ~~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~-~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~   99 (304)
T 3ubd_A           21 ADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVR-DRVRTKMERDILVEVNHPFIVKLHYAFQTEG   99 (304)
T ss_dssp             CCGGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEE-ECC------CCCCCCCCTTEECEEEEEEETT
T ss_pred             CCccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChH-HHHHHHHHHHHHHHCCCCCCCeEEEEEEECC
Confidence            34468999999999999999999974   4688999999987654322 2345778999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|+|||||+||+|.+++.+.  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+...
T Consensus       100 ~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~  177 (304)
T 3ubd_A          100 KLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI  177 (304)
T ss_dssp             EEEEEECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred             EEEEEEEcCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence            999999999999999999875  349999999999999999999999999999999999999999999999999996432


Q ss_pred             ---------CC------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CK------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +.      |+      +...+|+|++|++++||++|..||.
T Consensus       178 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~  227 (304)
T 3ubd_A          178 DHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQ  227 (304)
T ss_dssp             ---CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCC
Confidence                     11      11      1133489999999999999999995

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=2.2e-37  Score=309.96  Aligned_cols=178  Identities=24%  Similarity=0.355  Sum_probs=154.7

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe----CCeEEE
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT----STHICL  383 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----~~~~~l  383 (489)
                      |++.+.||+|+||+||+|.++.+++.||+|.+.+... .....+.+.+|+.+++.++|||||+++++|.+    +..+||
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l  106 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL-TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence            3677889999999999999999999999999976543 34556789999999999999999999999875    356899


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEe-cCCcEEEEecCCccccCC
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQ-KDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld-~~g~vKL~DFGlS~~~~~  460 (489)
                      |||||+||+|.+++.+.  ..+++..+..++.||+.||.|||++|  |+||||||+||||+ .+|.+||+|||+|+....
T Consensus       107 vmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~  184 (290)
T 3fpq_A          107 VTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence            99999999999999875  45899999999999999999999998  99999999999997 489999999999974321


Q ss_pred             -------------CCce-----eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQV-----FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~~-----~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+.     -..+|+|++|++++||++|..||.
T Consensus       185 ~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~  230 (290)
T 3fpq_A          185 SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYS  230 (290)
T ss_dssp             TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             CccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                         1221     123489999999999999999994

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.2e-37  Score=313.31  Aligned_cols=184  Identities=21%  Similarity=0.319  Sum_probs=156.8

Q ss_pred             cccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      .+..++|.+.+.||+|+||+||+|.+.     .++..||+|.++..   .....+.+.+|+++|++++|||||+++++|.
T Consensus         9 ~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~   85 (299)
T 4asz_A            9 HIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SDNARKDFHREAELLTNLQHEHIVKFYGVCV   85 (299)
T ss_dssp             BCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             ccCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC---ChHHHHHHHHHHHHHHhCCCCCCccEEEEEe
Confidence            456678999999999999999999975     35789999999754   3455678999999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC
Q 042772          377 TSTHICLITDFCPGGELFALLDKQ-----------PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~-----------~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g  445 (489)
                      +.+.+|||||||++|+|.++|...           ....+++..+..++.||+.||.|||+++|+||||||+|||+++++
T Consensus        86 ~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~  165 (299)
T 4asz_A           86 EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENL  165 (299)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCC
Confidence            999999999999999999999763           234589999999999999999999999999999999999999999


Q ss_pred             cEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          446 HVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       446 ~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .+||+|||+|+....                 +|+      +...+|+|++|.+++|+++ |..||.
T Consensus       166 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~  232 (299)
T 4asz_A          166 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWY  232 (299)
T ss_dssp             CEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             cEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence            999999999964321                 111      1123489999999999997 999995

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=9.4e-38  Score=318.59  Aligned_cols=175  Identities=25%  Similarity=0.392  Sum_probs=153.9

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..+.|++.+.||+|+||+||+|.++.+|+.||||++++....        .+|+.+++.++|||||+++++|.+.+.+||
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~--------~~E~~il~~l~HpnIV~l~~~~~~~~~~~i  127 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR--------VEELVACAGLSSPRIVPLYGAVREGPWVNI  127 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC--------THHHHTTTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH--------HHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            346799999999999999999999999999999999865332        359999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-cEEEEecCCccccCC--
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFDLSFMTSC--  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-~vKL~DFGlS~~~~~--  460 (489)
                      |||||+||+|.++|.+.  +.+++..+..++.||+.||.|||++||+||||||+||||+.+| ++||+|||+|+....  
T Consensus       128 vmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~  205 (336)
T 4g3f_A          128 FMELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG  205 (336)
T ss_dssp             EECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred             EEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence            99999999999999875  4599999999999999999999999999999999999999987 699999999974321  


Q ss_pred             ------------C------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------K------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .      |+      +-..+|+|++|++++||++|..||.
T Consensus       206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~  257 (336)
T 4g3f_A          206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWT  257 (336)
T ss_dssp             --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSST
T ss_pred             cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCC
Confidence                        1      11      1123489999999999999999995

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-37  Score=310.66  Aligned_cols=183  Identities=23%  Similarity=0.352  Sum_probs=157.1

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      .+++..+++++.+.||+|+||+||+|.++.   .||||+++... ......+.+.+|+.++++++|||||++++++.. +
T Consensus        30 ~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~-~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~  104 (307)
T 3omv_A           30 YWEIEASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVD-PTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-D  104 (307)
T ss_dssp             CCBCCTTSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSS-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-S
T ss_pred             CcEEcHHHeEEeeEEeeCCCcEEEEEEECC---cEEEEEEEecC-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-C
Confidence            456778899999999999999999998764   58999986543 345567889999999999999999999998754 5


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|||||||+||+|.++|.... ..+++..+..++.||+.||.|||+++||||||||+||||++++.+||+|||+|+...
T Consensus       105 ~~~iVmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~  183 (307)
T 3omv_A          105 NLAIVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKS  183 (307)
T ss_dssp             SCEEEEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC--
T ss_pred             eEEEEEEcCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecc
Confidence            6899999999999999997653 358999999999999999999999999999999999999999999999999996432


Q ss_pred             -----------------CCCce---------eecccccchHHHHHHHHhCCcccC
Q 042772          460 -----------------CKPQV---------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----------------~~~~~---------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                       .+|+.         ...+|+|++|.+++|+++|..||.
T Consensus       184 ~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~  238 (307)
T 3omv_A          184 RWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYS  238 (307)
T ss_dssp             ----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCC
Confidence                             11222         124589999999999999999995

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=6.4e-37  Score=311.92  Aligned_cols=184  Identities=21%  Similarity=0.289  Sum_probs=155.0

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      .+...+|.+.+.||+|+||+||+|.++.     +++.||||.++..   .....+.|.+|+++|++++|||||+++++|.
T Consensus        37 ~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~  113 (329)
T 4aoj_A           37 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTMLQHQHIVRFFGVCT  113 (329)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             ccCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            4556789999999999999999999753     5889999999754   4455678999999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec
Q 042772          377 TSTHICLITDFCPGGELFALLDKQP-------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK  443 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~-------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~  443 (489)
                      +...+|||||||++|+|.+++....             ..++++..+..++.||+.||.|||+++|+||||||+||||++
T Consensus       114 ~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~  193 (329)
T 4aoj_A          114 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQ  193 (329)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEET
T ss_pred             ECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECC
Confidence            9999999999999999999997642             235899999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCccccCC-----------CCcee------------ecccccchHHHHHHHHh-CCcccC
Q 042772          444 DGHVVLTDFDLSFMTSC-----------KPQVF------------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       444 ~g~vKL~DFGlS~~~~~-----------~~~~~------------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ++.+||+|||+|+....           .+..|            ..+|+|++|.+++|+++ |..||.
T Consensus       194 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~  262 (329)
T 4aoj_A          194 GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWY  262 (329)
T ss_dssp             TTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             CCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCC
Confidence            99999999999974321           11111            23489999999999997 999995

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=7.5e-37  Score=308.71  Aligned_cols=185  Identities=18%  Similarity=0.300  Sum_probs=156.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      ++...++++.+.||+|+||+||+|.+.     .+++.||||.++...  .....+.|.+|+.++++++|||||++++++.
T Consensus        22 ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~   99 (308)
T 4gt4_A           22 EISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA--EGPLREEFRHEAMLRARLQHPNVVCLLGVVT   99 (308)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C--CC-CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc--ChHHHHHHHHHHHHHHhCCCCCCCCcceEEE
Confidence            456678999999999999999999974     357899999997542  3334577899999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe
Q 042772          377 TSTHICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ  442 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld  442 (489)
                      +...++||||||++|+|.++|..+.              ...+++..+..++.||+.||.|||+++||||||||+||||+
T Consensus       100 ~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~  179 (308)
T 4gt4_A          100 KDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVY  179 (308)
T ss_dssp             SSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC
T ss_pred             ECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEC
Confidence            9999999999999999999996532              23489999999999999999999999999999999999999


Q ss_pred             cCCcEEEEecCCccccCC-----------CCcee------------ecccccchHHHHHHHHh-CCcccC
Q 042772          443 KDGHVVLTDFDLSFMTSC-----------KPQVF------------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       443 ~~g~vKL~DFGlS~~~~~-----------~~~~~------------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +++.+||+|||+|+....           .+..|            ..+|+|++|.+++|+++ |..||.
T Consensus       180 ~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~  249 (308)
T 4gt4_A          180 DKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYC  249 (308)
T ss_dssp             GGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             CCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCC
Confidence            999999999999974321           11112            23489999999999997 899995

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4e-36  Score=302.10  Aligned_cols=151  Identities=22%  Similarity=0.335  Sum_probs=129.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST------  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~------  379 (489)
                      .+|++++.||+|+||+||+|.++.+|+.||+|.++...  .....+.+.+|+.+|+.++|||||+++++|...+      
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~   82 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ   82 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence            46999999999999999999999999999999997542  3445677889999999999999999999987543      


Q ss_pred             ------eEEEEEecCCCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEec
Q 042772          380 ------HICLITDFCPGGELFALLDKQPM-KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF  452 (489)
Q Consensus       380 ------~~~lVmEy~~ggsL~~~L~~~~~-~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DF  452 (489)
                            ++|+|||||+||+|.+++..... ...++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+||
T Consensus        83 ~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DF  162 (299)
T 4g31_A           83 PSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDF  162 (299)
T ss_dssp             ----CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC
T ss_pred             ccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccC
Confidence                  47999999999999999987532 22456778899999999999999999999999999999999999999999


Q ss_pred             CCcccc
Q 042772          453 DLSFMT  458 (489)
Q Consensus       453 GlS~~~  458 (489)
                      |+|+..
T Consensus       163 Gla~~~  168 (299)
T 4g31_A          163 GLVTAM  168 (299)
T ss_dssp             CCC---
T ss_pred             ccceec
Confidence            999753

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.7e-36  Score=311.89  Aligned_cols=179  Identities=18%  Similarity=0.331  Sum_probs=155.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------C
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------T  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------~  379 (489)
                      ++|++++.||+|+||+||+|.++.+|+.||||++++... .....+++.+|+.+|+.++|||||++++++...      .
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~  132 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD-VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK  132 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc-chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence            579999999999999999999999999999999976532 344567788999999999999999999987643      5


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|||||||+ |+|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+...
T Consensus       133 ~~~ivmE~~~-g~L~~~i~~~--~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~  209 (398)
T 4b99_A          133 SVYVVLDLME-SDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLC  209 (398)
T ss_dssp             CEEEEEECCS-EEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred             EEEEEEeCCC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecc
Confidence            7999999995 7899999775  459999999999999999999999999999999999999999999999999996431


Q ss_pred             -------------C------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 -------------C------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -------------~------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +      +|+.       ....|+|++|++++||++|..||.
T Consensus       210 ~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~  264 (398)
T 4b99_A          210 TSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFP  264 (398)
T ss_dssp             ------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             cCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCC
Confidence                         0      1111       123489999999999999999984

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.9e-35  Score=301.46  Aligned_cols=186  Identities=23%  Similarity=0.329  Sum_probs=157.0

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCC-----cEEEEEEeecccccchHHHHHHHHHHHHHHhCCC-CCcceeeEE
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAG-----ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH-PFLPTLYAS  374 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg-----~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l~~~  374 (489)
                      +++..++|++.+.||+|+||+||+|.+..++     +.||+|.++...  .....+.+.+|+.+|.++.| ||||+++++
T Consensus        59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~--~~~~~~~~~~E~~il~~l~hhpnIV~l~g~  136 (353)
T 4ase_A           59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLGA  136 (353)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEcccc--ChHHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence            3566788999999999999999999987643     689999997543  34456778999999999965 999999999


Q ss_pred             EEeC-CeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCE
Q 042772          375 FQTS-THICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI  439 (489)
Q Consensus       375 ~~~~-~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NI  439 (489)
                      |... ..+|||||||++|+|.++|....              ...+++..+..++.||+.||.|||+++||||||||+||
T Consensus       137 ~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NI  216 (353)
T 4ase_A          137 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNI  216 (353)
T ss_dssp             ECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             EEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccce
Confidence            8764 57999999999999999997632              23488999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEecCCccccCCCC-----------cee------------ecccccchHHHHHHHHh-CCcccC
Q 042772          440 LLQKDGHVVLTDFDLSFMTSCKP-----------QVF------------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       440 Lld~~g~vKL~DFGlS~~~~~~~-----------~~~------------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |+++++.+||+|||+|+......           ..|            ..+|+|++|++++|+++ |..||.
T Consensus       217 Ll~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~  289 (353)
T 4ase_A          217 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP  289 (353)
T ss_dssp             EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred             eeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCC
Confidence            99999999999999997543211           111            23499999999999986 999995

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.2e-34  Score=296.71  Aligned_cols=173  Identities=22%  Similarity=0.327  Sum_probs=149.7

Q ss_pred             cCcccccccCCCCceEEEEEEEc---CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~  381 (489)
                      ++|++.+.||+|+||+||+|.++   .+++.||+|.+.+..     ...++.+|+++|+.+ .||||++++++|.+.+++
T Consensus        21 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-----~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~   95 (361)
T 4f9c_A           21 NVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-----HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV   95 (361)
T ss_dssp             GTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-----CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred             CcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-----CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence            57999999999999999999875   467899999986542     234577899999988 699999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-CcEEEEecCCccccC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-GHVVLTDFDLSFMTS-  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-g~vKL~DFGlS~~~~-  459 (489)
                      |+|||||+||+|.+++..     +++..++.++.||+.||.|||++||+||||||+|||++.+ +.+||+|||+|+... 
T Consensus        96 ~lvmE~~~g~~L~~~~~~-----l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~  170 (361)
T 4f9c_A           96 VIAMPYLEHESFLDILNS-----LSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHD  170 (361)
T ss_dssp             EEEEECCCCCCHHHHHTT-----CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTT
T ss_pred             EEEEeCCCcccHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCC
Confidence            999999999999999842     8999999999999999999999999999999999999876 899999999995321 


Q ss_pred             ------------------------------------------CCCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------------------------------------CKPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------------------------------------~~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                                                .+|+       +....|+|++|++++||++|..||.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~  248 (361)
T 4f9c_A          171 TKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFY  248 (361)
T ss_dssp             CSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCC
Confidence                                                      0111       1223489999999999999999984

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=4.3e-34  Score=311.35  Aligned_cols=180  Identities=30%  Similarity=0.437  Sum_probs=158.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++++.||+|+||+||+|.++.+|+.||+|.+.+..   ....+.+.+|+.+|+.++||||++++++|.+...+|||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~---~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv  232 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH---ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  232 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc---hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            568999999999999999999999999999999997653   33456788899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC--CcEEEEecCCccccCCC-
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD--GHVVLTDFDLSFMTSCK-  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~--g~vKL~DFGlS~~~~~~-  461 (489)
                      ||||+||+|.++|.... ..+++..+..++.||+.||.|||++||+||||||+|||++.+  +.+||+|||+|+..... 
T Consensus       233 ~E~~~gg~L~~~i~~~~-~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~  311 (573)
T 3uto_A          233 YEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ  311 (573)
T ss_dssp             EECCCCCBHHHHHTCTT-SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS
T ss_pred             EeecCCCcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC
Confidence            99999999999997543 358999999999999999999999999999999999999854  89999999999754321 


Q ss_pred             -------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 -------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   |+      +-...|+|++|+++++|++|..||.
T Consensus       312 ~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~  357 (573)
T 3uto_A          312 SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG  357 (573)
T ss_dssp             EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                         11      1224488999999999999999985

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3.9e-34  Score=287.89  Aligned_cols=173  Identities=22%  Similarity=0.296  Sum_probs=142.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC----eE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST----HI  381 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----~~  381 (489)
                      .+|.+.+.||+|+||+||+|.+.  |+.||||+++...    ........|+..+.+++|||||++++++..++    .+
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~--g~~VAvK~l~~~~----~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~   76 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSRE----ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL   76 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEET--TEEEEEEEECGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEEC--CEEEEEEEECccc----hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEE
Confidence            35888899999999999999884  8899999996542    11122234555566789999999999998653    68


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC--------CCeecCCCCCCEEEecCCcEEEEecC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL--------GIIYRDLKPENILLQKDGHVVLTDFD  453 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~--------gIvHrDLKP~NILld~~g~vKL~DFG  453 (489)
                      |||||||++|+|.++|...   .+++..+..++.|++.||.|||++        +|+||||||+||||+.++.+||+|||
T Consensus        77 ~lV~Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFG  153 (303)
T 3hmm_A           77 WLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  153 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred             EEEecCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCC
Confidence            9999999999999999874   378999999999999999999987        99999999999999999999999999


Q ss_pred             CccccCC-------------------CCcee------------ecccccchHHHHHHHHhCCccc
Q 042772          454 LSFMTSC-------------------KPQVF------------YHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       454 lS~~~~~-------------------~~~~~------------~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      +|+....                   +|+..            ..+|+|++|.+++|+++|..||
T Consensus       154 la~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~  218 (303)
T 3hmm_A          154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIG  218 (303)
T ss_dssp             TCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBT
T ss_pred             CCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCC
Confidence            9864321                   12211            2358999999999999997665

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.1e-32  Score=280.95  Aligned_cols=184  Identities=37%  Similarity=0.687  Sum_probs=162.7

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++++.||+|+||+||+|.++.+|+.||+|++++...........+..|+.+++.++||||+++++++.+...+|
T Consensus         2 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~   81 (337)
T 1o6l_A            2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             CChHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEE
Confidence            45678999999999999999999999999999999998765444555677889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC---
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS---  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~---  459 (489)
                      +||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|....   
T Consensus        82 lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  159 (337)
T 1o6l_A           82 FVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG  159 (337)
T ss_dssp             EEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence            999999999999999875  348999999999999999999999999999999999999999999999999986421   


Q ss_pred             ------------CCCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------CKPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------~~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .+|+.      ....|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  206 (337)
T 1o6l_A          160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  206 (337)
T ss_dssp             CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCC
Confidence                        11221      234588999999999999999985

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=282.80  Aligned_cols=186  Identities=37%  Similarity=0.682  Sum_probs=161.0

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCC
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTST  379 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  379 (489)
                      ..+..++|++++.||+|+||.||+|.++.+++.||+|++.+...........+..|..+++.+ +||||+++++++.+..
T Consensus        18 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~   97 (353)
T 3txo_A           18 NRLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPD   97 (353)
T ss_dssp             -----CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             CCCchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCC
Confidence            346678999999999999999999999999999999999876555555677788999999988 7999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|+||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|+...
T Consensus        98 ~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~  175 (353)
T 3txo_A           98 RLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI  175 (353)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred             EEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence            999999999999999999875  348999999999999999999999999999999999999999999999999987422


Q ss_pred             C---------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 C---------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~---------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .               +|+.      ....|+|++|+++++|++|..||.
T Consensus       176 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~  225 (353)
T 3txo_A          176 CNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFE  225 (353)
T ss_dssp             C---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCC
Confidence            1               1111      123489999999999999999995

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=2.9e-32  Score=278.56  Aligned_cols=185  Identities=31%  Similarity=0.596  Sum_probs=164.6

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~  380 (489)
                      .+..++|++++.||+|+||.||+|.++.+++.||+|++.+...........+..|..+++.+ +||||+++++++.+...
T Consensus         5 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~   84 (345)
T 3a8x_A            5 PLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR   84 (345)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             CCchhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCE
Confidence            45678899999999999999999999999999999999887666667778889999999987 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|+....
T Consensus        85 ~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~  162 (345)
T 3a8x_A           85 LFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR  162 (345)
T ss_dssp             EEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred             EEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence            99999999999999999875  3489999999999999999999999999999999999999999999999999874211


Q ss_pred             ---------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|      ......|+|++|++++++++|..||.
T Consensus       163 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  211 (345)
T 3a8x_A          163 PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  211 (345)
T ss_dssp             TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             CCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcC
Confidence                           01      11234589999999999999999984

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=284.68  Aligned_cols=186  Identities=34%  Similarity=0.609  Sum_probs=165.9

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..+..++|++++.||+|+||.||+|.++.+++.||+|.+.+...........+.+|+.+++.++||||++++++|.+...
T Consensus        10 ~~v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~   89 (384)
T 4fr4_A           10 EDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEED   89 (384)
T ss_dssp             CCCCGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             CCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence            45677899999999999999999999999999999999987655555567788899999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-  459 (489)
                      +|+||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|.... 
T Consensus        90 ~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  167 (384)
T 4fr4_A           90 MFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR  167 (384)
T ss_dssp             EEEEECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence            99999999999999999875  348999999999999999999999999999999999999999999999999996432 


Q ss_pred             -------------CCCce---------eecccccchHHHHHHHHhCCcccC
Q 042772          460 -------------CKPQV---------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -------------~~~~~---------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   .+|+.         ....|+|++|++++++++|..||.
T Consensus       168 ~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~  218 (384)
T 4fr4_A          168 ETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYH  218 (384)
T ss_dssp             TCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCC
Confidence                         12222         224589999999999999999995

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.98  E-value=2.3e-32  Score=276.29  Aligned_cols=184  Identities=40%  Similarity=0.717  Sum_probs=162.6

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +.+++|++++.||+|+||.||+|.++.+|+.||+|++++...........+..|..+++.++||||+++++++.+...+|
T Consensus         3 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~   82 (318)
T 1fot_A            3 YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIF   82 (318)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEE
T ss_pred             CChHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEE
Confidence            34678999999999999999999999999999999998765444445677888999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-  461 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-  461 (489)
                      +||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|...... 
T Consensus        83 lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~  160 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT  160 (318)
T ss_dssp             EEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB
T ss_pred             EEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCCcc
Confidence            999999999999999875  34899999999999999999999999999999999999999999999999999643311 


Q ss_pred             -----------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 -----------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -----------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 |      ......|+|++|++++++++|..||.
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  204 (318)
T 1fot_A          161 YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFY  204 (318)
T ss_dssp             CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCC
Confidence                       1      11234589999999999999999984

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.98  E-value=2.4e-32  Score=284.92  Aligned_cols=185  Identities=30%  Similarity=0.597  Sum_probs=160.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~  380 (489)
                      .+.+++|++++.||+|+||+||+|.++.+++.||+|++++...........+..|..++.++ +||||++++++|.+...
T Consensus        48 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~  127 (396)
T 4dc2_A           48 SLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR  127 (396)
T ss_dssp             -CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CCChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCE
Confidence            45678899999999999999999999999999999999887665555667788899999876 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+||||++||+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|+....
T Consensus       128 ~~lV~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~  205 (396)
T 4dc2_A          128 LFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR  205 (396)
T ss_dssp             EEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEEEEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence            99999999999999999875  3489999999999999999999999999999999999999999999999999974211


Q ss_pred             ---------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|      .+....|+|++|+++++|++|..||.
T Consensus       206 ~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~  254 (396)
T 4dc2_A          206 PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  254 (396)
T ss_dssp             TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSST
T ss_pred             CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCc
Confidence                           11      11234589999999999999999994

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.98  E-value=1e-32  Score=288.85  Aligned_cols=184  Identities=31%  Similarity=0.561  Sum_probs=161.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++++.||+|+||+||+|.++.+++.||+|++.+...........+..|+.+++.++||||++++++|.+...+
T Consensus        65 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~  144 (410)
T 3v8s_A           65 RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYL  144 (410)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEE
Confidence            34567899999999999999999999999999999999765443333445577899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+||||++||+|.+++...   .+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|..... 
T Consensus       145 ~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~  221 (410)
T 3v8s_A          145 YMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE  221 (410)
T ss_dssp             EEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             EEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccC
Confidence            9999999999999999864   389999999999999999999999999999999999999999999999999864321 


Q ss_pred             ---------------CCc----------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQ----------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~----------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+          .....|+|++|+++++|++|..||.
T Consensus       222 ~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~  274 (410)
T 3v8s_A          222 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFY  274 (410)
T ss_dssp             SEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCC
Confidence                           111          2235689999999999999999985

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.98  E-value=5.2e-32  Score=274.79  Aligned_cols=183  Identities=27%  Similarity=0.454  Sum_probs=162.2

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ...++|++++.||+|+||.||+|.+..+|+.||+|++.+... .....+.+.+|+.+++.++||||+++++++.+...+|
T Consensus        12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~   90 (328)
T 3fe3_A           12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQL-NPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLY   90 (328)
T ss_dssp             CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEE
Confidence            346789999999999999999999999999999999976543 4455678889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      +||||+++|+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|.....  
T Consensus        91 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  168 (328)
T 3fe3_A           91 LIMEYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG  168 (328)
T ss_dssp             EEECCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC
T ss_pred             EEEECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC
Confidence            999999999999999775  3489999999999999999999999999999999999999999999999999964321  


Q ss_pred             ------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+.       ...+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~  215 (328)
T 3fe3_A          169 KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFD  215 (328)
T ss_dssp             GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCC
Confidence                        1111       134699999999999999999995

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.98  E-value=2.2e-32  Score=286.48  Aligned_cols=186  Identities=30%  Similarity=0.509  Sum_probs=162.9

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++++.||+|+||.||+|.++.+|+.||+|++++...........+..|+.++..++||||++++++|.+...+
T Consensus        57 ~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~  136 (412)
T 2vd5_A           57 RLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYL  136 (412)
T ss_dssp             SCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEE
T ss_pred             cCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEE
Confidence            45668899999999999999999999999999999999875444444556688899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+||||++||+|.+++.+.. ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|..... 
T Consensus       137 ~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~  215 (412)
T 2vd5_A          137 YLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRAD  215 (412)
T ss_dssp             EEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             EEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheeccCC
Confidence            99999999999999998743 3489999999999999999999999999999999999999999999999999864321 


Q ss_pred             ---------------CCc-------------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQ-------------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~-------------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+             +....|+|++|++++|+++|..||.
T Consensus       216 ~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~  271 (412)
T 2vd5_A          216 GTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFY  271 (412)
T ss_dssp             SCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCC
Confidence                           111             1234589999999999999999985

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.98  E-value=4.5e-32  Score=277.45  Aligned_cols=185  Identities=34%  Similarity=0.640  Sum_probs=159.9

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~  380 (489)
                      .+..++|++.+.||+|+||.||+|.++.+++.||+|++++...........+..|..++..+ +||||+++++++.+...
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~   92 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN   92 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence            34567899999999999999999999999999999999876543444566778899999876 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+||||++||+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.+|++||+|||+|+....
T Consensus        93 ~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  170 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENML  170 (345)
T ss_dssp             EEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhccc
Confidence            99999999999999999875  3489999999999999999999999999999999999999999999999999864311


Q ss_pred             ---------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|      ......|+|++|++++++++|..||.
T Consensus       171 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  219 (345)
T 1xjd_A          171 GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFH  219 (345)
T ss_dssp             TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCC
Confidence                           01      11234489999999999999999985

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.97  E-value=5.7e-32  Score=277.02  Aligned_cols=184  Identities=34%  Similarity=0.631  Sum_probs=163.1

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ..+++|++++.||+|+||.||+|.++.+|+.||+|++.+...........+.+|+.+++.++||||+++++++.+...+|
T Consensus        38 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  117 (350)
T 1rdq_E           38 AQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY  117 (350)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CCHHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEE
Confidence            34578999999999999999999999999999999998765444455678889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-  461 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-  461 (489)
                      +||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++..... 
T Consensus       118 lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~  195 (350)
T 1rdq_E          118 MVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT  195 (350)
T ss_dssp             EEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB
T ss_pred             EEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCCc
Confidence            999999999999999875  34899999999999999999999999999999999999999999999999999754321 


Q ss_pred             -----------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 -----------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -----------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 |      ......|+|++|++++++++|..||.
T Consensus       196 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  239 (350)
T 1rdq_E          196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFF  239 (350)
T ss_dssp             CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCC
Confidence                       1      11234589999999999999999985

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.97  E-value=3.7e-32  Score=286.91  Aligned_cols=186  Identities=32%  Similarity=0.515  Sum_probs=162.0

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++++.||+|+||+||+|.++.+++.||+|++++...........+..|+.++..++||||++++++|.+...+
T Consensus        70 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~  149 (437)
T 4aw2_A           70 RLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNL  149 (437)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEE
T ss_pred             cCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEE
Confidence            45567899999999999999999999999999999999865443333445578899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+||||++||+|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+.... 
T Consensus       150 ~lV~Ey~~gg~L~~~l~~~~-~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~  228 (437)
T 4aw2_A          150 YLVMDYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMED  228 (437)
T ss_dssp             EEEECCCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             EEEEecCCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhcccC
Confidence            99999999999999998742 4489999999999999999999999999999999999999999999999999854321 


Q ss_pred             ---------------CCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+.           ....|+|++|++++||++|..||.
T Consensus       229 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~  282 (437)
T 4aw2_A          229 GTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFY  282 (437)
T ss_dssp             SCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCC
Confidence                           1221           224589999999999999999985

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.97  E-value=3.9e-32  Score=280.92  Aligned_cols=185  Identities=37%  Similarity=0.594  Sum_probs=152.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHH-HHhCCCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI-MSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~i-l~~l~HpnIv~l~~~~~~~~~  380 (489)
                      .+..++|++++.||+|+||.||+|.++.+++.||+|++.+...........+..|..+ ++.++||||++++++|.+...
T Consensus        34 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~  113 (373)
T 2r5t_A           34 HAKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADK  113 (373)
T ss_dssp             TCCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSE
T ss_pred             CCChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCE
Confidence            4556789999999999999999999999999999999988765555556667777776 567899999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++....
T Consensus       114 ~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~  191 (373)
T 2r5t_A          114 LYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE  191 (373)
T ss_dssp             EEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred             EEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence            99999999999999999875  3489999999999999999999999999999999999999999999999999874211


Q ss_pred             ----------CCc-----------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KPQ-----------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~~-----------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                .+.           +....|+|++|++++|+++|..||.
T Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~  240 (373)
T 2r5t_A          192 HNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFY  240 (373)
T ss_dssp             CCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCC
Confidence                      111           1234589999999999999999985

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.97  E-value=6.1e-32  Score=277.33  Aligned_cols=185  Identities=33%  Similarity=0.599  Sum_probs=160.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~  380 (489)
                      .+..++|++++.||+|+||.||+|.++.+++.||+|++++...........+..|..++..+ .||||+++++++.+...
T Consensus        16 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~   95 (353)
T 2i0e_A           16 RMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR   95 (353)
T ss_dssp             ---CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSE
T ss_pred             CCchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCE
Confidence            45678999999999999999999999999999999999876544445567788899999887 79999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|.....
T Consensus        96 ~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  173 (353)
T 2i0e_A           96 LYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW  173 (353)
T ss_dssp             EEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence            99999999999999999875  3489999999999999999999999999999999999999999999999999874211


Q ss_pred             ---------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+      .....|+|++|++++++++|..||.
T Consensus       174 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~  222 (353)
T 2i0e_A          174 DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE  222 (353)
T ss_dssp             TTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCC
Confidence                           011      1224489999999999999999985

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.97  E-value=1.7e-31  Score=265.62  Aligned_cols=184  Identities=21%  Similarity=0.269  Sum_probs=162.9

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++++.||+|+||.||+|.+..+++.||+|.+...........+.+.+|+.+++.++||||+++++++......|
T Consensus         8 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~   87 (294)
T 4eqm_A            8 IINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYY   87 (294)
T ss_dssp             CEETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEE
T ss_pred             HhhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEE
Confidence            34568999999999999999999999999999999997665556667788999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-  461 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-  461 (489)
                      +||||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|...... 
T Consensus        88 lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  165 (294)
T 4eqm_A           88 LVMEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS  165 (294)
T ss_dssp             EEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred             EEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence            999999999999999875  34899999999999999999999999999999999999999999999999998643211 


Q ss_pred             ---------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ---------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ---------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     |+      ....+|+|++|++++++++|..||.
T Consensus       166 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~  213 (294)
T 4eqm_A          166 LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN  213 (294)
T ss_dssp             ---------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence                           11      1123589999999999999999995

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.97  E-value=3.9e-31  Score=263.64  Aligned_cols=178  Identities=22%  Similarity=0.328  Sum_probs=157.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+......   ....+.+|+.+++.++||||+++++++......|+|
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   95 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP---KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCS---CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccccc---HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence            46899999999999999999999999999999999765322   245678899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      |||+++|+|.+++...   .+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|......   
T Consensus        96 ~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  172 (297)
T 3fxz_A           96 MEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK  172 (297)
T ss_dssp             EECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             EECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccc
Confidence            9999999999999874   3899999999999999999999999999999999999999999999999998643311   


Q ss_pred             ------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  |+      ....+|+|++|++++++++|..||.
T Consensus       173 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  217 (297)
T 3fxz_A          173 RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYL  217 (297)
T ss_dssp             BCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                        11      1234489999999999999999985

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=260.08  Aligned_cols=182  Identities=21%  Similarity=0.328  Sum_probs=160.1

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|.+...   .....+.+.+|+.+++.++||||+++++++.+....+
T Consensus         7 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   83 (310)
T 3s95_A            7 FRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF---DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLN   83 (310)
T ss_dssp             ECGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE
T ss_pred             eChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeE
Confidence            3457899999999999999999999999999999988543   4556678899999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      +||||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....  
T Consensus        84 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  162 (310)
T 3s95_A           84 FITEYIKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK  162 (310)
T ss_dssp             EEEECCTTCBHHHHHHHCC-TTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred             EEEEecCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence            9999999999999998753 3489999999999999999999999999999999999999999999999999964321  


Q ss_pred             ---------------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                                 +|+      ....+|+|++|++++++++|..||.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~  223 (310)
T 3s95_A          163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADP  223 (310)
T ss_dssp             -----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSST
T ss_pred             ccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCc
Confidence                                       111      1234589999999999999998875

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.97  E-value=3.7e-31  Score=287.71  Aligned_cols=187  Identities=30%  Similarity=0.509  Sum_probs=165.3

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||.||+|.++.+|+.||+|++.+...........+.+|+.+++.++||||+++++++.+...+
T Consensus       180 ~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l  259 (576)
T 2acx_A          180 PVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDAL  259 (576)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             CccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEE
Confidence            35667899999999999999999999999999999999876544445567788999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      |+||||++||+|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|......
T Consensus       260 ~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~  339 (576)
T 2acx_A          260 CLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG  339 (576)
T ss_dssp             EEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence            99999999999999998765556999999999999999999999999999999999999999999999999999754311


Q ss_pred             --------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 --------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 --------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    |      .+....|+|++|++++++++|..||.
T Consensus       340 ~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~  386 (576)
T 2acx_A          340 QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQ  386 (576)
T ss_dssp             CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSS
T ss_pred             ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCc
Confidence                          1      11233489999999999999999985

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.97  E-value=6.2e-31  Score=261.56  Aligned_cols=176  Identities=14%  Similarity=0.106  Sum_probs=158.2

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|++.............+.+|..++..++||||+++++++...+..|
T Consensus        28 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~  107 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGL  107 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             EecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEE
Confidence            44478999999999999999999999999999999998765555666788899999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCCC
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKP  462 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~~  462 (489)
                      +||||++|++|.+++...    .....+..++.|++.||.|||++||+||||||+|||++.+|.+||+++|...      
T Consensus       108 lv~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~~~------  177 (286)
T 3uqc_A          108 VVAEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATMP------  177 (286)
T ss_dssp             EEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCCCT------
T ss_pred             EEEEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEeccccC------
Confidence            999999999999999653    3566788899999999999999999999999999999999999999877652      


Q ss_pred             ceeecccccchHHHHHHHHhCCcccC
Q 042772          463 QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       463 ~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .....+|+|++|++++++++|..||.
T Consensus       178 ~~~~~~Di~slG~il~elltg~~Pf~  203 (286)
T 3uqc_A          178 DANPQDDIRGIGASLYALLVNRWPLP  203 (286)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSEECSC
T ss_pred             CCCchhHHHHHHHHHHHHHHCCCCCC
Confidence            24467799999999999999999985

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.1e-30  Score=263.68  Aligned_cols=179  Identities=21%  Similarity=0.312  Sum_probs=157.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+...    ......+.+|+.+++.++||||+++++++.+...+++|
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~----~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   79 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK----GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC----THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC----cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence            36799999999999999999999999999999998643    23445678899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec--CCcEEEEecCCccccCCC-
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK--DGHVVLTDFDLSFMTSCK-  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~--~g~vKL~DFGlS~~~~~~-  461 (489)
                      |||++||+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.  ++.+||+|||++...... 
T Consensus        80 ~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~  158 (321)
T 1tki_A           80 FEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD  158 (321)
T ss_dssp             ECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC
T ss_pred             EEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC
Confidence            99999999999997653 35899999999999999999999999999999999999987  789999999999754321 


Q ss_pred             -------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 -------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   |+      ....+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  204 (321)
T 1tki_A          159 NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFL  204 (321)
T ss_dssp             EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence                         11      1234589999999999999999985

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.97  E-value=7.4e-31  Score=270.08  Aligned_cols=182  Identities=27%  Similarity=0.389  Sum_probs=158.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch---HHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR---NKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .++|++.+.||+|+||.||+|.++.+|+.||+|.+++......   ...+.+.+|+.+++.++||||++++++|.+...+
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            3579999999999999999999999999999999987543221   1346788899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC----cEEEEecCCccc
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG----HVVLTDFDLSFM  457 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g----~vKL~DFGlS~~  457 (489)
                      |+||||++||+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++    .+||+|||++..
T Consensus        91 ~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~  168 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEE
T ss_pred             EEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceE
Confidence            9999999999999999765  4589999999999999999999999999999999999998777    799999999965


Q ss_pred             cCCC--------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          458 TSCK--------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~~--------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....              |      ......|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~  219 (361)
T 2yab_A          169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFL  219 (361)
T ss_dssp             CCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             cCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence            4321              1      11224589999999999999999985

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.1e-31  Score=270.35  Aligned_cols=182  Identities=29%  Similarity=0.459  Sum_probs=159.3

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++.+...........+.+|+.+++.++||||+++++++.....+++
T Consensus         7 ~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   86 (336)
T 3h4j_B            7 HIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM   86 (336)
T ss_dssp             EETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            35689999999999999999999999999999999976544333344678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      ||||+ +|+|.+++...  ..+++..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||+|.....   
T Consensus        87 v~E~~-~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~  163 (336)
T 3h4j_B           87 VIEYA-GGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF  163 (336)
T ss_dssp             EECCC-CEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT
T ss_pred             EEECC-CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc
Confidence            99999 78999998775  3489999999999999999999999999999999999999999999999999864321   


Q ss_pred             -----------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|+.       ...+|+|++|++++++++|..||.
T Consensus       164 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~  209 (336)
T 3h4j_B          164 LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFD  209 (336)
T ss_dssp             TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSB
T ss_pred             cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCC
Confidence                       1222       124589999999999999999985

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.97  E-value=6.6e-31  Score=284.31  Aligned_cols=187  Identities=30%  Similarity=0.524  Sum_probs=164.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||+||+|.++.+|+.||+|++.+...........+..|+.+++.++||||++++++|.+...+
T Consensus       181 ~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l  260 (543)
T 3c4z_A          181 PMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDL  260 (543)
T ss_dssp             CCCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             cCChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEE
Confidence            45668899999999999999999999999999999999876554445567888999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          382 CLITDFCPGGELFALLDKQP--MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~--~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      |+||||++||+|.+++....  ...+++..+..++.||+.||.|||++||+||||||+|||++.+|++||+|||+++...
T Consensus       261 ~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~  340 (543)
T 3c4z_A          261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK  340 (543)
T ss_dssp             EEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence            99999999999999997643  3458999999999999999999999999999999999999999999999999996432


Q ss_pred             CC---------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 CK---------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~~---------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..               |+      +....|+|++|++++||++|..||.
T Consensus       341 ~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~  390 (543)
T 3c4z_A          341 AGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFR  390 (543)
T ss_dssp             TTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCC
Confidence            11               11      1223488999999999999999985

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.97  E-value=1.3e-30  Score=269.09  Aligned_cols=184  Identities=19%  Similarity=0.295  Sum_probs=162.4

Q ss_pred             cccCcccccccCCC--CceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          304 GLHHFKPIKPLGCG--DTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       304 ~~~~y~~~~~LG~G--~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ..++|++++.||+|  +||.||+|.++.+++.||+|.+..... .......+.+|+.+++.++||||+++++++...+.+
T Consensus        23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  101 (389)
T 3gni_B           23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEAC-SNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL  101 (389)
T ss_dssp             CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEeccccc-ChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEE
Confidence            34689999999999  999999999999999999999986543 345667888899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      |+||||+++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....  
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~  181 (389)
T 3gni_B          102 WVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISH  181 (389)
T ss_dssp             EEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEET
T ss_pred             EEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeeccc
Confidence            999999999999999988755669999999999999999999999999999999999999999999999999874210  


Q ss_pred             --------------------CCCc--------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 --------------------CKPQ--------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 --------------------~~~~--------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                          .+|+        ....+|+|++|++++++++|..||.
T Consensus       182 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  238 (389)
T 3gni_B          182 GQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFK  238 (389)
T ss_dssp             TEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCC
Confidence                                1121        2234589999999999999999985

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.97  E-value=8e-31  Score=264.86  Aligned_cols=184  Identities=25%  Similarity=0.328  Sum_probs=158.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCc---EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGE---LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~---~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      .+..++|++.+.||+|+||.||+|.+..+++   .||+|.+....  .....+.+.+|+.+++.++||||+++++++...
T Consensus        45 ~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  122 (325)
T 3kul_A           45 EIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY--TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRG  122 (325)
T ss_dssp             BCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGG
T ss_pred             ccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC
Confidence            4567889999999999999999999986554   59999997542  344567788999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ...|+||||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  201 (325)
T 3kul_A          123 RLAMIVTEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVL  201 (325)
T ss_dssp             GCCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             CccEEEeeCCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence            99999999999999999997653 34899999999999999999999999999999999999999999999999999754


Q ss_pred             CCC------------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SCK------------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~~------------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ...                  |+      ....+|+|++|++++++++ |..||.
T Consensus       202 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~  256 (325)
T 3kul_A          202 EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYW  256 (325)
T ss_dssp             C----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             ccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcc
Confidence            321                  11      1123489999999999998 999984

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.97  E-value=2.6e-31  Score=279.94  Aligned_cols=185  Identities=37%  Similarity=0.684  Sum_probs=153.2

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++++.||+|+||.||+|.+..+|+.||+|++.+...........+..|+.+++.++||||+++++++.....+
T Consensus       144 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  223 (446)
T 4ejn_A          144 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRL  223 (446)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEE
T ss_pred             CCChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEE
Confidence            45567899999999999999999999999999999999876554555667788899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      |+||||+++|+|.+++...  ..+++..+..++.||+.||.|||+ +||+||||||+|||++.++.+||+|||+|+....
T Consensus       224 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  301 (446)
T 4ejn_A          224 CFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK  301 (446)
T ss_dssp             EEEECCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred             EEEEeeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence            9999999999999999875  348999999999999999999998 9999999999999999999999999999864221


Q ss_pred             ---------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+      .....|+|++|++++++++|..||.
T Consensus       302 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  350 (446)
T 4ejn_A          302 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  350 (446)
T ss_dssp             -----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCC
Confidence                           111      1234489999999999999999985

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.97  E-value=1.1e-30  Score=264.11  Aligned_cols=185  Identities=39%  Similarity=0.621  Sum_probs=151.3

Q ss_pred             cccccCcccccccCCCCceEEEEEEEc---CCCcEEEEEEeeccccc-chHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVML-NRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      .+..++|++.+.||+|+||.||+|...   .+++.||+|++++.... .......+.+|+.+++.++||||+++++++..
T Consensus        13 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   92 (327)
T 3a62_A           13 KIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQT   92 (327)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEEC
T ss_pred             CCCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEc
Confidence            455678999999999999999999985   68999999999765432 23345667889999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      ...+|+||||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||++..
T Consensus        93 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~  170 (327)
T 3a62_A           93 GGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE  170 (327)
T ss_dssp             SSCEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence            99999999999999999999875  3489999999999999999999999999999999999999999999999999864


Q ss_pred             cCC---------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC---------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~---------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...               +|+      .....|+|++|++++++++|..||.
T Consensus       171 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~  222 (327)
T 3a62_A          171 SIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFT  222 (327)
T ss_dssp             --------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCC
Confidence            211               111      1224489999999999999999985

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.97  E-value=1.7e-30  Score=266.92  Aligned_cols=181  Identities=26%  Similarity=0.394  Sum_probs=158.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.++.+++.||+|++..... .....+.+.+|+.+++.++||||+++++++.+....|+|
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL-SARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            4579999999999999999999999999999999976543 344567788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC---CcEEEEecCCccccCCC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD---GHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~---g~vKL~DFGlS~~~~~~  461 (489)
                      |||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.+   +.+||+|||++......
T Consensus       107 ~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~  184 (362)
T 2bdw_A          107 FDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS  184 (362)
T ss_dssp             ECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTC
T ss_pred             EecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCC
Confidence            9999999999999765  448999999999999999999999999999999999999865   45999999999654311


Q ss_pred             --------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 --------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 --------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    |      ......|+|++|++++++++|..||.
T Consensus       185 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~  231 (362)
T 2bdw_A          185 EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFW  231 (362)
T ss_dssp             CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                          1      12234589999999999999999984

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.97  E-value=1.2e-30  Score=266.49  Aligned_cols=184  Identities=21%  Similarity=0.336  Sum_probs=156.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc--hHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN--RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      .++|++.+.||+|+||.||+|.++.+++.||+|++.......  ....+.+.+|+.+++.++||||+++++++.....+|
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            467999999999999999999999999999999997543221  113567889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc---EEEEecCCccc
Q 042772          383 LITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH---VVLTDFDLSFM  457 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~---vKL~DFGlS~~  457 (489)
                      +|||||+|++|.+++...  ....+++..+..++.||+.||.|||++||+||||||+|||++.++.   +||+|||++..
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence            999999999999888653  2335899999999999999999999999999999999999986654   99999999965


Q ss_pred             cCCC---------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          458 TSCK---------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~~---------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....               |      ......|+|++|++++++++|..||.
T Consensus       183 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  234 (351)
T 3c0i_A          183 LGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFY  234 (351)
T ss_dssp             CCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCC
Confidence            3311               1      11234589999999999999999984

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.97  E-value=4.2e-31  Score=264.35  Aligned_cols=182  Identities=22%  Similarity=0.297  Sum_probs=157.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC----e
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST----H  380 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----~  380 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.............+.+|+.+++.++||||+++++++....    .
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            468999999999999999999999999999999998765556666778899999999999999999999987654    3


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      .|+||||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  168 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIAD  168 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC-----
T ss_pred             cEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccc
Confidence            59999999999999999875  3489999999999999999999999999999999999999999999999999864321


Q ss_pred             ------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                        +|+      ....+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~  220 (311)
T 3ork_A          169 SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT  220 (311)
T ss_dssp             -------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence                              111      1224589999999999999999985

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.97  E-value=8.8e-31  Score=259.92  Aligned_cols=184  Identities=28%  Similarity=0.499  Sum_probs=152.6

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc-----------------------hHHHHHHHHHHH
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-----------------------RNKVHRACIERE  358 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~-----------------------~~~~~~~~~E~~  358 (489)
                      .+..++|++.+.||+|+||.||+|.+..+++.||+|++.+.....                       ....+.+.+|+.
T Consensus         9 ~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~   88 (298)
T 2zv2_A            9 CVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIA   88 (298)
T ss_dssp             -CEETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHH
T ss_pred             ceeecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHH
Confidence            455678999999999999999999999999999999997653221                       122456888999


Q ss_pred             HHHhCCCCCcceeeEEEEe--CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCC
Q 042772          359 IMSLLDHPFLPTLYASFQT--STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKP  436 (489)
Q Consensus       359 il~~l~HpnIv~l~~~~~~--~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP  436 (489)
                      +++.++||||+++++++..  ...+|+||||+++++|.+++..   ..+++..+..++.||+.||.|||++||+||||||
T Consensus        89 ~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp  165 (298)
T 2zv2_A           89 ILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKP  165 (298)
T ss_dssp             HHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCG
T ss_pred             HHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCH
Confidence            9999999999999999986  5689999999999999886543   4589999999999999999999999999999999


Q ss_pred             CCEEEecCCcEEEEecCCccccCC---------------CCcee---------ecccccchHHHHHHHHhCCcccC
Q 042772          437 ENILLQKDGHVVLTDFDLSFMTSC---------------KPQVF---------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       437 ~NILld~~g~vKL~DFGlS~~~~~---------------~~~~~---------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +|||++.++.+||+|||++.....               +|+..         ..+|+|++|++++++++|..||.
T Consensus       166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  241 (298)
T 2zv2_A          166 SNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFM  241 (298)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             HHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence            999999999999999999864321               12221         23489999999999999999985

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=260.96  Aligned_cols=183  Identities=26%  Similarity=0.348  Sum_probs=157.0

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC--eE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST--HI  381 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~  381 (489)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++.....  ......+.+|+.+++.++||||+++++++....  ..
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   84 (319)
T 4euu_A            7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHK   84 (319)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCE
T ss_pred             CCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceE
Confidence            44689999999999999999999999999999999975432  223566778999999999999999999988765  78


Q ss_pred             EEEEecCCCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE----ecCCcEEEEecCCcc
Q 042772          382 CLITDFCPGGELFALLDKQPM-KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL----QKDGHVVLTDFDLSF  456 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~-~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl----d~~g~vKL~DFGlS~  456 (489)
                      ++||||+++++|.+++..... ..+++..+..++.||+.||.|||++||+||||||+|||+    +.++.+||+|||+|+
T Consensus        85 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~  164 (319)
T 4euu_A           85 VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR  164 (319)
T ss_dssp             EEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred             EEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence            999999999999999987532 238999999999999999999999999999999999999    777889999999996


Q ss_pred             ccCC--------------CCc--------------eeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSC--------------KPQ--------------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~--------------~~~--------------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....              +|+              ....+|+|++|++++++++|..||.
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  224 (319)
T 4euu_A          165 ELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFR  224 (319)
T ss_dssp             ECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEE
T ss_pred             ecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            5321              111              1234599999999999999999995

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.97  E-value=7.1e-31  Score=265.21  Aligned_cols=180  Identities=24%  Similarity=0.399  Sum_probs=155.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||.||+|.+..+++.||+|++.....  ......+.+|+.+++.++||||+++++++......|+|
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   83 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc--cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            4689999999999999999999999999999999975432  22335677899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....     
T Consensus        84 ~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  161 (323)
T 3tki_A           84 LEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE  161 (323)
T ss_dssp             EECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred             EEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcc
Confidence            9999999999999765  348999999999999999999999999999999999999999999999999996421     


Q ss_pred             ------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .+|+.       ....|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  209 (323)
T 3tki_A          162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD  209 (323)
T ss_dssp             CCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCS
T ss_pred             cccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCC
Confidence                        01111       124589999999999999999985

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=261.78  Aligned_cols=181  Identities=27%  Similarity=0.414  Sum_probs=157.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch---HHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR---NKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ++|++.+.||+|+||.||+|.++.+++.||+|.+.+......   .....+.+|+.+++.++||||+++++++.....++
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            569999999999999999999999999999999976543211   13567888999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC----cEEEEecCCcccc
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG----HVVLTDFDLSFMT  458 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g----~vKL~DFGlS~~~  458 (489)
                      +||||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++    .+||+|||++...
T Consensus        91 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~  168 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI  168 (326)
T ss_dssp             EEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeEC
Confidence            999999999999999765  4589999999999999999999999999999999999999887    8999999999654


Q ss_pred             CCC--------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 SCK--------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~~--------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              |+      ....+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  218 (326)
T 2y0a_A          169 DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFL  218 (326)
T ss_dssp             CTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             CCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCC
Confidence            311              11      1234589999999999999999984

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.97  E-value=2.6e-30  Score=255.81  Aligned_cols=179  Identities=18%  Similarity=0.299  Sum_probs=154.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||+||+|.++.+++.||+|.+..... .......+.+|+.+++.++||||+++++++.+...+++||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   80 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF   80 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCS-STTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCC-cCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEE
Confidence            579999999999999999999999999999999976542 3444567888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+++ +|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|.....     
T Consensus        81 e~~~~-~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  158 (292)
T 3o0g_A           81 EFCDQ-DLKKYFDSCN-GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY  158 (292)
T ss_dssp             ECCSE-EHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCC
T ss_pred             ecCCC-CHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccccc
Confidence            99964 7777776543 4489999999999999999999999999999999999999999999999999964321     


Q ss_pred             ----------CCc-------eeecccccchHHHHHHHHhCCccc
Q 042772          461 ----------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       461 ----------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                                +|+       ....+|+|++|++++++++|..||
T Consensus       159 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~  202 (292)
T 3o0g_A          159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  202 (292)
T ss_dssp             CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred             cCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCC
Confidence                      111       223448999999999999888885

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.97  E-value=1.3e-30  Score=256.00  Aligned_cols=185  Identities=29%  Similarity=0.447  Sum_probs=161.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ....++|++.+.||+|+||.||+|.+..+++.||+|++.+...........+.+|+.+++.++||||+++++++.+....
T Consensus         5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   84 (279)
T 3fdn_A            5 QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRV   84 (279)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             eeecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEE
Confidence            34567899999999999999999999999999999999765444444456788999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ++||||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++..... 
T Consensus        85 ~lv~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~  162 (279)
T 3fdn_A           85 YLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS  162 (279)
T ss_dssp             EEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred             EEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence            9999999999999999875  3489999999999999999999999999999999999999999999999998854321 


Q ss_pred             ------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|      .....+|+|++|++++++++|..||.
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  208 (279)
T 3fdn_A          163 RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE  208 (279)
T ss_dssp             -----CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCC
Confidence                        11      11234589999999999999999985

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=1.2e-30  Score=271.76  Aligned_cols=176  Identities=26%  Similarity=0.414  Sum_probs=148.6

Q ss_pred             ccCcccc-cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHH-HhCCCCCcceeeEEEEe----C
Q 042772          305 LHHFKPI-KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPTLYASFQT----S  378 (489)
Q Consensus       305 ~~~y~~~-~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~~~~~~----~  378 (489)
                      .++|.+. +.||+|+||+||+|.++.+++.||+|++...        ..+.+|+.++ +..+||||++++++|..    .
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~--------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~  131 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGR  131 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc--------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCC
Confidence            4678877 7899999999999999999999999998643        2455688876 45589999999999876    5


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEEEEecCCc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLS  455 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vKL~DFGlS  455 (489)
                      ..+|+||||++||+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.   ++.+||+|||++
T Consensus       132 ~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a  211 (400)
T 1nxk_A          132 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  211 (400)
T ss_dssp             EEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             cEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccc
Confidence            67999999999999999998865556999999999999999999999999999999999999997   789999999998


Q ss_pred             cccCC--------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSC--------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~--------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +....              .|+.      ....|+|++|++++++++|..||.
T Consensus       212 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  264 (400)
T 1nxk_A          212 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFY  264 (400)
T ss_dssp             EECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCC
Confidence            64321              1221      224489999999999999999984

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.97  E-value=2e-30  Score=259.39  Aligned_cols=181  Identities=20%  Similarity=0.328  Sum_probs=151.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----  379 (489)
                      .++|++++.||+|+||.||+|.++.+++.||+|++....  .....+.+.+|+.+++.++||||++++++|....     
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~   82 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQ   82 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS--TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC--chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhh
Confidence            457999999999999999999999999999999997543  3345677889999999999999999999986543     


Q ss_pred             ----------------------------------------------------eEEEEEecCCCCCHHHHHhhCCC-CCCC
Q 042772          380 ----------------------------------------------------HICLITDFCPGGELFALLDKQPM-KIFR  406 (489)
Q Consensus       380 ----------------------------------------------------~~~lVmEy~~ggsL~~~L~~~~~-~~l~  406 (489)
                                                                          .+++|||||++++|.+++..... ...+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  162 (332)
T 3qd2_B           83 EEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDRE  162 (332)
T ss_dssp             HHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSC
T ss_pred             hhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchh
Confidence                                                                38999999999999999987532 2246


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-------------------------
Q 042772          407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-------------------------  461 (489)
Q Consensus       407 e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-------------------------  461 (489)
                      +..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++......                         
T Consensus       163 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  242 (332)
T 3qd2_B          163 HGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLY  242 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGG
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCc
Confidence            6678999999999999999999999999999999999999999999998754321                         


Q ss_pred             --C------ceeecccccchHHHHHHHHhCCccc
Q 042772          462 --P------QVFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       462 --~------~~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                        |      .....+|+|++|++++++++|..|+
T Consensus       243 ~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~  276 (332)
T 3qd2_B          243 MSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQ  276 (332)
T ss_dssp             SCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCH
T ss_pred             cChHHhcCCCCcchhhHHHHHHHHHHHHHcCCCh
Confidence              1      1122348899999999999887664

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.97  E-value=1.1e-30  Score=278.45  Aligned_cols=185  Identities=27%  Similarity=0.438  Sum_probs=163.3

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|.+.+.||+|+||.||+|.+..+|+.||+|++.+...........+.+|+.+++.++||||+++++++.+...+
T Consensus        12 ~~~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~   91 (476)
T 2y94_A           12 RVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDI   91 (476)
T ss_dssp             CCEETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             CceecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            45567899999999999999999999999999999999876444444567888999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      |+||||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|......
T Consensus        92 ~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~  169 (476)
T 2y94_A           92 FMVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG  169 (476)
T ss_dssp             EEEEECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred             EEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence            9999999999999999765  44899999999999999999999999999999999999999999999999999754311


Q ss_pred             --------------Cce-------eecccccchHHHHHHHHhCCcccC
Q 042772          462 --------------PQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 --------------~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    |+.       ...+|+|++|++++++++|..||.
T Consensus       170 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~  217 (476)
T 2y94_A          170 EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFD  217 (476)
T ss_dssp             CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCC
Confidence                          111       134589999999999999999985

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.97  E-value=3.3e-30  Score=272.47  Aligned_cols=181  Identities=27%  Similarity=0.381  Sum_probs=157.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.++.+|+.||+|.+.+... .....+.+.+|+.+++.++||||+++++++.+....|+|
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv   88 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL-SARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI   88 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC-HHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence            3579999999999999999999999999999999986543 334567788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe---cCCcEEEEecCCccccCCC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld---~~g~vKL~DFGlS~~~~~~  461 (489)
                      |||++||+|.+++....  .+++..+..++.||+.||.|||++||+||||||+|||++   .++.+||+|||+|......
T Consensus        89 ~E~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~  166 (444)
T 3soa_A           89 FDLVTGGELFEDIVARE--YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE  166 (444)
T ss_dssp             ECCCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTT
T ss_pred             EEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCC
Confidence            99999999999998763  489999999999999999999999999999999999998   4678999999999654321


Q ss_pred             ---------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 ---------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ---------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     |      .....+|+|++|++++++++|..||.
T Consensus       167 ~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~  214 (444)
T 3soa_A          167 QQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFW  214 (444)
T ss_dssp             CCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCC
Confidence                           1      12234489999999999999999984

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.97  E-value=4e-30  Score=264.85  Aligned_cols=185  Identities=22%  Similarity=0.316  Sum_probs=158.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcC-------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQG-------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYA  373 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~  373 (489)
                      .+..++|++.+.||+|+||.||+|.+..       ++..||+|+++..  ........+.+|+.+++.+ +||||+++++
T Consensus        77 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~  154 (370)
T 2psq_A           77 EFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD--ATEKDLSDLVSEMEMMKMIGKHKNIINLLG  154 (370)
T ss_dssp             BCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT--CBHHHHHHHHHHHHHHHHSCCCTTBCCEEE
T ss_pred             cccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC--cCHHHHHHHHHHHHHHHHhcCCCCEeeEEE
Confidence            3456789999999999999999999753       4568999999754  2445677899999999999 8999999999


Q ss_pred             EEEeCCeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCE
Q 042772          374 SFQTSTHICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI  439 (489)
Q Consensus       374 ~~~~~~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NI  439 (489)
                      ++.....+|+||||+++|+|.+++....              ...+++..+..++.||+.||.|||++||+||||||+||
T Consensus       155 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NI  234 (370)
T 2psq_A          155 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNV  234 (370)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGE
T ss_pred             EEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhE
Confidence            9999999999999999999999998753              23478999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          440 LLQKDGHVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       440 Lld~~g~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |++.++.+||+|||+|+....                 +|+      ....+|+|++|++++|+++ |..||.
T Consensus       235 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~  307 (370)
T 2psq_A          235 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP  307 (370)
T ss_dssp             EECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             EECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999974321                 111      1123488999999999998 999985

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.97  E-value=3.9e-30  Score=264.05  Aligned_cols=179  Identities=28%  Similarity=0.412  Sum_probs=154.1

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++++.||+|+||.||+|.++.+++.||+|.+.+....    ...+.+|+.+++.++||||+++++++.+...+++
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l   93 (361)
T 3uc3_A           18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI----DENVQREIINHRSLRHPNIVRFKEVILTPTHLAI   93 (361)
T ss_dssp             CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTS----CHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccc----cHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEE
Confidence            346899999999999999999999999999999999765322    2456789999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc--EEEEecCCccccC--
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH--VVLTDFDLSFMTS--  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~--vKL~DFGlS~~~~--  459 (489)
                      ||||+++|+|.+++....  .+++..++.++.|++.||.|||++||+||||||+|||++.++.  +||+|||+|+...  
T Consensus        94 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~  171 (361)
T 3uc3_A           94 IMEYASGGELYERICNAG--RFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH  171 (361)
T ss_dssp             EEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC------
T ss_pred             EEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCcccccccc
Confidence            999999999999997753  4899999999999999999999999999999999999987765  9999999986321  


Q ss_pred             ------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .+|+.       ...+|+|++|++++++++|..||.
T Consensus       172 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  219 (361)
T 3uc3_A          172 SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFE  219 (361)
T ss_dssp             ---------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCC
Confidence                        11111       122599999999999999999995

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=3.9e-30  Score=257.30  Aligned_cols=183  Identities=23%  Similarity=0.298  Sum_probs=158.7

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      .+++|++.+.||+|+||.||+|.+..+++.||+|.+...........+.+.+|+.+++.++||||+++++++......|+
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            45789999999999999999999999999999999977655555566888999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      ||||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....   
T Consensus       112 v~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  189 (309)
T 2h34_A          112 DMRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKL  189 (309)
T ss_dssp             EEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC---------
T ss_pred             EEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcccccccc
Confidence            99999999999999875  3489999999999999999999999999999999999999999999999999854321   


Q ss_pred             -------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+      ....+|+|++|++++++++|..||.
T Consensus       190 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  236 (309)
T 2h34_A          190 TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQ  236 (309)
T ss_dssp             -------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCC
Confidence                         111      1234699999999999999999985

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=6e-30  Score=260.64  Aligned_cols=182  Identities=24%  Similarity=0.387  Sum_probs=158.6

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-----CCCcceeeEEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-----HPFLPTLYASFQ  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-----HpnIv~l~~~~~  376 (489)
                      .+..++|++++.||+|+||.||+|.+..+++.||+|++...    ......+..|..+++.+.     ||||+++++++.
T Consensus        31 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~  106 (360)
T 3llt_A           31 MLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI----KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFM  106 (360)
T ss_dssp             CEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC----HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEE
T ss_pred             eEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc----hhhhhhhHHHHHHHHHhcccCCCCCCeecccceee
Confidence            34557899999999999999999999999999999998643    334456677999999886     999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-------------
Q 042772          377 TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-------------  443 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-------------  443 (489)
                      .....|+||||+ +++|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.             
T Consensus       107 ~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~  185 (360)
T 3llt_A          107 YYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRV  185 (360)
T ss_dssp             ETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECT
T ss_pred             ECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcc
Confidence            999999999999 999999999876666999999999999999999999999999999999999975             


Q ss_pred             ------------CCcEEEEecCCccccCCC------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          444 ------------DGHVVLTDFDLSFMTSCK------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       444 ------------~g~vKL~DFGlS~~~~~~------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  ++.+||+|||+|......            |      .....+|+|++|++++++++|..||.
T Consensus       186 ~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  260 (360)
T 3llt_A          186 TDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFR  260 (360)
T ss_dssp             TTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCC
Confidence                        789999999999743311            1      12234599999999999999999985

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.97  E-value=4.6e-30  Score=251.64  Aligned_cols=183  Identities=29%  Similarity=0.460  Sum_probs=159.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+.+.........+.+.+|+.+++.++||||+++++++......++|
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            35799999999999999999999999999999999765433334457788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++.....    
T Consensus        90 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~  168 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK  168 (278)
T ss_dssp             EECCTTEEHHHHHHTCS-SCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-----
T ss_pred             EecCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCc
Confidence            99999999999998653 4589999999999999999999999999999999999999999999999999864321    


Q ss_pred             -----------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|+.      ...+|+|++|.+++++++|..||.
T Consensus       169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  213 (278)
T 3cok_A          169 HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFD  213 (278)
T ss_dssp             -----------------------CTHHHHHHHHHHHHHHSSCSSC
T ss_pred             ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                       1221      235699999999999999999985

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.97  E-value=2.2e-30  Score=287.28  Aligned_cols=186  Identities=33%  Similarity=0.602  Sum_probs=160.9

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCC
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTST  379 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  379 (489)
                      ..+.+++|++++.||+|+||.||+|.++.+++.||+|++++...........+..|..++..+ .||||+.++++|++..
T Consensus       336 ~~~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~  415 (674)
T 3pfq_A          336 DRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD  415 (674)
T ss_dssp             ----CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSS
T ss_pred             ccccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCC
Confidence            345678999999999999999999999999999999999876544455567788899999887 7999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|+||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+||||+.+|++||+|||+|+...
T Consensus       416 ~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~  493 (674)
T 3pfq_A          416 RLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  493 (674)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred             EEEEEEeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence            999999999999999999875  348999999999999999999999999999999999999999999999999987421


Q ss_pred             C----------C-----Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C----------K-----PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~----------~-----~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .          .     |+      +....|+|++|++++||++|..||.
T Consensus       494 ~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~  543 (674)
T 3pfq_A          494 WDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE  543 (674)
T ss_dssp             CTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCC
Confidence            1          1     11      1223489999999999999999995

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.97  E-value=6.6e-30  Score=254.60  Aligned_cols=181  Identities=23%  Similarity=0.314  Sum_probs=157.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||.||+|.+..+|+.||+|.+.... ......+.+.+|+.+++.++||||+++++++......++|
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESE-DDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV   80 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCC-C-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccc-cchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence            357999999999999999999999999999999986543 2344456788899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++.....    
T Consensus        81 ~e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  158 (311)
T 4agu_A           81 FEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDY  158 (311)
T ss_dssp             EECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             EEeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccc
Confidence            9999999999988765  3489999999999999999999999999999999999999999999999999864331    


Q ss_pred             -----------CC-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KP-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|       .....+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  204 (311)
T 4agu_A          159 YDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWP  204 (311)
T ss_dssp             -------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence                       11       12234589999999999999999985

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.97  E-value=5e-30  Score=257.42  Aligned_cols=190  Identities=25%  Similarity=0.380  Sum_probs=156.7

Q ss_pred             hcCCCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEE
Q 042772          296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASF  375 (489)
Q Consensus       296 ~~~~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  375 (489)
                      ..+....+...+|++.+.||+|+||.||+|.+  ++..||+|++..... .......+.+|+.++++++||||+++++++
T Consensus        27 ~~~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  103 (309)
T 3p86_A           27 MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDF-HAERVNEFLREVAIMKRLRHPNIVLFMGAV  103 (309)
T ss_dssp             -----CBCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCC-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             CCcccccCChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            34445567778999999999999999999987  478999999976533 445567889999999999999999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEecCCcEEEEec
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQPM-KIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQKDGHVVLTDF  452 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~~-~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld~~g~vKL~DF  452 (489)
                      .....+++||||+++|+|.+++..... ..+++..+..++.|++.||.|||++|  |+||||||+|||++.++.+||+||
T Consensus       104 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Df  183 (309)
T 3p86_A          104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDF  183 (309)
T ss_dssp             CSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCC
T ss_pred             EECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCC
Confidence            999999999999999999999987531 23889999999999999999999999  999999999999999999999999


Q ss_pred             CCccccCC---------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          453 DLSFMTSC---------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       453 GlS~~~~~---------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      |+|+....               +|+      ....+|+|++|++++++++|..||.
T Consensus       184 g~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~  240 (309)
T 3p86_A          184 GLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWG  240 (309)
T ss_dssp             C-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTT
T ss_pred             CCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            99863221               111      1234599999999999999999985

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.97  E-value=4.5e-30  Score=252.68  Aligned_cols=184  Identities=22%  Similarity=0.271  Sum_probs=162.6

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..+...+|++.+.||+|+||.||+|.+..+++.||+|.+...    ....+.+.+|+.+++.++||||+++++++.....
T Consensus         8 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   83 (288)
T 3kfa_A            8 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   83 (288)
T ss_dssp             TBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC----STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            455667899999999999999999999999999999999653    3345678889999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      .++||||+++++|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++.....
T Consensus        84 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~  163 (288)
T 3kfa_A           84 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  163 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCS
T ss_pred             EEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccC
Confidence            99999999999999999887666799999999999999999999999999999999999999999999999999975432


Q ss_pred             CC----------------c------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 KP----------------Q------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ~~----------------~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ..                +      ....+|+|++|++++++++ |..||.
T Consensus       164 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~  214 (288)
T 3kfa_A          164 DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP  214 (288)
T ss_dssp             SSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            11                1      1124489999999999998 999985

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.97  E-value=8.6e-30  Score=252.01  Aligned_cols=182  Identities=25%  Similarity=0.403  Sum_probs=162.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+.+.........+.+.+|+.+++.+.||||+++++++......++|
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            46799999999999999999999999999999999877655666778889999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      |||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++......   
T Consensus        94 ~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~  171 (294)
T 2rku_A           94 LELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER  171 (294)
T ss_dssp             EECCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             EecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccCccc
Confidence            9999999999998875  34899999999999999999999999999999999999999999999999998653211   


Q ss_pred             ------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 ------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  |      .....+|+|++|.+++++++|..||.
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  216 (294)
T 2rku_A          172 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFE  216 (294)
T ss_dssp             BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                        1      11224589999999999999999985

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.97  E-value=1.6e-30  Score=268.16  Aligned_cols=185  Identities=20%  Similarity=0.314  Sum_probs=160.2

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..+..++|++.+.||+|+||.||+|.++.+++.||+|.+...  ........+.+|+.+++.++||||+++++++.....
T Consensus       109 ~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  186 (377)
T 3cbl_A          109 WVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET--LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP  186 (377)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT--SCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             cEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc--CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCC
Confidence            355667899999999999999999999999999999998754  234455678889999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+||||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|+....
T Consensus       187 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~  265 (377)
T 3cbl_A          187 IYIVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEAD  265 (377)
T ss_dssp             CEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTT
T ss_pred             cEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCC
Confidence            999999999999999998643 3489999999999999999999999999999999999999999999999999864321


Q ss_pred             -----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 -----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 -----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                       +|+      ....+|+|++|++++|+++ |..||.
T Consensus       266 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~  317 (377)
T 3cbl_A          266 GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYP  317 (377)
T ss_dssp             SEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                             111      1124589999999999997 999985

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.97  E-value=3.1e-30  Score=259.25  Aligned_cols=181  Identities=23%  Similarity=0.344  Sum_probs=142.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||.||+|.++.+++.||+|.+....  .......+.+|+.+++.++||||+++++++...+.+++|
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   81 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS--EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLV   81 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCS--TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc--ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEE
Confidence            457999999999999999999999999999999997543  222345677899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          385 TDFCPGGELFALLDKQP----MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~----~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      |||++ |+|.+++....    ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus        82 ~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  160 (317)
T 2pmi_A           82 FEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGI  160 (317)
T ss_dssp             EECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTS
T ss_pred             EEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCC
Confidence            99997 69999987531    23489999999999999999999999999999999999999999999999999864321


Q ss_pred             ---------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+       ....+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  210 (317)
T 2pmi_A          161 PVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFP  210 (317)
T ss_dssp             CCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                           111       2234589999999999999999985

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.97  E-value=5.1e-30  Score=255.14  Aligned_cols=187  Identities=20%  Similarity=0.285  Sum_probs=160.2

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEE
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYAS  374 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  374 (489)
                      ...+..++|++.+.||+|+||.||+|.+.     .+++.||+|.+...  ......+.+.+|+.+++.++||||++++++
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~   94 (314)
T 2ivs_A           17 KWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN--ASPSELRDLLSEFNVLKQVNHPHVIKLYGA   94 (314)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT--CCHHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             ccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC--CCHHHHHHHHHHHHHHhhCCCCceeeEEEE
Confidence            34566788999999999999999999984     45689999999754  245566788999999999999999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhhCCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeec
Q 042772          375 FQTSTHICLITDFCPGGELFALLDKQPM----------------------KIFREDSARFYAAEVVIGLEYLHCLGIIYR  432 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~~~~----------------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHr  432 (489)
                      +......++||||+++++|.+++.....                      ..+++..+..++.||+.||.|||++||+||
T Consensus        95 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~  174 (314)
T 2ivs_A           95 CSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHR  174 (314)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             EecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999999999987532                      237899999999999999999999999999


Q ss_pred             CCCCCCEEEecCCcEEEEecCCccccCCC-----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          433 DLKPENILLQKDGHVVLTDFDLSFMTSCK-----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       433 DLKP~NILld~~g~vKL~DFGlS~~~~~~-----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||||+|||++.++.+||+|||++......                 |+      ....+|+|++|++++++++ |..||.
T Consensus       175 dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  254 (314)
T 2ivs_A          175 DLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYP  254 (314)
T ss_dssp             CCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999998643211                 11      1224589999999999998 999985

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.97  E-value=3.3e-30  Score=255.13  Aligned_cols=183  Identities=25%  Similarity=0.369  Sum_probs=155.3

Q ss_pred             cccccCcccccccCCCCceEEEEEE----EcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVE----LQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~----~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      .+..++|++++.||+|+||.||+|.    ...+++.||+|.+...   .....+.+.+|+.+++.++||||+++++++..
T Consensus         6 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   82 (295)
T 3ugc_A            6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---TEEHLRDFEREIEILKSLQHDNIVKYKGVCYS   82 (295)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECH
T ss_pred             cCCHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            4556789999999999999999999    4568999999998654   44556788899999999999999999999865


Q ss_pred             C--CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          378 S--THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       378 ~--~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      .  ..+++||||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|
T Consensus        83 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~  161 (295)
T 3ugc_A           83 AGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT  161 (295)
T ss_dssp             HHHTSCEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSC
T ss_pred             CCCCceEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCccc
Confidence            3  56899999999999999998764 34899999999999999999999999999999999999999999999999999


Q ss_pred             cccCCC------------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSCK------------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~~------------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ......                  |+      ....+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~  218 (295)
T 3ugc_A          162 KVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSK  218 (295)
T ss_dssp             C-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             ccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccC
Confidence            754211                  11      1123489999999999999988874

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=6.3e-30  Score=261.37  Aligned_cols=181  Identities=23%  Similarity=0.288  Sum_probs=158.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ..|+.++.||+|+||.||+|.+..+++.||+|.+.............+.+|+.+++.++||||+++++++......++||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            46999999999999999999999999999999998654445556678899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||+. |+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....     
T Consensus       134 e~~~-g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~  211 (348)
T 1u5q_A          134 EYCL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFV  211 (348)
T ss_dssp             ECCS-EEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCC
T ss_pred             ecCC-CCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCCCccc
Confidence            9996 68988886542 4589999999999999999999999999999999999999999999999999864331     


Q ss_pred             ------CCc---------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------KPQ---------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------~~~---------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                            +|+         ....+|+|++|++++++++|..||.
T Consensus       212 gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~  254 (348)
T 1u5q_A          212 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF  254 (348)
T ss_dssp             SCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             CCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                  122         2234599999999999999999985

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.97  E-value=4.9e-30  Score=252.50  Aligned_cols=184  Identities=29%  Similarity=0.431  Sum_probs=161.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|.+.+...........+.+|+.+++.++||||+++++++......+
T Consensus        11 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   90 (284)
T 2vgo_A           11 FTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIY   90 (284)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEE
Confidence            45678999999999999999999999999999999997654333334567888999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      +||||+++++|.+++....  .+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++.....  
T Consensus        91 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~  168 (284)
T 2vgo_A           91 LMLEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR  168 (284)
T ss_dssp             EEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC
T ss_pred             EEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcccc
Confidence            9999999999999998753  489999999999999999999999999999999999999999999999999854321  


Q ss_pred             -----------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|      .....+|+|++|.+++++++|..||.
T Consensus       169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  213 (284)
T 2vgo_A          169 RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFD  213 (284)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCC
Confidence                       11      12234589999999999999999985

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=7.3e-30  Score=263.58  Aligned_cols=180  Identities=25%  Similarity=0.364  Sum_probs=147.7

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCC--e
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTST--H  380 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~--~  380 (489)
                      ..++|++++.||+|+||.||+|.+..+|+.||+|.+.+.. ........+.+|+.+++.+. ||||+++++++...+  .
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~-~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~   85 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAF-QNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD   85 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC---CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccc-cChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence            3568999999999999999999999999999999986543 34556677889999999997 999999999997654  7


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+||||++ ++|.+++...   .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+....
T Consensus        86 ~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  161 (388)
T 3oz6_A           86 VYLVFDYME-TDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVN  161 (388)
T ss_dssp             EEEEEECCS-EEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSS
T ss_pred             EEEEecccC-cCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccccc
Confidence            999999996 6999999873   489999999999999999999999999999999999999999999999999964311


Q ss_pred             ------------------------------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------------------------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------------------------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                                          +|+       .....|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  232 (388)
T 3oz6_A          162 IRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFP  232 (388)
T ss_dssp             CCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Confidence                                                111       2233589999999999999999985

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=5e-30  Score=270.69  Aligned_cols=149  Identities=20%  Similarity=0.317  Sum_probs=125.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----Ce
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----TH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----~~  380 (489)
                      ++|++++.||+|+||+||+|.++.+++.||+|.+.+.. ......+++.+|+.+++.++||||+++++++...     ..
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF-EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh-cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            67999999999999999999999999999999996542 3455677889999999999999999999998443     57


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      +|+||||+ +++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+..
T Consensus       132 ~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  206 (458)
T 3rp9_A          132 LYVVLEIA-DSDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTV  206 (458)
T ss_dssp             EEEEECCC-SEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred             EEEEEecc-ccchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhc
Confidence            99999998 67999999875  44899999999999999999999999999999999999999999999999999753

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.97  E-value=8.2e-30  Score=255.67  Aligned_cols=182  Identities=21%  Similarity=0.338  Sum_probs=153.9

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ...++|++++.||+|+||.||+|.+. +++.||+|.+..... .......+.+|+.+++.++||||+++++++.+...++
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   95 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAE-DEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLT   95 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEE
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccc-cchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEE
Confidence            34578999999999999999999986 489999999965432 3334567888999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      +||||++ ++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|.....  
T Consensus        96 lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~  173 (311)
T 3niz_A           96 LVFEFME-KDLKKVLDENK-TGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV  173 (311)
T ss_dssp             EEEECCS-EEHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred             EEEcCCC-CCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence            9999996 58998887754 3489999999999999999999999999999999999999999999999999864321  


Q ss_pred             -------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+       .....|+|++|++++++++|..||.
T Consensus       174 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  221 (311)
T 3niz_A          174 RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFP  221 (311)
T ss_dssp             C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCC
Confidence                         111       2234489999999999999999985

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.97  E-value=1e-29  Score=257.37  Aligned_cols=182  Identities=25%  Similarity=0.408  Sum_probs=162.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..+|.+.+.||+|+||.||+|.+..+++.||+|++.+...........+.+|+.+++.++||||+++++++.+...+|+|
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            46799999999999999999999999999999999877655666778889999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      |||+++++|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++......   
T Consensus       120 ~e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  197 (335)
T 2owb_A          120 LELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER  197 (335)
T ss_dssp             ECCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             EecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCccc
Confidence            9999999999998875  34899999999999999999999999999999999999999999999999999654211   


Q ss_pred             ------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  |+      .....|+|++|++++++++|..||.
T Consensus       198 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  242 (335)
T 2owb_A          198 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFE  242 (335)
T ss_dssp             BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCC
Confidence                        11      1124589999999999999999985

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.97  E-value=9.5e-30  Score=264.24  Aligned_cols=180  Identities=26%  Similarity=0.384  Sum_probs=156.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||.||+|.++.+++.||+|.+....   ......+.+|+.+++.++||||+++++++.....+++|
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~---~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  126 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY---PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  126 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc---hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence            367999999999999999999999999999999997642   23345788899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec--CCcEEEEecCCccccCCC-
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK--DGHVVLTDFDLSFMTSCK-  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~--~g~vKL~DFGlS~~~~~~-  461 (489)
                      |||+++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.  ++.+||+|||+|...... 
T Consensus       127 ~E~~~gg~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~  205 (387)
T 1kob_A          127 LEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE  205 (387)
T ss_dssp             EECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS
T ss_pred             EEcCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCc
Confidence            99999999999997653 34899999999999999999999999999999999999974  578999999999754321 


Q ss_pred             -------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 -------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   |+      ....+|+|++|++++++++|..||.
T Consensus       206 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~  251 (387)
T 1kob_A          206 IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFA  251 (387)
T ss_dssp             CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCC
Confidence                         11      1234589999999999999999985

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.97  E-value=8.7e-30  Score=253.39  Aligned_cols=175  Identities=25%  Similarity=0.389  Sum_probs=155.3

Q ss_pred             ccCcccc-cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHH-HhCCCCCcceeeEEEEe----C
Q 042772          305 LHHFKPI-KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM-SLLDHPFLPTLYASFQT----S  378 (489)
Q Consensus       305 ~~~y~~~-~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~~~~~~----~  378 (489)
                      .++|.+. +.||+|+||.||+|.+..+++.||+|.+...        ..+.+|+.++ +.++||||+++++++..    .
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~   87 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGR   87 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc--------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCC
Confidence            4578887 7899999999999999999999999998643        2455688887 56689999999999987    6


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEEEEecCCc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLS  455 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vKL~DFGlS  455 (489)
                      ..+++||||+++|+|.+++.......+++..+..++.|++.||.|||++||+||||||+|||++.   ++.+||+|||+|
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a  167 (299)
T 3m2w_A           88 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  167 (299)
T ss_dssp             EEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred             ceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence            78999999999999999999876567999999999999999999999999999999999999998   789999999999


Q ss_pred             cccCCCCceeecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~~~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..... ......+|+|++|++++++++|..||.
T Consensus       168 ~~~~~-~~~~~~~DiwslG~il~el~tg~~pf~  199 (299)
T 3m2w_A          168 KETTG-EKYDKSCDMWSLGVIMYILLCGYPPFY  199 (299)
T ss_dssp             EECTT-CGGGGHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccccc-ccCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            87654 334567799999999999999999984

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.97  E-value=8.3e-30  Score=257.06  Aligned_cols=178  Identities=21%  Similarity=0.323  Sum_probs=154.0

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~  382 (489)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++.....     ...+..|+.+++.+ +||||+++++++......+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~   81 (330)
T 2izr_A            7 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR-----APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNA   81 (330)
T ss_dssp             ETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS-----SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEE
T ss_pred             EcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc-----hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccE
Confidence            34679999999999999999999999999999999875422     23467899999999 8999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc-----EEEEecCCccc
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH-----VVLTDFDLSFM  457 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~-----vKL~DFGlS~~  457 (489)
                      +||||+ +++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.     +||+|||+|..
T Consensus        82 lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~  159 (330)
T 2izr_A           82 MVLELL-GPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE  159 (330)
T ss_dssp             EEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred             EEEEeC-CCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence            999999 999999998752 45899999999999999999999999999999999999998887     99999999974


Q ss_pred             cCCC-----------------Cc-----------eeecccccchHHHHHHHHhCCcccC
Q 042772          458 TSCK-----------------PQ-----------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~~-----------------~~-----------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....                 +.           ....+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~  218 (330)
T 2izr_A          160 YIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQ  218 (330)
T ss_dssp             SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             eecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcc
Confidence            3211                 11           1224489999999999999999995

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.97  E-value=6.4e-30  Score=250.09  Aligned_cols=185  Identities=28%  Similarity=0.429  Sum_probs=162.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||.||+|.+..+++.||+|.+.............+.+|+.+++.++||||+++++++......
T Consensus         7 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   86 (276)
T 2h6d_A            7 RVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDF   86 (276)
T ss_dssp             CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred             cceeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeE
Confidence            45567899999999999999999999999999999999765433444567788999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ++||||+++++|.+++....  .+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++..... 
T Consensus        87 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  164 (276)
T 2h6d_A           87 FMVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG  164 (276)
T ss_dssp             EEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred             EEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence            99999999999999998753  489999999999999999999999999999999999999999999999999865431 


Q ss_pred             -------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+.       ...+|+|++|++++++++|..||.
T Consensus       165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  212 (276)
T 2h6d_A          165 EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFD  212 (276)
T ss_dssp             ------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCC
Confidence                         1222       134589999999999999999985

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.96  E-value=6.9e-30  Score=260.84  Aligned_cols=179  Identities=29%  Similarity=0.425  Sum_probs=147.1

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|++....     ..+.+.+|+.+++.++||||+++++++......+
T Consensus        50 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  124 (349)
T 2w4o_A           50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEIS  124 (349)
T ss_dssp             CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEE
Confidence            34567999999999999999999999999999999997542     2355778999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEEEEecCCccccC
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLSFMTS  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vKL~DFGlS~~~~  459 (489)
                      +||||+++|+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.   ++.+||+|||++....
T Consensus       125 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~  202 (349)
T 2w4o_A          125 LVLELVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE  202 (349)
T ss_dssp             EEECCCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC------
T ss_pred             EEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccC
Confidence            999999999999999775  34899999999999999999999999999999999999975   8899999999986432


Q ss_pred             CC--------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          460 CK--------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~~--------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..              |      .....+|+|++|++++++++|..||.
T Consensus       203 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  251 (349)
T 2w4o_A          203 HQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFY  251 (349)
T ss_dssp             ----------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             cccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCC
Confidence            11              1      12234589999999999999999985

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.96  E-value=4.5e-30  Score=272.91  Aligned_cols=184  Identities=30%  Similarity=0.426  Sum_probs=161.7

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|++.+...........+.+|+.+++.++||||+++++++.....+|
T Consensus        23 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  102 (484)
T 3nyv_A           23 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFY  102 (484)
T ss_dssp             CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             cccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            34467999999999999999999999999999999998765544555678889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE---ecCCcEEEEecCCccccC
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl---d~~g~vKL~DFGlS~~~~  459 (489)
                      +||||+.+|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||+   +.++.+||+|||+|....
T Consensus       103 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  180 (484)
T 3nyv_A          103 LVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE  180 (484)
T ss_dssp             EEECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred             EEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence            999999999999999875  348999999999999999999999999999999999999   567899999999986433


Q ss_pred             CC--------------Cc-----eeecccccchHHHHHHHHhCCcccC
Q 042772          460 CK--------------PQ-----VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~~--------------~~-----~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..              |+     ....+|+|++|++++++++|..||.
T Consensus       181 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~  228 (484)
T 3nyv_A          181 ASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFN  228 (484)
T ss_dssp             CCCSHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCC
Confidence            21              11     1234599999999999999999995

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.96  E-value=1.5e-29  Score=248.56  Aligned_cols=181  Identities=25%  Similarity=0.382  Sum_probs=158.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.++.+++.||+|++..... .......+.+|+.+++.++||||+++++++......++|
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL-SARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   83 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccC-CHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence            4689999999999999999999999999999999976543 444567788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc---EEEEecCCccccCCC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH---VVLTDFDLSFMTSCK  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~---vKL~DFGlS~~~~~~  461 (489)
                      |||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+||+++.++.   +||+|||++......
T Consensus        84 ~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~  161 (284)
T 3kk8_A           84 FDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS  161 (284)
T ss_dssp             ECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSS
T ss_pred             EecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccC
Confidence            9999999999998775  34899999999999999999999999999999999999986655   999999998643321


Q ss_pred             C--------------------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 P--------------------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ~--------------------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                    .....+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  208 (284)
T 3kk8_A          162 EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFW  208 (284)
T ss_dssp             CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCC
Confidence            1                    11234589999999999999999984

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.96  E-value=4.4e-30  Score=253.93  Aligned_cols=179  Identities=21%  Similarity=0.332  Sum_probs=153.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||.||+|.+ .+++.||+|.+..... .......+.+|+.+++.++||||+++++++......++||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKE-DEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF   79 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSG-GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEecccc-ccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEE
Confidence            5799999999999999999998 5789999999965432 2223456778999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      ||+++ +|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|....      
T Consensus        80 e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  157 (288)
T 1ob3_A           80 EHLDQ-DLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKY  157 (288)
T ss_dssp             ECCSE-EHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred             EecCC-CHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCcccccc
Confidence            99965 9999998653 348999999999999999999999999999999999999999999999999985322      


Q ss_pred             ---------CCCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+       ....+|+|++|.+++++++|..||.
T Consensus       158 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  202 (288)
T 1ob3_A          158 THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFP  202 (288)
T ss_dssp             ----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                     1111       2234589999999999999999985

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.96  E-value=6.3e-30  Score=257.90  Aligned_cols=185  Identities=19%  Similarity=0.298  Sum_probs=158.8

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      .+..++|++.+.||+|+||.||+|.+..     +++.||+|.++...  .......+.+|+.+++.++||||+++++++.
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~  120 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVCA  120 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence            3456789999999999999999999973     45899999997542  3445678899999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCC
Q 042772          377 TSTHICLITDFCPGGELFALLDKQP----------------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDL  434 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~----------------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDL  434 (489)
                      .....++||||+++|+|.+++....                      ...+++..++.++.||+.||.|||++||+||||
T Consensus       121 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dl  200 (343)
T 1luf_A          121 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDL  200 (343)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            9999999999999999999998742                      145899999999999999999999999999999


Q ss_pred             CCCCEEEecCCcEEEEecCCccccC-----------------CCCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          435 KPENILLQKDGHVVLTDFDLSFMTS-----------------CKPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       435 KP~NILld~~g~vKL~DFGlS~~~~-----------------~~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||+|||++.++.+||+|||++....                 .+|+      ....+|+|++|++++++++ |..||.
T Consensus       201 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  278 (343)
T 1luf_A          201 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYY  278 (343)
T ss_dssp             SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             CcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCC
Confidence            9999999999999999999985321                 0111      1234589999999999998 999985

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.96  E-value=5.4e-30  Score=262.22  Aligned_cols=181  Identities=19%  Similarity=0.241  Sum_probs=151.3

Q ss_pred             cccccCcccccccCCCCceEEEEE-----EEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC---CCCcceeeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLV-----ELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD---HPFLPTLYA  373 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a-----~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~---HpnIv~l~~  373 (489)
                      .+..++|++.+.||+|+||.||+|     ....+++.||+|.+....      ...+..|..+++.+.   |+||+.+++
T Consensus        61 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~------~~~~~~e~~~~~~l~~~~~~~iv~~~~  134 (365)
T 3e7e_A           61 QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN------PWEFYIGTQLMERLKPSMQHMFMKFYS  134 (365)
T ss_dssp             ECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC------HHHHHHHHHHHHHSCGGGGGGBCCEEE
T ss_pred             EECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC------hhHHHHHHHHHHHhhhhhhhhhhhhhe
Confidence            455678999999999999999999     466789999999986542      245667888888876   999999999


Q ss_pred             EEEeCCeEEEEEecCCCCCHHHHHhhC---CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-------
Q 042772          374 SFQTSTHICLITDFCPGGELFALLDKQ---PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-------  443 (489)
Q Consensus       374 ~~~~~~~~~lVmEy~~ggsL~~~L~~~---~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-------  443 (489)
                      ++...+..|+||||+++|+|.+++...   ....+++..+..++.||+.||.|||++||+||||||+|||++.       
T Consensus       135 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~  214 (365)
T 3e7e_A          135 AHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDD  214 (365)
T ss_dssp             EEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC--
T ss_pred             eeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccc
Confidence            999999999999999999999999752   2355999999999999999999999999999999999999998       


Q ss_pred             ----CCcEEEEecCCccccC-----------------CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          444 ----DGHVVLTDFDLSFMTS-----------------CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       444 ----~g~vKL~DFGlS~~~~-----------------~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          ++.+||+|||+|+...                 .+|+      ....+|+|++|++++++++|..||.
T Consensus       215 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~  286 (365)
T 3e7e_A          215 EDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKV  286 (365)
T ss_dssp             ----CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCE
T ss_pred             cccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccc
Confidence                8999999999995321                 0111      1234489999999999999999874

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=1.4e-29  Score=247.25  Aligned_cols=181  Identities=25%  Similarity=0.375  Sum_probs=156.5

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||.||+|.+.. ++.||+|.+......    .+.+.+|+.++++++||||+++++++.+....
T Consensus         6 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   80 (269)
T 4hcu_A            6 VIDPSELTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPI   80 (269)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred             EeChhhceeeheecCCCccEEEEEEecC-CCeEEEEEecccccC----HHHHHHHHHHHHhCCCCCEeeEEEEEecCCce
Confidence            4566789999999999999999999874 778999999765322    24678899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ++||||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++..... 
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  159 (269)
T 4hcu_A           81 CLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD  159 (269)
T ss_dssp             EEEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred             EEEEEeCCCCcHHHHHHhcC-cccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEecccccccccccc
Confidence            99999999999999997653 3589999999999999999999999999999999999999999999999999864321 


Q ss_pred             ---------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ---------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ---------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                     +|+      ....+|+|++|++++++++ |..||.
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~  209 (269)
T 4hcu_A          160 QYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE  209 (269)
T ss_dssp             HHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             ccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCC
Confidence                           111      1224589999999999998 999985

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.96  E-value=7.3e-30  Score=263.31  Aligned_cols=186  Identities=21%  Similarity=0.303  Sum_probs=153.3

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEc---CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      ...+...+|++.+.||+|+||.||+|.++   .++..||+|.++...  .......+.+|+.++++++||||+++++++.
T Consensus        39 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~  116 (373)
T 2qol_A           39 AKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--TEKQRRDFLGEASIMGQFDHPNIIRLEGVVT  116 (373)
T ss_dssp             SCBCCGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             HhhcCHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe
Confidence            34566788999999999999999999987   457789999997542  3445678899999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          377 TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      ....+++||||+++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++
T Consensus       117 ~~~~~~lv~e~~~~~sL~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~  195 (373)
T 2qol_A          117 KSKPVMIVTEYMENGSLDSFLRKHD-AQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGR  195 (373)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----
T ss_pred             eCCceEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCcccc
Confidence            9999999999999999999998653 358999999999999999999999999999999999999999999999999987


Q ss_pred             ccCCC------------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          457 MTSCK------------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       457 ~~~~~------------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .....                  |+      ....+|+|++|++++++++ |..||.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~  252 (373)
T 2qol_A          196 VLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYW  252 (373)
T ss_dssp             ------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTT
T ss_pred             ccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCC
Confidence            54311                  11      1123489999999999886 999984

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.96  E-value=1.3e-29  Score=248.25  Aligned_cols=179  Identities=32%  Similarity=0.470  Sum_probs=157.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+..++..+|+|.+.+....   ..+.+.+|+.+++.++||||+++++++......++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVE---DVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV   84 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCS---CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccc---hHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence            35799999999999999999999999999999999765332   346788899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE---ecCCcEEEEecCCccccCCC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl---d~~g~vKL~DFGlS~~~~~~  461 (489)
                      |||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+||++   +.++.+||+|||++......
T Consensus        85 ~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~  162 (277)
T 3f3z_A           85 MELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPG  162 (277)
T ss_dssp             EECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTT
T ss_pred             EeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCc
Confidence            9999999999999875  348999999999999999999999999999999999999   78899999999998643211


Q ss_pred             --------------Cc-----eeecccccchHHHHHHHHhCCcccC
Q 042772          462 --------------PQ-----VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 --------------~~-----~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    |+     ....+|+|++|++++++++|..||.
T Consensus       163 ~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  208 (277)
T 3f3z_A          163 KMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFS  208 (277)
T ss_dssp             SCBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cchhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCC
Confidence                          11     1234589999999999999999985

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.96  E-value=1.1e-29  Score=249.61  Aligned_cols=183  Identities=24%  Similarity=0.339  Sum_probs=154.6

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ...+..++|++++.||+|+||.||+|.+. ++..||+|.+......    .+.+.+|+.+++.++||||+++++++....
T Consensus        18 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   92 (283)
T 3gen_A           18 SWEIDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMS----EDEFIEEAKVMMNLSHEKLVQLYGVCTKQR   92 (283)
T ss_dssp             TTBCCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             CccCCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCCC----HHHHHHHHHHHhcCCCCCEeeEEEEEecCC
Confidence            34567789999999999999999999887 4778999999765322    256788999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++||||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++....
T Consensus        93 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~  171 (283)
T 3gen_A           93 PIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL  171 (283)
T ss_dssp             SEEEEECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBC
T ss_pred             CeEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEcccccccccc
Confidence            9999999999999999997642 348999999999999999999999999999999999999999999999999996432


Q ss_pred             ----------------CCCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          460 ----------------CKPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ----------------~~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                      .+|+      ....+|+|++|++++++++ |..||.
T Consensus       172 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~  223 (283)
T 3gen_A          172 DDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE  223 (283)
T ss_dssp             CHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             ccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence                            1111      1124589999999999997 999985

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.96  E-value=1.2e-29  Score=254.95  Aligned_cols=182  Identities=27%  Similarity=0.376  Sum_probs=158.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch---HHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR---NKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .++|++.+.||+|+||.||+|.++.+|+.||+|.+.+......   ...+.+.+|+.+++.++||||+++++++......
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            3579999999999999999999999999999999976543221   1356788999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC----cEEEEecCCccc
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG----HVVLTDFDLSFM  457 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g----~vKL~DFGlS~~  457 (489)
                      ++||||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++    .+||+|||++..
T Consensus        91 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~  168 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEE
T ss_pred             EEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCcccee
Confidence            9999999999999999875  3489999999999999999999999999999999999999888    799999999865


Q ss_pred             cCCC--------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          458 TSCK--------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~~--------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....              |      .....+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  219 (321)
T 2a2a_A          169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFL  219 (321)
T ss_dssp             CCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             cCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCC
Confidence            4321              1      11234589999999999999999985

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.96  E-value=2.2e-29  Score=250.99  Aligned_cols=185  Identities=21%  Similarity=0.342  Sum_probs=155.1

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|.+.............+.+|+.+++.++||||+++++++......++
T Consensus        30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l  109 (310)
T 2wqm_A           30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI  109 (310)
T ss_dssp             SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence            35689999999999999999999999999999999986554556667888999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          384 ITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      ||||+++++|.+++...  ....+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++......
T Consensus       110 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~  189 (310)
T 2wqm_A          110 VLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSK  189 (310)
T ss_dssp             EEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC---------
T ss_pred             EEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCC
Confidence            99999999999998752  2345899999999999999999999999999999999999999999999999998643211


Q ss_pred             ---------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ---------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ---------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     |+      ....+|+|++|++++++++|..||.
T Consensus       190 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  237 (310)
T 2wqm_A          190 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFY  237 (310)
T ss_dssp             ---------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence                           11      1234589999999999999999984

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.96  E-value=1.4e-29  Score=246.99  Aligned_cols=181  Identities=24%  Similarity=0.342  Sum_probs=156.3

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||.||+|.++. +..||+|.+......    ...+.+|+.+++.++||||+++++++......
T Consensus         4 ~l~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   78 (268)
T 3sxs_A            4 ELKREEITLLKELGSGQFGVVKLGKWKG-QYDVAVKMIKEGSMS----EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPI   78 (268)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETT-TEEEEEEEECBTTBC----HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSE
T ss_pred             EechhheeeeeeeccCCCceEEEEEecC-ceeEEEEEeccCCCc----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCce
Confidence            4556789999999999999999998774 778999999764322    25678899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~  461 (489)
                      ++||||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++......
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~  157 (268)
T 3sxs_A           79 YIVTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDD  157 (268)
T ss_dssp             EEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTT
T ss_pred             EEEEEccCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchh
Confidence            99999999999999998753 34899999999999999999999999999999999999999999999999998643211


Q ss_pred             ----------------C------ceeecccccchHHHHHHHHh-CCcccC
Q 042772          462 ----------------P------QVFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       462 ----------------~------~~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                      |      .....+|+|++|++++++++ |..||.
T Consensus       158 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  207 (268)
T 3sxs_A          158 QYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYD  207 (268)
T ss_dssp             CEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             hhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCcc
Confidence                            1      11234589999999999998 999985

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.96  E-value=9.7e-30  Score=258.42  Aligned_cols=185  Identities=23%  Similarity=0.324  Sum_probs=156.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEE-----cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVEL-----QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~-----~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      .+..++|++.+.||+|+||.||+|.+     ..+++.||+|.++..  ........+.+|+.++..+ +||||+++++++
T Consensus        18 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~   95 (359)
T 3vhe_A           18 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG--ATHSEHRALMSELKILIHIGHHLNVVNLLGAC   95 (359)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT--CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCc--CCHHHHHHHHHHHHHHHhhcCCcceeeeeeee
Confidence            44567899999999999999999994     456789999999754  2344567789999999999 799999999998


Q ss_pred             EeCC-eEEEEEecCCCCCHHHHHhhCCC----------------------------------------------------
Q 042772          376 QTST-HICLITDFCPGGELFALLDKQPM----------------------------------------------------  402 (489)
Q Consensus       376 ~~~~-~~~lVmEy~~ggsL~~~L~~~~~----------------------------------------------------  402 (489)
                      .... .+++||||+++|+|.+++.....                                                    
T Consensus        96 ~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (359)
T 3vhe_A           96 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSD  175 (359)
T ss_dssp             CSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------------
T ss_pred             ecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccch
Confidence            8754 59999999999999999987532                                                    


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---------
Q 042772          403 ------------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---------  461 (489)
Q Consensus       403 ------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---------  461 (489)
                                  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|......         
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  255 (359)
T 3vhe_A          176 VEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA  255 (359)
T ss_dssp             --------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--C
T ss_pred             hhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhcccc
Confidence                        12889999999999999999999999999999999999999999999999999744211         


Q ss_pred             --------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          462 --------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       462 --------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                              |+      ....+|+|++|++++++++ |..||.
T Consensus       256 ~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  297 (359)
T 3vhe_A          256 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP  297 (359)
T ss_dssp             EECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred             CCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCC
Confidence                    11      1124489999999999997 999985

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.96  E-value=9.5e-30  Score=272.15  Aligned_cols=185  Identities=22%  Similarity=0.289  Sum_probs=162.2

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ...+...+|++.+.||+|+||.||+|.++.++..||+|.++....    ..+.+.+|+.+++.++||||+++++++....
T Consensus       214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~  289 (495)
T 1opk_A          214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM----EVEEFLKEAAVMKEIKHPNLVQLLGVCTREP  289 (495)
T ss_dssp             CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc----chHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            345667789999999999999999999999999999999975432    3567889999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|+||||+++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+...
T Consensus       290 ~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  369 (495)
T 1opk_A          290 PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMT  369 (495)
T ss_dssp             SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCT
T ss_pred             cEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceecc
Confidence            99999999999999999987655668999999999999999999999999999999999999999999999999997543


Q ss_pred             CC----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          460 CK----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ~~----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ..                |+      ....+|+|++|++++|+++ |..||.
T Consensus       370 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~  421 (495)
T 1opk_A          370 GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP  421 (495)
T ss_dssp             TCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCC
Confidence            11                11      1123489999999999998 999985

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.96  E-value=2.1e-29  Score=254.56  Aligned_cols=174  Identities=26%  Similarity=0.456  Sum_probs=148.8

Q ss_pred             Ccccc---cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEE
Q 042772          307 HFKPI---KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       307 ~y~~~---~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~  382 (489)
                      +|.+.   +.||+|+||.||+|.++.+++.||+|++.+.      ....+.+|+.+++.+. ||||+++++++.+....|
T Consensus         9 ~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~   82 (325)
T 3kn6_A            9 HYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTF   82 (325)
T ss_dssp             HEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             ccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEE
Confidence            45543   7899999999999999999999999999653      2345667999999997 999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC---cEEEEecCCccccC
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---HVVLTDFDLSFMTS  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g---~vKL~DFGlS~~~~  459 (489)
                      +||||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++   .+||+|||++....
T Consensus        83 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~  160 (325)
T 3kn6_A           83 LVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKP  160 (325)
T ss_dssp             EEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECC
T ss_pred             EEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecC
Confidence            999999999999999886  4489999999999999999999999999999999999998766   89999999996432


Q ss_pred             C---------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 C---------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~---------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .               +|+.      ....|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  210 (325)
T 3kn6_A          161 PDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQ  210 (325)
T ss_dssp             C----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCC
Confidence            1               1222      123489999999999999999985

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.96  E-value=1.8e-29  Score=254.49  Aligned_cols=176  Identities=25%  Similarity=0.377  Sum_probs=154.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|...+.||+|+||.||+|.+..+|+.||+|++....   ......+.+|+.+++.++||||+++++++......++|||
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  122 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRK---QQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLME  122 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT---CCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccc---hhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence            4777789999999999999999999999999997543   2334667889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-----  461 (489)
                      |+++++|.+++...   .+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++......     
T Consensus       123 ~~~~~~L~~~l~~~---~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~  199 (321)
T 2c30_A          123 FLQGGALTDIVSQV---RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRK  199 (321)
T ss_dssp             CCCSCBHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBC
T ss_pred             cCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccc
Confidence            99999999998753   4899999999999999999999999999999999999999999999999998643311     


Q ss_pred             ----------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 ----------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ----------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                |      ......|+|++|++++++++|..||.
T Consensus       200 ~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~  242 (321)
T 2c30_A          200 SLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYF  242 (321)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                      1      11234589999999999999999985

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=261.77  Aligned_cols=177  Identities=27%  Similarity=0.410  Sum_probs=148.0

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      +...+.||+|+||.||+|.+..+|+.||+|++....   ......+.+|+.+++.++||||+++++++.....+++||||
T Consensus        91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~  167 (373)
T 2x4f_A           91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG---MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEY  167 (373)
T ss_dssp             EEEEEECC-----CEEEEEETTTCCEEEEEEEECCS---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc---cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeC
Confidence            444678999999999999999999999999997642   24456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE--ecCCcEEEEecCCccccCCC----
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL--QKDGHVVLTDFDLSFMTSCK----  461 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl--d~~g~vKL~DFGlS~~~~~~----  461 (489)
                      +++++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||+  +.++.+||+|||+++.....    
T Consensus       168 ~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~  246 (373)
T 2x4f_A          168 VDGGELFDRIIDES-YNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLK  246 (373)
T ss_dssp             CTTCEEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCC
T ss_pred             CCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccc
Confidence            99999999987653 348999999999999999999999999999999999999  45679999999999754311    


Q ss_pred             ----------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ----------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ----------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                |+      .....|+|++|++++++++|..||.
T Consensus       247 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~  289 (373)
T 2x4f_A          247 VNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFL  289 (373)
T ss_dssp             CCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             cccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCC
Confidence                      11      1124589999999999999999985

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.96  E-value=2.8e-29  Score=250.55  Aligned_cols=178  Identities=28%  Similarity=0.389  Sum_probs=152.6

Q ss_pred             cCcccc-cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEE
Q 042772          306 HHFKPI-KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       306 ~~y~~~-~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~l  383 (489)
                      +.|++. +.||+|+||.||+|.+..+++.||+|++.+..   ......+.+|+.++.++ +||||+++++++.....+|+
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l   88 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQP---GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL   88 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCS---SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCc---chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence            568885 78999999999999999999999999997652   23346778899999885 79999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc---EEEEecCCccccC-
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH---VVLTDFDLSFMTS-  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~---vKL~DFGlS~~~~-  459 (489)
                      ||||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.   +||+|||++.... 
T Consensus        89 v~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  166 (316)
T 2ac3_A           89 VFEKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL  166 (316)
T ss_dssp             EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred             EEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence            99999999999999875  34899999999999999999999999999999999999988776   9999999986432 


Q ss_pred             ---------------------CCCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------------------CKPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------------------~~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                           .+|+.           ...+|+|++|++++++++|..||.
T Consensus       167 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  227 (316)
T 2ac3_A          167 NGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFV  227 (316)
T ss_dssp             ---------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCc
Confidence                                 11221           123589999999999999999985

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=251.37  Aligned_cols=185  Identities=24%  Similarity=0.344  Sum_probs=151.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc--hHHHHHHHHHHHHHHhC---CCCCcceeeEEEEe
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN--RNKVHRACIEREIMSLL---DHPFLPTLYASFQT  377 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~--~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~~  377 (489)
                      +..++|++++.||+|+||+||+|.+..+++.||+|.+.......  ......+.+|+.+++.+   +||||+++++++..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~   85 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT   85 (308)
T ss_dssp             ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred             ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence            34568999999999999999999999999999999997543211  11123445677766655   59999999999987


Q ss_pred             CC-----eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEec
Q 042772          378 ST-----HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF  452 (489)
Q Consensus       378 ~~-----~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DF  452 (489)
                      ..     .+++||||+. ++|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+||
T Consensus        86 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Df  164 (308)
T 3g33_A           86 SRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADF  164 (308)
T ss_dssp             CCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSC
T ss_pred             cCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeC
Confidence            54     5899999996 69999999876666999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCC--------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          453 DLSFMTSCK--------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       453 GlS~~~~~~--------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      |+|......              |+      ....+|+|++|++++++++|..||.
T Consensus       165 g~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  220 (308)
T 3g33_A          165 GLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFC  220 (308)
T ss_dssp             SCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCC
T ss_pred             ccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCC
Confidence            999643311              11      1234589999999999999999984

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.96  E-value=5.8e-30  Score=259.97  Aligned_cols=182  Identities=23%  Similarity=0.352  Sum_probs=157.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch-----HHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR-----NKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~-----~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      .++|++.+.||+|+||.||+|.++.+++.||+|.+.+......     .....+.+|+.+++.++||||+++++++....
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            3579999999999999999999999999999999986543221     13345667999999999999999999999999


Q ss_pred             eEEEEEecCCCC-CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          380 HICLITDFCPGG-ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       380 ~~~lVmEy~~gg-sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..++||||+.+| +|.+++....  .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~  180 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYL  180 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTCC--CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceEC
Confidence            999999999766 9999998763  4899999999999999999999999999999999999999999999999999744


Q ss_pred             CCC--------------Cce-------eecccccchHHHHHHHHhCCcccC
Q 042772          459 SCK--------------PQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~~--------------~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              |+.       ....|+|++|++++++++|..||.
T Consensus       181 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  231 (335)
T 3dls_A          181 ERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFC  231 (335)
T ss_dssp             CTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCS
T ss_pred             CCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchh
Confidence            321              111       223489999999999999999985

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.96  E-value=2.1e-29  Score=269.60  Aligned_cols=182  Identities=30%  Similarity=0.444  Sum_probs=154.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch----------HHHHHHHHHHHHHHhCCCCCcceeeEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR----------NKVHRACIEREIMSLLDHPFLPTLYAS  374 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~----------~~~~~~~~E~~il~~l~HpnIv~l~~~  374 (489)
                      .++|++++.||+|+||+||+|.++.+++.||+|++.+......          ...+.+.+|+.+++.++||||++++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            4679999999999999999999999999999999986543211          235678899999999999999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC---cEEEEe
Q 042772          375 FQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---HVVLTD  451 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g---~vKL~D  451 (489)
                      +.+...+|+|||||++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++   .+||+|
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  192 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVD  192 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECC
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEE
Confidence            99999999999999999999999775  3489999999999999999999999999999999999998776   699999


Q ss_pred             cCCccccCCC--------------Cc-----eeecccccchHHHHHHHHhCCcccC
Q 042772          452 FDLSFMTSCK--------------PQ-----VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       452 FGlS~~~~~~--------------~~-----~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ||+|......              |+     ....+|+|++|++++++++|..||.
T Consensus       193 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~  248 (504)
T 3q5i_A          193 FGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFG  248 (504)
T ss_dssp             CTTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCCEEcCCCCccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCC
Confidence            9999644321              11     1234589999999999999999995

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.96  E-value=1.4e-29  Score=250.10  Aligned_cols=181  Identities=27%  Similarity=0.463  Sum_probs=155.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|.+.+.||+|+||.||+|.+..++..+|+|.+....  .......+.+|+.+++.++||||+++++++......++||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   99 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDR--SQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVM   99 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG--CCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccc--cchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEE
Confidence            57999999999999999999999999999999997653  2233567888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE---ecCCcEEEEecCCccccCC
Q 042772          386 DFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl---d~~g~vKL~DFGlS~~~~~  460 (489)
                      ||+++|+|.+++...  ....+++..+..++.|++.||.|||++||+||||||+||++   +.++.+||+|||++.....
T Consensus       100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~  179 (285)
T 3is5_A          100 ETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKS  179 (285)
T ss_dssp             CCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC---
T ss_pred             EeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCC
Confidence            999999999998643  22458999999999999999999999999999999999999   4567899999999964321


Q ss_pred             C--------------C-----ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 K--------------P-----QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ~--------------~-----~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .              |     .....+|+|++|++++++++|..||.
T Consensus       180 ~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~  226 (285)
T 3is5_A          180 DEHSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFT  226 (285)
T ss_dssp             -------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCC
Confidence            1              1     11234589999999999999999985

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.96  E-value=1.4e-29  Score=258.22  Aligned_cols=183  Identities=23%  Similarity=0.357  Sum_probs=160.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||.||+|.+..+++.||+|.+....  .......+.+|+.+++.++||||+++++++......
T Consensus        29 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  106 (360)
T 3eqc_A           29 ELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEI  106 (360)
T ss_dssp             CCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEE
T ss_pred             ccccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc--CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEE
Confidence            345678999999999999999999999999999999997652  345567888999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCCcEEEEecCCccccC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-  459 (489)
                      ++||||+++++|.+++....  .+++..+..++.|++.||.|||++ ||+||||||+|||++.++.+||+|||++.... 
T Consensus       107 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  184 (360)
T 3eqc_A          107 SICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  184 (360)
T ss_dssp             EEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCccccc
Confidence            99999999999999998753  489999999999999999999996 99999999999999999999999999985221 


Q ss_pred             ------------CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .+|+      ....+|+|++|++++++++|..||.
T Consensus       185 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  231 (360)
T 3eqc_A          185 SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP  231 (360)
T ss_dssp             HC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred             ccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                        1111      2234589999999999999999985

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.96  E-value=2e-29  Score=264.81  Aligned_cols=180  Identities=21%  Similarity=0.288  Sum_probs=154.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----C
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----T  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----~  379 (489)
                      .++|++.+.||+|+||.||+|.++.+++.||+|.+.+.. ......+++.+|+.+++.++||||+++++++...     .
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF-EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT-TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh-cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence            357999999999999999999999999999999997542 3455667889999999999999999999999766     5


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|+||||+. ++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+...
T Consensus       104 ~~~lv~e~~~-~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~  180 (432)
T 3n9x_A          104 ELYIVLEIAD-SDLKKLFKTP--IFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTIN  180 (432)
T ss_dssp             CEEEEEECCS-EEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC-
T ss_pred             eEEEEEecCC-cCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccccc
Confidence            7999999995 6999999875  448999999999999999999999999999999999999999999999999997532


Q ss_pred             C-------------------------------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C-------------------------------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~-------------------------------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                                     +|+       .....|+|++|++++|+++|..||.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          181 SEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             ------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             ccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence            1                                     111       1123488999999999998766653

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.96  E-value=1.6e-29  Score=253.72  Aligned_cols=183  Identities=24%  Similarity=0.271  Sum_probs=157.2

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ....++|++.+.||+|+||.||+|.+. +++.||+|.+...   .....+.+.+|+.+++.++||||+++++++...+..
T Consensus        35 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  110 (321)
T 2qkw_B           35 EEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPE---SSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEM  110 (321)
T ss_dssp             CCCCCCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSC---CSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCC
T ss_pred             HHHHhccCccceeecCCCeeEEEEEEC-CCCEEEEEEeccc---ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeE
Confidence            345578999999999999999999965 5899999988654   234467788999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          382 CLITDFCPGGELFALLDKQP--MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~--~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ++||||+++|+|.+++....  ...+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++....
T Consensus       111 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  190 (321)
T 2qkw_B          111 ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGT  190 (321)
T ss_dssp             EEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECS
T ss_pred             EEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccccccc
Confidence            99999999999999997643  2348999999999999999999999999999999999999999999999999986432


Q ss_pred             C-----------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C-----------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~-----------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                 +|+      ....+|+|++|++++++++|..||.
T Consensus       191 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~  242 (321)
T 2qkw_B          191 ELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIV  242 (321)
T ss_dssp             SSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCS
T ss_pred             cccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCccc
Confidence            1                 111      1234589999999999999999884

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.96  E-value=1.5e-29  Score=249.15  Aligned_cols=181  Identities=19%  Similarity=0.187  Sum_probs=155.2

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCC-------cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAG-------ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASF  375 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg-------~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  375 (489)
                      +..++|++.+.||+|+||.||+|.+..++       ..||+|.+...   .....+.+.+|+.+++.++||||+++++++
T Consensus         5 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   81 (289)
T 4fvq_A            5 IRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA---HRNYSESFFEAASMMSKLSHKHLVLNYGVC   81 (289)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG---GGGGHHHHHHHHHHHHTSCCTTBCCEEEEE
T ss_pred             echhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc---cHHHHHHHHHHHHHHHhCCCCCEeEEEEEE
Confidence            45678999999999999999999998877       47999998654   334457788999999999999999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc--------E
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH--------V  447 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~--------v  447 (489)
                      ......++||||+++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.        +
T Consensus        82 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~  160 (289)
T 4fvq_A           82 VCGDENILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFI  160 (289)
T ss_dssp             CCTTCCEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEE
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCccccccccee
Confidence            99999999999999999999998763 33899999999999999999999999999999999999999887        9


Q ss_pred             EEEecCCccccC-----------CCCc-------eeecccccchHHHHHHHHhCC-ccc
Q 042772          448 VLTDFDLSFMTS-----------CKPQ-------VFYHAHVNGFYFIMYKWLTGY-FTY  487 (489)
Q Consensus       448 KL~DFGlS~~~~-----------~~~~-------~~~~~~v~s~g~~a~e~~~G~-lpY  487 (489)
                      ||+|||++....           .+|+       ....+|+|++|.+++++++|. .||
T Consensus       161 kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~  219 (289)
T 4fvq_A          161 KLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPL  219 (289)
T ss_dssp             EECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             eeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCc
Confidence            999999986432           1222       223458999999999999954 444

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.96  E-value=5.7e-30  Score=265.67  Aligned_cols=183  Identities=26%  Similarity=0.372  Sum_probs=156.5

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC--eE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST--HI  381 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~  381 (489)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++.....  ......+.+|+++++.++||||+++++++....  ..
T Consensus         7 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~   84 (396)
T 4eut_A            7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHK   84 (396)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCE
T ss_pred             CCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCee
Confidence            34689999999999999999999999999999999975432  233566778999999999999999999998765  78


Q ss_pred             EEEEecCCCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE----ecCCcEEEEecCCcc
Q 042772          382 CLITDFCPGGELFALLDKQPM-KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL----QKDGHVVLTDFDLSF  456 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~-~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl----d~~g~vKL~DFGlS~  456 (489)
                      ++||||+++|+|.+++..... ..+++..+..++.||+.||.|||++||+||||||+|||+    +.++.+||+|||+|+
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~  164 (396)
T 4eut_A           85 VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR  164 (396)
T ss_dssp             EEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred             EEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence            999999999999999976422 238999999999999999999999999999999999999    777889999999996


Q ss_pred             ccCC--------------CCcee--------------ecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSC--------------KPQVF--------------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~--------------~~~~~--------------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....              +|+.+              ..+|+|++|++++++++|..||.
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~  224 (396)
T 4eut_A          165 ELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFR  224 (396)
T ss_dssp             ECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEE
T ss_pred             EccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence            4321              12221              23589999999999999999985

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.96  E-value=2.8e-29  Score=248.75  Aligned_cols=183  Identities=25%  Similarity=0.322  Sum_probs=153.1

Q ss_pred             ccccCcccccccCCCCceEEEEEE----EcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVE----LQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~----~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      +...+|++++.||+|+||.||+|.    ...+++.||+|.+....  .......+.+|+.+++.++||||+++++++...
T Consensus        18 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   95 (302)
T 4e5w_A           18 FEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNLYHENIVKYKGICTED   95 (302)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-
T ss_pred             hhhhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc--cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecC
Confidence            344679999999999999999999    45689999999997543  233457788999999999999999999999876


Q ss_pred             --CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          379 --THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       379 --~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                        ..+++||||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus        96 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  174 (302)
T 4e5w_A           96 GGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK  174 (302)
T ss_dssp             --CCEEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             CCceEEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccc
Confidence              67999999999999999996543 348999999999999999999999999999999999999999999999999996


Q ss_pred             ccCCCC------------------c------eeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSCKP------------------Q------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~~~------------------~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ......                  +      ....+|+|++|++++++++|..|+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  230 (302)
T 4e5w_A          175 AIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDS  230 (302)
T ss_dssp             ECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             cccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCc
Confidence            543211                  1      1123489999999999999988763

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.96  E-value=2.3e-29  Score=267.30  Aligned_cols=178  Identities=22%  Similarity=0.370  Sum_probs=151.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------  378 (489)
                      .++|++++.||+|+||+||+|.+..+++.||+|++.+.. ......+++.+|+.+++.++||||+++++++...      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  139 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF  139 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG-GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc-cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence            578999999999999999999999999999999997653 3455667888999999999999999999999654      


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+|+||||+++ +|.+.+...    +++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+..
T Consensus       140 ~~~~lv~E~~~~-~l~~~~~~~----l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~  214 (464)
T 3ttj_A          140 QDVYLVMELMDA-NLCQVIQME----LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  214 (464)
T ss_dssp             CEEEEEEECCSE-EHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC---
T ss_pred             CeEEEEEeCCCC-CHHHHHhhc----CCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeec
Confidence            468999999965 677777542    889999999999999999999999999999999999999999999999999643


Q ss_pred             CCC--------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          459 SCK--------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~~--------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              |      .+....|+|++|++++++++|..||.
T Consensus       215 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~  264 (464)
T 3ttj_A          215 GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP  264 (464)
T ss_dssp             --CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence            311              1      11234599999999999999999985

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.96  E-value=2.6e-29  Score=249.86  Aligned_cols=185  Identities=21%  Similarity=0.298  Sum_probs=158.9

Q ss_pred             cccccCcccccccCCCCceEEEEEEE-----cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVEL-----QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~-----~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      .+..++|++.+.||+|+||.||+|.+     ..+++.||+|.+....  .....+.+.+|+.+++.+ +||||+++++++
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   96 (313)
T 1t46_A           19 EFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA--HLTEREALMSELKVLSYLGNHMNIVNLLGAC   96 (313)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch--hHHHHHHHHHHHHHHhhcccCCCeeeEEEEE
Confidence            45567899999999999999999996     3567899999997552  334567788999999999 899999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCCC----------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCE
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQPM----------------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI  439 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~~----------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NI  439 (489)
                      ......++||||+++|+|.+++.....                ..+++..+..++.|++.||.|||++||+||||||+||
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Ni  176 (313)
T 1t46_A           97 TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI  176 (313)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             ecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceE
Confidence            999999999999999999999987542                2489999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEecCCccccCCCC-----------------c------eeecccccchHHHHHHHHh-CCcccC
Q 042772          440 LLQKDGHVVLTDFDLSFMTSCKP-----------------Q------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       440 Lld~~g~vKL~DFGlS~~~~~~~-----------------~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +++.++.+||+|||++.......                 +      ....+|+|++|.+++++++ |..||.
T Consensus       177 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  249 (313)
T 1t46_A          177 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYP  249 (313)
T ss_dssp             EEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             EEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999987543221                 1      1123488999999999998 999985

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.96  E-value=2.3e-29  Score=267.93  Aligned_cols=180  Identities=31%  Similarity=0.441  Sum_probs=156.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||+||+|.++.+++.||+|++.+.... ......+.+|+.+++.++||||+++++++.....+|+||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK-NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHB-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEeccccc-chHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            5799999999999999999999999999999999765432 223567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe---cCCcEEEEecCCccccCC--
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld---~~g~vKL~DFGlS~~~~~--  460 (489)
                      |||++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++   .++.+||+|||+|.....  
T Consensus       101 e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~  178 (486)
T 3mwu_A          101 ELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT  178 (486)
T ss_dssp             CCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-
T ss_pred             EcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCC
Confidence            999999999998775  3489999999999999999999999999999999999995   456899999999964321  


Q ss_pred             ------------CCce-----eecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQV-----FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~~-----~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+.     ...+|+|++|++++++++|..||.
T Consensus       179 ~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~  223 (486)
T 3mwu_A          179 KMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFY  223 (486)
T ss_dssp             ---CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                        1221     123489999999999999999984

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.96  E-value=3.4e-29  Score=257.28  Aligned_cols=181  Identities=26%  Similarity=0.401  Sum_probs=157.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-----chHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCC
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLL-DHPFLPTLYASFQTST  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-----~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  379 (489)
                      ++|++.+.||+|+||.||+|.++.+|+.||+|++......     .......+.+|+.+++.+ +||||+++++++....
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  173 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSS  173 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSS
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCC
Confidence            5699999999999999999999999999999999764311     122346678899999998 7999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..|+||||++|++|.+++...  ..+++..+..++.||+.||.|||+.||+||||||+|||++.+|.+||+|||++....
T Consensus       174 ~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~  251 (365)
T 2y7j_A          174 FMFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLE  251 (365)
T ss_dssp             EEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcccccC
Confidence            999999999999999999865  348999999999999999999999999999999999999999999999999986432


Q ss_pred             C--------------CCc------------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C--------------KPQ------------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~--------------~~~------------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .              +|+            ....+|+|++|++++++++|..||.
T Consensus       252 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~  306 (365)
T 2y7j_A          252 PGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFW  306 (365)
T ss_dssp             TTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCC
Confidence            1              111            1224699999999999999999984

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.96  E-value=9.6e-30  Score=261.54  Aligned_cols=185  Identities=19%  Similarity=0.254  Sum_probs=154.6

Q ss_pred             cccccCcccccccCCCCceEEEEEEE-----cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVEL-----QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~-----~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      .+..++|++++.||+|+||.||+|.+     ..+++.||+|.++..  ........+.+|+.+++.++||||+++++++.
T Consensus        67 ~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~  144 (367)
T 3l9p_A           67 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSEQDELDFLMEALIISKFNHQNIVRCIGVSL  144 (367)
T ss_dssp             BCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             hcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc--cChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe
Confidence            45567899999999999999999994     456789999998643  23445567888999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC---cEE
Q 042772          377 TSTHICLITDFCPGGELFALLDKQP-----MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---HVV  448 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~-----~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g---~vK  448 (489)
                      .....++||||+++|+|.+++....     ...+++..++.++.||+.||.|||++||+||||||+|||++.+|   .+|
T Consensus       145 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~k  224 (367)
T 3l9p_A          145 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAK  224 (367)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEE
T ss_pred             cCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEE
Confidence            9999999999999999999998642     23489999999999999999999999999999999999999555   599


Q ss_pred             EEecCCccccC-----------------CCCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          449 LTDFDLSFMTS-----------------CKPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       449 L~DFGlS~~~~-----------------~~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |+|||+|+...                 .+|+      .....|+|++|++++++++ |..||.
T Consensus       225 L~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~  288 (367)
T 3l9p_A          225 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYP  288 (367)
T ss_dssp             ECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999986321                 1111      1234489999999999997 999985

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.96  E-value=1.8e-29  Score=246.54  Aligned_cols=180  Identities=24%  Similarity=0.399  Sum_probs=157.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+.....  ......+.+|+.+++.++||||+++++++......++|
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGC--TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccc--hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence            3579999999999999999999999999999999975432  33456788899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      |||+++++|.+++...  ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++....     
T Consensus        84 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~  161 (276)
T 2yex_A           84 LEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE  161 (276)
T ss_dssp             EECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred             EEecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcch
Confidence            9999999999998764  348999999999999999999999999999999999999999999999999986321     


Q ss_pred             ------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .+|+.       ...+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  209 (276)
T 2yex_A          162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD  209 (276)
T ss_dssp             CCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred             hcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCC
Confidence                        11221       124589999999999999999985

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.7e-29  Score=257.39  Aligned_cols=185  Identities=23%  Similarity=0.329  Sum_probs=158.8

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCC-------CcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGA-------GELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYA  373 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~t-------g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~  373 (489)
                      .+..++|++.+.||+|+||.||+|.+..+       +..||+|++...  ........+.+|+++++.+ +||||+++++
T Consensus        65 ~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~  142 (382)
T 3tt0_A           65 ELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD--ATEKDLSDLISEMEMMKMIGKHKNIINLLG  142 (382)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT--CCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc--cCHHHHHHHHHHHHHHHHhcCCchhhhhee
Confidence            45567899999999999999999997643       358999999754  2445567888999999999 8999999999


Q ss_pred             EEEeCCeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCE
Q 042772          374 SFQTSTHICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI  439 (489)
Q Consensus       374 ~~~~~~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NI  439 (489)
                      ++......++||||+++|+|.+++....              ...+++..+..++.||+.||.|||++||+||||||+||
T Consensus       143 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NI  222 (382)
T 3tt0_A          143 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNV  222 (382)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGE
T ss_pred             eeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceE
Confidence            9999999999999999999999998753              23589999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          440 LLQKDGHVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       440 Lld~~g~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |++.++.+||+|||+|+....                 +|+      ....+|+|++|++++++++ |..||.
T Consensus       223 ll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~  295 (382)
T 3tt0_A          223 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  295 (382)
T ss_dssp             EECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             EEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999974321                 111      1124589999999999998 999985

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.96  E-value=4e-29  Score=246.12  Aligned_cols=183  Identities=25%  Similarity=0.360  Sum_probs=155.4

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHH----HHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNK----VHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~----~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|.+..........    .+.+.+|+.+++.++||||+++++++.+.
T Consensus        16 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   95 (287)
T 4f0f_A           16 LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP   95 (287)
T ss_dssp             CCSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT
T ss_pred             hhhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC
Confidence            44578999999999999999999999999999999987544322222    26788999999999999999999998766


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEecCCc-----EEEEe
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQKDGH-----VVLTD  451 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld~~g~-----vKL~D  451 (489)
                      .  ++||||+++|+|.+++.... ..+++..+..++.|++.||.|||++|  |+||||||+|||++.++.     +||+|
T Consensus        96 ~--~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D  172 (287)
T 4f0f_A           96 P--RMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVAD  172 (287)
T ss_dssp             T--EEEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred             C--eEEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence            5  79999999999999987653 45899999999999999999999999  999999999999988776     99999


Q ss_pred             cCCccccC------------CCCcee--------ecccccchHHHHHHHHhCCcccC
Q 042772          452 FDLSFMTS------------CKPQVF--------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       452 FGlS~~~~------------~~~~~~--------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ||+|....            .+|+..        ..+|+|++|++++++++|..||.
T Consensus       173 fg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  229 (287)
T 4f0f_A          173 FGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFD  229 (287)
T ss_dssp             CTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             CCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCc
Confidence            99986322            123322        24589999999999999999985

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.96  E-value=3e-29  Score=250.49  Aligned_cols=184  Identities=27%  Similarity=0.361  Sum_probs=156.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe----
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT----  377 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----  377 (489)
                      .+..++|++.+.||+|+||.||+|.+..+++.||+|.+...   .......+.+|+.+++.++||||+++++++..    
T Consensus        25 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  101 (317)
T 2buj_A           25 IIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH---EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGA  101 (317)
T ss_dssp             EETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETT
T ss_pred             EECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC---CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCC
Confidence            34567899999999999999999999999999999998653   34556778899999999999999999999873    


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          378 STHICLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      ....++||||+++|+|.+++...  ....+++..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus       102 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~  181 (317)
T 2buj_A          102 KHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSM  181 (317)
T ss_dssp             EEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             CceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence            34789999999999999999762  2345899999999999999999999999999999999999999999999999986


Q ss_pred             ccc------------------------CCCCce---------eecccccchHHHHHHHHhCCcccC
Q 042772          456 FMT------------------------SCKPQV---------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~------------------------~~~~~~---------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...                        ..+|+.         ...+|+|++|++++++++|..||.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~  247 (317)
T 2buj_A          182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYD  247 (317)
T ss_dssp             EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTH
T ss_pred             hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChh
Confidence            532                        123332         235599999999999999999983

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.96  E-value=2.2e-29  Score=266.01  Aligned_cols=184  Identities=22%  Similarity=0.392  Sum_probs=158.9

Q ss_pred             CCCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          298 GSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       298 ~~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      ..+..+..++|++.+.||+|+||.||+|.+.  ++.||+|.++...     ..+.+.+|+.++++++||||+++++++..
T Consensus       185 ~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~  257 (450)
T 1k9a_A          185 RSGWALNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVE  257 (450)
T ss_dssp             HTTCBCCGGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCT-----TSHHHHHHHHHHHTCCCTTBCCEEEEEEC
T ss_pred             ccccccChHHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCch-----HHHHHHHHHHHHHhccCCCEEEEEEEEEc
Confidence            4456778889999999999999999999986  6799999997542     34678889999999999999999999876


Q ss_pred             CC-eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          378 ST-HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       378 ~~-~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      .. .+|+||||+++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++
T Consensus       258 ~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  337 (450)
T 1k9a_A          258 EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK  337 (450)
T ss_dssp             TTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcc
Confidence            54 79999999999999999988655557999999999999999999999999999999999999999999999999986


Q ss_pred             ccCCC------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          457 MTSCK------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       457 ~~~~~------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .....            |+      ....+|+|++|.+++|+++ |..||.
T Consensus       338 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~  388 (450)
T 1k9a_A          338 EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  388 (450)
T ss_dssp             ECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             cccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            43211            11      1234589999999999997 999985

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.96  E-value=6.1e-29  Score=249.63  Aligned_cols=174  Identities=20%  Similarity=0.296  Sum_probs=151.8

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEe--CCe
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQT--STH  380 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~--~~~  380 (489)
                      ..++|++++.||+|+||.||+|.+..+++.||+|++....      .+.+.+|+.+++.+. ||||+++++++..  ...
T Consensus        34 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~  107 (330)
T 3nsz_A           34 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKDPVSRT  107 (330)
T ss_dssp             EGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCC
T ss_pred             CCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc------hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCc
Confidence            3578999999999999999999999999999999986431      356788999999997 9999999999987  568


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-cEEEEecCCccccC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFDLSFMTS  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-~vKL~DFGlS~~~~  459 (489)
                      .++||||+++++|.+++..     +++..+..++.||+.||.|||++||+||||||+|||++.++ .+||+|||+|....
T Consensus       108 ~~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~  182 (330)
T 3nsz_A          108 PALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH  182 (330)
T ss_dssp             EEEEEECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred             eEEEEeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcC
Confidence            9999999999999999854     78999999999999999999999999999999999999777 89999999996432


Q ss_pred             C--------------CC-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          460 C--------------KP-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~--------------~~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .              +|       .....+|+|++|++++++++|..||.
T Consensus       183 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~  232 (330)
T 3nsz_A          183 PGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFF  232 (330)
T ss_dssp             TTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred             CCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            1              11       12234589999999999999999983

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.96  E-value=3.8e-29  Score=252.34  Aligned_cols=182  Identities=21%  Similarity=0.265  Sum_probs=156.7

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++++.||+|+||.||+|.+..+++.||+|.+.... ........+.+|+.+++.++||||+++++++......++
T Consensus        23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  101 (331)
T 4aaa_A           23 SMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESD-DDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYL  101 (331)
T ss_dssp             CGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCS-SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCC-CchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEE
Confidence            4678999999999999999999999999999999986553 234445667889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      ||||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....   
T Consensus       102 v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  179 (331)
T 4aaa_A          102 VFEFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE  179 (331)
T ss_dssp             EEECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred             EEecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc
Confidence            99999998888877654  3489999999999999999999999999999999999999999999999999864321   


Q ss_pred             ------------CC-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KP-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|       ......|+|++|++++++++|..||.
T Consensus       180 ~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  226 (331)
T 4aaa_A          180 VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFP  226 (331)
T ss_dssp             ----CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCC
Confidence                        11       12234589999999999999999985

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.96  E-value=3.2e-29  Score=245.96  Aligned_cols=181  Identities=29%  Similarity=0.453  Sum_probs=157.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch---HHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR---NKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+........   ...+.+.+|+.+++.++||||+++++++......+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            579999999999999999999999999999999976543221   13567889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC----cEEEEecCCcccc
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG----HVVLTDFDLSFMT  458 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g----~vKL~DFGlS~~~  458 (489)
                      +||||+++++|.+++...  ..+++..+..++.|++.||.|||++|++||||||+||+++.++    .+||+|||++...
T Consensus        85 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~  162 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKI  162 (283)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEeecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceec
Confidence            999999999999999765  3489999999999999999999999999999999999998877    8999999998653


Q ss_pred             CCC--------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          459 SCK--------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~~--------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              |      .....+|+|++|.+++++++|..||.
T Consensus       163 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  212 (283)
T 3bhy_A          163 EAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFL  212 (283)
T ss_dssp             C--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             cCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCC
Confidence            211              1      11234589999999999999999985

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=8.3e-30  Score=260.69  Aligned_cols=186  Identities=41%  Similarity=0.670  Sum_probs=157.5

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEc---CCCcEEEEEEeeccccc-chHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVML-NRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~---~tg~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      ..+..++|++.+.||+|+||.||+|.+.   .+++.||+|++++.... .......+..|+.+++.+ .||||+++++++
T Consensus        49 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  128 (355)
T 1vzo_A           49 EKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAF  128 (355)
T ss_dssp             CCCCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEE
T ss_pred             ccccccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEE
Confidence            3456678999999999999999999984   57999999999754321 122234566799999999 699999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      .....+++||||+++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus       129 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a  206 (355)
T 1vzo_A          129 QTETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS  206 (355)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred             eeCceEEEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCC
Confidence            9999999999999999999999875  34899999999999999999999999999999999999999999999999998


Q ss_pred             cccC----------------CCCce--------eecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTS----------------CKPQV--------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~----------------~~~~~--------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +...                .+|+.        ....|+|++|++++++++|..||.
T Consensus       207 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~  263 (355)
T 1vzo_A          207 KEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFT  263 (355)
T ss_dssp             EECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             eecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCc
Confidence            6321                11111        134599999999999999999985

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.96  E-value=1.6e-29  Score=255.34  Aligned_cols=182  Identities=20%  Similarity=0.260  Sum_probs=151.9

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ...++|++++.||+|+||.||+|.+..+++.||+|.+..... .......+.+|+.+++.++||||+++++++.....++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHE-EEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH  109 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccc-ccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence            446789999999999999999999999999999999975432 3334566778999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe-----cCCcEEEEecCCccc
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-----KDGHVVLTDFDLSFM  457 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld-----~~g~vKL~DFGlS~~  457 (489)
                      +||||++ |+|.+++....  .+++..+..++.||+.||.|||++||+||||||+|||++     .++.+||+|||+|+.
T Consensus       110 lv~e~~~-~~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~  186 (329)
T 3gbz_A          110 LIFEYAE-NDLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARA  186 (329)
T ss_dssp             EEEECCS-EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHH
T ss_pred             EEEecCC-CCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccc
Confidence            9999996 59999998864  389999999999999999999999999999999999994     455699999999853


Q ss_pred             cC---------------CCCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          458 TS---------------CKPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~---------------~~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..               .+|+       ....+|+|++|++++++++|..||.
T Consensus       187 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~  239 (329)
T 3gbz_A          187 FGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFP  239 (329)
T ss_dssp             HC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence            22               1111       2334589999999999999999985

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.96  E-value=2.2e-29  Score=256.88  Aligned_cols=175  Identities=26%  Similarity=0.413  Sum_probs=149.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~l  383 (489)
                      .++|++.+.||+|+||.||+|.++.+++.||+|++++....       ...|++++.++ +||||+++++++.+...+|+
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-------~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l   93 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD-------PTEEIEILLRYGQHPNIITLKDVYDDGKYVYV   93 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC-------CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC-------hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEE
Confidence            45799999999999999999999999999999999765322       23577788777 79999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC----CcEEEEecCCccccC
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD----GHVVLTDFDLSFMTS  459 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~----g~vKL~DFGlS~~~~  459 (489)
                      ||||++||+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||+..+    +.+||+|||++....
T Consensus        94 v~E~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~  171 (342)
T 2qr7_A           94 VTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR  171 (342)
T ss_dssp             EECCCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred             EEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence            99999999999999875  348999999999999999999999999999999999998533    359999999997432


Q ss_pred             CC---------------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          460 CK---------------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~~---------------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..               |+.      ....|+|++|++++++++|..||.
T Consensus       172 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  221 (342)
T 2qr7_A          172 AENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFA  221 (342)
T ss_dssp             CTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCC
Confidence            11               111      123489999999999999999985

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.96  E-value=2.7e-29  Score=252.87  Aligned_cols=180  Identities=19%  Similarity=0.256  Sum_probs=151.8

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ...+..++|++.+.||+|+||.||+|.+.  ++.||+|++...    .........|+.+++.++||||+++++++....
T Consensus        18 n~~~~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   91 (322)
T 3soc_A           18 NLYFQSMPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQ----DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGT   91 (322)
T ss_dssp             CEEETTEEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC
T ss_pred             ccccchhhchhhheecccCceEEEEEEEC--CCEEEEEEeecC----chHHHHHHHHHHHHhcCCCCCchhhcceeccCC
Confidence            34566788999999999999999999876  789999999654    223344556888899999999999999998743


Q ss_pred             ----eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC----------CCeecCCCCCCEEEecCC
Q 042772          380 ----HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL----------GIIYRDLKPENILLQKDG  445 (489)
Q Consensus       380 ----~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~----------gIvHrDLKP~NILld~~g  445 (489)
                          .+++||||+++|+|.+++...   .+++..+..++.|++.||.|||++          ||+||||||+|||++.++
T Consensus        92 ~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~  168 (322)
T 3soc_A           92 SVDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNL  168 (322)
T ss_dssp             SSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTC
T ss_pred             CCCceEEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCC
Confidence                479999999999999999874   389999999999999999999999          999999999999999999


Q ss_pred             cEEEEecCCccccCC-----------------CCcee-----------ecccccchHHHHHHHHhCCcccC
Q 042772          446 HVVLTDFDLSFMTSC-----------------KPQVF-----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       446 ~vKL~DFGlS~~~~~-----------------~~~~~-----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .+||+|||+|+....                 +|+..           ..+|+|++|++++++++|..||.
T Consensus       169 ~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~  239 (322)
T 3soc_A          169 TACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAAD  239 (322)
T ss_dssp             CEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSS
T ss_pred             eEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCC
Confidence            999999999954321                 12211           12389999999999999998884

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=1e-29  Score=256.83  Aligned_cols=184  Identities=27%  Similarity=0.404  Sum_probs=155.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc--chHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML--NRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.+....  .......+.+|+.+++.++||||+++++++.+....+
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  104 (345)
T 3hko_A           25 QKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYIC  104 (345)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEE
Confidence            46799999999999999999999999999999999765322  3445678899999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhC--------------------------------------CCCCCCHHHHHHHHHHHHHHHHHH
Q 042772          383 LITDFCPGGELFALLDKQ--------------------------------------PMKIFREDSARFYAAEVVIGLEYL  424 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~--------------------------------------~~~~l~e~~~~~i~~qI~~aL~yL  424 (489)
                      +||||+++|+|.+++...                                      ....+++..++.++.||+.||.||
T Consensus       105 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~L  184 (345)
T 3hko_A          105 LVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYL  184 (345)
T ss_dssp             EEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence            999999999999998521                                      011246788889999999999999


Q ss_pred             HHCCCeecCCCCCCEEEecCC--cEEEEecCCccccC-------------------CCCce--------eecccccchHH
Q 042772          425 HCLGIIYRDLKPENILLQKDG--HVVLTDFDLSFMTS-------------------CKPQV--------FYHAHVNGFYF  475 (489)
Q Consensus       425 H~~gIvHrDLKP~NILld~~g--~vKL~DFGlS~~~~-------------------~~~~~--------~~~~~v~s~g~  475 (489)
                      |++||+||||||+|||++.++  .+||+|||++....                   .+|+.        ...+|+|++|+
T Consensus       185 H~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~  264 (345)
T 3hko_A          185 HNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGV  264 (345)
T ss_dssp             HHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHH
T ss_pred             HHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHH
Confidence            999999999999999998776  89999999986421                   11221        12458999999


Q ss_pred             HHHHHHhCCcccC
Q 042772          476 IMYKWLTGYFTYV  488 (489)
Q Consensus       476 ~a~e~~~G~lpY~  488 (489)
                      +++++++|..||.
T Consensus       265 il~el~~g~~pf~  277 (345)
T 3hko_A          265 LLHLLLMGAVPFP  277 (345)
T ss_dssp             HHHHHHHSSCSSC
T ss_pred             HHHHHHHCCCCCC
Confidence            9999999999985

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=2.4e-29  Score=254.32  Aligned_cols=185  Identities=22%  Similarity=0.331  Sum_probs=154.8

Q ss_pred             cccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      .+..++|++.+.||+|+||.||+|.+.     .++..||+|.+....  .......+.+|+.+++.+ .||||+++++++
T Consensus        41 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  118 (344)
T 1rjb_A           41 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLGAC  118 (344)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc--CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            456678999999999999999999973     456789999997542  233456788999999999 899999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCCC---------------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCC
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQPM---------------------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDL  434 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~~---------------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDL  434 (489)
                      ......++||||+++|+|.+++.....                     ..+++..+..++.||+.||.|||++||+||||
T Consensus       119 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Di  198 (344)
T 1rjb_A          119 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDL  198 (344)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             eeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            999999999999999999999987532                     23789999999999999999999999999999


Q ss_pred             CCCCEEEecCCcEEEEecCCccccCCC-----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          435 KPENILLQKDGHVVLTDFDLSFMTSCK-----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       435 KP~NILld~~g~vKL~DFGlS~~~~~~-----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||+|||++.++.+||+|||++......                 |+      ....+|+|++|++++++++ |..||.
T Consensus       199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  276 (344)
T 1rjb_A          199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP  276 (344)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred             ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcc
Confidence            999999999999999999999643211                 11      1123489999999999997 999985

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.96  E-value=2.4e-29  Score=268.48  Aligned_cols=181  Identities=30%  Similarity=0.449  Sum_probs=151.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||+||+|.++.++..||+|++.+.... ......+.+|+.+++.++||||++++++|.....+|+|
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  114 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVS-TSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV  114 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccC-chHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            35799999999999999999999999999999999765432 22346678899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEEEEecCCccccCCC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vKL~DFGlS~~~~~~  461 (489)
                      ||||++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.   ++.+||+|||+|......
T Consensus       115 ~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~  192 (494)
T 3lij_A          115 MECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ  192 (494)
T ss_dssp             EECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTT
T ss_pred             EecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCC
Confidence            9999999999998775  34899999999999999999999999999999999999976   455999999998653311


Q ss_pred             --------------Cc-----eeecccccchHHHHHHHHhCCcccC
Q 042772          462 --------------PQ-----VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 --------------~~-----~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    |+     ....+|+|++|++++++++|..||.
T Consensus       193 ~~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~  238 (494)
T 3lij_A          193 KKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFG  238 (494)
T ss_dssp             BCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCC
Confidence                          11     1234589999999999999999985

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.96  E-value=3.4e-29  Score=246.41  Aligned_cols=184  Identities=23%  Similarity=0.298  Sum_probs=149.3

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCC---CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGA---GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~t---g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      ..+..++|++.+.||+|+||.||+|.+..+   +..||+|.+...  ........+.+|+.+++.++||||+++++++. 
T Consensus        10 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-   86 (281)
T 1mp8_A           10 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-   86 (281)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT--TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-
T ss_pred             eEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc--CCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-
Confidence            345667899999999999999999998653   567999988653  23445677889999999999999999999884 


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      .+..|+||||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++..
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (281)
T 1mp8_A           87 ENPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  165 (281)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             cCccEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccc
Confidence            567899999999999999998753 3489999999999999999999999999999999999999999999999999864


Q ss_pred             cCC----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          458 TSC----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       458 ~~~----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ...                +|+      .....|+|++|++++++++ |..||.
T Consensus       166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~  219 (281)
T 1mp8_A          166 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ  219 (281)
T ss_dssp             -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCC
Confidence            321                111      1123489999999999986 999985

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.96  E-value=6.9e-29  Score=245.39  Aligned_cols=182  Identities=27%  Similarity=0.357  Sum_probs=157.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccc------cchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEe
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM------LNRNKVHRACIEREIMSLLD-HPFLPTLYASFQT  377 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~------~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~  377 (489)
                      .++|++.+.||+|+||.||+|.++.+++.||+|.++....      ........+.+|+.+++++. ||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            4689999999999999999999999999999999975431      11233567788999999995 9999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      ....++||||+++++|.+++...  ..+++..+..++.||+.||.|||++|++|+||||+||+++.++.+||+|||++..
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  173 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ  173 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             CCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhh
Confidence            99999999999999999999875  3489999999999999999999999999999999999999999999999999864


Q ss_pred             cCC--------------CCc------------eeecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC--------------KPQ------------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~--------------~~~------------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              +|+            ....+|+|++|.+++++++|..||.
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  230 (298)
T 1phk_A          174 LDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW  230 (298)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCc
Confidence            321              111            1224589999999999999999984

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.96  E-value=9.1e-30  Score=256.58  Aligned_cols=179  Identities=23%  Similarity=0.338  Sum_probs=151.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||.||+|.+..+++.||+|.+.....  ......+.+|+.+++.++||||+++++++......++||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE--EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF   79 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC--------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc--cccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEe
Confidence            579999999999999999999999999999999865421  111123446999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      ||++ |+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....     
T Consensus        80 e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~  157 (324)
T 3mtl_A           80 EYLD-KDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTY  157 (324)
T ss_dssp             ECCS-EEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred             cccc-cCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCcccc
Confidence            9996 69999998764 3589999999999999999999999999999999999999999999999999864321     


Q ss_pred             ----------CC-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KP-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|       .....+|+|++|++++++++|..||.
T Consensus       158 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  202 (324)
T 3mtl_A          158 DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFP  202 (324)
T ss_dssp             -----CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                      11       12234589999999999999999985

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.96  E-value=2.4e-29  Score=263.34  Aligned_cols=181  Identities=27%  Similarity=0.451  Sum_probs=152.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-----chHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-----~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++.+....     .......+.+|+.++++++||||+++++++.. .
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~  212 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-E  212 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-S
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-C
Confidence            35799999999999999999999999999999999865432     12223357789999999999999999998854 4


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC---cEEEEecCCcc
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---HVVLTDFDLSF  456 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g---~vKL~DFGlS~  456 (489)
                      ..|+||||+++|+|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++   .+||+|||+|+
T Consensus       213 ~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~  290 (419)
T 3i6u_A          213 DYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  290 (419)
T ss_dssp             EEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTT
T ss_pred             ceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccce
Confidence            689999999999999998765  4489999999999999999999999999999999999997544   59999999996


Q ss_pred             ccC--------------CCCcee---------ecccccchHHHHHHHHhCCcccC
Q 042772          457 MTS--------------CKPQVF---------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~--------------~~~~~~---------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              .+|+..         ...|+|++|++++++++|..||.
T Consensus       291 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~  345 (419)
T 3i6u_A          291 ILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFS  345 (419)
T ss_dssp             SCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence            432              223332         24589999999999999999985

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.96  E-value=4.6e-29  Score=249.99  Aligned_cols=180  Identities=23%  Similarity=0.285  Sum_probs=148.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHh-CCCCCcceeeEEEEeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL-LDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      .++|++++.||+|+||+||+|.+..+++.||+|++....... ........|+..+.. ..||||++++++|.....+|+
T Consensus        56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~l  134 (311)
T 3p1a_A           56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGP-KDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYL  134 (311)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSH-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccCh-HHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEE
Confidence            467999999999999999999999999999999986543332 333444455555544 589999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      ||||+ +++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....   
T Consensus       135 v~e~~-~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~  212 (311)
T 3p1a_A          135 QTELC-GPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA  212 (311)
T ss_dssp             EEECC-CCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred             EEecc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCCC
Confidence            99999 779999987753 4589999999999999999999999999999999999999999999999999864321   


Q ss_pred             -----------CCce-----eecccccchHHHHHHHHhCCccc
Q 042772          461 -----------KPQV-----FYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       461 -----------~~~~-----~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                                 +|+.     ...+|+|++|++++++++|..|+
T Consensus       213 ~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~  255 (311)
T 3p1a_A          213 GEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELP  255 (311)
T ss_dssp             --CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                       1221     12348999999999999995543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.96  E-value=4.3e-29  Score=247.74  Aligned_cols=183  Identities=23%  Similarity=0.346  Sum_probs=154.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-chHHHHHHHHHHHHHHhCCCCCcceeeEEEE--eCCeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-NRNKVHRACIEREIMSLLDHPFLPTLYASFQ--TSTHI  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~--~~~~~  381 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++...... .......+.+|+.+++.++||||+++++++.  .....
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            36899999999999999999999999999999999765322 1344677889999999999999999999984  45689


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ++||||++++ |.+++.......+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++..... 
T Consensus        84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~  162 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPF  162 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT
T ss_pred             EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCcc
Confidence            9999999765 88888876666799999999999999999999999999999999999999999999999999865321 


Q ss_pred             ----------------CCce--------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------------KPQV--------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------------~~~~--------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                      +|+.        ...+|+|++|.+++++++|..||.
T Consensus       163 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  214 (305)
T 2wtk_C          163 AADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFE  214 (305)
T ss_dssp             CSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCC
Confidence                            1111        124599999999999999999985

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=3.3e-29  Score=257.68  Aligned_cols=179  Identities=25%  Similarity=0.391  Sum_probs=150.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----  379 (489)
                      .++|++++.||+|+||.||+|.+..+|+.||+|.+.... ......+++.+|+.+++.++||||+++++++....     
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc-cCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence            467999999999999999999999999999999986543 34455678889999999999999999999997653     


Q ss_pred             -eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          380 -HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       380 -~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                       .+|+||||+ +++|.+++...   .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  178 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA  178 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeeccccc
Confidence             469999999 88999999873   4899999999999999999999999999999999999999999999999999753


Q ss_pred             CC------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..            +|+       .....|+|++|++++++++|..||.
T Consensus       179 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~  227 (367)
T 1cm8_A          179 DSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFK  227 (367)
T ss_dssp             CSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCC
Confidence            21            122       2234589999999999999999985

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.1e-29  Score=250.51  Aligned_cols=182  Identities=22%  Similarity=0.341  Sum_probs=156.1

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEe----
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQT----  377 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~----  377 (489)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|++....    .....+.+|+.+++.+ +||||+++++++..    
T Consensus        21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   96 (326)
T 2x7f_A           21 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG----DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP   96 (326)
T ss_dssp             CCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred             CCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc----ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence            34578999999999999999999999999999999997542    2235677899999998 79999999999987    


Q ss_pred             --CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          378 --STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       378 --~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                        ...+++||||+++|+|.+++.......+++..+..++.||+.||.|||++||+|+||||+|||++.++.+||+|||++
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~  176 (326)
T 2x7f_A           97 GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS  176 (326)
T ss_dssp             CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTT
T ss_pred             cccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCc
Confidence              468999999999999999998765556899999999999999999999999999999999999999999999999998


Q ss_pred             cccCC---------------CCc-----------eeecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSC---------------KPQ-----------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~---------------~~~-----------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .....               +|+           .....|+|++|++++++++|..||.
T Consensus       177 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  235 (326)
T 2x7f_A          177 AQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLC  235 (326)
T ss_dssp             C-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTT
T ss_pred             eecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCC
Confidence            64321               111           1223589999999999999999985

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.96  E-value=3.1e-29  Score=253.00  Aligned_cols=182  Identities=25%  Similarity=0.338  Sum_probs=148.2

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEE----EEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELY----AMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~v----AiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      +..++|++.+.||+|+||.||+|.+..+++.+    |+|.+...  ........+.+|+.+++.++||||+++++++...
T Consensus        12 l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   89 (327)
T 3poz_A           12 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA--TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS   89 (327)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS
T ss_pred             cCHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc--cCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC
Confidence            44578999999999999999999998877755    66666432  2334457788999999999999999999999876


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      . .++|+||+++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+..
T Consensus        90 ~-~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~  167 (327)
T 3poz_A           90 T-VQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             S-EEEEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred             C-eEEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEc
Confidence            4 789999999999999998754 34899999999999999999999999999999999999999999999999998643


Q ss_pred             CCC-----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SCK-----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~~-----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ...                 |+      ....+|+|++|++++++++ |..||.
T Consensus       168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  221 (327)
T 3poz_A          168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD  221 (327)
T ss_dssp             TTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCcc
Confidence            211                 11      1123489999999999998 999985

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.96  E-value=1.4e-29  Score=255.07  Aligned_cols=183  Identities=20%  Similarity=0.313  Sum_probs=151.9

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcE----EEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGEL----YAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~----vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      .+..++|++++.||+|+||.||+|.+..+++.    ||+|.+....  .......+.+|+.+++.++||||+++++++. 
T Consensus         9 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-   85 (325)
T 3kex_A            9 IFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS--GRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-   85 (325)
T ss_dssp             BCCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT--SCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-
T ss_pred             hcCHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc--cHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-
Confidence            34567899999999999999999999888876    6666664321  2222345667999999999999999999886 


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      ....++||||+++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+.
T Consensus        86 ~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~  164 (325)
T 3kex_A           86 GSSLQLVTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADL  164 (325)
T ss_dssp             BSSEEEEEECCTTCBSHHHHHSSG-GGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGG
T ss_pred             CCccEEEEEeCCCCCHHHHHHHcc-ccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccc
Confidence            456999999999999999998652 3588999999999999999999999999999999999999999999999999975


Q ss_pred             cCCC-----------------C------ceeecccccchHHHHHHHHh-CCcccC
Q 042772          458 TSCK-----------------P------QVFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       458 ~~~~-----------------~------~~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ....                 |      .....+|+|++|++++++++ |..||.
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  219 (325)
T 3kex_A          165 LPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYA  219 (325)
T ss_dssp             SCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCcc
Confidence            4211                 1      11124489999999999999 999985

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.96  E-value=4.3e-29  Score=244.17  Aligned_cols=182  Identities=20%  Similarity=0.321  Sum_probs=153.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~l  383 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+..... .......+.+|+.++..+ +||||+++++++......++
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLA-GSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCT-TSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccc-ccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            3579999999999999999999999999999999976533 233456778899999988 89999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-----------------
Q 042772          384 ITDFCPGGELFALLDKQP--MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-----------------  444 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~--~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-----------------  444 (489)
                      ||||+++++|.+++....  ...+++..+..++.||+.||.|||++||+||||||+|||++.+                 
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~  168 (289)
T 1x8b_A           89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWAS  168 (289)
T ss_dssp             EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-------------------
T ss_pred             EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccC
Confidence            999999999999997641  1448999999999999999999999999999999999999844                 


Q ss_pred             --CcEEEEecCCccccCCC-----------Cc-------eeecccccchHHHHHHHHhCCccc
Q 042772          445 --GHVVLTDFDLSFMTSCK-----------PQ-------VFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       445 --g~vKL~DFGlS~~~~~~-----------~~-------~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                        ..+||+|||++......           |+       ....+|+|++|.+++++++|..++
T Consensus       169 ~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~  231 (289)
T 1x8b_A          169 NKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLP  231 (289)
T ss_dssp             -CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             CceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCC
Confidence              47999999998754321           11       113458899999999998887654

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.96  E-value=9.4e-29  Score=244.06  Aligned_cols=181  Identities=24%  Similarity=0.342  Sum_probs=156.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe----CCe
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT----STH  380 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----~~~  380 (489)
                      ...|++.+.||+|+||.||+|.+..++..||+|.+..... .....+.+.+|+.+++.++||||+++++++..    ...
T Consensus        25 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~  103 (290)
T 1t4h_A           25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL-TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKC  103 (290)
T ss_dssp             SCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEE
T ss_pred             ceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhh-CHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCce
Confidence            3468999999999999999999999999999999976543 34557788999999999999999999999875    356


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEe-cCCcEEEEecCCccc
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQ-KDGHVVLTDFDLSFM  457 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld-~~g~vKL~DFGlS~~  457 (489)
                      +++||||+++++|.+++...  ..+++..+..++.||+.||.|||++|  |+||||||+|||++ .++.+||+|||++..
T Consensus       104 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~  181 (290)
T 1t4h_A          104 IVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEEEEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence            99999999999999999875  34899999999999999999999999  99999999999997 789999999999864


Q ss_pred             cCC-------------CCce-----eecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC-------------KPQV-----FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~-------------~~~~-----~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...             +|+.     ...+|+|++|++++++++|..||.
T Consensus       182 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  230 (290)
T 1t4h_A          182 KRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYS  230 (290)
T ss_dssp             CCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ccccccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCC
Confidence            321             1111     124489999999999999999985

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.96  E-value=1.2e-29  Score=250.90  Aligned_cols=185  Identities=26%  Similarity=0.394  Sum_probs=141.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||.||+|.+..+++.||+|.+....  .......+.+|+.+++.++||||+++++++......
T Consensus        11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   88 (303)
T 2vwi_A           11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEK--CQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDEL   88 (303)
T ss_dssp             --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC------------------CCCCCCCTTBCCEEEEEESSSCE
T ss_pred             ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhh--cchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCc
Confidence            345678999999999999999999999899999999886542  223456778899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhh------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          382 CLITDFCPGGELFALLDK------QPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~------~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      ++||||+++++|.+++..      .....+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  168 (303)
T 2vwi_A           89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVS  168 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred             EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence            999999999999999974      12345899999999999999999999999999999999999999999999999988


Q ss_pred             cccCC--------------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSC--------------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~--------------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .....                    +|+       ....+|+|++|++++++++|..||.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  228 (303)
T 2vwi_A          169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYH  228 (303)
T ss_dssp             HHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence            53321                    111       1234589999999999999999985

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.96  E-value=3.1e-29  Score=265.02  Aligned_cols=183  Identities=24%  Similarity=0.311  Sum_probs=156.5

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ...+..++|++.+.||+|+||.||+|.+.. +..||+|.++...    ...+.+.+|+.+++.++||||+++++++. ..
T Consensus       182 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~-~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~  255 (454)
T 1qcf_A          182 AWEIPRESLKLEKKLGAGQFGEVWMATYNK-HTKVAVKTMKPGS----MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KE  255 (454)
T ss_dssp             CSBCCGGGEEEEEEEECCSSEEEEEEEETT-TEEEEEEEECTTS----BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SS
T ss_pred             ceeechHHeEEEEEcccCCceEEEEEEECC-ccEEEEEEecCCC----ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CC
Confidence            346677889999999999999999999874 6789999997643    23567889999999999999999999886 56


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+|+||||+++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+...
T Consensus       256 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~  335 (454)
T 1qcf_A          256 PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIE  335 (454)
T ss_dssp             SCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBC
T ss_pred             ccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcC
Confidence            79999999999999999986433347899999999999999999999999999999999999999999999999997532


Q ss_pred             C----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          460 C----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ~----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .                +|+      ....+|+|++|++++|+++ |..||.
T Consensus       336 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~  387 (454)
T 1qcf_A          336 DNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP  387 (454)
T ss_dssp             CHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCC
Confidence            1                111      1124489999999999998 999985

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.96  E-value=4.6e-29  Score=250.53  Aligned_cols=180  Identities=28%  Similarity=0.450  Sum_probs=150.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-----chHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-----~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+.+....     .......+.+|+.+++.++||||+++++++.... 
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   88 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED-   88 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence            5799999999999999999999999999999999764321     1223345778999999999999999999987655 


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc---EEEEecCCccc
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH---VVLTDFDLSFM  457 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~---vKL~DFGlS~~  457 (489)
                      .|+||||+++++|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.   +||+|||++..
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~  166 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKI  166 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEE
T ss_pred             eEEEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCcccee
Confidence            89999999999999999765  45899999999999999999999999999999999999987664   99999999865


Q ss_pred             cCC--------------CCce---------eecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC--------------KPQV---------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~--------------~~~~---------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              +|+.         ....|+|++|++++++++|..||.
T Consensus       167 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  220 (322)
T 2ycf_A          167 LGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFS  220 (322)
T ss_dssp             CCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence            321              1222         234599999999999999999985

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.96  E-value=2.9e-29  Score=251.55  Aligned_cols=186  Identities=25%  Similarity=0.324  Sum_probs=144.0

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCc---EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGE---LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~---~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      .+..++|++.+.||+|+||.||+|.+..++.   .||+|.+..... .....+.+.+|+.+++.++||||+++++++...
T Consensus        19 ~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   97 (323)
T 3qup_A           19 LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADII-ASSDIEEFLREAACMKEFDHPHVAKLVGVSLRS   97 (323)
T ss_dssp             BCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC-------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC
T ss_pred             ccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEeccccc-CHHHHHHHHHHHHHHHHCCCCceehhhceeecc
Confidence            4456789999999999999999999887665   899999976533 334567889999999999999999999999876


Q ss_pred             CeE------EEEEecCCCCCHHHHHhhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEE
Q 042772          379 THI------CLITDFCPGGELFALLDKQP----MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV  448 (489)
Q Consensus       379 ~~~------~lVmEy~~ggsL~~~L~~~~----~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vK  448 (489)
                      ...      ++||||+++|+|.+++....    ...+++..+..++.|++.||.|||++||+||||||+|||++.++.+|
T Consensus        98 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~k  177 (323)
T 3qup_A           98 RAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVC  177 (323)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEE
T ss_pred             ccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEE
Confidence            654      99999999999999996532    12489999999999999999999999999999999999999999999


Q ss_pred             EEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          449 LTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       449 L~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |+|||+|+....                 +|+      ....+|+|++|++++++++ |..||.
T Consensus       178 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~  241 (323)
T 3qup_A          178 VADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYA  241 (323)
T ss_dssp             ECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             EeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCcc
Confidence            999999964321                 111      1224489999999999999 999985

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.96  E-value=2.9e-30  Score=265.78  Aligned_cols=183  Identities=14%  Similarity=0.103  Sum_probs=148.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHH---HHhCCCCCcceee-------EE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI---MSLLDHPFLPTLY-------AS  374 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~i---l~~l~HpnIv~l~-------~~  374 (489)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|++.+.........+.+.+|+.+   ++.++||||++++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            4679999999999999999999999999999999986555555667888899954   5555899999998       66


Q ss_pred             EEeCC-----------------eEEEEEecCCCCCHHHHHhhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHCCCeec
Q 042772          375 FQTST-----------------HICLITDFCPGGELFALLDKQPM-----KIFREDSARFYAAEVVIGLEYLHCLGIIYR  432 (489)
Q Consensus       375 ~~~~~-----------------~~~lVmEy~~ggsL~~~L~~~~~-----~~l~e~~~~~i~~qI~~aL~yLH~~gIvHr  432 (489)
                      +...+                 ..|+||||+ +|+|.+++.....     ..+++..+..++.||+.||.|||++||+||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHr  230 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT  230 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            65543                 389999999 6899999986421     112347788899999999999999999999


Q ss_pred             CCCCCCEEEecCCcEEEEecCCccccCC-----------CC-----------------ceeecccccchHHHHHHHHhCC
Q 042772          433 DLKPENILLQKDGHVVLTDFDLSFMTSC-----------KP-----------------QVFYHAHVNGFYFIMYKWLTGY  484 (489)
Q Consensus       433 DLKP~NILld~~g~vKL~DFGlS~~~~~-----------~~-----------------~~~~~~~v~s~g~~a~e~~~G~  484 (489)
                      ||||+|||++.++.+||+|||+|+....           +|                 .....+|+|++|++++++++|.
T Consensus       231 Dikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~  310 (377)
T 3byv_A          231 YLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD  310 (377)
T ss_dssp             CCCGGGEEECTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCHHHEEEcCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCC
Confidence            9999999999999999999999974321           11                 1223459999999999999999


Q ss_pred             cccC
Q 042772          485 FTYV  488 (489)
Q Consensus       485 lpY~  488 (489)
                      .||.
T Consensus       311 ~Pf~  314 (377)
T 3byv_A          311 LPIT  314 (377)
T ss_dssp             CCC-
T ss_pred             CCCc
Confidence            9985

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.96  E-value=4e-29  Score=255.85  Aligned_cols=182  Identities=19%  Similarity=0.243  Sum_probs=146.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCC-----CcEEEEEEeecccccchHHH--------HHHHHHHHHHHhCCCCCccee
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGA-----GELYAMKAMEKSVMLNRNKV--------HRACIEREIMSLLDHPFLPTL  371 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~t-----g~~vAiK~i~~~~~~~~~~~--------~~~~~E~~il~~l~HpnIv~l  371 (489)
                      .++|++.+.||+|+||.||+|.+..+     ++.||+|++...........        .....|...++.++||||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            45899999999999999999998764     58899999876432111111        123345556777889999999


Q ss_pred             eEEEEeC----CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe--cCC
Q 042772          372 YASFQTS----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ--KDG  445 (489)
Q Consensus       372 ~~~~~~~----~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld--~~g  445 (489)
                      ++++...    ...|+||||+ +++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++  .++
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~  191 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA-KRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPD  191 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTT
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCC
Confidence            9998764    5689999999 999999998753 4589999999999999999999999999999999999999  889


Q ss_pred             cEEEEecCCccccCC----------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          446 HVVLTDFDLSFMTSC----------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       446 ~vKL~DFGlS~~~~~----------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .+||+|||+|+....                      +|+      ....+|+|++|++++++++|..||.
T Consensus       192 ~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~  262 (364)
T 3op5_A          192 QVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWE  262 (364)
T ss_dssp             CEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred             eEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            999999999954210                      111      1123489999999999999999995

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.96  E-value=9.1e-29  Score=249.85  Aligned_cols=185  Identities=21%  Similarity=0.306  Sum_probs=156.3

Q ss_pred             cccccCcccccccCCCCceEEEEEEEc-------CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQ-------GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYA  373 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~-------~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~  373 (489)
                      .+..++|++.+.||+|+||.||+|.+.       .++..||+|.+....  .......+.+|+.+++.+ +||||+++++
T Consensus        31 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  108 (334)
T 2pvf_A           31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLG  108 (334)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC--cHHHHHHHHHHHHHHHHhhcCCCEeeEEE
Confidence            345578999999999999999999986       356789999997542  345567888999999999 8999999999


Q ss_pred             EEEeCCeEEEEEecCCCCCHHHHHhhCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCE
Q 042772          374 SFQTSTHICLITDFCPGGELFALLDKQPM--------------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI  439 (489)
Q Consensus       374 ~~~~~~~~~lVmEy~~ggsL~~~L~~~~~--------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NI  439 (489)
                      ++.....+++||||+++|+|.+++.....              ..+++..+..++.||+.||.|||++||+||||||+||
T Consensus       109 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NI  188 (334)
T 2pvf_A          109 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNV  188 (334)
T ss_dssp             EECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGE
T ss_pred             EEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceE
Confidence            99999999999999999999999987531              2488999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEecCCccccCCC-----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          440 LLQKDGHVVLTDFDLSFMTSCK-----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       440 Lld~~g~vKL~DFGlS~~~~~~-----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |++.++.+||+|||++......                 |+      ....+|+|++|++++++++ |..||.
T Consensus       189 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  261 (334)
T 2pvf_A          189 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP  261 (334)
T ss_dssp             EECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             EEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcC
Confidence            9999999999999998643211                 11      1123489999999999998 999985

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.96  E-value=4.7e-29  Score=242.32  Aligned_cols=184  Identities=18%  Similarity=0.317  Sum_probs=159.2

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC--C
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS--T  379 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~  379 (489)
                      .+..++|++.+.||+|+||.||+|.+.  ++.||+|++..... .....+.+.+|+.+++.++||||+++++++...  .
T Consensus         6 ~i~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   82 (271)
T 3kmu_A            6 GIDFKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDW-STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAP   82 (271)
T ss_dssp             CCCGGGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTC-CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSS
T ss_pred             CCCHHHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEeccccc-CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCC
Confidence            456678999999999999999999986  88999999976532 344567788999999999999999999999877  7


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      ..++||||+++|+|.+++.......+++..+..++.|++.||.|||++|  ++||||||+||+++.++.++|+|||++..
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~  162 (271)
T 3kmu_A           83 HPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFS  162 (271)
T ss_dssp             SCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT
T ss_pred             CeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceee
Confidence            8999999999999999999876556899999999999999999999999  99999999999999999999998888753


Q ss_pred             cCC----------CCcee------e---cccccchHHHHHHHHhCCcccC
Q 042772          458 TSC----------KPQVF------Y---HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~----------~~~~~------~---~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...          +|+..      .   .+|+|++|.+++++++|..||.
T Consensus       163 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~  212 (271)
T 3kmu_A          163 FQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFA  212 (271)
T ss_dssp             TSCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTT
T ss_pred             ecccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            321          12211      1   3699999999999999999985

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.96  E-value=6.7e-29  Score=252.28  Aligned_cols=181  Identities=25%  Similarity=0.301  Sum_probs=153.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-------  377 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------  377 (489)
                      .++|++++.||+|+||.||+|.+..+|+.||+|.+..... .......+.+|+.+++.++||||+++++++..       
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   94 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSC-SSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccc-cccchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence            4689999999999999999999999999999999865532 22234566789999999999999999999987       


Q ss_pred             -CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          378 -STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       378 -~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                       .+.+|+||||++ ++|.+.+.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|.
T Consensus        95 ~~~~~~lv~e~~~-~~l~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~  172 (351)
T 3mi9_A           95 CKGSIYLVFDFCE-HDLAGLLSNVL-VKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR  172 (351)
T ss_dssp             --CEEEEEEECCS-EEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CCceEEEEEeccC-CCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcc
Confidence             346899999996 58888887653 348999999999999999999999999999999999999999999999999986


Q ss_pred             ccC-------------------CCCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTS-------------------CKPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~-------------------~~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...                   .+|+       ....+|+|++|++++++++|..||.
T Consensus       173 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~  230 (351)
T 3mi9_A          173 AFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQ  230 (351)
T ss_dssp             ECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCC
Confidence            432                   0111       1234589999999999999999985

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.96  E-value=1e-28  Score=244.18  Aligned_cols=184  Identities=20%  Similarity=0.287  Sum_probs=154.8

Q ss_pred             ccccccCccccc-ccCCCCceEEEEEEE--cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          301 EKIGLHHFKPIK-PLGCGDTGSVHLVEL--QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       301 ~~i~~~~y~~~~-~LG~G~fG~Vy~a~~--~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      ..+..++|++.+ .||+|+||.||+|.+  ..+++.||+|.+.... ......+.+.+|+.+++.++||||+++++++ .
T Consensus        11 ~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~   88 (291)
T 1xbb_A           11 VYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGIC-E   88 (291)
T ss_dssp             CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-E
T ss_pred             eeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccc-cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-C
Confidence            345567899998 999999999999955  5667899999997543 2344467888999999999999999999998 5


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      ....++||||+++++|.+++....  .+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++..
T Consensus        89 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  166 (291)
T 1xbb_A           89 AESWMLVMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKA  166 (291)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHhCc--CCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCccee
Confidence            667899999999999999998753  489999999999999999999999999999999999999999999999999865


Q ss_pred             cCCC------------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          458 TSCK------------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       458 ~~~~------------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ....                  |+      ....+|+|++|++++++++ |..||.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  222 (291)
T 1xbb_A          167 LRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYR  222 (291)
T ss_dssp             CCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             eccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCC
Confidence            4321                  11      1124589999999999998 999985

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.96  E-value=1.1e-28  Score=245.03  Aligned_cols=178  Identities=23%  Similarity=0.348  Sum_probs=157.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ..|++++.||+|+||.||+|.+..+++.||+|.+.....  ......+.+|+.+++.++||||+++++++......++||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   99 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM   99 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTC--STTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEeccccc--HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence            569999999999999999999999999999999976532  334677889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK----  461 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~----  461 (489)
                      ||+++++|.+++..   ..+++..+..++.|++.||.|||++||+|+||||+||+++.++.+||+|||++......    
T Consensus       100 e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  176 (303)
T 3a7i_A          100 EYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR  176 (303)
T ss_dssp             ECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCB
T ss_pred             EeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCcccccc
Confidence            99999999999975   34899999999999999999999999999999999999999999999999998643211    


Q ss_pred             -----------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 -----------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -----------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 |      .....+|+|++|++++++++|..||.
T Consensus       177 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  220 (303)
T 3a7i_A          177 NTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHS  220 (303)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             CccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCC
Confidence                       1      11234589999999999999999985

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.96  E-value=6.8e-29  Score=246.99  Aligned_cols=179  Identities=30%  Similarity=0.482  Sum_probs=154.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|.+.....   .....+.+|+.+++.++||||+++++++......++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA---FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV   84 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc---cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence            3579999999999999999999999999999999975432   2235677899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE---ecCCcEEEEecCCccccCC-
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl---d~~g~vKL~DFGlS~~~~~-  460 (489)
                      |||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+||++   +.++.+||+|||++..... 
T Consensus        85 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~  162 (304)
T 2jam_A           85 MQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG  162 (304)
T ss_dssp             ECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB
T ss_pred             EEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC
Confidence            9999999999999765  348999999999999999999999999999999999999   7889999999999864321 


Q ss_pred             ------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+.      ....|+|++|++++++++|..||.
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  208 (304)
T 2jam_A          163 IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFY  208 (304)
T ss_dssp             TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                        2222      234589999999999999999985

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=6.9e-29  Score=241.27  Aligned_cols=181  Identities=26%  Similarity=0.382  Sum_probs=156.5

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+..++|++.+.||+|+||.||+|.+. +++.||+|.+......    .+.+.+|+.+++.++||||+++++++......
T Consensus         4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   78 (267)
T 3t9t_A            4 VIDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPI   78 (267)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSC
T ss_pred             EEchhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCe
Confidence            455678999999999999999999987 5788999999765322    25678899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ++||||+++++|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++..... 
T Consensus        79 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~  157 (267)
T 3t9t_A           79 CLVTEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD  157 (267)
T ss_dssp             EEEECCCTTCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred             EEEEeCCCCCcHHHHHhhCc-ccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccc
Confidence            99999999999999998753 3489999999999999999999999999999999999999999999999999864321 


Q ss_pred             ---------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ---------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ---------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                     +|+      ....+|+|++|.+++++++ |..||.
T Consensus       158 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  207 (267)
T 3t9t_A          158 QYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE  207 (267)
T ss_dssp             HHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCC
Confidence                           111      1124589999999999999 899985

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.96  E-value=5.7e-29  Score=243.70  Aligned_cols=176  Identities=23%  Similarity=0.326  Sum_probs=151.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-------  377 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------  377 (489)
                      ..+|++++.||+|+||.||+|.+..+++.||+|.+....       ..+.+|+.+++.++||||+++++++..       
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPET   82 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccc
Confidence            357999999999999999999999999999999997542       235579999999999999999998864       


Q ss_pred             ---------CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEE
Q 042772          378 ---------STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVV  448 (489)
Q Consensus       378 ---------~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vK  448 (489)
                               ...+++||||+++++|.+++.......+++..+..++.|++.||.|||++||+|+||||+||+++.++.+|
T Consensus        83 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~k  162 (284)
T 2a19_B           83 SSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVK  162 (284)
T ss_dssp             ------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEE
T ss_pred             ccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEE
Confidence                     44589999999999999999876445689999999999999999999999999999999999999999999


Q ss_pred             EEecCCccccCCC--------------Cc------eeecccccchHHHHHHHHhCCccc
Q 042772          449 LTDFDLSFMTSCK--------------PQ------VFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       449 L~DFGlS~~~~~~--------------~~------~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      |+|||++......              |+      ....+|+|++|++++++++|..||
T Consensus       163 l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~  221 (284)
T 2a19_B          163 IGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTA  221 (284)
T ss_dssp             ECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSH
T ss_pred             ECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcc
Confidence            9999998654321              11      123458899999999999998876

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.96  E-value=4.5e-29  Score=251.10  Aligned_cols=184  Identities=22%  Similarity=0.345  Sum_probs=155.5

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEE--EEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELY--AMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTST  379 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~v--AiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  379 (489)
                      +..++|++.+.||+|+||.||+|.+..++..+  |+|.+...  ........+.+|+.+++.+ +||||+++++++....
T Consensus        22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~--~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~   99 (327)
T 1fvr_A           22 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   99 (327)
T ss_dssp             CCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT
T ss_pred             ccHHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccc--cchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCC
Confidence            45678999999999999999999999888865  99988643  2334456788899999999 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC
Q 042772          380 HICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g  445 (489)
                      .+|+||||+++|+|.+++....              ...+++..++.++.||+.||.|||++||+||||||+|||++.++
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~  179 (327)
T 1fvr_A          100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  179 (327)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG
T ss_pred             ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCC
Confidence            9999999999999999998653              23589999999999999999999999999999999999999999


Q ss_pred             cEEEEecCCccccC--------------CCCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          446 HVVLTDFDLSFMTS--------------CKPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       446 ~vKL~DFGlS~~~~--------------~~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .+||+|||++....              .+|+      ....+|+|++|++++++++ |..||.
T Consensus       180 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~  243 (327)
T 1fvr_A          180 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC  243 (327)
T ss_dssp             CEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             eEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCC
Confidence            99999999986321              1111      1234589999999999997 999985

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=6.9e-29  Score=256.01  Aligned_cols=178  Identities=23%  Similarity=0.321  Sum_probs=146.8

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-----
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-----  377 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----  377 (489)
                      ...++|++.+.||+|+||.||+|.+..+|+.||+|.+......       ..+|+.+++.++||||++++++|..     
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~-------~~~E~~il~~l~hpnIv~l~~~~~~~~~~~   76 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY-------KNRELDIMKVLDHVNIIKLVDYFYTTGDEE   76 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS-------CCHHHHHHTTCCCTTBCCEEEEEEEC----
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch-------HHHHHHHHHHcCCCCccchhheeeecCccc
Confidence            3456899999999999999999999999999999998654221       2259999999999999999999844     


Q ss_pred             ---------------------------------CCeEEEEEecCCCCCHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHH
Q 042772          378 ---------------------------------STHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLE  422 (489)
Q Consensus       378 ---------------------------------~~~~~lVmEy~~ggsL~~~L~~--~~~~~l~e~~~~~i~~qI~~aL~  422 (489)
                                                       ...+++||||++ |+|.+.+..  .....+++..+..++.||+.||.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~  155 (383)
T 3eb0_A           77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVG  155 (383)
T ss_dssp             ---------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence                                             335899999997 588877764  22355899999999999999999


Q ss_pred             HHHHCCCeecCCCCCCEEEe-cCCcEEEEecCCccccCC--------------CCc-------eeecccccchHHHHHHH
Q 042772          423 YLHCLGIIYRDLKPENILLQ-KDGHVVLTDFDLSFMTSC--------------KPQ-------VFYHAHVNGFYFIMYKW  480 (489)
Q Consensus       423 yLH~~gIvHrDLKP~NILld-~~g~vKL~DFGlS~~~~~--------------~~~-------~~~~~~v~s~g~~a~e~  480 (489)
                      |||++||+||||||+|||++ .++.+||+|||+|.....              +|+       .....|+|++|++++++
T Consensus       156 ~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el  235 (383)
T 3eb0_A          156 FIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGEL  235 (383)
T ss_dssp             HHHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHH
T ss_pred             HHHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHH
Confidence            99999999999999999998 689999999999964321              111       22344899999999999


Q ss_pred             HhCCcccC
Q 042772          481 LTGYFTYV  488 (489)
Q Consensus       481 ~~G~lpY~  488 (489)
                      ++|..||.
T Consensus       236 l~g~~pf~  243 (383)
T 3eb0_A          236 ILGKPLFS  243 (383)
T ss_dssp             HHSSCSSC
T ss_pred             HhCCCCCC
Confidence            99999985

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.96  E-value=7.8e-29  Score=248.88  Aligned_cols=181  Identities=25%  Similarity=0.370  Sum_probs=154.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEc----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQ----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      +....|++++.||+|+||.||++.+.    .+++.||+|++...  ........+.+|+.+++.++||||+++++++...
T Consensus        28 ~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  105 (318)
T 3lxp_A           28 FHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD--AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDA  105 (318)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             ecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc--cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecC
Confidence            33334599999999999999888653    47899999999765  2445567889999999999999999999999874


Q ss_pred             --CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          379 --THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       379 --~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                        ..+++||||+++|+|.+++...   .+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus       106 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  182 (318)
T 3lxp_A          106 GAASLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAK  182 (318)
T ss_dssp             TTTEEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             CCceEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccc
Confidence              6899999999999999999874   38999999999999999999999999999999999999999999999999997


Q ss_pred             ccCCCC------------------c------eeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSCKP------------------Q------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~~~------------------~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ......                  +      ....+|+|++|++++++++|..||.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~  238 (318)
T 3lxp_A          183 AVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQ  238 (318)
T ss_dssp             ECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             cccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCccc
Confidence            543211                  1      1123489999999999999999884

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.96  E-value=1.3e-28  Score=253.14  Aligned_cols=179  Identities=22%  Similarity=0.359  Sum_probs=152.2

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC----
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST----  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----  379 (489)
                      ..++|++++.||+|+||.||+|.+..+++.||+|.+.... ........+.+|+.+++.++||||+++++++....    
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~  101 (371)
T 2xrw_A           23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE  101 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTT-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTT
T ss_pred             hhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEecccc-CChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccc
Confidence            3578999999999999999999999999999999997643 24455677889999999999999999999997654    


Q ss_pred             --eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          380 --HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       380 --~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                        .+|+||||++ ++|.+++..    .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+.
T Consensus       102 ~~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  176 (371)
T 2xrw_A          102 FQDVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  176 (371)
T ss_dssp             CCEEEEEEECCS-EEHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred             ccceEEEEEcCC-CCHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence              7899999996 589988864    278999999999999999999999999999999999999999999999999864


Q ss_pred             cCC--------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC--------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~--------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              +|+      ....+|+|++|++++++++|..||.
T Consensus       177 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~  227 (371)
T 2xrw_A          177 AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP  227 (371)
T ss_dssp             -------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence            321              111      1234599999999999999999985

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=250.09  Aligned_cols=180  Identities=21%  Similarity=0.285  Sum_probs=154.0

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC--CCcceeeEEEEeCCe
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH--PFLPTLYASFQTSTH  380 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H--pnIv~l~~~~~~~~~  380 (489)
                      +...+|++++.||+|+||.||+|.+. +++.||+|.+..... .......+.+|+.+++.+.|  |||+++++++.....
T Consensus         6 ~~~~~y~i~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~   83 (343)
T 3dbq_A            6 VKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY   83 (343)
T ss_dssp             SSSCEEEEEEEESCCSSEEEEEEECT-TSCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             eecCEEEEEEEEecCCCeEEEEEEeC-CCCEEEEEEeecccc-chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCE
Confidence            34567999999999999999999885 589999999976532 44556788899999999976  999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+|||+ .+++|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++ ++.+||+|||+|+....
T Consensus        84 ~~lv~e~-~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~  159 (343)
T 3dbq_A           84 IYMVMEC-GNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP  159 (343)
T ss_dssp             EEEEECC-CSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--
T ss_pred             EEEEEeC-CCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCc
Confidence            9999995 588999999886  3489999999999999999999999999999999999997 68899999999964321


Q ss_pred             -----------------CCcee-----------------ecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------------KPQVF-----------------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------------~~~~~-----------------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                       +|+..                 ..+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~  221 (343)
T 3dbq_A          160 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQ  221 (343)
T ss_dssp             ----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcch
Confidence                             12211                 23589999999999999999985

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.96  E-value=9.1e-29  Score=248.85  Aligned_cols=183  Identities=24%  Similarity=0.377  Sum_probs=156.8

Q ss_pred             cccccCcccccccCCCCceEEEEEEE----cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE-
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVEL----QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ-  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~----~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-  376 (489)
                      -+..++|++++.||+|+||.||+|.+    ..+++.||+|.+...   .....+.+.+|+.+++.++||||+++++++. 
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   95 (327)
T 3lxl_A           19 IFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS---GPDQQRDFQREIQILKALHSDFIVKYRGVSYG   95 (327)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC
T ss_pred             hhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC---CHHHHHHHHHHHHHHHhcCCCceeEEEEEEec
Confidence            34567899999999999999999994    567899999999754   3455677889999999999999999999886 


Q ss_pred             -eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          377 -TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       377 -~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                       ....+++||||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~  174 (327)
T 3lxl_A           96 PGRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA  174 (327)
T ss_dssp             SSSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGC
T ss_pred             CCCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccc
Confidence             4567999999999999999998743 24899999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC------------------c------eeecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSCKP------------------Q------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~~~------------------~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .......                  +      .....|+|++|++++++++|..||.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~  231 (327)
T 3lxl_A          175 KLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSC  231 (327)
T ss_dssp             EECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             eecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCc
Confidence            7543211                  1      1224489999999999999999874

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.96  E-value=5.6e-29  Score=242.73  Aligned_cols=181  Identities=25%  Similarity=0.384  Sum_probs=146.8

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc-hHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      +..++|++.+.||+|+||.||+|.+.  ++.||+|++....... ....+.+.+|+.+++.++||||+++++++......
T Consensus         4 ~~~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (271)
T 3dtc_A            4 IDFAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNL   81 (271)
T ss_dssp             CCTTSEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--C
T ss_pred             cchhheeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCce
Confidence            45678999999999999999999975  7899999987543222 23356788999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCCCCEEEec--------CCcEEEE
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG---IIYRDLKPENILLQK--------DGHVVLT  450 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g---IvHrDLKP~NILld~--------~g~vKL~  450 (489)
                      ++||||+++++|.+++..   ..+++..+..++.|++.||.|||++|   |+||||||+|||++.        ++.+||+
T Consensus        82 ~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~  158 (271)
T 3dtc_A           82 CLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKIT  158 (271)
T ss_dssp             EEEEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEEC
T ss_pred             EEEEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEc
Confidence            999999999999999864   34899999999999999999999999   899999999999986        7789999


Q ss_pred             ecCCccccCC-------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          451 DFDLSFMTSC-------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       451 DFGlS~~~~~-------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      |||++.....             +|+      ....+|+|++|++++++++|..||.
T Consensus       159 Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  215 (271)
T 3dtc_A          159 DFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFR  215 (271)
T ss_dssp             CCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTT
T ss_pred             cCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            9999864321             111      1234589999999999999999985

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.96  E-value=4.6e-29  Score=251.16  Aligned_cols=185  Identities=21%  Similarity=0.342  Sum_probs=157.8

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCc-----EEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGE-----LYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~-----~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      .+..++|++.+.||+|+||.||+|.+..+++     .||+|.+....  .......+.+|+.+++.+ +||||+++++++
T Consensus        42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  119 (333)
T 2i1m_A           42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA--HADEKEALMSELKIMSHLGQHENIVNLLGAC  119 (333)
T ss_dssp             BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc--ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            4556789999999999999999999987664     79999997542  344567788999999999 899999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQP------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK  443 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~  443 (489)
                      .....+++||||+++|+|.+++....            ...+++..+..++.|++.||.|||++||+||||||+|||++.
T Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~  199 (333)
T 2i1m_A          120 THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTN  199 (333)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEG
T ss_pred             ecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECC
Confidence            99999999999999999999997531            235799999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCccccCCC-----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          444 DGHVVLTDFDLSFMTSCK-----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       444 ~g~vKL~DFGlS~~~~~~-----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ++.+||+|||++......                 |+      ....+|+|++|++++++++ |..||.
T Consensus       200 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  268 (333)
T 2i1m_A          200 GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYP  268 (333)
T ss_dssp             GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred             CCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCc
Confidence            999999999999743211                 11      1123488999999999997 988885

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=2.2e-28  Score=241.35  Aligned_cols=183  Identities=22%  Similarity=0.342  Sum_probs=155.2

Q ss_pred             cccccCccccc-ccCCCCceEEEEEEEc--CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIK-PLGCGDTGSVHLVELQ--GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~-~LG~G~fG~Vy~a~~~--~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      .+..++|.+.+ .||+|+||.||+|.+.  .++..||+|.+...  ......+.+.+|+.+++.++||||+++++++ ..
T Consensus         5 ~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~   81 (287)
T 1u59_A            5 FLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG--TEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QA   81 (287)
T ss_dssp             BCCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ES
T ss_pred             cccHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCc--cchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cC
Confidence            44567788887 9999999999999864  46889999999764  2445677889999999999999999999998 45


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ...++||||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++...
T Consensus        82 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~  160 (287)
T 1u59_A           82 EALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKAL  160 (287)
T ss_dssp             SSEEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             CCcEEEEEeCCCCCHHHHHHhCC-ccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeee
Confidence            57999999999999999997543 45899999999999999999999999999999999999999999999999998754


Q ss_pred             CCC------------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SCK------------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~~------------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ...                  |+      ....+|+|++|++++++++ |..||.
T Consensus       161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  215 (287)
T 1u59_A          161 GADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYK  215 (287)
T ss_dssp             TTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             ccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcc
Confidence            311                  11      1123588999999999998 999985

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.96  E-value=4.9e-29  Score=249.81  Aligned_cols=186  Identities=23%  Similarity=0.302  Sum_probs=154.7

Q ss_pred             CCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEE-
Q 042772          299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQ-  376 (489)
Q Consensus       299 ~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~-  376 (489)
                      ....+...+|++.+.||+|+||.||+|.+..+++.||+|.+...   .......+.+|+.+++.+. ||||+++++++. 
T Consensus        21 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~   97 (337)
T 3ll6_A           21 QTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN---EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASI   97 (337)
T ss_dssp             CEEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES---SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEE
T ss_pred             ceeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC---chHHHHHHHHHHHHHHHhccCCChhhccccccc
Confidence            33455567899999999999999999999999999999998554   3445567888999999995 999999999984 


Q ss_pred             -------eCCeEEEEEecCCCCCHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEecCCc
Q 042772          377 -------TSTHICLITDFCPGGELFALLDKQ-PMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQKDGH  446 (489)
Q Consensus       377 -------~~~~~~lVmEy~~ggsL~~~L~~~-~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld~~g~  446 (489)
                             ....++++|||+. |+|.+++... ....+++..+..++.||+.||.|||++|  |+||||||+|||++.++.
T Consensus        98 ~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~  176 (337)
T 3ll6_A           98 GKEESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGT  176 (337)
T ss_dssp             CTTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSC
T ss_pred             cccccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCC
Confidence                   3446899999995 7999988752 2345899999999999999999999999  999999999999999999


Q ss_pred             EEEEecCCccccC---------------------------CCCcee---------ecccccchHHHHHHHHhCCcccC
Q 042772          447 VVLTDFDLSFMTS---------------------------CKPQVF---------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       447 vKL~DFGlS~~~~---------------------------~~~~~~---------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +||+|||++....                           .+|+..         ..+|+|++|++++++++|..||.
T Consensus       177 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~  254 (337)
T 3ll6_A          177 IKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFE  254 (337)
T ss_dssp             EEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred             EEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCc
Confidence            9999999986432                           123222         24589999999999999999985

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.96  E-value=5.9e-29  Score=249.62  Aligned_cols=184  Identities=26%  Similarity=0.319  Sum_probs=154.6

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ....++|++.+.||+|+||.||+|.+. +++.||+|.+......  .....+.+|+.+++.++||||+++++++......
T Consensus        26 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  102 (326)
T 3uim_A           26 QVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  102 (326)
T ss_dssp             HTTTTSSCSTTEEECCSSSEEEEECCS-SSCCEEEEECCC-------CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCC
T ss_pred             HHHhhccccceeEecCCCcEEEEEEec-CCCEEEEEEeccccCc--hHHHHHHHHHHHHHhccCCCccceEEEEecCCce
Confidence            344578999999999999999999854 5899999999764321  1223578899999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          382 CLITDFCPGGELFALLDKQP--MKIFREDSARFYAAEVVIGLEYLHCL---GIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~--~~~l~e~~~~~i~~qI~~aL~yLH~~---gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      ++||||+++|+|.+++....  ...+++..+..++.|++.||.|||++   ||+||||||+|||++.++.+||+|||++.
T Consensus       103 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~  182 (326)
T 3uim_A          103 LLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAK  182 (326)
T ss_dssp             EEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCE
T ss_pred             EEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCcccc
Confidence            99999999999999998753  23489999999999999999999999   99999999999999999999999999997


Q ss_pred             ccCCC----------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSCK----------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~~----------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .....                |+      ....+|+|++|++++++++|..||.
T Consensus       183 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  236 (326)
T 3uim_A          183 LMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFD  236 (326)
T ss_dssp             ECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBC
T ss_pred             ccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccc
Confidence            54211                11      1123489999999999999999984

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.96  E-value=4.5e-29  Score=249.78  Aligned_cols=187  Identities=17%  Similarity=0.186  Sum_probs=158.2

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEE
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYAS  374 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  374 (489)
                      ...+..++|++.+.||+|+||.||+|.+.     .+++.||+|.+....  .......+.+|+.+++.++||||++++++
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   96 (322)
T 1p4o_A           19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGV   96 (322)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence            34556678999999999999999999887     357899999997542  34455678899999999999999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc
Q 042772          375 FQTSTHICLITDFCPGGELFALLDKQP--------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH  446 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~~~--------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~  446 (489)
                      +......++||||+++|+|.+++....        ...+++..+..++.|++.||.|||++||+||||||+||+++.++.
T Consensus        97 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~  176 (322)
T 1p4o_A           97 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFT  176 (322)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCC
T ss_pred             EccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCe
Confidence            999999999999999999999997531        134689999999999999999999999999999999999999999


Q ss_pred             EEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          447 VVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       447 vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +||+|||++.....                 +|+      ....+|+|++|++++++++ |..||.
T Consensus       177 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  242 (322)
T 1p4o_A          177 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ  242 (322)
T ss_dssp             EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTT
T ss_pred             EEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccc
Confidence            99999999864321                 111      1223589999999999998 888884

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.96  E-value=1.9e-28  Score=241.90  Aligned_cols=179  Identities=20%  Similarity=0.255  Sum_probs=154.3

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~  381 (489)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|.+.....     ...+.+|+.+++.+ .|||++.+++++......
T Consensus         7 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~   81 (298)
T 1csn_A            7 VVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHN   81 (298)
T ss_dssp             EETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEE
T ss_pred             ccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc-----cHHHHHHHHHHHHHhcCCCCCeEEeecCCCcee
Confidence            345689999999999999999999999999999999865422     23466799999998 799999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc-----EEEEecCCcc
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH-----VVLTDFDLSF  456 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~-----vKL~DFGlS~  456 (489)
                      ++||||+ +++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.     +||+|||+|.
T Consensus        82 ~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~  159 (298)
T 1csn_A           82 VLVIDLL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK  159 (298)
T ss_dssp             EEEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred             EEEEEec-CCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence            9999999 999999998753 34899999999999999999999999999999999999987776     9999999986


Q ss_pred             ccCCC----------------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSCK----------------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~~----------------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .....                      |+      ....+|+|++|++++++++|..||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  219 (298)
T 1csn_A          160 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQ  219 (298)
T ss_dssp             ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             ccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcc
Confidence            43211                      11      1223589999999999999999985

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.96  E-value=6.9e-29  Score=245.43  Aligned_cols=182  Identities=25%  Similarity=0.387  Sum_probs=150.2

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      .++..++|++.+.||+|+||.||+|.+..   .||+|+++... ......+.+.+|+.+++.++||||+++++++ ....
T Consensus        19 ~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~---~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~   93 (289)
T 3og7_A           19 WEIPDGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQ   93 (289)
T ss_dssp             CBCCTTSCEEEEEEEECSSEEEEEEESSS---EEEEEEESCSS-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSS
T ss_pred             CccCccceeeeeEecCCCCeEEEEEEEcC---ceEEEEEeccC-CCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCc
Confidence            35677899999999999999999998654   49999997543 2455667889999999999999999999954 5567


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-  459 (489)
                      .++||||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.... 
T Consensus        94 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  172 (289)
T 3og7_A           94 LAIVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSR  172 (289)
T ss_dssp             CEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC-------
T ss_pred             cEEEEEecCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceecccccc
Confidence            899999999999999997653 458999999999999999999999999999999999999999999999999986322 


Q ss_pred             ----------------CCCce---------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------------CKPQV---------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------------~~~~~---------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                      .+|+.         ....|+|++|++++++++|..||.
T Consensus       173 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~  226 (289)
T 3og7_A          173 WSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYS  226 (289)
T ss_dssp             -----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             ccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCcc
Confidence                            11211         124599999999999999999985

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=244.16  Aligned_cols=177  Identities=23%  Similarity=0.403  Sum_probs=147.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE--------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ--------  376 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~--------  376 (489)
                      .++|++++.||+|+||.||+|.+..+++.||+|.+...   .....+.+.+|+.+++.++||||+++++++.        
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   86 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT---DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD   86 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC---ChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence            46899999999999999999999999999999998654   4456678889999999999999999999873        


Q ss_pred             ------eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe-cCCcEEE
Q 042772          377 ------TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-KDGHVVL  449 (489)
Q Consensus       377 ------~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld-~~g~vKL  449 (489)
                            .....|+||||++ |+|.+++..   ..+++..++.++.|++.||.|||++||+||||||+|||++ .++.+||
T Consensus        87 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl  162 (320)
T 2i6l_A           87 DVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKI  162 (320)
T ss_dssp             ----CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEE
T ss_pred             ccccccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEE
Confidence                  3468999999996 699999975   3489999999999999999999999999999999999998 5679999


Q ss_pred             EecCCccccCC------------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          450 TDFDLSFMTSC------------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       450 ~DFGlS~~~~~------------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +|||++.....                  +|+       ....+|+|++|++++++++|..||.
T Consensus       163 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~  226 (320)
T 2i6l_A          163 GDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFA  226 (320)
T ss_dssp             CCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCC
Confidence            99999874321                  111       1223489999999999999999985

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.2e-28  Score=249.38  Aligned_cols=185  Identities=22%  Similarity=0.262  Sum_probs=154.2

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCC----cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAG----ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg----~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      .++...+|++.+.||+|+||.||+|.+..++    ..||+|.+....  .......+.+|+.+++.++||||+++++++.
T Consensus        39 ~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  116 (333)
T 1mqb_A           39 TEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS  116 (333)
T ss_dssp             CBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             ccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEe
Confidence            3566678999999999999999999987653    469999997542  3445567889999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          377 TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      .....++||||+++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus       117 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  195 (333)
T 1mqb_A          117 KYKPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSR  195 (333)
T ss_dssp             SSSSEEEEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             cCCCcEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcch
Confidence            9999999999999999999998753 358999999999999999999999999999999999999999999999999986


Q ss_pred             ccCCC------------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          457 MTSCK------------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       457 ~~~~~------------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .....                  |+      ....+|+|++|++++++++ |..||.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~  252 (333)
T 1mqb_A          196 VLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW  252 (333)
T ss_dssp             ---------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             hhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcc
Confidence            53211                  11      1123589999999999998 999984

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.96  E-value=2.2e-28  Score=241.14  Aligned_cols=183  Identities=23%  Similarity=0.259  Sum_probs=155.3

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ....+|.....||+|+||.||+|.+..+++.||+|.+...   .....+.+.+|+.+++.++||||+++++++......+
T Consensus        19 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   95 (295)
T 2clq_A           19 YEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER---DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIK   95 (295)
T ss_dssp             ECBCTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC---CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             ccccCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC---chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEE
Confidence            4455677777999999999999999999999999999754   2334567888999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-CCcEEEEecCCccccCC
Q 042772          383 LITDFCPGGELFALLDKQP-MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~-~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-~g~vKL~DFGlS~~~~~  460 (489)
                      +||||+++++|.+++.... ...+++..+..++.|++.||.|||++||+|+||||+||+++. ++.+||+|||++.....
T Consensus        96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~  175 (295)
T 2clq_A           96 IFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG  175 (295)
T ss_dssp             EEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC
T ss_pred             EEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCC
Confidence            9999999999999998753 234678999999999999999999999999999999999997 89999999999864321


Q ss_pred             ---------------CCc--------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------------KPQ--------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------------~~~--------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                     +|+        .....|+|++|++++++++|..||.
T Consensus       176 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  226 (295)
T 2clq_A          176 INPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFY  226 (295)
T ss_dssp             -----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTG
T ss_pred             CCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCcc
Confidence                           111        1234589999999999999999984

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.96  E-value=5.5e-29  Score=246.61  Aligned_cols=180  Identities=24%  Similarity=0.401  Sum_probs=154.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||.||+|.+..+++.||+|.+...   .......+..|+.+++.++||||+++++++......++|
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   94 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK---SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM   94 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC---CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence            46799999999999999999999999999999998654   233456788899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc------
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT------  458 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~------  458 (489)
                      |||+++++|.+++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||++...      
T Consensus        95 ~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  173 (302)
T 2j7t_A           95 IEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQK  173 (302)
T ss_dssp             EECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC
T ss_pred             EEeCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccccccccc
Confidence            99999999999987643 34899999999999999999999999999999999999999999999999986321      


Q ss_pred             ---------CCCCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          459 ---------SCKPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ---------~~~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               ..+|+.           ...+|+|++|.+++++++|..||.
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  223 (302)
T 2j7t_A          174 RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHH  223 (302)
T ss_dssp             -----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCc
Confidence                     012222           124699999999999999999985

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.96  E-value=8.9e-29  Score=242.30  Aligned_cols=183  Identities=19%  Similarity=0.375  Sum_probs=156.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--CCeEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--STHIC  382 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~~~  382 (489)
                      .++|++.+.||+|+||.||+|.++.+++.||+|.+..... .....+.+..|+.+++.++||||+++++++..  ...++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   83 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM-TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   83 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccC-CHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence            4689999999999999999999999999999999976543 34456788899999999999999999998854  56899


Q ss_pred             EEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          383 LITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLG-----IIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~g-----IvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      +||||+++++|.+++...  ....+++..++.++.|++.||.|||++|     |+||||||+||+++.++.+||+|||++
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~  163 (279)
T 2w5a_A           84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA  163 (279)
T ss_dssp             EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHH
T ss_pred             EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchh
Confidence            999999999999999763  2234899999999999999999999999     999999999999999999999999998


Q ss_pred             cccCC---------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSC---------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~---------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .....               +|+      ....+|+|++|.+++++++|..||.
T Consensus       164 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  217 (279)
T 2w5a_A          164 RILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFT  217 (279)
T ss_dssp             HHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             eeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCc
Confidence            64321               111      1234589999999999999999985

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.96  E-value=8.5e-29  Score=243.51  Aligned_cols=185  Identities=23%  Similarity=0.309  Sum_probs=147.5

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      ++..++|++++.||+|+||.||+|.+..+++.||+|.+..... .......+..+..+++.++||||+++++++......
T Consensus         3 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~   81 (290)
T 3fme_A            3 EVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN-SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDV   81 (290)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C-HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSE
T ss_pred             cccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC-cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCE
Confidence            3456789999999999999999999999999999999975432 223333444455557888999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          382 CLITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ++||||++ |+|.+++...  ....+++..+..++.|++.||.|||++ ||+||||||+||+++.++.+||+|||++...
T Consensus        82 ~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  160 (290)
T 3fme_A           82 WICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL  160 (290)
T ss_dssp             EEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred             EEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence            99999996 5988877641  234589999999999999999999998 9999999999999999999999999998532


Q ss_pred             C--------------CCCce----------eecccccchHHHHHHHHhCCcccC
Q 042772          459 S--------------CKPQV----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~--------------~~~~~----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .              .+|+.          ....|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  214 (290)
T 3fme_A          161 VDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYD  214 (290)
T ss_dssp             ---------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             cccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcc
Confidence            2              11222          124589999999999999999985

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.96  E-value=1.4e-28  Score=241.69  Aligned_cols=183  Identities=23%  Similarity=0.293  Sum_probs=153.8

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcC---CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQG---AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~---tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      .+..++|++.+.||+|+||.||+|.+..   ++..||+|.+.+..  .....+.+.+|+.+++.++||||+++++++...
T Consensus         8 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   85 (281)
T 3cc6_A            8 GIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC--TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE   85 (281)
T ss_dssp             SCCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS--CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS
T ss_pred             eecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc--CchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC
Confidence            4556789999999999999999999764   34579999987642  344567888999999999999999999988654


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                       ..++||||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++...
T Consensus        86 -~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  163 (281)
T 3cc6_A           86 -PTWIIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYI  163 (281)
T ss_dssp             -SCEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC
T ss_pred             -CCEEEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCccc
Confidence             5789999999999999997753 34899999999999999999999999999999999999999999999999998643


Q ss_pred             CCC----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SCK----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~~----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ...                |+      ....+|+|++|.+++++++ |..||.
T Consensus       164 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~  216 (281)
T 3cc6_A          164 EDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFF  216 (281)
T ss_dssp             ---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             ccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcc
Confidence            211                11      1123489999999999998 999984

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.96  E-value=4.2e-29  Score=252.62  Aligned_cols=185  Identities=21%  Similarity=0.319  Sum_probs=159.2

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchH--------------HHHHHHHHHHHHHhCCCCC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN--------------KVHRACIEREIMSLLDHPF  367 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~--------------~~~~~~~E~~il~~l~Hpn  367 (489)
                      ....++|++.+.||+|+||.||+|.+  +++.||+|.+.........              ....+.+|+.+++.++|||
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~  104 (348)
T 2pml_X           27 DKYINDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEY  104 (348)
T ss_dssp             CEEETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTT
T ss_pred             ccccCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCC
Confidence            34567899999999999999999998  7999999999765432211              1267889999999999999


Q ss_pred             cceeeEEEEeCCeEEEEEecCCCCCHHHH------HhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEE
Q 042772          368 LPTLYASFQTSTHICLITDFCPGGELFAL------LDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENIL  440 (489)
Q Consensus       368 Iv~l~~~~~~~~~~~lVmEy~~ggsL~~~------L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NIL  440 (489)
                      |+++++++......++||||+++|+|.++      +.......+++..+..++.|++.||.|||+ +||+||||||+||+
T Consensus       105 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil  184 (348)
T 2pml_X          105 CLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNIL  184 (348)
T ss_dssp             BCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEE
T ss_pred             cceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEE
Confidence            99999999999999999999999999998      665445669999999999999999999999 99999999999999


Q ss_pred             EecCCcEEEEecCCccccCC-------------CCc-------eee-cccccchHHHHHHHHhCCcccC
Q 042772          441 LQKDGHVVLTDFDLSFMTSC-------------KPQ-------VFY-HAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       441 ld~~g~vKL~DFGlS~~~~~-------------~~~-------~~~-~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ++.++.+||+|||++.....             +|+       ... .+|+|++|++++++++|..||.
T Consensus       185 ~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  253 (348)
T 2pml_X          185 MDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFS  253 (348)
T ss_dssp             ECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             EcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999865321             122       112 5699999999999999999985

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.96  E-value=2e-28  Score=244.13  Aligned_cols=179  Identities=26%  Similarity=0.397  Sum_probs=151.2

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|.+....     ....+.+|+.+++.++||||+++++++......|+
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l  101 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI  101 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence            3467999999999999999999999999999999997542     23567889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC--
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK--  461 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~--  461 (489)
                      ||||+++++|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++......  
T Consensus       102 v~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  180 (314)
T 3com_A          102 VMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA  180 (314)
T ss_dssp             EEECCTTEEHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS
T ss_pred             EeecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc
Confidence            999999999999997432 44899999999999999999999999999999999999999999999999998643211  


Q ss_pred             -------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 -------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   |+      ....+|+|++|++++++++|..||.
T Consensus       181 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  226 (314)
T 3com_A          181 KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYA  226 (314)
T ss_dssp             CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence                         11      1234589999999999999999985

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.96  E-value=2e-28  Score=250.61  Aligned_cols=177  Identities=19%  Similarity=0.307  Sum_probs=153.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----Ce
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----TH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----~~  380 (489)
                      .+|++++.||+|+||.||+|.+..+++.||+|.+...  ........+.+|+.+++.++||||+++++++...     ..
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  104 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF--EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD  104 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCT--TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccc--cCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence            5799999999999999999999999999999999753  2345567888999999999999999999998765     36


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-  459 (489)
                      .|+||||+. |+|.+++...   .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|.... 
T Consensus       105 ~~iv~e~~~-~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~  180 (364)
T 3qyz_A          105 VYIVQDLME-TDLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADP  180 (364)
T ss_dssp             EEEEEECCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             EEEEEcccC-cCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCC
Confidence            999999996 6999999874   38999999999999999999999999999999999999999999999999986432 


Q ss_pred             -----------------CCCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 -----------------CKPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----------------~~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                       .+|+       .....|+|++|++++++++|..||.
T Consensus       181 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~  233 (364)
T 3qyz_A          181 DHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP  233 (364)
T ss_dssp             GGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCC
Confidence                             1111       1223489999999999999999985

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.96  E-value=1.1e-28  Score=253.06  Aligned_cols=179  Identities=23%  Similarity=0.328  Sum_probs=153.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC--------CCCcceeeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--------HPFLPTLYASFQ  376 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~--------HpnIv~l~~~~~  376 (489)
                      .++|++.+.||+|+||+||+|.+..+++.||+|++...    ......+.+|+.+++.+.        ||||+++++++.
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~  111 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA----EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFK  111 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC----CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeeccee
Confidence            46899999999999999999999999999999999643    344567788999998885        788999999987


Q ss_pred             ----eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCC------
Q 042772          377 ----TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDG------  445 (489)
Q Consensus       377 ----~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g------  445 (489)
                          ....+|+||||+ +++|.+++.......+++..++.++.||+.||.|||++ ||+||||||+|||++.++      
T Consensus       112 ~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~  190 (397)
T 1wak_A          112 ISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRL  190 (397)
T ss_dssp             EEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHH
T ss_pred             ecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhh
Confidence                456899999999 77888888776555699999999999999999999999 999999999999998775      


Q ss_pred             -------------------------------------------cEEEEecCCccccCC------------CCc------e
Q 042772          446 -------------------------------------------HVVLTDFDLSFMTSC------------KPQ------V  464 (489)
Q Consensus       446 -------------------------------------------~vKL~DFGlS~~~~~------------~~~------~  464 (489)
                                                                 .+||+|||+|+....            +|+      .
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~  270 (397)
T 1wak_A          191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGY  270 (397)
T ss_dssp             HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCC
T ss_pred             hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCC
Confidence                                                       799999999864321            111      2


Q ss_pred             eecccccchHHHHHHHHhCCcccC
Q 042772          465 FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       465 ~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...+|+|++|++++++++|..||.
T Consensus       271 ~~~~DiwslG~il~elltg~~pf~  294 (397)
T 1wak_A          271 NTPADIWSTACMAFELATGDYLFE  294 (397)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CcHHHHHHHHHHHHHHhhCCCCCC
Confidence            234599999999999999999995

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.96  E-value=1.1e-28  Score=245.60  Aligned_cols=184  Identities=23%  Similarity=0.322  Sum_probs=155.3

Q ss_pred             ccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQ  376 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  376 (489)
                      +..++|++.+.||+|+||.||+|.+.     .+++.||+|.+....  .......+.+|+.+++.+ +||||+++++++.
T Consensus        24 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  101 (316)
T 2xir_A           24 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLGACT  101 (316)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC--CcHHHHHHHHHHHHHHhcccCCCeeeEEEEEe
Confidence            44578999999999999999999863     467899999997542  344556788999999999 6999999999987


Q ss_pred             eCC-eEEEEEecCCCCCHHHHHhhCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE
Q 042772          377 TST-HICLITDFCPGGELFALLDKQPM--------------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL  441 (489)
Q Consensus       377 ~~~-~~~lVmEy~~ggsL~~~L~~~~~--------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl  441 (489)
                      ..+ .+++||||+++|+|.+++.....              ..+++..+..++.|++.||.|||++||+||||||+||++
T Consensus       102 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~  181 (316)
T 2xir_A          102 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILL  181 (316)
T ss_dssp             CTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEE
T ss_pred             cCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEE
Confidence            754 59999999999999999987542              127899999999999999999999999999999999999


Q ss_pred             ecCCcEEEEecCCccccCCCC-----------------c------eeecccccchHHHHHHHHh-CCcccC
Q 042772          442 QKDGHVVLTDFDLSFMTSCKP-----------------Q------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       442 d~~g~vKL~DFGlS~~~~~~~-----------------~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +.++.+||+|||++......+                 +      ....+|+|++|++++++++ |..||.
T Consensus       182 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~  252 (316)
T 2xir_A          182 SEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP  252 (316)
T ss_dssp             CGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             CCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCc
Confidence            999999999999997543211                 1      1123488999999999997 999985

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.96  E-value=9e-29  Score=249.61  Aligned_cols=182  Identities=25%  Similarity=0.371  Sum_probs=156.0

Q ss_pred             cCcccc-cccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEE
Q 042772          306 HHFKPI-KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       306 ~~y~~~-~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~l  383 (489)
                      ++|.+. +.||+|+||.||+|.++.+++.||+|++.+... .......+.+|+.+++.+. ||||+++++++......++
T Consensus        28 ~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~l  106 (327)
T 3lm5_A           28 NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRR-GQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIIL  106 (327)
T ss_dssp             HHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEET-TEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhc-chHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEE
Confidence            457777 899999999999999999999999999976543 2233567888999999984 7999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEEEEecCCccccCC
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vKL~DFGlS~~~~~  460 (489)
                      ||||+++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.   ++.+||+|||++.....
T Consensus       107 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~  186 (327)
T 3lm5_A          107 ILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGH  186 (327)
T ss_dssp             EEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC--
T ss_pred             EEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCC
Confidence            999999999999997665566999999999999999999999999999999999999987   78999999999965431


Q ss_pred             C--------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 K--------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ~--------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .              |      ......|+|++|++++++++|..||.
T Consensus       187 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  234 (327)
T 3lm5_A          187 ACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFV  234 (327)
T ss_dssp             -------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            1              1      11234589999999999999999985

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.96  E-value=1.9e-28  Score=242.25  Aligned_cols=169  Identities=27%  Similarity=0.338  Sum_probs=141.9

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHh--CCCCCcceeeEEEEeC---
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTLYASFQTS---  378 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~~~---  378 (489)
                      ..++|++.+.||+|+||.||+|.+  +++.||+|++...      ....+..|.+++..  ++||||+++++++...   
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~   77 (301)
T 3q4u_A            6 VARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHS   77 (301)
T ss_dssp             CGGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETT
T ss_pred             ccCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCC
Confidence            356899999999999999999987  5899999998643      22445567777776  7899999999986543   


Q ss_pred             -CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH--------HCCCeecCCCCCCEEEecCCcEEE
Q 042772          379 -THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH--------CLGIIYRDLKPENILLQKDGHVVL  449 (489)
Q Consensus       379 -~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH--------~~gIvHrDLKP~NILld~~g~vKL  449 (489)
                       ..+++||||+++|+|.+++..   ..+++..+..++.|++.||.|||        ++||+||||||+|||++.++.+||
T Consensus        78 ~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl  154 (301)
T 3q4u_A           78 STQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCI  154 (301)
T ss_dssp             EEEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEE
T ss_pred             CceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEE
Confidence             468999999999999999965   34899999999999999999999        999999999999999999999999


Q ss_pred             EecCCccccCC-------------------CCcee------------ecccccchHHHHHHHHhC
Q 042772          450 TDFDLSFMTSC-------------------KPQVF------------YHAHVNGFYFIMYKWLTG  483 (489)
Q Consensus       450 ~DFGlS~~~~~-------------------~~~~~------------~~~~v~s~g~~a~e~~~G  483 (489)
                      +|||+|+....                   +|+..            ..+|+|++|++++++++|
T Consensus       155 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg  219 (301)
T 3q4u_A          155 ADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARR  219 (301)
T ss_dssp             CCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhh
Confidence            99999853211                   12111            245899999999999999

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.96  E-value=2.6e-29  Score=257.96  Aligned_cols=181  Identities=15%  Similarity=0.214  Sum_probs=138.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC--CCCCcceee-------EEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL--DHPFLPTLY-------ASFQ  376 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l--~HpnIv~l~-------~~~~  376 (489)
                      ..|++.+.||+|+||.||+|.+..+++.||+|++.............+..|+.+++.+  +||||++++       +++.
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~  141 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA  141 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence            4599999999999999999999999999999999886554556667788886555544  699988755       4443


Q ss_pred             eC-----------------CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHH------HHHHHHHHHHHHHHHHCCCeecC
Q 042772          377 TS-----------------THICLITDFCPGGELFALLDKQPMKIFREDSA------RFYAAEVVIGLEYLHCLGIIYRD  433 (489)
Q Consensus       377 ~~-----------------~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~------~~i~~qI~~aL~yLH~~gIvHrD  433 (489)
                      ..                 ..+|+||||++ |+|.+++..... .+++...      ..++.||+.||.|||++||+|||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrD  219 (371)
T 3q60_A          142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-VYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGH  219 (371)
T ss_dssp             ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCc
Confidence            32                 34899999997 899999986421 2344444      56779999999999999999999


Q ss_pred             CCCCCEEEecCCcEEEEecCCccccCC------------CCc--------eeecccccchHHHHHHHHhCCcccC
Q 042772          434 LKPENILLQKDGHVVLTDFDLSFMTSC------------KPQ--------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       434 LKP~NILld~~g~vKL~DFGlS~~~~~------------~~~--------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      |||+|||++.+|.+||+|||+|+....            +|+        ....+|+|++|++++++++|..||.
T Consensus       220 ikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~  294 (371)
T 3q60_A          220 FTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFG  294 (371)
T ss_dssp             CSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred             CCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999864331            111        1234589999999999999999985

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=5.9e-29  Score=252.86  Aligned_cols=182  Identities=23%  Similarity=0.319  Sum_probs=148.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc--hHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN--RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|.+.......  ......+.+|+.+++.++||||+++++++......+
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS   88 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence            467999999999999999999999999999999997543221  112346778999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      +||||+++ +|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+++....  
T Consensus        89 lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~  166 (346)
T 1ua2_A           89 LVFDFMET-DLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPN  166 (346)
T ss_dssp             EEEECCSE-EHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCC
T ss_pred             EEEEcCCC-CHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCCc
Confidence            99999965 8999887653 3588999999999999999999999999999999999999999999999999864321  


Q ss_pred             -------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+       ....+|+|++|++++++++|..||.
T Consensus       167 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~  214 (346)
T 1ua2_A          167 RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLP  214 (346)
T ss_dssp             CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence                         111       1224489999999999999998874

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.96  E-value=8.8e-29  Score=242.64  Aligned_cols=183  Identities=23%  Similarity=0.330  Sum_probs=154.3

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ...+..++|++++.||+|+||.||+|.+. ++..||+|.+.....    ..+.+.+|+.+++.++||||+++++++. .+
T Consensus         7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~   80 (279)
T 1qpc_A            7 EWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSM----SPDAFLAEANLMKQLQHQRLVRLYAVVT-QE   80 (279)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SS
T ss_pred             hcccCHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCcc----cHHHHHHHHHHHHhCCCcCcceEEEEEc-CC
Confidence            34566678999999999999999999976 467899999875432    2456788999999999999999999876 45


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++||||+++++|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++....
T Consensus        81 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  160 (279)
T 1qpc_A           81 PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE  160 (279)
T ss_dssp             SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             CcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCccccccc
Confidence            68999999999999999976432358999999999999999999999999999999999999999999999999987543


Q ss_pred             CC----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          460 CK----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ~~----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ..                |+      ....+|+|++|++++++++ |..||.
T Consensus       161 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  212 (279)
T 1qpc_A          161 DNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP  212 (279)
T ss_dssp             SSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             CcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCc
Confidence            11                11      1123489999999999998 999984

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.96  E-value=4.6e-29  Score=244.85  Aligned_cols=186  Identities=22%  Similarity=0.383  Sum_probs=151.3

Q ss_pred             hcCCCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEE
Q 042772          296 ITGSGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASF  375 (489)
Q Consensus       296 ~~~~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  375 (489)
                      ....+..+..++|++.+.||+|+||.||+|.+.  |+.||+|.++...     ..+.+.+|+.+++.++||||+++++++
T Consensus        11 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~~iv~~~~~~   83 (278)
T 1byg_A           11 FYRSGWALNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVI   83 (278)
T ss_dssp             ----CCBCCGGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEE
T ss_pred             hhhccccCChhhceEEeEEecCCCceEEEEEEc--CCEEEEEEecchh-----HHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            334455677789999999999999999999875  7899999986432     346788899999999999999999987


Q ss_pred             EeC-CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          376 QTS-THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       376 ~~~-~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                      ... ...++||||+++++|.+++.......+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||+
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~  163 (278)
T 1byg_A           84 VEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGL  163 (278)
T ss_dssp             CCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC
T ss_pred             EcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccc
Confidence            554 4799999999999999999875433478999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          455 SFMTSC------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       455 S~~~~~------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +.....            +|+      ....+|+|++|.+++++++ |..||.
T Consensus       164 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~  216 (278)
T 1byg_A          164 TKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  216 (278)
T ss_dssp             ------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCT
T ss_pred             cccccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCC
Confidence            864331            111      1234589999999999997 999985

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.96  E-value=9.7e-29  Score=254.48  Aligned_cols=179  Identities=24%  Similarity=0.386  Sum_probs=141.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------  378 (489)
                      .++|++++.||+|+||.||+|.+..+|+.||+|.+.... ........+.+|+.+++.++||||+++++++...      
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF-QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc-cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            368999999999999999999999999999999986543 2445567888999999999999999999998654      


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+|++||++ +++|.+++..   ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~  182 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT  182 (367)
T ss_dssp             CCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC-------
T ss_pred             CeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccccccc
Confidence            5689999999 7899998876   34899999999999999999999999999999999999999999999999999643


Q ss_pred             CC------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..            +|+       .....|+|++|++++++++|..||.
T Consensus       183 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~  231 (367)
T 2fst_X          183 ADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFP  231 (367)
T ss_dssp             --------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            21            111       2234599999999999999999985

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.96  E-value=2.1e-28  Score=253.81  Aligned_cols=179  Identities=21%  Similarity=0.286  Sum_probs=153.3

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC--CCCcceeeEEEEeCCeE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTLYASFQTSTHI  381 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~--HpnIv~l~~~~~~~~~~  381 (489)
                      ...+|++++.||+|+||.||+|.+.. ++.||+|.+..... .......+.+|+.+++.+.  ||||+++++++.....+
T Consensus        54 ~~~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~  131 (390)
T 2zmd_A           54 KGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI  131 (390)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             cCCceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccc-cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEE
Confidence            34569999999999999999999875 89999999976543 4456678899999999996  59999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+||| +.+++|.+++....  .+++..+..++.||+.||.|||++||+||||||+|||++ ++.+||+|||+|+.... 
T Consensus       132 ~lv~E-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~  207 (390)
T 2zmd_A          132 YMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD  207 (390)
T ss_dssp             EEEEE-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred             EEEEe-cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence            99999 55889999998864  489999999999999999999999999999999999995 68999999999964321 


Q ss_pred             ----------------CCce-----------------eecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------------KPQV-----------------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------------~~~~-----------------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                      +|+.                 ...+|+|++|++++++++|..||.
T Consensus       208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~  268 (390)
T 2zmd_A          208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQ  268 (390)
T ss_dssp             ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcch
Confidence                            1221                 123589999999999999999985

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=248.86  Aligned_cols=182  Identities=25%  Similarity=0.335  Sum_probs=150.4

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEE----EEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELY----AMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~v----AiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      +..++|++++.||+|+||.||+|.+..+++.+    |+|.+...  ........+.+|+.+++.++||||+++++++...
T Consensus        12 l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   89 (327)
T 3lzb_A           12 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA--TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS   89 (327)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCC--SSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESS
T ss_pred             cCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccc--cCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecC
Confidence            44578999999999999999999998888765    55555332  2333457788999999999999999999999876


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      . .++||+|+++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+..
T Consensus        90 ~-~~~v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~  167 (327)
T 3lzb_A           90 T-VQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             S-EEEEECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred             C-ceEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence            5 889999999999999998754 34899999999999999999999999999999999999999999999999999653


Q ss_pred             CC-----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SC-----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~-----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ..                 +|+      .....|+|++|++++++++ |..||.
T Consensus       168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~  221 (327)
T 3lzb_A          168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD  221 (327)
T ss_dssp             ------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCC
Confidence            21                 111      1124489999999999998 999985

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.8e-28  Score=245.46  Aligned_cols=183  Identities=25%  Similarity=0.370  Sum_probs=155.7

Q ss_pred             cccccCcccccccCCCCceEEEEEEE----cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVEL----QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~----~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      .+...+|++++.||+|+||.||+|.+    ..+++.||+|.+...   .....+.+.+|+.+++.++||||+++++++..
T Consensus        37 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  113 (326)
T 2w1i_A           37 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---TEEHLRDFEREIEILKSLQHDNIVKYKGVCYS  113 (326)
T ss_dssp             CCCGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC---CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC
T ss_pred             ccCHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEe
Confidence            34557899999999999999999994    567999999998754   34556788899999999999999999998865


Q ss_pred             CC--eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          378 ST--HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       378 ~~--~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                      ..  .+++||||+++++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++
T Consensus       114 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~  192 (326)
T 2w1i_A          114 AGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT  192 (326)
T ss_dssp             ----CCEEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcch
Confidence            43  7899999999999999998764 34899999999999999999999999999999999999999999999999999


Q ss_pred             cccCCC------------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSCK------------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~~------------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ......                  |+      ....+|+|++|++++++++|..||.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~  249 (326)
T 2w1i_A          193 KVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSK  249 (326)
T ss_dssp             EECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             hhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCC
Confidence            754321                  11      1123588999999999999988874

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=269.22  Aligned_cols=181  Identities=23%  Similarity=0.348  Sum_probs=151.9

Q ss_pred             cccCccccc-ccCCCCceEEEEEEEc--CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          304 GLHHFKPIK-PLGCGDTGSVHLVELQ--GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       304 ~~~~y~~~~-~LG~G~fG~Vy~a~~~--~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..+++.+.+ .||+|+||.||+|.++  .++..||+|+++...  .....+.+.+|+.+++.++||||+++++++.. ..
T Consensus       333 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~  409 (613)
T 2ozo_A          333 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EA  409 (613)
T ss_dssp             CTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCC--SSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SS
T ss_pred             cccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCC--ChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CC
Confidence            344555555 7999999999999886  356789999997642  33456788899999999999999999999876 56


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +++||||+++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+....
T Consensus       410 ~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~  488 (613)
T 2ozo_A          410 LMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGA  488 (613)
T ss_dssp             EEEEEECCTTCBHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-
T ss_pred             eEEEEEeCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccC
Confidence            999999999999999997653 4589999999999999999999999999999999999999999999999999975421


Q ss_pred             C------------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 K------------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ~------------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .                  |+      ....+|+|++|++++|+++ |..||.
T Consensus       489 ~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~  541 (613)
T 2ozo_A          489 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYK  541 (613)
T ss_dssp             -------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             CCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            1                  11      1123489999999999997 999985

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.96  E-value=3.1e-28  Score=242.96  Aligned_cols=186  Identities=24%  Similarity=0.250  Sum_probs=150.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcC---CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQG---AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~---tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      .+..++|.+.+.||+|+||.||+|.+..   +++.||+|.++.... .......+.+|+.+++.++||||+++++++...
T Consensus        30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  108 (313)
T 3brb_A           30 VIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS-SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM  108 (313)
T ss_dssp             BCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC-CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred             ccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc-chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence            4556789999999999999999998765   566899999875432 345567788999999999999999999998765


Q ss_pred             C-----eEEEEEecCCCCCHHHHHhhC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEE
Q 042772          379 T-----HICLITDFCPGGELFALLDKQ----PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVL  449 (489)
Q Consensus       379 ~-----~~~lVmEy~~ggsL~~~L~~~----~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL  449 (489)
                      .     ..++||||+++|+|.+++...    ....+++..++.++.||+.||.|||++||+||||||+|||++.++.+||
T Consensus       109 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl  188 (313)
T 3brb_A          109 SSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCV  188 (313)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEE
T ss_pred             cccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEE
Confidence            4     459999999999999998532    2345899999999999999999999999999999999999999999999


Q ss_pred             EecCCccccCCC-----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          450 TDFDLSFMTSCK-----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       450 ~DFGlS~~~~~~-----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      +|||++......                 |+      ....+|+|++|++++++++ |..||.
T Consensus       189 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  251 (313)
T 3brb_A          189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYP  251 (313)
T ss_dssp             CSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             eecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCc
Confidence            999998643211                 11      1123489999999999999 888885

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.96  E-value=9.9e-29  Score=261.13  Aligned_cols=182  Identities=24%  Similarity=0.338  Sum_probs=154.2

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..+..++|++.+.||+|+||.||+|.+.. +..||+|.++....    ..+.+.+|+.+++.++||||+++++++.. ..
T Consensus       179 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~  252 (452)
T 1fmk_A          179 WEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP  252 (452)
T ss_dssp             SBCCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             cccChhHceeeeeecCCCCeEEEEEEECC-CceEEEEEeccCCC----CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-Cc
Confidence            45667789999999999999999999886 46799999976432    23568889999999999999999998866 67


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +++||||+++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+....
T Consensus       253 ~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  332 (452)
T 1fmk_A          253 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED  332 (452)
T ss_dssp             CEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC----
T ss_pred             eEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCC
Confidence            89999999999999999764334589999999999999999999999999999999999999999999999999975421


Q ss_pred             ----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                      +|+      ....+|+|++|++++++++ |..||.
T Consensus       333 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~  383 (452)
T 1fmk_A          333 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  383 (452)
T ss_dssp             ----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             CceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCC
Confidence                            111      1123589999999999998 999985

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=2.2e-28  Score=241.55  Aligned_cols=178  Identities=19%  Similarity=0.215  Sum_probs=149.6

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCc---EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE-E
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGE---LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI-C  382 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~---~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~-~  382 (489)
                      .|+..+.||+|+||.||+|.+..++.   .||+|.+...  ......+.+.+|+.+++.++||||+++++++...... +
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   99 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI--TEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH   99 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeecccc--ccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence            57777999999999999999866554   7999998653  3455677888999999999999999999999876554 9


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      +||||+.+|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....  
T Consensus       100 ~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  178 (298)
T 3pls_A          100 VLLPYMCHGDLLQFIRSPQ-RNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDRE  178 (298)
T ss_dssp             EEECCCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred             EEEecccCCCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence            9999999999999998743 4589999999999999999999999999999999999999999999999999963321  


Q ss_pred             -----------------CC------ceeecccccchHHHHHHHHhCCccc
Q 042772          461 -----------------KP------QVFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       461 -----------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                                       +|      .....+|+|++|++++++++|..|+
T Consensus       179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~  228 (298)
T 3pls_A          179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPP  228 (298)
T ss_dssp             GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCT
T ss_pred             ccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCC
Confidence                             01      1123458999999999999965553

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.96  E-value=2.9e-28  Score=240.23  Aligned_cols=148  Identities=26%  Similarity=0.456  Sum_probs=133.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--------  377 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--------  377 (489)
                      ++|++++.||+|+||.||+|.+..+++.||+|.+...    ......+.+|+.+++.++||||+++++++..        
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT----EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM   81 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC--
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhh
Confidence            5799999999999999999999999999999999643    3456778899999999999999999998865        


Q ss_pred             -----CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEec
Q 042772          378 -----STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDF  452 (489)
Q Consensus       378 -----~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DF  452 (489)
                           ....|+||||+++|+|.+++.... ..+++..++.++.|++.||.|||++||+||||||+|||++.++.+||+||
T Consensus        82 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~df  160 (303)
T 1zy4_A           82 TAVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDF  160 (303)
T ss_dssp             ----CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred             cccccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeC
Confidence                 457899999999999999998653 34788999999999999999999999999999999999999999999999


Q ss_pred             CCcccc
Q 042772          453 DLSFMT  458 (489)
Q Consensus       453 GlS~~~  458 (489)
                      |++...
T Consensus       161 g~~~~~  166 (303)
T 1zy4_A          161 GLAKNV  166 (303)
T ss_dssp             CCCSCT
T ss_pred             cchhhc
Confidence            998643

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.95  E-value=8.6e-29  Score=249.05  Aligned_cols=185  Identities=18%  Similarity=0.234  Sum_probs=151.6

Q ss_pred             cccccCcccccccCCCCceEEEEEE-----EcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVE-----LQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~-----~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      .+..++|++.+.||+|+||.||+|.     ...+++.||+|.+...  ........+.+|+.+++.++||||+++++++.
T Consensus        26 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  103 (327)
T 2yfx_A           26 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSEQDELDFLMEALIISKFNHQNIVRCIGVSL  103 (327)
T ss_dssp             BCCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cCChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc--cchhhHHHHHHHHHHHhhCCCCCCCeEEEEEc
Confidence            3556789999999999999999999     4567889999999643  23445567889999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEE
Q 042772          377 TSTHICLITDFCPGGELFALLDKQPM-----KIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVV  448 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~~-----~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vK  448 (489)
                      .....|+||||+++++|.+++.....     ..+++..+..++.|++.||.|||++||+||||||+|||++.   +..+|
T Consensus       104 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~k  183 (327)
T 2yfx_A          104 QSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAK  183 (327)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEE
T ss_pred             CCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEE
Confidence            99999999999999999999987532     34889999999999999999999999999999999999984   44699


Q ss_pred             EEecCCccccC-----------------CCCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          449 LTDFDLSFMTS-----------------CKPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       449 L~DFGlS~~~~-----------------~~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      |+|||++....                 .+|+      ....+|+|++|.+++++++ |..||.
T Consensus       184 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  247 (327)
T 2yfx_A          184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYP  247 (327)
T ss_dssp             ECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence            99999985321                 1111      1234589999999999997 999985

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.95  E-value=3.5e-28  Score=246.33  Aligned_cols=178  Identities=20%  Similarity=0.303  Sum_probs=153.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----C
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----T  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----~  379 (489)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|.+...  ........+.+|+.+++.++||||+++++++...     .
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   87 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF--DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN   87 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccc--ccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence            36899999999999999999999999999999999643  2344566788999999999999999999987654     6


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++||||+. ++|.+++...   .+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        88 ~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (353)
T 2b9h_A           88 EVYIIQELMQ-TDLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID  163 (353)
T ss_dssp             CEEEEECCCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             eEEEEEeccC-ccHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence            7999999996 6999999873   48999999999999999999999999999999999999999999999999986432


Q ss_pred             C-------------------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C-------------------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~-------------------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                         +|+       ....+|+|++|++++++++|..||.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  224 (353)
T 2b9h_A          164 ESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFP  224 (353)
T ss_dssp             ----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCC
Confidence            1                         111       1223588999999999999999985

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.95  E-value=4.7e-28  Score=254.37  Aligned_cols=179  Identities=25%  Similarity=0.340  Sum_probs=154.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC------CCCCcceeeEEEEeC
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL------DHPFLPTLYASFQTS  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~~~~~~~  378 (489)
                      ..+|++++.||+|+||.||+|.+..+++.||+|++...    ......+..|+.+++.+      .||||+++++++...
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~  171 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE----KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR  171 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc----cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence            46799999999999999999999999999999999653    23345666788887776      578999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc--EEEEecCCcc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH--VVLTDFDLSF  456 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~--vKL~DFGlS~  456 (489)
                      ..+|+||||+. ++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.  +||+|||+|+
T Consensus       172 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~  250 (429)
T 3kvw_A          172 NHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSC  250 (429)
T ss_dssp             TEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             CeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence            99999999995 69999998876666999999999999999999999999999999999999999887  9999999986


Q ss_pred             ccCCC------------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSCK------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~~------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .....            |+      .....|+|++|++++++++|..||.
T Consensus       251 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~  300 (429)
T 3kvw_A          251 YEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLP  300 (429)
T ss_dssp             ETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCC
Confidence            43311            11      1234589999999999999999985

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.95  E-value=1.8e-28  Score=241.34  Aligned_cols=185  Identities=26%  Similarity=0.358  Sum_probs=147.9

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcC-CC--cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQG-AG--ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-tg--~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      .+..++|++.+.||+|+||.||+|.+.. ++  ..||+|.++..........+.+.+|+.+++.++||||+++++++...
T Consensus        14 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   93 (291)
T 1u46_A           14 LIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP   93 (291)
T ss_dssp             ECCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             ccchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC
Confidence            4456789999999999999999998753 33  36899999766544556678899999999999999999999998776


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      . .++||||+++++|.+++.... ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++...
T Consensus        94 ~-~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  171 (291)
T 1u46_A           94 P-MKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL  171 (291)
T ss_dssp             S-CEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             C-ceeeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccc
Confidence            5 899999999999999998643 34899999999999999999999999999999999999999999999999998654


Q ss_pred             CCC------------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SCK------------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~~------------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ...                  |+      .....|+|++|++++++++ |..||.
T Consensus       172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  226 (291)
T 1u46_A          172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWI  226 (291)
T ss_dssp             CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence            321                  11      1124589999999999998 999985

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.95  E-value=3.6e-28  Score=240.57  Aligned_cols=182  Identities=19%  Similarity=0.213  Sum_probs=150.2

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCC---CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEE-EeCC
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGA---GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASF-QTST  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~t---g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-~~~~  379 (489)
                      ...+|++.+.||+|+||.||+|.+..+   ...+|+|.+...  ........+.+|+.+++.++||||+++++++ ....
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  100 (298)
T 3f66_A           23 SSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG  100 (298)
T ss_dssp             GGEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS
T ss_pred             cceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC--CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCC
Confidence            345799999999999999999997543   346899988653  3455667889999999999999999999985 4556


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++||||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||+|....
T Consensus       101 ~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~  179 (298)
T 3f66_A          101 SPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY  179 (298)
T ss_dssp             CCEEEEECCTTCBHHHHHHCTT-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCS
T ss_pred             ceEEEEeCCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECccccccccc
Confidence            8899999999999999997643 447999999999999999999999999999999999999999999999999996432


Q ss_pred             C-------------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          460 C-------------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ~-------------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .                   +|+      ....+|+|++|++++++++ |..||.
T Consensus       180 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~  234 (298)
T 3f66_A          180 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  234 (298)
T ss_dssp             CGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCc
Confidence            1                   111      1123489999999999999 555553

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.95  E-value=5.4e-28  Score=240.30  Aligned_cols=179  Identities=21%  Similarity=0.216  Sum_probs=152.5

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccc-cchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM-LNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      |...+.||+|+||.||+|.+  +++.||+|.+..... ......+.+.+|+.+++.++||||+++++++......++|||
T Consensus        33 ~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  110 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYV  110 (307)
T ss_dssp             TTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             cccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEE
Confidence            55568999999999999986  478999999875432 233456778899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC----
Q 042772          387 FCPGGELFALLDKQ-PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~-~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~----  461 (489)
                      |+++++|.+++... ....+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++......    
T Consensus       111 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~  190 (307)
T 2nru_A          111 YMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV  190 (307)
T ss_dssp             CCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCE
T ss_pred             ecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeecccccccccccccc
Confidence            99999999999753 2345899999999999999999999999999999999999999999999999998643211    


Q ss_pred             -------------Cc-----eeecccccchHHHHHHHHhCCcccC
Q 042772          462 -------------PQ-----VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -------------~~-----~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   |+     ....+|+|++|++++++++|..||.
T Consensus       191 ~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  235 (307)
T 2nru_A          191 MTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVD  235 (307)
T ss_dssp             ECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBC
T ss_pred             cccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcc
Confidence                         11     1234589999999999999999985

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.95  E-value=4.7e-28  Score=242.52  Aligned_cols=181  Identities=20%  Similarity=0.319  Sum_probs=154.6

Q ss_pred             ccccCcccccccCCCCceEEEEEEE-cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCC------CcceeeEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVEL-QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP------FLPTLYASF  375 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~-~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp------nIv~l~~~~  375 (489)
                      ...++|++.+.||+|+||.||+|.+ ..+++.||+|++...    ......+.+|+.+++.+.|+      +++++++++
T Consensus        11 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~   86 (339)
T 1z57_A           11 VLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV----DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWF   86 (339)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS----HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEE
T ss_pred             CccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC----CchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccc
Confidence            3446899999999999999999998 567899999998643    33456778899998887655      599999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec------------
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK------------  443 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~------------  443 (489)
                      .....+++||||+ +++|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.            
T Consensus        87 ~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~  165 (339)
T 1z57_A           87 EHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIK  165 (339)
T ss_dssp             EETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----
T ss_pred             ccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccc
Confidence            9999999999999 899999998876556899999999999999999999999999999999999987            


Q ss_pred             -------CCcEEEEecCCccccCCC------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          444 -------DGHVVLTDFDLSFMTSCK------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       444 -------~g~vKL~DFGlS~~~~~~------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                             ++.+||+|||++......            |      .....+|+|++|++++++++|..||.
T Consensus       166 ~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  235 (339)
T 1z57_A          166 RDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFP  235 (339)
T ss_dssp             CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence                   678999999998743311            1      11234589999999999999999985

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.95  E-value=5.2e-29  Score=253.67  Aligned_cols=174  Identities=18%  Similarity=0.248  Sum_probs=147.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCC--------CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcce-------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGA--------GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPT-------  370 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~t--------g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~-------  370 (489)
                      ++|++.+.||+|+||.||+|.+..+        ++.||+|.+...        ..+.+|+.+++.++||||++       
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--------~~~~~E~~~l~~l~h~niv~~~~~~~~  113 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--------GRLFNEQNFFQRAAKPLQVNKWKKLYS  113 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--------STHHHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--------chHHHHHHHHHHhcccchhhhhhhhcc
Confidence            6899999999999999999999874        889999998754        34667999999999999887       


Q ss_pred             --------eeEEEEe-CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE
Q 042772          371 --------LYASFQT-STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL  441 (489)
Q Consensus       371 --------l~~~~~~-~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl  441 (489)
                              +++++.. ....|+||||+ +++|.+++.......+++..+..++.||+.||.|||++||+||||||+|||+
T Consensus       114 ~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~  192 (352)
T 2jii_A          114 TPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFV  192 (352)
T ss_dssp             CTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEE
T ss_pred             CCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEE
Confidence                    6677766 67899999999 9999999998644569999999999999999999999999999999999999


Q ss_pred             ecCC--cEEEEecCCccccCC----------------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          442 QKDG--HVVLTDFDLSFMTSC----------------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       442 d~~g--~vKL~DFGlS~~~~~----------------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +.++  .+||+|||+++....                      +|      .....+|+|++|++++++++|..||.
T Consensus       193 ~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  269 (352)
T 2jii_A          193 DPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWT  269 (352)
T ss_dssp             ETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred             cCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            9998  999999999954321                      11      11234589999999999999999985

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.95  E-value=5.1e-28  Score=238.74  Aligned_cols=181  Identities=28%  Similarity=0.393  Sum_probs=156.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||.||+|.+..+++.||+|++...... ......+.+|+.+++.++||||+++++++......++|
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   99 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK-NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBS-SSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccc-hHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence            35799999999999999999999999999999999765432 33456788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC---CcEEEEecCCccccCCC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD---GHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~---g~vKL~DFGlS~~~~~~  461 (489)
                      |||+++++|.+++....  .+++..+..++.|++.||.|||++|++|+||||+||+++.+   +.+||+|||++......
T Consensus       100 ~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~  177 (287)
T 2wei_A          100 GELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN  177 (287)
T ss_dssp             ECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCC
T ss_pred             EEccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCC
Confidence            99999999999987653  48999999999999999999999999999999999999754   47999999998754321


Q ss_pred             C-------------------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 P-------------------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ~-------------------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                   .....+|+|++|++++++++|..||.
T Consensus       178 ~~~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  223 (287)
T 2wei_A          178 TKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFY  223 (287)
T ss_dssp             SSCSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CccccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCC
Confidence            1                   11234599999999999999999985

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.95  E-value=4.2e-28  Score=242.86  Aligned_cols=183  Identities=21%  Similarity=0.320  Sum_probs=151.6

Q ss_pred             cccCcccccccCCCCceEEEEEEEc-CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC---CCCCcceeeEEEE---
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQ-GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFLPTLYASFQ---  376 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~-~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~---  376 (489)
                      ..++|++++.||+|+||.||+|.+. .+++.||+|.+...... ......+.+|+.+++.+   .||||+++++++.   
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   87 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGE-EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   87 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCT-TSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCccc-ccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence            3468999999999999999999995 67899999999754321 11122345577776655   8999999999987   


Q ss_pred             --eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          377 --TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       377 --~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                        .....++||||++ |+|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||+
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~  166 (326)
T 1blx_A           88 TDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGL  166 (326)
T ss_dssp             CSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCS
T ss_pred             cCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCcc
Confidence              4567999999996 6999999887656689999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC--------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          455 SFMTSC--------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       455 S~~~~~--------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +.....              +|+      ....+|+|++|++++++++|..||.
T Consensus       167 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  220 (326)
T 1blx_A          167 ARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFR  220 (326)
T ss_dssp             CCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCC
Confidence            864321              111      1234589999999999999999985

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.95  E-value=4.4e-28  Score=249.16  Aligned_cols=178  Identities=23%  Similarity=0.367  Sum_probs=152.3

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE---
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI---  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~---  381 (489)
                      .++|.+.+.||+|+||.||+|.+..+|+.||+|.+.... ........+.+|+.+++.++||||+++++++......   
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  119 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF-QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  119 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccc-cchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence            368999999999999999999999999999999997643 2445567888999999999999999999999877654   


Q ss_pred             ---EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          382 ---CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       382 ---~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                         |+||||+. ++|.+++..    .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus       120 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~  194 (371)
T 4exu_A          120 YDFYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHA  194 (371)
T ss_dssp             CCCEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC---
T ss_pred             eeEEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCccccc
Confidence               99999996 689888743    3899999999999999999999999999999999999999999999999998643


Q ss_pred             CC------------CC-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC------------KP-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~------------~~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..            +|       .....+|+|++|++++++++|..||.
T Consensus       195 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  243 (371)
T 4exu_A          195 DAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFK  243 (371)
T ss_dssp             -----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCC
Confidence            21            11       12234589999999999999999985

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.95  E-value=2.1e-28  Score=264.23  Aligned_cols=182  Identities=24%  Similarity=0.338  Sum_probs=155.7

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..+..++|++.+.||+|+||.||+|.+.. +..||+|+++....    ..+.+.+|+.+|+.++||||+++++++.. ..
T Consensus       262 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~  335 (535)
T 2h8h_A          262 WEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP  335 (535)
T ss_dssp             SBCCGGGEEEEEEEEECSSEEEEEEEETT-TEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             eecchhhhhhheecccCCCeEEEEEEECC-CceEEEEEeCCCCC----CHHHHHHHHHHHHhCCCCCEeeEEEEEee-cc
Confidence            45667889999999999999999999886 46799999976432    23568889999999999999999998866 67


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+||||+++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....
T Consensus       336 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  415 (535)
T 2h8h_A          336 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED  415 (535)
T ss_dssp             CEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCC
T ss_pred             ceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCC
Confidence            89999999999999999764334589999999999999999999999999999999999999999999999999975421


Q ss_pred             ----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                      +|+      ....+|+|++|++++|+++ |..||.
T Consensus       416 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~  466 (535)
T 2h8h_A          416 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  466 (535)
T ss_dssp             HHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSST
T ss_pred             CceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                            111      1124589999999999998 999985

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.95  E-value=3.6e-28  Score=246.95  Aligned_cols=181  Identities=19%  Similarity=0.200  Sum_probs=146.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcC---CCcEEEEEEeecccccchH--------HHHHHHHHHHHHHhCCCCCcceeeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQG---AGELYAMKAMEKSVMLNRN--------KVHRACIEREIMSLLDHPFLPTLYA  373 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~---tg~~vAiK~i~~~~~~~~~--------~~~~~~~E~~il~~l~HpnIv~l~~  373 (489)
                      .++|++.+.||+|+||.||+|.+..   ++..+|+|.+.........        ....+..|+.+++.++||||+++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            4689999999999999999999987   7889999998764321111        1123557888899999999999999


Q ss_pred             EEEe----CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC--cE
Q 042772          374 SFQT----STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG--HV  447 (489)
Q Consensus       374 ~~~~----~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g--~v  447 (489)
                      ++..    ....|+||||+ +++|.+++....  .+++..+..++.||+.||.|||++||+||||||+|||++.++  .+
T Consensus       116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~  192 (345)
T 2v62_A          116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQV  192 (345)
T ss_dssp             EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSE
T ss_pred             ccccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcE
Confidence            9988    67899999999 999999998754  589999999999999999999999999999999999999887  99


Q ss_pred             EEEecCCccccC-----------------C-----CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          448 VLTDFDLSFMTS-----------------C-----KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       448 KL~DFGlS~~~~-----------------~-----~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ||+|||+|+...                 .     +|+      ....+|+|++|++++++++|..||.
T Consensus       193 kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~  261 (345)
T 2v62_A          193 YLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWE  261 (345)
T ss_dssp             EECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTG
T ss_pred             EEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            999999995431                 0     111      1234589999999999999999993

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.95  E-value=4.6e-28  Score=266.87  Aligned_cols=173  Identities=21%  Similarity=0.334  Sum_probs=147.8

Q ss_pred             cccCCCCceEEEEEEE--cCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCC
Q 042772          312 KPLGCGDTGSVHLVEL--QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~--~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      +.||+|+||.||+|.+  +.+++.||+|+++... ......+.+.+|+.+++.++||||+++++++.. ...++||||++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~  452 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAE  452 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGG-GCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccC
Confidence            4799999999999965  4567899999997653 234456788999999999999999999999865 45899999999


Q ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC--------
Q 042772          390 GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK--------  461 (489)
Q Consensus       390 ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~--------  461 (489)
                      +|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+.....        
T Consensus       453 ~g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~  530 (635)
T 4fl3_A          453 LGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT  530 (635)
T ss_dssp             TEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---------
T ss_pred             CCCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccccccc
Confidence            99999999875  34899999999999999999999999999999999999999999999999998644211        


Q ss_pred             ----------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          462 ----------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       462 ----------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                |+      ....+|+|++|++++|+++ |..||.
T Consensus       531 ~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~  574 (635)
T 4fl3_A          531 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYR  574 (635)
T ss_dssp             ----CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             CCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                      11      1124489999999999997 999995

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.95  E-value=1.4e-27  Score=235.24  Aligned_cols=176  Identities=19%  Similarity=0.265  Sum_probs=145.8

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEE-EeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASF-QTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-~~~~~~~lV  384 (489)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++.....     ...+..|..+++.+.|++++..+..+ ......++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (296)
T 4hgt_A            9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   83 (296)
T ss_dssp             --CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC--------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred             CceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-----chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence            579999999999999999999999999999998765422     23467799999999887766655544 677889999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE---ecCCcEEEEecCCccccCCC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDGHVVLTDFDLSFMTSCK  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl---d~~g~vKL~DFGlS~~~~~~  461 (489)
                      |||+ +++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||+   +.++.+||+|||++......
T Consensus        84 ~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  161 (296)
T 4hgt_A           84 MELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             EECC-CCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             EEcc-CCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCc
Confidence            9999 999999998643 348999999999999999999999999999999999999   78999999999999643211


Q ss_pred             ----------------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 ----------------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ----------------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                            |      .....+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  216 (296)
T 4hgt_A          162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ  216 (296)
T ss_dssp             TTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             ccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCc
Confidence                                  0      11124499999999999999999995

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.95  E-value=5.6e-28  Score=245.89  Aligned_cols=178  Identities=23%  Similarity=0.365  Sum_probs=152.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH----  380 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~----  380 (489)
                      .++|.+.+.||+|+||.||+|.++.+|+.||+|.+.... ........+.+|+.+++.++||||+++++++.....    
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  101 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF-QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  101 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccc-cchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence            367999999999999999999999999999999997543 244456778899999999999999999999987653    


Q ss_pred             --EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          381 --ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       381 --~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                        .|+||||+. ++|.+++..    .+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++...
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  176 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHA  176 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-
T ss_pred             eeEEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCC
Confidence              599999996 688887743    3899999999999999999999999999999999999999999999999998643


Q ss_pred             CC------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..            +|+       ....+|+|++|++++++++|..||.
T Consensus       177 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~  225 (353)
T 3coi_A          177 DAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFK  225 (353)
T ss_dssp             -------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSB
T ss_pred             CCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            21            111       2234599999999999999999985

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.95  E-value=9e-28  Score=244.70  Aligned_cols=181  Identities=19%  Similarity=0.297  Sum_probs=150.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccc--------cchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM--------LNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~--------~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      .++|++.+.||+|+||.||+|.+.. |+.||+|.+.....        ......+.+.+|+.+++.++||||+++++++.
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   99 (362)
T 3pg1_A           21 QSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFV   99 (362)
T ss_dssp             TCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEE
T ss_pred             ccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEE
Confidence            4679999999999999999999865 89999999865322        12334578899999999999999999999985


Q ss_pred             e-----CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEe
Q 042772          377 T-----STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTD  451 (489)
Q Consensus       377 ~-----~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~D  451 (489)
                      .     ...+|+||||++ |+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|
T Consensus       100 ~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~D  177 (362)
T 3pg1_A          100 HFEEPAMHKLYLVTELMR-TDLAQVIHDQR-IVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICD  177 (362)
T ss_dssp             ECCTTTCCEEEEEEECCS-EEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC
T ss_pred             eccCCCcceEEEEEccCC-CCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEEEEe
Confidence            4     346899999996 69999887653 4589999999999999999999999999999999999999999999999


Q ss_pred             cCCccccC--------------CCCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          452 FDLSFMTS--------------CKPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       452 FGlS~~~~--------------~~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ||++....              .+|+       ....+|+|++|++++++++|..||.
T Consensus       178 fg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  235 (362)
T 3pg1_A          178 FNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFR  235 (362)
T ss_dssp             TTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCC
Confidence            99986322              1121       2233589999999999999999985

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.95  E-value=5.5e-28  Score=253.10  Aligned_cols=176  Identities=25%  Similarity=0.336  Sum_probs=144.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS------  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~------  378 (489)
                      ..+|++.+.||+|+||.||+|.+..+|+.||+|.+.....       ...+|+++++.++||||++++++|...      
T Consensus        53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~-------~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~  125 (420)
T 1j1b_A           53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDE  125 (420)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT-------SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTE
T ss_pred             cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch-------hHHHHHHHHHHcCCCCccceeeEEeccCCCCcc
Confidence            3479999999999999999999999999999999865421       123599999999999999999988542      


Q ss_pred             CeEEEEEecCCCCCHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-CcEEEEecCCc
Q 042772          379 THICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-GHVVLTDFDLS  455 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~--~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-g~vKL~DFGlS  455 (489)
                      .++++||||+++ +|.+.+..  .....+++..+..++.||+.||.|||++||+||||||+|||++.+ +.+||+|||++
T Consensus       126 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a  204 (420)
T 1j1b_A          126 VYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA  204 (420)
T ss_dssp             EEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             eeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhh
Confidence            247899999965 77776653  123458999999999999999999999999999999999999955 67899999999


Q ss_pred             cccCC--------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSC--------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~--------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +....              +|+       +....|+|++|++++||++|..||.
T Consensus       205 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~  258 (420)
T 1j1b_A          205 KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP  258 (420)
T ss_dssp             EECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             hhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCC
Confidence            74321              111       2234499999999999999999985

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.95  E-value=1.7e-27  Score=239.37  Aligned_cols=184  Identities=22%  Similarity=0.353  Sum_probs=151.2

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHH-HHHhCCCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE-IMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      .+..++|++++.||+|+||.||+|.++.+|+.||+|.+....  .......+..|.. +++.++||||+++++++...+.
T Consensus        18 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~   95 (327)
T 3aln_A           18 DFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV--DEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGD   95 (327)
T ss_dssp             CCCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC--CHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSE
T ss_pred             ccCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc--CchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCc
Confidence            455678999999999999999999999999999999997642  2333445555665 6777899999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhh---CCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          381 ICLITDFCPGGELFALLDK---QPMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~---~~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      .++||||+++ +|.+++..   .....+++..+..++.|++.||.|||++ ||+||||||+|||++.++.+||+|||++.
T Consensus        96 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  174 (327)
T 3aln_A           96 CWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISG  174 (327)
T ss_dssp             EEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSC
T ss_pred             eEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCce
Confidence            9999999964 88888763   2235589999999999999999999998 99999999999999999999999999986


Q ss_pred             ccC--------------CCCcee----------ecccccchHHHHHHHHhCCcccC
Q 042772          457 MTS--------------CKPQVF----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~--------------~~~~~~----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              .+|+..          ..+|+|++|++++++++|..||.
T Consensus       175 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  230 (327)
T 3aln_A          175 QLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYP  230 (327)
T ss_dssp             C------------------------------CCSHHHHHHHHHHHHHHHHSCCCSS
T ss_pred             ecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            432              123322          24589999999999999999985

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.3e-28  Score=245.51  Aligned_cols=184  Identities=22%  Similarity=0.315  Sum_probs=147.5

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch---HHHHHHHHHHHHHHhC----CCCCcceeeEEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR---NKVHRACIEREIMSLL----DHPFLPTLYASF  375 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l----~HpnIv~l~~~~  375 (489)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|.+........   .....+..|+.++..+    +||||+++++++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~  107 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF  107 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence            335689999999999999999999999999999999976533221   1223455688888888    899999999999


Q ss_pred             EeCCeEEEEEec-CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe-cCCcEEEEecC
Q 042772          376 QTSTHICLITDF-CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-KDGHVVLTDFD  453 (489)
Q Consensus       376 ~~~~~~~lVmEy-~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld-~~g~vKL~DFG  453 (489)
                      ......++|||+ +.+++|.+++...  ..+++..+..++.||+.||.|||++||+||||||+||+++ .++.+||+|||
T Consensus       108 ~~~~~~~~v~e~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg  185 (312)
T 2iwi_A          108 ETQEGFMLVLERPLPAQDLFDYITEK--GPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFG  185 (312)
T ss_dssp             -----CEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCS
T ss_pred             ecCCeEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcc
Confidence            999999999999 7899999999875  3489999999999999999999999999999999999999 88999999999


Q ss_pred             CccccCCC-------------Cce-------eecccccchHHHHHHHHhCCcccC
Q 042772          454 LSFMTSCK-------------PQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       454 lS~~~~~~-------------~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ++......             |+.       ...+|+|++|++++++++|..||.
T Consensus       186 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  240 (312)
T 2iwi_A          186 SGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFE  240 (312)
T ss_dssp             SCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             hhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCC
Confidence            98754321             111       124689999999999999999985

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.95  E-value=3.8e-28  Score=244.47  Aligned_cols=176  Identities=24%  Similarity=0.352  Sum_probs=143.4

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHH--HhCCCCCcceeeEEEEe--
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIM--SLLDHPFLPTLYASFQT--  377 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il--~~l~HpnIv~l~~~~~~--  377 (489)
                      .+..++|++.+.||+|+||.||+|.+  +++.||+|++....      ...+..|.+++  ..++||||+++++.+..  
T Consensus         9 ~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~   80 (336)
T 3g2f_A            9 SLDLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFAN------RQNFINEKNIYRVPLMEHDNIARFIVGDERVT   80 (336)
T ss_dssp             CCCTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC
T ss_pred             CcChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccc------hhhHHHHHHHHHHHhccCcchhhheecccccc
Confidence            45668899999999999999999976  58999999996542      23334455554  45899999999986543  


Q ss_pred             ---CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---------CCeecCCCCCCEEEecCC
Q 042772          378 ---STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL---------GIIYRDLKPENILLQKDG  445 (489)
Q Consensus       378 ---~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~---------gIvHrDLKP~NILld~~g  445 (489)
                         ...+++||||+++|+|.+++....   .++..+..++.||+.||.|||++         ||+||||||+|||++.++
T Consensus        81 ~~~~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~  157 (336)
T 3g2f_A           81 ADGRMEYLLVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDG  157 (336)
T ss_dssp             TTSCEEEEEEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTS
T ss_pred             cCCCceEEEEEecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCC
Confidence               236899999999999999998753   58899999999999999999999         999999999999999999


Q ss_pred             cEEEEecCCccccCC-----------------------CCcee-------------ecccccchHHHHHHHHhCCcccC
Q 042772          446 HVVLTDFDLSFMTSC-----------------------KPQVF-------------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       446 ~vKL~DFGlS~~~~~-----------------------~~~~~-------------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .+||+|||+|.....                       +|+..             ..+|+|++|++++++++|..||-
T Consensus       158 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~  236 (336)
T 3g2f_A          158 TCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLF  236 (336)
T ss_dssp             CEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGS
T ss_pred             cEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCC
Confidence            999999999964321                       12221             13489999999999999987763

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.95  E-value=1.5e-27  Score=240.66  Aligned_cols=180  Identities=20%  Similarity=0.305  Sum_probs=153.5

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCC-cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCC------cceeeEEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAG-ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF------LPTLYASFQ  376 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg-~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~l~~~~~  376 (489)
                      ..++|++.+.||+|+||.||+|.+..++ +.||+|++...    ......+..|+.+++.+.|++      ++.+++++.
T Consensus        17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~   92 (355)
T 2eu9_A           17 LQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV----GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFN   92 (355)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEE
T ss_pred             ecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc----ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeee
Confidence            3468999999999999999999998777 79999999643    234566778999998887655      899999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE---------------
Q 042772          377 TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---------------  441 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl---------------  441 (489)
                      .....|+||||+ +++|.+++.......+++..+..++.||+.||.|||++||+||||||+|||+               
T Consensus        93 ~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~  171 (355)
T 2eu9_A           93 FHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSC  171 (355)
T ss_dssp             ETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred             eCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccc
Confidence            999999999999 7788888887665669999999999999999999999999999999999999               


Q ss_pred             ----ecCCcEEEEecCCccccCCC------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          442 ----QKDGHVVLTDFDLSFMTSCK------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       442 ----d~~g~vKL~DFGlS~~~~~~------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          +.++.+||+|||++......            |      .....+|+|++|++++++++|..||.
T Consensus       172 ~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  240 (355)
T 2eu9_A          172 EEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQ  240 (355)
T ss_dssp             CEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCC
Confidence                67889999999999643211            1      11234589999999999999999985

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1.3e-27  Score=239.98  Aligned_cols=169  Identities=27%  Similarity=0.359  Sum_probs=141.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC--CCCCcceeeEEEEeC----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL--DHPFLPTLYASFQTS----  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l--~HpnIv~l~~~~~~~----  378 (489)
                      .++|++.+.||+|+||.||+|.+.  ++.||+|++....      ......|.+++..+  +||||+++++++...    
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~  107 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTE------EASWFRETEIYQTVLMRHENILGFIAADIKGTGSW  107 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG
T ss_pred             ccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEeccc------cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC
Confidence            357999999999999999999876  8999999986431      23344566666554  899999999999887    


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC--------CCeecCCCCCCEEEecCCcEEEE
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL--------GIIYRDLKPENILLQKDGHVVLT  450 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~--------gIvHrDLKP~NILld~~g~vKL~  450 (489)
                      ..+++||||+++|+|.+++...   .+++..+..++.|++.||.|||++        ||+||||||+|||++.++.+||+
T Consensus       108 ~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~  184 (337)
T 3mdy_A          108 TQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIA  184 (337)
T ss_dssp             CEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred             CceEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEE
Confidence            7899999999999999999874   489999999999999999999998        99999999999999999999999


Q ss_pred             ecCCccccCC-------------------CCcee------e------cccccchHHHHHHHHhCC
Q 042772          451 DFDLSFMTSC-------------------KPQVF------Y------HAHVNGFYFIMYKWLTGY  484 (489)
Q Consensus       451 DFGlS~~~~~-------------------~~~~~------~------~~~v~s~g~~a~e~~~G~  484 (489)
                      |||+|.....                   +|+..      .      .+|+|++|++++++++|.
T Consensus       185 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~  249 (337)
T 3mdy_A          185 DLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRC  249 (337)
T ss_dssp             CCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             eCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhcc
Confidence            9999853211                   11111      1      169999999999999993

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.95  E-value=2.4e-27  Score=233.84  Aligned_cols=177  Identities=19%  Similarity=0.256  Sum_probs=148.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEE-EeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASF-QTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-~~~~~~~l  383 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++......     ..+..|+.+++.+.|++++..+..+ ......++
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l   82 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   82 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC-----CHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch-----hHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence            36799999999999999999999999999999998654321     3467899999999988766555544 66778999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE---ecCCcEEEEecCCccccCC
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl---d~~g~vKL~DFGlS~~~~~  460 (489)
                      ||||+ +++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||+   +.++.+||+|||++.....
T Consensus        83 v~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  160 (296)
T 3uzp_A           83 VMELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  160 (296)
T ss_dssp             EEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             EEEec-CCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence            99999 999999998543 358999999999999999999999999999999999999   4889999999999864322


Q ss_pred             C----------------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 K----------------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ~----------------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                      |      .....+|+|++|++++++++|..||.
T Consensus       161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  216 (296)
T 3uzp_A          161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ  216 (296)
T ss_dssp             TTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             cccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence            1                      1      11124499999999999999999985

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.95  E-value=4.6e-28  Score=243.64  Aligned_cols=184  Identities=22%  Similarity=0.259  Sum_probs=155.7

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch---HHHHHHHHHHHHHHhCC--CCCcceeeEEEEe
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR---NKVHRACIEREIMSLLD--HPFLPTLYASFQT  377 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~--HpnIv~l~~~~~~  377 (489)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|.+........   .....+..|+.+++.+.  ||||+++++++..
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~  119 (320)
T 3a99_A           40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER  119 (320)
T ss_dssp             CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred             CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence            345689999999999999999999999999999999976543221   12234567899999986  5999999999999


Q ss_pred             CCeEEEEEecCCC-CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe-cCCcEEEEecCCc
Q 042772          378 STHICLITDFCPG-GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-KDGHVVLTDFDLS  455 (489)
Q Consensus       378 ~~~~~lVmEy~~g-gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld-~~g~vKL~DFGlS  455 (489)
                      ....++|||++.+ ++|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++
T Consensus       120 ~~~~~lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~  197 (320)
T 3a99_A          120 PDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSG  197 (320)
T ss_dssp             SSEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             CCcEEEEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCccc
Confidence            9999999999976 8999999875  3489999999999999999999999999999999999999 7899999999998


Q ss_pred             cccCCC-------------Cce-------eecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSCK-------------PQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~~-------------~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ......             |+.       ....|+|++|++++++++|..||.
T Consensus       198 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~  250 (320)
T 3a99_A          198 ALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFE  250 (320)
T ss_dssp             EECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCC
Confidence            654321             111       123499999999999999999985

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.95  E-value=6.5e-28  Score=245.94  Aligned_cols=182  Identities=20%  Similarity=0.305  Sum_probs=153.6

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-----------CCCcce
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-----------HPFLPT  370 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-----------HpnIv~  370 (489)
                      .+..++|++.+.||+|+||.||+|.+..+++.||+|++...    ......+..|+.+++.+.           ||||++
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~   90 (373)
T 1q8y_A           15 PYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD----KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILK   90 (373)
T ss_dssp             EETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCC
T ss_pred             cccCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC----ccchhhhhHHHHHHHHhhcccccchhccccchHHH
Confidence            44567899999999999999999999999999999999743    233456778888888775           899999


Q ss_pred             eeEEEEeCC----eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecC-
Q 042772          371 LYASFQTST----HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKD-  444 (489)
Q Consensus       371 l~~~~~~~~----~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~-  444 (489)
                      +++++....    .++++|||+ +++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+|||++.+ 
T Consensus        91 ~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~  169 (373)
T 1q8y_A           91 LLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVD  169 (373)
T ss_dssp             CCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEE
T ss_pred             HHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccC
Confidence            999998654    799999999 89999999886556689999999999999999999998 99999999999999543 


Q ss_pred             -----CcEEEEecCCccccCC------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          445 -----GHVVLTDFDLSFMTSC------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       445 -----g~vKL~DFGlS~~~~~------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                           +.+||+|||+|.....            +|+      ....+|+|++|++++++++|..||.
T Consensus       170 ~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  236 (373)
T 1q8y_A          170 SPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFE  236 (373)
T ss_dssp             TTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC-
T ss_pred             CCcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence                 4899999999864331            111      1234599999999999999999995

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=6.4e-28  Score=249.02  Aligned_cols=180  Identities=18%  Similarity=0.210  Sum_probs=145.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCC---cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE-eCCeE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAG---ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ-TSTHI  381 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg---~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-~~~~~  381 (489)
                      ..|++.+.||+|+||.||+|.+..++   ..||+|.++..  ........+.+|+.+++.++||||+++++++. ..+..
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~  166 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP  166 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC--SCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCC
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCe
Confidence            35888999999999999999976432   46899988643  34456778899999999999999999999865 45688


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      ++||||+++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.... 
T Consensus       167 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~  245 (373)
T 3c1x_A          167 LVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  245 (373)
T ss_dssp             EEEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             EEEEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccccccc
Confidence            99999999999999997653 3478999999999999999999999999999999999999999999999999964321 


Q ss_pred             ------------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ------------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ------------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                        +|+      ....+|+|++|++++++++ |..||.
T Consensus       246 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~  298 (373)
T 3c1x_A          246 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  298 (373)
T ss_dssp             ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCT
T ss_pred             ccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence                              111      1123489999999999999 777774

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=238.90  Aligned_cols=177  Identities=23%  Similarity=0.401  Sum_probs=147.4

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++.+.||+|+||.||+|.+.  ++.||+|.+...     ...+.+.+|+.+++.++||||+++++++.+  ..+
T Consensus         5 i~~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~   75 (307)
T 2eva_A            5 IDYKEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIESE-----SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVC   75 (307)
T ss_dssp             CCGGGEEEEEEEECCSSSEEEEEEET--TEEEEEEECSST-----THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTE
T ss_pred             CCHhHeeeeeEeecCCCceEEEEEEC--CeeEEEEEecCh-----hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcE
Confidence            45678999999999999999999875  788999998532     345678889999999999999999998764  479


Q ss_pred             EEEecCCCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCCCCEEEecCCc-EEEEecCCccc
Q 042772          383 LITDFCPGGELFALLDKQPM-KIFREDSARFYAAEVVIGLEYLHC---LGIIYRDLKPENILLQKDGH-VVLTDFDLSFM  457 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~-~~l~e~~~~~i~~qI~~aL~yLH~---~gIvHrDLKP~NILld~~g~-vKL~DFGlS~~  457 (489)
                      +||||+++|+|.+++..... ..+++..+..++.|++.||.|||+   +||+||||||+|||++.++. +||+|||++..
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~  155 (307)
T 2eva_A           76 LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACD  155 (307)
T ss_dssp             EEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---
T ss_pred             EEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccc
Confidence            99999999999999986532 237889999999999999999999   89999999999999998886 79999999864


Q ss_pred             cCC------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...            +|      .....+|+|++|.+++++++|..||.
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~  204 (307)
T 2eva_A          156 IQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFD  204 (307)
T ss_dssp             ---------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTT
T ss_pred             cccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCch
Confidence            321            11      12234599999999999999999985

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.95  E-value=2.1e-29  Score=254.70  Aligned_cols=151  Identities=19%  Similarity=0.173  Sum_probs=126.6

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-----chHHHHHHHHHHHHHHhCC---------CCCcc
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-----NRNKVHRACIEREIMSLLD---------HPFLP  369 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-----~~~~~~~~~~E~~il~~l~---------HpnIv  369 (489)
                      ..++|++.+.||+|+||+||+|.+  +|+.||+|.+......     .....+.+.+|+.+++.++         ||||+
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv   95 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFI   95 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBC
T ss_pred             ccccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchh
Confidence            346899999999999999999998  5899999999865321     2233467888999988875         77777


Q ss_pred             eeeEEEE-----------------e-------------CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 042772          370 TLYASFQ-----------------T-------------STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI  419 (489)
Q Consensus       370 ~l~~~~~-----------------~-------------~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~  419 (489)
                      ++.+.+.                 +             ...+|+||||+++|++.+.+.+   ..+++..++.++.||+.
T Consensus        96 ~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~  172 (336)
T 2vuw_A           96 GLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTA  172 (336)
T ss_dssp             CEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHH
T ss_pred             hhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHH
Confidence            7766542                 2             6789999999999987777754   34899999999999999


Q ss_pred             HHHHHH-HCCCeecCCCCCCEEEecCC--------------------cEEEEecCCccccC
Q 042772          420 GLEYLH-CLGIIYRDLKPENILLQKDG--------------------HVVLTDFDLSFMTS  459 (489)
Q Consensus       420 aL~yLH-~~gIvHrDLKP~NILld~~g--------------------~vKL~DFGlS~~~~  459 (489)
                      ||.||| ++||+||||||+|||++.++                    .+||+|||+|+...
T Consensus       173 aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~  233 (336)
T 2vuw_A          173 SLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLER  233 (336)
T ss_dssp             HHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEE
T ss_pred             HHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecC
Confidence            999999 99999999999999999987                    99999999997543

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.95  E-value=1.4e-27  Score=242.61  Aligned_cols=180  Identities=19%  Similarity=0.278  Sum_probs=137.5

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC----
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST----  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----  379 (489)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+......    ......++..+..++||||++++++|....    
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~   96 (360)
T 3e3p_A           21 EMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF----RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR   96 (360)
T ss_dssp             HHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC----CCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCT
T ss_pred             hccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc----cHHHHHHHHHHHhcCCCCcccHHHhhhccccccc
Confidence            456899999999999999999999999999999998654322    234556777888899999999999987643    


Q ss_pred             ---eEEEEEecCCCCCHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHH--HCCCeecCCCCCCEEEec-CCcEEEEe
Q 042772          380 ---HICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEYLH--CLGIIYRDLKPENILLQK-DGHVVLTD  451 (489)
Q Consensus       380 ---~~~lVmEy~~ggsL~~~L~~--~~~~~l~e~~~~~i~~qI~~aL~yLH--~~gIvHrDLKP~NILld~-~g~vKL~D  451 (489)
                         .+++||||+++ +|...+..  .....+++..+..++.|++.||.|||  ++||+||||||+|||++. ++.+||+|
T Consensus        97 ~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~D  175 (360)
T 3e3p_A           97 RDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCD  175 (360)
T ss_dssp             TCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECC
T ss_pred             cceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEee
Confidence               38999999975 66555442  23345899999999999999999999  999999999999999996 89999999


Q ss_pred             cCCccccCC--------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          452 FDLSFMTSC--------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       452 FGlS~~~~~--------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ||+|.....              +|+       ....+|+|++|++++++++|..||.
T Consensus       176 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~  233 (360)
T 3e3p_A          176 FGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFR  233 (360)
T ss_dssp             CTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcC
Confidence            999964321              111       2234589999999999999999985

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.95  E-value=1.8e-27  Score=241.35  Aligned_cols=177  Identities=24%  Similarity=0.368  Sum_probs=143.9

Q ss_pred             ccCccccc-ccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe----CC
Q 042772          305 LHHFKPIK-PLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT----ST  379 (489)
Q Consensus       305 ~~~y~~~~-~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----~~  379 (489)
                      .++|++.+ .||+|+||.||+|.++.+++.||+|++....    ....   .....++.+.||||+++++++..    ..
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~---e~~~~~~~~~h~~i~~~~~~~~~~~~~~~   99 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQ---EVDHHWQASGGPHIVCILDVYENMHHGKR   99 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHH---HHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHH---HHHHHHHhcCCCChHHHHHHHhhccCCCc
Confidence            46799965 6999999999999999999999999986531    1111   22334667799999999999876    45


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEEEEecCCcc
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLSF  456 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vKL~DFGlS~  456 (489)
                      .+++||||+++|+|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||++.
T Consensus       100 ~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~  179 (336)
T 3fhr_A          100 CLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK  179 (336)
T ss_dssp             EEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             eEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccce
Confidence            6899999999999999999876567999999999999999999999999999999999999976   4569999999996


Q ss_pred             ccCC-------------CCcee------ecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSC-------------KPQVF------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~-------------~~~~~------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....             +|+..      ..+|+|++|++++++++|..||.
T Consensus       180 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  230 (336)
T 3fhr_A          180 ETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFY  230 (336)
T ss_dssp             EC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred             eccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            4331             12222      23489999999999999999984

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=248.24  Aligned_cols=177  Identities=22%  Similarity=0.336  Sum_probs=139.0

Q ss_pred             cCccc-ccccCCCCceEEEEEEEc--CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--CCe
Q 042772          306 HHFKP-IKPLGCGDTGSVHLVELQ--GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--STH  380 (489)
Q Consensus       306 ~~y~~-~~~LG~G~fG~Vy~a~~~--~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~  380 (489)
                      +.|++ .+.||+|+||.||+|.++  .+++.||+|.+.....     ...+.+|+.+++.++||||+++++++..  ...
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   94 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-----SMSACREIALLRELKHPNVISLQKVFLSHADRK   94 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-----CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-----CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence            34666 457999999999999976  5688999999975422     2356789999999999999999999954  678


Q ss_pred             EEEEEecCCCCCHHHHHhhC-------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE----ecCCcEEE
Q 042772          381 ICLITDFCPGGELFALLDKQ-------PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL----QKDGHVVL  449 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~-------~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl----d~~g~vKL  449 (489)
                      +|+||||+. |+|.+++...       ....+++..++.++.||+.||.|||++||+||||||+|||+    +.++.+||
T Consensus        95 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl  173 (405)
T 3rgf_A           95 VWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKI  173 (405)
T ss_dssp             EEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred             EEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEE
Confidence            999999995 6898888632       12248999999999999999999999999999999999999    67789999


Q ss_pred             EecCCccccCC------------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          450 TDFDLSFMTSC------------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       450 ~DFGlS~~~~~------------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +|||+|+....                  +|+       .....|+|++|++++++++|..||.
T Consensus       174 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  237 (405)
T 3rgf_A          174 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH  237 (405)
T ss_dssp             CCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             EECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCC
Confidence            99999964321                  111       2234589999999999999999984

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.95  E-value=1.4e-27  Score=247.87  Aligned_cols=176  Identities=22%  Similarity=0.350  Sum_probs=142.2

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC----
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST----  379 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----  379 (489)
                      ...+|++.+.||+|+||.||+|.+..+++ +|+|.+......       ..+|+.+++.++||||++++++|....    
T Consensus        38 ~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~~-------~~~E~~il~~l~h~niv~l~~~~~~~~~~~~  109 (394)
T 4e7w_A           38 REIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKRF-------KNRELQIMRIVKHPNVVDLKAFFYSNGDKKD  109 (394)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTTS-------CCHHHHHHHTCCCTTBCCEEEEEEEESSSSS
T ss_pred             ccceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcch-------HHHHHHHHHhCCCCCcceEEEEEEecCCCCC
Confidence            34679999999999999999999987666 788877543211       125999999999999999999986543    


Q ss_pred             --eEEEEEecCCCCCHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe-cCCcEEEEecCC
Q 042772          380 --HICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ-KDGHVVLTDFDL  454 (489)
Q Consensus       380 --~~~lVmEy~~ggsL~~~L~~--~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld-~~g~vKL~DFGl  454 (489)
                        .+++||||+++ ++...+..  .....+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||+
T Consensus       110 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~  188 (394)
T 4e7w_A          110 EVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGS  188 (394)
T ss_dssp             CEEEEEEEECCSE-EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             ceEEEEEeeccCc-cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence              38999999976 55444432  1234589999999999999999999999999999999999999 799999999999


Q ss_pred             ccccCC--------------CC-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          455 SFMTSC--------------KP-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       455 S~~~~~--------------~~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      |+....              +|       ......|+|++|++++++++|..||.
T Consensus       189 a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  243 (394)
T 4e7w_A          189 AKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFP  243 (394)
T ss_dssp             CEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            964321              11       12234589999999999999999985

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=236.88  Aligned_cols=186  Identities=23%  Similarity=0.332  Sum_probs=145.0

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ......++|++++.||+|+||.||+|.++.+|+.||+|.+..... .......+..+..+++.++||||+++++++....
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~   97 (318)
T 2dyl_A           19 RYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN-KEENKRILMDLDVVLKSHDCPYIVQCFGTFITNT   97 (318)
T ss_dssp             EEECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSC-HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             hhhhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEeccccc-chHHHHHHHHHHHHHHhcCCCceeeEEEEEecCC
Confidence            344567889999999999999999999999999999999976532 2223334444555688889999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL-GIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~-gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      .+++||||+ ++.+..+.... ...+++..+..++.|++.||.|||++ ||+||||||+||+++.++.+||+|||++...
T Consensus        98 ~~~lv~e~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  175 (318)
T 2dyl_A           98 DVFIAMELM-GTCAEKLKKRM-QGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRL  175 (318)
T ss_dssp             EEEEEECCC-SEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC---
T ss_pred             cEEEEEecc-CCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhc
Confidence            999999999 55666655542 24589999999999999999999995 9999999999999999999999999998543


Q ss_pred             C--------------CCCce-----------eecccccchHHHHHHHHhCCcccC
Q 042772          459 S--------------CKPQV-----------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~--------------~~~~~-----------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .              .+|+.           ....|+|++|++++++++|..||.
T Consensus       176 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  230 (318)
T 2dyl_A          176 VDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYK  230 (318)
T ss_dssp             -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCC
Confidence            2              11222           124599999999999999999985

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.95  E-value=2.5e-27  Score=238.72  Aligned_cols=167  Identities=24%  Similarity=0.344  Sum_probs=144.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHh--CCCCCcceeeEEEEeCC----
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLPTLYASFQTST----  379 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~~~~----  379 (489)
                      ++|++.+.||+|+||.||+|.+.  ++.||+|.+...      ....+..|.+++..  ++||||+++++++....    
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~  113 (342)
T 1b6c_B           42 RTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSR------EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT  113 (342)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEET--TEEEEEEEECGG------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCC
T ss_pred             ccEEEEeeecCCCCcEEEEEEEc--CccEEEEEeCch------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccc
Confidence            57999999999999999999984  899999998643      23456778888887  78999999999998775    


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH--------HCCCeecCCCCCCEEEecCCcEEEEe
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH--------CLGIIYRDLKPENILLQKDGHVVLTD  451 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH--------~~gIvHrDLKP~NILld~~g~vKL~D  451 (489)
                      ..++||||+++|+|.+++...   .+++..+..++.|++.||.|||        ++||+||||||+|||++.++.+||+|
T Consensus       114 ~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~D  190 (342)
T 1b6c_B          114 QLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD  190 (342)
T ss_dssp             CEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECC
T ss_pred             eeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEE
Confidence            899999999999999999874   3899999999999999999999        89999999999999999999999999


Q ss_pred             cCCccccCC-------------------CCcee------------ecccccchHHHHHHHHhC
Q 042772          452 FDLSFMTSC-------------------KPQVF------------YHAHVNGFYFIMYKWLTG  483 (489)
Q Consensus       452 FGlS~~~~~-------------------~~~~~------------~~~~v~s~g~~a~e~~~G  483 (489)
                      ||++.....                   +|+..            ..+|+|++|++++++++|
T Consensus       191 fg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg  253 (342)
T 1b6c_B          191 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARR  253 (342)
T ss_dssp             CTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhc
Confidence            999854321                   11111            246999999999999999

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.95  E-value=3.1e-28  Score=243.03  Aligned_cols=184  Identities=23%  Similarity=0.372  Sum_probs=152.1

Q ss_pred             CCccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          299 SGEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       299 ~~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      ....+..++|++.+.||+|+||.||+|.+..   .+|+|.++.... .....+.+.+|+.+++.++||||+++++++...
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  101 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERD-NEDQLKAFKREVMAYRQTRHENVVLFMGACMSP  101 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSC-CCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECS
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCC-CHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecC
Confidence            3445667899999999999999999999865   499999875432 222334566799999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+++||||+++++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++ ++.+||+|||++...
T Consensus       102 ~~~~iv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~  179 (319)
T 2y4i_B          102 PHLAIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSIS  179 (319)
T ss_dssp             SCEEEECBCCCSEEHHHHTTSSC-CCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC--
T ss_pred             CceEEEeecccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCcccc
Confidence            99999999999999999997753 3589999999999999999999999999999999999998 689999999987532


Q ss_pred             C--------------------CCCc---------------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 S--------------------CKPQ---------------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~--------------------~~~~---------------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                    .+|+               ....+|+|++|++++++++|..||.
T Consensus       180 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~  244 (319)
T 2y4i_B          180 GVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFK  244 (319)
T ss_dssp             --------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred             ccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            1                    1111               1234599999999999999999985

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.95  E-value=6.7e-27  Score=249.73  Aligned_cols=177  Identities=18%  Similarity=0.268  Sum_probs=149.9

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC-CCcceeeEEEEeCCeEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH-PFLPTLYASFQTSTHICL  383 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l~~~~~~~~~~~l  383 (489)
                      .++|++.+.||+|+||.||+|.+..+++.||||++......     ..+..|+.+++.+.| ++|+.+..++......++
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-----~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l   80 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH-----PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL   80 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS-----CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence            46899999999999999999999999999999988654322     246679999999986 566677777778889999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEE---ecCCcEEEEecCCccccCC
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILL---QKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILl---d~~g~vKL~DFGlS~~~~~  460 (489)
                      ||||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+||||   +.++.+||+|||+++....
T Consensus        81 vme~~-g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~  158 (483)
T 3sv0_A           81 VMDLL-GPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRD  158 (483)
T ss_dssp             EEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             EEECC-CCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccC
Confidence            99999 999999998643 348999999999999999999999999999999999999   6889999999999964332


Q ss_pred             CC----------------------------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 KP----------------------------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ~~----------------------------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..                            ......|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~  214 (483)
T 3sv0_A          159 TSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQ  214 (483)
T ss_dssp             TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             CccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCc
Confidence            11                            01123489999999999999999995

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.94  E-value=4.7e-27  Score=234.66  Aligned_cols=182  Identities=21%  Similarity=0.289  Sum_probs=154.2

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC--CCCcceeeEEEEeC
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTLYASFQTS  378 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~--HpnIv~l~~~~~~~  378 (489)
                      ..+..++|++++.||+|+||.||+|.+.. ++.||+|.+..... .......+.+|+.+++.+.  ||||+++++++...
T Consensus        23 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~  100 (313)
T 3cek_A           23 MSVKGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD  100 (313)
T ss_dssp             EEETTEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECS
T ss_pred             eeeccceEEEEEEecCCCCEEEEEEEcCC-CcEEEEEEeccccc-cccchHHHHHHHHHHHhccccCCceEEEEEEeecC
Confidence            34555789999999999999999999864 88999999976432 3456678889999999997  59999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ...++||| +.+++|.+++....  .+++..+..++.|++.||.|||++||+||||||+|||++ ++.+||+|||++...
T Consensus       101 ~~~~lv~e-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~  176 (313)
T 3cek_A          101 QYIYMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQM  176 (313)
T ss_dssp             SEEEEEEC-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC-
T ss_pred             CEEEEEEe-cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeeccccccc
Confidence            99999999 55889999998763  489999999999999999999999999999999999996 589999999998643


Q ss_pred             CC-----------------CCc-----------------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC-----------------KPQ-----------------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~-----------------~~~-----------------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..                 +|+                 ....+|+|++|++++++++|..||.
T Consensus       177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~  240 (313)
T 3cek_A          177 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQ  240 (313)
T ss_dssp             -------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchh
Confidence            21                 111                 1224589999999999999999985

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.94  E-value=4.6e-27  Score=242.32  Aligned_cols=180  Identities=24%  Similarity=0.342  Sum_probs=153.2

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CC-----CcceeeEEEEe
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HP-----FLPTLYASFQT  377 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-Hp-----nIv~l~~~~~~  377 (489)
                      ..++|++.+.||+|+||+||+|.+..+++.||+|++...    ......+..|+.+++.+. |+     +|+.+++++..
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~  127 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK----KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF  127 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS----HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc----HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence            357899999999999999999999999999999999643    334566777888888774 55     49999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH--HCCCeecCCCCCCEEEe--cCCcEEEEecC
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH--CLGIIYRDLKPENILLQ--KDGHVVLTDFD  453 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH--~~gIvHrDLKP~NILld--~~g~vKL~DFG  453 (489)
                      ...+|+||||++ ++|.+++.......+++..+..++.|++.||.|||  +.||+||||||+|||++  .++.+||+|||
T Consensus       128 ~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG  206 (382)
T 2vx3_A          128 RNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFG  206 (382)
T ss_dssp             TTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCT
T ss_pred             CCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEecc
Confidence            999999999995 59999998876566899999999999999999999  57999999999999995  47889999999


Q ss_pred             CccccCCC------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          454 LSFMTSCK------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       454 lS~~~~~~------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +|+.....            |      .....+|+|++|++++++++|..||.
T Consensus       207 ~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~  259 (382)
T 2vx3_A          207 SSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS  259 (382)
T ss_dssp             TCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            99654311            1      12234589999999999999999985

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.94  E-value=2e-27  Score=258.59  Aligned_cols=169  Identities=15%  Similarity=0.121  Sum_probs=130.4

Q ss_pred             ccCCCCceEEEEEEEcCCCcEEEEEEeeccccc-------chHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEE
Q 042772          313 PLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-------NRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       313 ~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~-------~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..+.|++|.+..+...-.|+.|++|.+.+....       .....+.+.+|+++|+++ .|+||++++++++++..+|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            467788887777777777999999999765321       233456799999999999 699999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCCCce
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQV  464 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~~~~  464 (489)
                      |||++|++|.++|...  .++++.   .|+.||+.||.|+|++|||||||||+|||++.+|.+||+|||+|+...... .
T Consensus       321 MEyv~G~~L~d~i~~~--~~l~~~---~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~-~  394 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAG--EEIDRE---KILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC-S  394 (569)
T ss_dssp             EECCCSEEHHHHHHTT--CCCCHH---HHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC----C
T ss_pred             EecCCCCcHHHHHHhC--CCCCHH---HHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC-c
Confidence            9999999999999876  346664   478899999999999999999999999999999999999999998765432 3


Q ss_pred             eecccccchHHHHHHHHhCCccc
Q 042772          465 FYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       465 ~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      .....+++.+|++||++.|..+|
T Consensus       395 ~~~t~vGTp~YmAPE~l~g~~~~  417 (569)
T 4azs_A          395 WPTNLVQSFFVFVNELFAENKSW  417 (569)
T ss_dssp             CSHHHHHHHHHHHHHHC------
T ss_pred             cccCceechhhccHHHhCCCCCC
Confidence            34557899999999998887554

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.94  E-value=1.1e-26  Score=256.92  Aligned_cols=183  Identities=23%  Similarity=0.305  Sum_probs=154.2

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCC---CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGA---GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~t---g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      .+..++|++.+.||+|+||.||+|.+..+   +..||+|.+...  ........+.+|+.+++.++||||+++++++. .
T Consensus       386 ~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~  462 (656)
T 2j0j_A          386 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-E  462 (656)
T ss_dssp             BCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST--TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-S
T ss_pred             ccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-c
Confidence            34567899999999999999999998653   467999988643  23445677889999999999999999999885 4


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      +..|+||||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|+..
T Consensus       463 ~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~  541 (656)
T 2j0j_A          463 NPVWIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM  541 (656)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSC
T ss_pred             CceEEEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeec
Confidence            57899999999999999998753 34899999999999999999999999999999999999999999999999999754


Q ss_pred             CCC----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SCK----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~~----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ...                |+      ....+|+|++|++++|+++ |..||.
T Consensus       542 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~  594 (656)
T 2j0j_A          542 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ  594 (656)
T ss_dssp             CC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             CCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCC
Confidence            321                11      1123489999999999986 999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.94  E-value=4.1e-27  Score=260.98  Aligned_cols=178  Identities=19%  Similarity=0.274  Sum_probs=149.4

Q ss_pred             cccCcccccccCCCCceEEEEEEEcC-CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe--
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQG-AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH--  380 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~-tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--  380 (489)
                      ..++|++.+.||+|+||.||+|.+.. +++.||+|.+...  ........+..|+.+++.++||||+++++++.....  
T Consensus        78 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  155 (681)
T 2pzi_A           78 VAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS--GDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHG  155 (681)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSS--CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTS
T ss_pred             eCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc--CCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCC
Confidence            34789999999999999999999986 7899999998653  234556678899999999999999999999987655  


Q ss_pred             ---EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          381 ---ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       381 ---~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                         .|+||||++|++|.+++..    .+++..+..++.||+.||.|||++||+||||||+|||++.+ .+||+|||++..
T Consensus       156 ~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~  230 (681)
T 2pzi_A          156 DPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSR  230 (681)
T ss_dssp             CEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred             CceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchh
Confidence               7999999999999988754    48999999999999999999999999999999999999875 899999999875


Q ss_pred             cCC-----------CCce-----eecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC-----------KPQV-----FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~-----------~~~~-----~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...           .|+.     ...+|+|++|++++++++|..||.
T Consensus       231 ~~~~~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~  277 (681)
T 2pzi_A          231 INSFGYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRN  277 (681)
T ss_dssp             TTCCSCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEET
T ss_pred             cccCCccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCc
Confidence            432           1221     123489999999999999988764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.94  E-value=6.6e-27  Score=257.65  Aligned_cols=182  Identities=26%  Similarity=0.375  Sum_probs=153.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe------C
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT------S  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~------~  378 (489)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|.+...  ........+.+|+.+++.++||||+++++++..      .
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~--~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~   90 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE--LSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN   90 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSC--CCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEeccc--CCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence            36799999999999999999999999999999998654  245556778899999999999999999998765      6


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCc---EEEEecCC
Q 042772          379 THICLITDFCPGGELFALLDKQP-MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGH---VVLTDFDL  454 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~-~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~---vKL~DFGl  454 (489)
                      ...++||||++||+|.+++.... ...+++..+..++.|++.||.|||++||+||||||+||+++.++.   +||+|||+
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~  170 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGY  170 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCC
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEccccc
Confidence            67899999999999999998743 235889999999999999999999999999999999999997765   99999999


Q ss_pred             ccccCC--------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          455 SFMTSC--------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       455 S~~~~~--------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +.....              +|+.      ...+|+|++|++++++++|..||.
T Consensus       171 a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~  224 (676)
T 3qa8_A          171 AKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFL  224 (676)
T ss_dssp             CCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCC
Confidence            965321              2222      124489999999999999999985

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.93  E-value=5.5e-26  Score=239.12  Aligned_cols=178  Identities=20%  Similarity=0.285  Sum_probs=143.5

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTH  380 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~  380 (489)
                      .++..+|.+.+.||+|+||+|+.. ...+++.||+|.+.+....      .+.+|+.+++.+ +||||+++++++.+...
T Consensus        20 ~i~~~~y~~~~~LG~G~~G~V~~~-~~~~~~~vAvK~~~~~~~~------~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~   92 (432)
T 3p23_A           20 IVGKISFCPKDVLGHGAEGTIVYR-GMFDNRDVAVKRILPECFS------FADREVQLLRESDEHPNVIRYFCTEKDRQF   92 (432)
T ss_dssp             EETTEEEEEEEEEEECGGGCEEEE-EESSSSEEEEEEECTTTEE------ECHHHHHHHHHSCCCTTBCCEEEEEEETTE
T ss_pred             EEccEEEecCCeeecCcCEEEEEE-EEeCCeEEEEEEECHHHHH------HHHHHHHHHHhccCCCCcCeEEEEEecCCE
Confidence            445567999999999999997643 3456899999999654322      234699999998 79999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---C--CcEEEEecCCc
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---D--GHVVLTDFDLS  455 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~--g~vKL~DFGlS  455 (489)
                      .|+|||||. |+|.+++..... .+.+..+..++.||+.||.|||++||+||||||+|||++.   +  ..+||+|||+|
T Consensus        93 ~~lv~E~~~-g~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a  170 (432)
T 3p23_A           93 QYIAIELCA-ATLQEYVEQKDF-AHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLC  170 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSSC-CCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEE
T ss_pred             EEEEEECCC-CCHHHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccce
Confidence            999999995 699999987643 3455567789999999999999999999999999999953   2  35889999998


Q ss_pred             cccC------------------CCCceee---------cccccchHHHHHHHHh-CCcccC
Q 042772          456 FMTS------------------CKPQVFY---------HAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       456 ~~~~------------------~~~~~~~---------~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ....                  .+|+...         ..|+|++|++++++++ |..||.
T Consensus       171 ~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~  231 (432)
T 3p23_A          171 KKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFG  231 (432)
T ss_dssp             ECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTB
T ss_pred             eeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcc
Confidence            6432                  1233321         3589999999999999 999884

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.93  E-value=7.9e-26  Score=237.68  Aligned_cols=174  Identities=25%  Similarity=0.352  Sum_probs=138.2

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCCeEEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      .|...+.||+|+||+||.+. ..+|+.||+|.+....      .+.+.+|+.+++.+ +||||+++++++.+...+|+||
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~-~~~g~~vAvK~~~~~~------~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~   88 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQG-SFQGRPVAVKRMLIDF------CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIAL   88 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEE-ESSSSEEEEEEEEGGG------HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             eeeccCeEeeCCCeEEEEEE-EECCeEEEEEEEcHHH------HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEE
Confidence            45667889999999998754 4569999999986532      24567899999876 8999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCC-----CCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC-------------CcE
Q 042772          386 DFCPGGELFALLDKQPMKI-----FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD-------------GHV  447 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~-----l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~-------------g~v  447 (489)
                      |||. |+|.+++.......     .++..+..++.||+.||.|||++||+||||||+|||++.+             +.+
T Consensus        89 E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~  167 (434)
T 2rio_A           89 ELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRI  167 (434)
T ss_dssp             CCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred             ecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEE
Confidence            9995 69999998753211     1233456799999999999999999999999999999754             489


Q ss_pred             EEEecCCccccCC-------------------CCc-------------eeecccccchHHHHHHHHh-CCcccC
Q 042772          448 VLTDFDLSFMTSC-------------------KPQ-------------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       448 KL~DFGlS~~~~~-------------------~~~-------------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||+|||+|.....                   +|+             ....+|+|++|++++++++ |..||.
T Consensus       168 kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~  241 (434)
T 2rio_A          168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFG  241 (434)
T ss_dssp             EECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             EEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCC
Confidence            9999999864321                   111             1223589999999999998 999985

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.92  E-value=4.5e-26  Score=238.08  Aligned_cols=182  Identities=15%  Similarity=0.105  Sum_probs=139.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC-CCc---------c------
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH-PFL---------P------  369 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnI---------v------  369 (489)
                      ..|...+.||+|+||.||+|.+..+|+.||+|++...........+.+.+|+.+++.+.| +|.         +      
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  157 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  157 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence            458889999999999999999999999999999875443344446778899999999877 221         1      


Q ss_pred             ------eeeEEEEe-----CCeEEEEEecCCCCCHHHHHh-----hCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecC
Q 042772          370 ------TLYASFQT-----STHICLITDFCPGGELFALLD-----KQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRD  433 (489)
Q Consensus       370 ------~l~~~~~~-----~~~~~lVmEy~~ggsL~~~L~-----~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrD  433 (489)
                            .+...+..     ....+++|+++ +++|.+++.     ......+++..+..++.||+.||.|||++||+|||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrD  236 (413)
T 3dzo_A          158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  236 (413)
T ss_dssp             ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence                  11111111     22468888876 789999985     22234477888999999999999999999999999


Q ss_pred             CCCCCEEEecCCcEEEEecCCccccC-----------CCCcee----------------ecccccchHHHHHHHHhCCcc
Q 042772          434 LKPENILLQKDGHVVLTDFDLSFMTS-----------CKPQVF----------------YHAHVNGFYFIMYKWLTGYFT  486 (489)
Q Consensus       434 LKP~NILld~~g~vKL~DFGlS~~~~-----------~~~~~~----------------~~~~v~s~g~~a~e~~~G~lp  486 (489)
                      |||+|||++.++.+||+|||+++...           .+|+..                ..+|+|++|++++++++|..|
T Consensus       237 iKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~P  316 (413)
T 3dzo_A          237 LRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLP  316 (413)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccceEEEecCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999986332           122222                256999999999999999999


Q ss_pred             cC
Q 042772          487 YV  488 (489)
Q Consensus       487 Y~  488 (489)
                      |.
T Consensus       317 f~  318 (413)
T 3dzo_A          317 NT  318 (413)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.88  E-value=2.2e-23  Score=225.48  Aligned_cols=161  Identities=15%  Similarity=0.115  Sum_probs=120.5

Q ss_pred             ccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc-----hHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN-----RNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       309 ~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~-----~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ...+.||+|+||.||+|.  ..++.+++|.........     ....+++.+|+.++++++||||+++..++......|+
T Consensus       339 ~~~~~LG~G~fg~Vy~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~l  416 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDS--YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRI  416 (540)
T ss_dssp             ---------CCEEEEEEE--CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEE
T ss_pred             CCCCEEeeCCCEEEEEEE--ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEE
Confidence            446789999999999994  347788999875433221     2234568899999999999999966555567777899


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCCCc
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQ  463 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~~~  463 (489)
                      ||||++|++|.+++..          +..++.|++.||.|||++||+||||||+|||++.  .+||+|||+|+.......
T Consensus       417 VmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~  484 (540)
T 3en9_A          417 MMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDED  484 (540)
T ss_dssp             EEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHH
T ss_pred             EEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCccc
Confidence            9999999999999875          4578999999999999999999999999999998  999999999987754221


Q ss_pred             e------eecccccchHHHHHHHHhC
Q 042772          464 V------FYHAHVNGFYFIMYKWLTG  483 (489)
Q Consensus       464 ~------~~~~~v~s~g~~a~e~~~G  483 (489)
                      .      ....-.++..|++||+..+
T Consensus       485 ~~~~~~~~~~~~~GT~~y~APEv~~~  510 (540)
T 3en9_A          485 KAVDLIVFKKAVLSTHHEKFDEIWER  510 (540)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cccchhhhhhhhcCCCCcCCHHHHHH
Confidence            1      1123345667888887654

>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*

Probab=99.88  E-value=3e-22  Score=168.58  Aligned_cols=108  Identities=39%  Similarity=0.835  Sum_probs=101.7

Q ss_pred             ccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccccccc
Q 042772           76 IEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNF  155 (489)
Q Consensus        76 ~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (489)
                      +.++|+|+|+..++++|+|+|++|+++|||+++|++|+++.+|.++.                                 
T Consensus         2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~---------------------------------   48 (109)
T 1n9l_A            2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEG---------------------------------   48 (109)
T ss_dssp             CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT---------------------------------
T ss_pred             CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCC---------------------------------
Confidence            56899999987679999999999999999999999999999998765                                 


Q ss_pred             ccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCc
Q 042772          156 TLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSD  225 (489)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te  225 (489)
                               ++...+..+++++..+++++.++.+++|||+.||+.++++|++|.+|++++|+++++|||+
T Consensus        49 ---------~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe  109 (109)
T 1n9l_A           49 ---------TDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS  109 (109)
T ss_dssp             ---------CCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred             ---------CCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence                     6777889999999999999999999999999999999999999999999999999999996

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.88  E-value=9.9e-23  Score=202.55  Aligned_cols=139  Identities=14%  Similarity=0.070  Sum_probs=111.6

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch---------------HHHHHHHHHHHHHHhCCCCCccee
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR---------------NKVHRACIEREIMSLLDHPFLPTL  371 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~---------------~~~~~~~~E~~il~~l~HpnIv~l  371 (489)
                      .|.+.+.||+|+||.||+|.+ .+|+.||+|.++.......               .....+.+|+.+++.++|   +++
T Consensus        91 ~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~---~~v  166 (282)
T 1zar_A           91 VDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG---LAV  166 (282)
T ss_dssp             CSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT---SSS
T ss_pred             EEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC---CCc
Confidence            466779999999999999999 7899999999964322111               235678899999999984   455


Q ss_pred             eEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEe
Q 042772          372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTD  451 (489)
Q Consensus       372 ~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~D  451 (489)
                      .+++.. +..|+||||++|++|.+ +..        .....++.|++.||.|||++||+||||||+|||++ +|.+||+|
T Consensus       167 ~~~~~~-~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~D  235 (282)
T 1zar_A          167 PKVYAW-EGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIID  235 (282)
T ss_dssp             CCEEEE-ETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECC
T ss_pred             CeEEec-cceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEE
Confidence            554433 45699999999999988 422        12446899999999999999999999999999999 99999999


Q ss_pred             cCCccccCC
Q 042772          452 FDLSFMTSC  460 (489)
Q Consensus       452 FGlS~~~~~  460 (489)
                      ||+|+.+..
T Consensus       236 FG~a~~~~~  244 (282)
T 1zar_A          236 FPQSVEVGE  244 (282)
T ss_dssp             CTTCEETTS
T ss_pred             CCCCeECCC
Confidence            999986653

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.82  E-value=1e-20  Score=185.18  Aligned_cols=141  Identities=16%  Similarity=0.086  Sum_probs=109.5

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcE--EEEEEeecccccch---------------------HHHHHHHHHHHHHHhCC
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGEL--YAMKAMEKSVMLNR---------------------NKVHRACIEREIMSLLD  364 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~--vAiK~i~~~~~~~~---------------------~~~~~~~~E~~il~~l~  364 (489)
                      |.+.+.||+|+||.||+|.+..+|+.  ||+|+++.......                     .....+..|..++..+.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999777988  99998754321110                     11236778999999998


Q ss_pred             CCCc--ceeeEEEEeCCeEEEEEecCCC-C----CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCeecCCCC
Q 042772          365 HPFL--PTLYASFQTSTHICLITDFCPG-G----ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH-CLGIIYRDLKP  436 (489)
Q Consensus       365 HpnI--v~l~~~~~~~~~~~lVmEy~~g-g----sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH-~~gIvHrDLKP  436 (489)
                      |+++  +.++..    ...++||||+.+ |    +|.++...     .++..+..++.|++.||.||| +.||+||||||
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp  199 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAELVHADLSE  199 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSCEECSSCST
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCH
Confidence            8764  444432    256899999942 3    67766533     234567789999999999999 99999999999


Q ss_pred             CCEEEecCCcEEEEecCCccccC
Q 042772          437 ENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       437 ~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      +|||++.  .++|+|||+|....
T Consensus       200 ~NILl~~--~~~liDFG~a~~~~  220 (258)
T 1zth_A          200 YNIMYID--KVYFIDMGQAVTLR  220 (258)
T ss_dssp             TSEEESS--SEEECCCTTCEETT
T ss_pred             HHEEEcC--cEEEEECcccccCC
Confidence            9999988  89999999997664

>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}

Probab=99.82  E-value=1.2e-19  Score=154.13  Aligned_cols=115  Identities=23%  Similarity=0.377  Sum_probs=105.4

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      .+..+++.++++|+++|+   +|.|+|+|++|++++||+++|++|+++..|..+.                         
T Consensus         6 ~~~~~~~~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~-------------------------   57 (120)
T 2gj3_A            6 IFRQTVEHAPIAISITDL---KANILYANRAFRTITGYGSEEVLGKNESILSNGT-------------------------   57 (120)
T ss_dssp             HHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTT-------------------------
T ss_pred             HHHHHHHhCCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCC-------------------------
Confidence            467899999999999999   9999999999999999999999999988776554                         


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccc
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~k  227 (489)
                                       ........++.++..++.+..++..++|||+.+|+.++++|++|.+|++.+++++.+|||++|
T Consensus        58 -----------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k  120 (120)
T 2gj3_A           58 -----------------TPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH  120 (120)
T ss_dssp             -----------------SCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred             -----------------CCHHHHHHHHHHHHcCCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence                             455567788899999999999999999999999999999999999999999999999999975

>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*

Probab=99.79  E-value=2.9e-19  Score=154.35  Aligned_cols=119  Identities=39%  Similarity=0.722  Sum_probs=103.3

Q ss_pred             HHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcc
Q 042772           71 TTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNY  150 (489)
Q Consensus        71 ~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (489)
                      .+++.++++|+++|+.-+++.|+|+|++|++++||+++|++|+++.++..+.                            
T Consensus         3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~----------------------------   54 (132)
T 2pr5_A            3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKH----------------------------   54 (132)
T ss_dssp             ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTT----------------------------
T ss_pred             hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCC----------------------------
Confidence            5688999999999994445599999999999999999999999998887654                            


Q ss_pred             cccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcccccc
Q 042772          151 GVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPL  230 (489)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~e  230 (489)
                                    .+......++.++..++.+..++..++|||+.+|+.++++|++|.+  +.+++++.+|||++++++
T Consensus        55 --------------~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e  118 (132)
T 2pr5_A           55 --------------TDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYE  118 (132)
T ss_dssp             --------------CCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHH
T ss_pred             --------------CCHHHHHHHHHHHHcCCCeEEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHH
Confidence                          5666678889999999999999999999999999999999999875  889999999999999877


Q ss_pred             ccc
Q 042772          231 RNR  233 (489)
Q Consensus       231 ~~~  233 (489)
                      ++.
T Consensus       119 ~~l  121 (132)
T 2pr5_A          119 KLL  121 (132)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}

Probab=99.78  E-value=9.7e-19  Score=166.40  Aligned_cols=124  Identities=20%  Similarity=0.375  Sum_probs=117.8

Q ss_pred             hhHHHHHHHHHhhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhcccc
Q 042772           54 WDRAERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNC  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~  133 (489)
                      .|+++|++.+++...+..+++++.++++++|+   ++.|+|+|++|++++||+++|++|+++.+|..+.           
T Consensus        98 ~DIT~~k~~e~~l~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~-----------  163 (227)
T 3ewk_A           98 RDITAQKEAEAQLARLKQAMDANSEMILLTDR---AGRIIYANPALCRFSGMAEGELLGQSPSILDSPL-----------  163 (227)
T ss_dssp             EECTTTTHHHHHHHHHHHHHHTCCSEEEEECT---TSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTT-----------
T ss_pred             EehhhHHHHHHHHHHHHHHHhcCcCeEEEEcC---CCcEEEEchHHHHHhCCCHHHHcCCChhhccCCC-----------
Confidence            58999999999999999999999999999999   9999999999999999999999999999888765           


Q ss_pred             ccchhHHHHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCC------eeeEEEeecccc
Q 042772          134 STYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGK------KFWNLFHLQPMR  207 (489)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~------~~~~~~~~~p~~  207 (489)
                                                     .++.....+++++..+++|.+++.+++|||+      .||+.++++|++
T Consensus       164 -------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~  212 (227)
T 3ewk_A          164 -------------------------------ADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIH  212 (227)
T ss_dssp             -------------------------------SCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEE
T ss_pred             -------------------------------CCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEE
Confidence                                           7888999999999999999999999999997      899999999999


Q ss_pred             cCCCCeeEEeeeecc
Q 042772          208 DHKGELQYFIGVQLD  222 (489)
Q Consensus       208 ~~~g~~~~~~~~~~d  222 (489)
                      |.+|.+++|+++++|
T Consensus       213 d~~g~~~~~v~i~~D  227 (227)
T 3ewk_A          213 TDGNGLVGYVQIQHD  227 (227)
T ss_dssp             CSSSCEEEEEEEEEC
T ss_pred             CCCCCEEEEEEEecC
Confidence            999999999999987

>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*

Probab=99.77  E-value=2.6e-18  Score=155.01  Aligned_cols=126  Identities=29%  Similarity=0.529  Sum_probs=114.7

Q ss_pred             hhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHH
Q 042772           65 QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLA  144 (489)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (489)
                      +...+..+++.++++|+++|+..+++.|+|+|++|++++||+++|++|+++..+..+.                      
T Consensus         5 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~----------------------   62 (176)
T 4hia_A            5 QFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGD----------------------   62 (176)
T ss_dssp             HHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTT----------------------
T ss_pred             HHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCC----------------------
Confidence            3455789999999999999995555999999999999999999999999988777664                      


Q ss_pred             HhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          145 LWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                          ........+++++..+..+..++..+++||+.+|+.+++.|++|.+|.+.+++++.+|||
T Consensus        63 --------------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DIT  122 (176)
T 4hia_A           63 --------------------ENAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELG  122 (176)
T ss_dssp             --------------------CCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEES
T ss_pred             --------------------CCHHHHHHHHHHHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECc
Confidence                                667778889999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc
Q 042772          225 DHVEPLRN  232 (489)
Q Consensus       225 e~ke~e~~  232 (489)
                      ++++++++
T Consensus       123 e~k~~e~~  130 (176)
T 4hia_A          123 RSGNSEEA  130 (176)
T ss_dssp             SSGGGHHH
T ss_pred             HhhHHHHH
Confidence            99988876

>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*

Probab=99.72  E-value=8e-17  Score=132.37  Aligned_cols=114  Identities=83%  Similarity=1.266  Sum_probs=102.9

Q ss_pred             HHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccc
Q 042772           72 TLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYG  151 (489)
Q Consensus        72 ~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (489)
                      +++.++++++++|+..|++.|+|+|++|++++||+++|++|+++..+..+.                             
T Consensus         2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-----------------------------   52 (115)
T 4eet_B            2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPE-----------------------------   52 (115)
T ss_dssp             ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT-----------------------------
T ss_pred             ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCC-----------------------------
Confidence            578899999999998789999999999999999999999999988776654                             


Q ss_pred             ccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccc
Q 042772          152 VYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~k  227 (489)
                                   ........+++++..++.+..++...+++|+.+|+.+++.|++|.+|.+.+++++.+|||+++
T Consensus        53 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~  115 (115)
T 4eet_B           53 -------------TDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV  115 (115)
T ss_dssp             -------------SCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred             -------------CChHHHHHHHHHHHcCCCcceEEEEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence                         567777889999999999999999999999999999999999999999999999999999974

>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*

Probab=99.72  E-value=4.4e-17  Score=144.20  Aligned_cols=125  Identities=43%  Similarity=0.782  Sum_probs=112.9

Q ss_pred             hhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHH
Q 042772           65 QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLA  144 (489)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (489)
                      ....+..+++.++++++++|+..+++.|+++|++|++++||+++|++|+++..+..+.                      
T Consensus        33 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~----------------------   90 (166)
T 3ue6_A           33 PDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPE----------------------   90 (166)
T ss_dssp             CCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT----------------------
T ss_pred             HHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCC----------------------
Confidence            4456889999999999999996668999999999999999999999999988777654                      


Q ss_pred             HhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          145 LWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                          ........+..++..+..+..++...+++|+.+|+.+++.|++|.+|.+.+++++.+|||
T Consensus        91 --------------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DIT  150 (166)
T 3ue6_A           91 --------------------TDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVS  150 (166)
T ss_dssp             --------------------SCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCC
T ss_pred             --------------------CCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEech
Confidence                                567777888999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 042772          225 DHVEPLR  231 (489)
Q Consensus       225 e~ke~e~  231 (489)
                      ++++++.
T Consensus       151 e~k~~~~  157 (166)
T 3ue6_A          151 EDYAKLL  157 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9886543

>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}

Probab=99.71  E-value=6.5e-17  Score=156.34  Aligned_cols=124  Identities=35%  Similarity=0.607  Sum_probs=107.9

Q ss_pred             HhhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHH
Q 042772           64 RQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFL  143 (489)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  143 (489)
                      +....+..+++.++++|+++|+...++.|+|+|++|++++||+++|++|+++.++..+.                     
T Consensus        60 ~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~---------------------  118 (258)
T 3p7n_A           60 PPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSG---------------------  118 (258)
T ss_dssp             -CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTT---------------------
T ss_pred             hHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCC---------------------
Confidence            34456889999999999999995557789999999999999999999999998887664                     


Q ss_pred             HHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccC
Q 042772          144 ALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDG  223 (489)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~  223 (489)
                                           ........++.++..+..+..++..+++||+.+|+.+++.|++|.+|.+++++++.+||
T Consensus       119 ---------------------~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DI  177 (258)
T 3p7n_A          119 ---------------------TEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEV  177 (258)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC
T ss_pred             ---------------------CchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeec
Confidence                                 67778888999999999999999999999999999999999999999999999999999


Q ss_pred             Cccccc
Q 042772          224 SDHVEP  229 (489)
Q Consensus       224 Te~ke~  229 (489)
                      |++++.
T Consensus       178 Terk~~  183 (258)
T 3p7n_A          178 DDDQPN  183 (258)
T ss_dssp             ------
T ss_pred             chhhhh
Confidence            999543

>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}

Probab=99.71  E-value=5.8e-17  Score=137.15  Aligned_cols=122  Identities=39%  Similarity=0.731  Sum_probs=105.2

Q ss_pred             HHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccc
Q 042772           72 TLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYG  151 (489)
Q Consensus        72 ~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (489)
                      +++.++++++++|+..+++.|+++|++|++++||+++|++|+++..+..+.                             
T Consensus         2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~-----------------------------   52 (128)
T 3t50_A            2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHG-----------------------------   52 (128)
T ss_dssp             CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT-----------------------------
T ss_pred             ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCc-----------------------------
Confidence            467889999999986568899999999999999999999999987776554                             


Q ss_pred             ccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccccccc
Q 042772          152 VYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLR  231 (489)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~e~  231 (489)
                                   ........+..++..+..+..++...+++|..+|+.+++.|++|..|.+.+++++.+|||+++++++
T Consensus        53 -------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~  119 (128)
T 3t50_A           53 -------------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRG  119 (128)
T ss_dssp             -------------SCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC---
T ss_pred             -------------cCHHHHHHHHHHHHcCCCceeEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhh
Confidence                         5677778899999999999999999999999999999999999999999999999999999998887


Q ss_pred             cccc
Q 042772          232 NRLS  235 (489)
Q Consensus       232 ~~l~  235 (489)
                      +..+
T Consensus       120 ~~~~  123 (128)
T 3t50_A          120 SLEH  123 (128)
T ss_dssp             ----
T ss_pred             hhhh
Confidence            7643

>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}

Probab=99.68  E-value=1.3e-16  Score=151.63  Aligned_cols=109  Identities=21%  Similarity=0.398  Sum_probs=100.7

Q ss_pred             EEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCc
Q 042772           80 FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGC  159 (489)
Q Consensus        80 ~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (489)
                      |+|+|+   +|.|+|||++|++++||+++|++|+++.++..+.                                     
T Consensus         2 i~i~D~---~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~-------------------------------------   41 (227)
T 3ewk_A            2 VSITDL---QGRILYANDNFCAVSRYGREELVGQDHRIVNSGY-------------------------------------   41 (227)
T ss_dssp             EEEEET---TCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSC-------------------------------------
T ss_pred             EEEECC---CCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCC-------------------------------------
Confidence            789999   9999999999999999999999999998876553                                     


Q ss_pred             ccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccccccccc
Q 042772          160 CLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNR  233 (489)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~e~~~  233 (489)
                           .+......+++++..+..+..++.+++|||+.+|+..++.|++|.+|.+.+++++.+|||++++++++.
T Consensus        42 -----~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l  110 (227)
T 3ewk_A           42 -----HGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQL  110 (227)
T ss_dssp             -----SCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHH
T ss_pred             -----CCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHH
Confidence                 567778889999999999999999999999999999999999999999999999999999999877654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.67  E-value=3.6e-16  Score=156.73  Aligned_cols=122  Identities=79%  Similarity=1.226  Sum_probs=111.6

Q ss_pred             HHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhc
Q 042772           70 ATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKN  149 (489)
Q Consensus        70 ~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (489)
                      +.+++.++++|+++|++.|+|.|+|+|++|++++||+++|++|+++..+..++                           
T Consensus        14 ~~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~---------------------------   66 (332)
T 2wkq_A           14 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPE---------------------------   66 (332)
T ss_dssp             CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT---------------------------
T ss_pred             HhHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCC---------------------------
Confidence            34678899999999998889999999999999999999999999998887664                           


Q ss_pred             ccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccccc
Q 042772          150 YGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEP  229 (489)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~  229 (489)
                                     .+......+++++..++.+..++..+++||+.+|+..+++|++|..|++.+++++.+|||++++.
T Consensus        67 ---------------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~  131 (332)
T 2wkq_A           67 ---------------TDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRD  131 (332)
T ss_dssp             ---------------CCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCH
T ss_pred             ---------------CCHHHHHHHHHHHHcCCeeEEEEEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhh
Confidence                           67778888999999999999999999999999999999999999999999999999999999876


Q ss_pred             cccc
Q 042772          230 LRNR  233 (489)
Q Consensus       230 e~~~  233 (489)
                      +++.
T Consensus       132 e~~~  135 (332)
T 2wkq_A          132 AAER  135 (332)
T ss_dssp             HHHH
T ss_pred             hhhc
Confidence            6544

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.67  E-value=9.4e-17  Score=166.20  Aligned_cols=140  Identities=15%  Similarity=0.147  Sum_probs=101.3

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc------------h---HH--H--HHHHHHHHHHHhCCCCCc
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN------------R---NK--V--HRACIEREIMSLLDHPFL  368 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~------------~---~~--~--~~~~~E~~il~~l~HpnI  368 (489)
                      |++...||+|+||.||+|.+. +|+.||+|+++......            .   +.  .  .....|...|.++.++++
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999999999975 59999999876432110            0   00  1  112346667777755554


Q ss_pred             ceeeEEEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC---
Q 042772          369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG---  445 (489)
Q Consensus       369 v~l~~~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g---  445 (489)
                      ....-+...  ..+|||||++|++|..+...        ..+..++.|++.+|.|||+.|||||||||.|||++++|   
T Consensus       176 ~vp~p~~~~--~~~LVME~i~G~~L~~l~~~--------~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~  245 (397)
T 4gyi_A          176 PVPEPIAQS--RHTIVMSLVDALPMRQVSSV--------PDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAE  245 (397)
T ss_dssp             SCCCEEEEE--TTEEEEECCSCEEGGGCCCC--------SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSS
T ss_pred             CCCeeeecc--CceEEEEecCCccHhhhccc--------HHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcc
Confidence            322211122  24799999999888654321        23456788999999999999999999999999999877   


Q ss_pred             -------cEEEEecCCcccc
Q 042772          446 -------HVVLTDFDLSFMT  458 (489)
Q Consensus       446 -------~vKL~DFGlS~~~  458 (489)
                             .+.|+||+-+...
T Consensus       246 d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          246 DPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             CTTSEEEEEEECCCTTCEET
T ss_pred             cccccccceEEEEeCCcccC
Confidence                   4899999987543

>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A

Probab=99.64  E-value=4.9e-16  Score=130.45  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=94.5

Q ss_pred             cCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccc
Q 042772           77 EKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFT  156 (489)
Q Consensus        77 ~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (489)
                      .+.++++|+   ++.|+|+|++|++++||+++|++|+++..+..|+                                  
T Consensus         9 ~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~----------------------------------   51 (117)
T 3f1p_A            9 KTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFYHAL----------------------------------   51 (117)
T ss_dssp             GEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGG----------------------------------
T ss_pred             ccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCchhheECHH----------------------------------
Confidence            477889999   9999999999999999999999999877666664                                  


Q ss_pred             cCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccC-CCCeeEEeeeeccCCccccc
Q 042772          157 LGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDH-KGELQYFIGVQLDGSDHVEP  229 (489)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~-~g~~~~~~~~~~d~Te~ke~  229 (489)
                              ......+.+..++..+..++.++...+|||+.+|+..+..|++|. .|.+.+++++.+|||+++++
T Consensus        52 --------d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~~  117 (117)
T 3f1p_A           52 --------DSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN  117 (117)
T ss_dssp             --------GHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC-
T ss_pred             --------HHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEEEEEeeEEEECCCCCCceEEEEEeeeccccccC
Confidence                    334455667788888888888999999999999999999999998 89999999999999999863

>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B

Probab=99.64  E-value=5.9e-16  Score=130.94  Aligned_cols=114  Identities=13%  Similarity=0.209  Sum_probs=94.4

Q ss_pred             HHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhc
Q 042772           70 ATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKN  149 (489)
Q Consensus        70 ~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (489)
                      ...++.+.+.+++.|+   ++.|+|+|++|++++||+++|++|+++..+..|+                           
T Consensus         5 ~ll~e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~---------------------------   54 (121)
T 3f1p_B            5 GLNVCQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPE---------------------------   54 (121)
T ss_dssp             ---CCCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTT---------------------------
T ss_pred             cceecCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCCHHHeECHH---------------------------
Confidence            3467888999999999   9999999999999999999999999977666564                           


Q ss_pred             ccccccccCcccccCCCHHHHHHHHHHHH-cCCcEEEEEEeeecCCCeeeEEEeecccccC-CCCeeEEeeeeccCCccc
Q 042772          150 YGVYNFTLGCCLEISSDQATVSKIRDAVR-EQREITVQLINYTKSGKKFWNLFHLQPMRDH-KGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~-~g~~~~~~~~~~d~Te~k  227 (489)
                                     ......+.+.+++. .+..+..++...+|||+.+|+..+..|++|. .|++.+++++.+|||+++
T Consensus        55 ---------------d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~k  119 (121)
T 3f1p_B           55 ---------------DQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSS  119 (121)
T ss_dssp             ---------------THHHHHHHHHHHTTSTTCCEEEEEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC-
T ss_pred             ---------------HHHHHHHHHHHHHhcCCCcccEEEEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEccccc
Confidence                           33334455666664 4557889999999999999999999999998 899999999999999987


Q ss_pred             c
Q 042772          228 E  228 (489)
Q Consensus       228 e  228 (489)
                      +
T Consensus       120 q  120 (121)
T 3f1p_B          120 Q  120 (121)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A

Probab=99.63  E-value=6.1e-16  Score=130.63  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=94.0

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      ++..+++.+++++++ |.   ++.|+++|++|++++||+++|++|+++..+..+.                         
T Consensus         4 ~~~~~~~~~~~~i~~-~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~-------------------------   54 (120)
T 3mqq_A            4 DYKTAFHLAPIGLVL-SR---DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSS-------------------------   54 (120)
T ss_dssp             CHHHHHHHCSSEEEE-EE---TTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSH-------------------------
T ss_pred             hHHHHHhcCCceEEE-ec---CCEEHHHHHHHHHHhCcCHHHhCCCchhhccCCh-------------------------
Confidence            467899999999976 66   8999999999999999999999999987665432                         


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccc
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~k  227 (489)
                                      .........+..++..+..+..++...++||+.+|+.++..|+ +..|...+++++.+|||++|
T Consensus        55 ----------------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk  117 (120)
T 3mqq_A           55 ----------------DEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATR  117 (120)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHSCEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC--
T ss_pred             ----------------hhHHHHHHHHHHHHhcCCcceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhh
Confidence                            0113344566777788888999999999999999999999999 66677788999999999998


Q ss_pred             cc
Q 042772          228 EP  229 (489)
Q Consensus       228 e~  229 (489)
                      +.
T Consensus       118 ~~  119 (120)
T 3mqq_A          118 RV  119 (120)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*

Probab=99.61  E-value=1.1e-14  Score=120.11  Aligned_cols=123  Identities=38%  Similarity=0.778  Sum_probs=104.2

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      .+..+++.+++++++.|..-+++.|+++|++|++++||+.++++|+++..+..+.                         
T Consensus         7 ~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-------------------------   61 (130)
T 2z6d_A            7 ELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPD-------------------------   61 (130)
T ss_dssp             CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT-------------------------
T ss_pred             HHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCC-------------------------
Confidence            3678899999999999921129999999999999999999999999987665443                         


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccc
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~k  227 (489)
                                       ........+..++..+..+..++...+++|+.+|+.+.+.|+.|..|.+.+++++.+|||+++
T Consensus        62 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~  124 (130)
T 2z6d_A           62 -----------------TDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYT  124 (130)
T ss_dssp             -----------------SCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC
T ss_pred             -----------------CCchHHHHHHHHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHH
Confidence                             456667778888999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q 042772          228 EPLRN  232 (489)
Q Consensus       228 e~e~~  232 (489)
                      +++++
T Consensus       125 ~~e~e  129 (130)
T 2z6d_A          125 EGVND  129 (130)
T ss_dssp             -----
T ss_pred             Hhhcc
Confidence            87654

>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*

Probab=99.61  E-value=2e-15  Score=127.45  Aligned_cols=111  Identities=18%  Similarity=0.196  Sum_probs=76.7

Q ss_pred             ccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccccccc
Q 042772           76 IEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNF  155 (489)
Q Consensus        76 ~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (489)
                      ++++|+++|+   +|.|+++|++|++++||+++|++|+++..|..+.                                 
T Consensus         2 ~~d~i~~~d~---~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~---------------------------------   45 (119)
T 2vv6_A            2 IPDAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEP---------------------------------   45 (119)
T ss_dssp             CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTT---------------------------------
T ss_pred             CcceEEEECC---CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCch---------------------------------
Confidence            5689999999   9999999999999999999999999988765442                                 


Q ss_pred             ccCcccccCCCHHHHHHHHHHHHcCCc----EEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccccccc
Q 042772          156 TLGCCLEISSDQATVSKIRDAVREQRE----ITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLR  231 (489)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~e~  231 (489)
                               ........+......+..    ...++...+|||+.||+.++++|+.+.  ...+++++.+|||+++++++
T Consensus        46 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~~~~~~~~--~~~~~~~~~~DITerk~~e~  114 (119)
T 2vv6_A           46 ---------DRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFPMHLSIGEMQSG--GEPYFTGFVRDLTEHQQTQA  114 (119)
T ss_dssp             ---------HHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC-------
T ss_pred             ---------HHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEEcHHHHHHHH
Confidence                     111111222333333221    234666789999999999999999874  33578999999999998877


Q ss_pred             cc
Q 042772          232 NR  233 (489)
Q Consensus       232 ~~  233 (489)
                      +.
T Consensus       115 ~l  116 (119)
T 2vv6_A          115 RL  116 (119)
T ss_dssp             --
T ss_pred             HH
Confidence            64

>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}

Probab=99.61  E-value=4.8e-15  Score=125.61  Aligned_cols=106  Identities=15%  Similarity=0.209  Sum_probs=86.1

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      .+..+++.++++|+++|+   +|.|++||++|++++||+++|++|+++..+..+.                         
T Consensus        12 ~~~~l~e~~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~-------------------------   63 (117)
T 2r78_A           12 AYRALFEHAIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGV-------------------------   63 (117)
T ss_dssp             HHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCS-------------------------
T ss_pred             HHHHHHhcCCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCcc-------------------------
Confidence            367889999999999999   9999999999999999999999999877654321                         


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                        +......+.+.+..++.+..+....+|||+.+|+.+++.|+.  +|.   ++++.+|||
T Consensus        64 ------------------~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT  117 (117)
T 2r78_A           64 ------------------DSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS  117 (117)
T ss_dssp             ------------------TTSHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred             ------------------chhHHHHHHHHHHcCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence                              111223455667778888899999999999999999999986  465   678899997

>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*

Probab=99.60  E-value=7.9e-15  Score=124.10  Aligned_cols=118  Identities=82%  Similarity=1.301  Sum_probs=105.7

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      +..+++.+++++++.|+..+++.|+++|++|++++||+.++++|+++..+..+.                          
T Consensus         4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~--------------------------   57 (146)
T 2v0u_A            4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPE--------------------------   57 (146)
T ss_dssp             CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT--------------------------
T ss_pred             HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCc--------------------------
Confidence            456788999999999985557999999999999999999999999987766553                          


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcccc
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVE  228 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke  228 (489)
                                      ........+..++..+..+..++...+++|..+|+.+...|++|.+|.+.+++++.+|||++++
T Consensus        58 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~  121 (146)
T 2v0u_A           58 ----------------TDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR  121 (146)
T ss_dssp             ----------------SCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC
T ss_pred             ----------------CChHHHHHHHHHHhcCCCcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH
Confidence                            5566677888899999999999999999999999999999999999999999999999999987

>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*

Probab=99.59  E-value=8.4e-15  Score=125.75  Aligned_cols=111  Identities=18%  Similarity=0.252  Sum_probs=85.3

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHh
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      ..+..+++.++++|+++|+   +|.|+++|++|++++||+++|++|+++..|..+.                        
T Consensus        16 ~~~~~l~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~------------------------   68 (130)
T 1d06_A           16 AHLRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEP------------------------   68 (130)
T ss_dssp             SCHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTT------------------------
T ss_pred             HHHHHHHhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCch------------------------
Confidence            4578899999999999999   9999999999999999999999999988776443                        


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHHcCCc----EEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeecc
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQRE----ITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD  222 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d  222 (489)
                                        ........+......+..    ...++..++|||+.||+.++++|+.+.  ...+++++.+|
T Consensus        69 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~D  128 (130)
T 1d06_A           69 ------------------YRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSG--GERFFTGFIRD  128 (130)
T ss_dssp             ------------------HHHHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEET--TEEEEEEEEEE
T ss_pred             ------------------hHHHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEE
Confidence                              111111223333333321    234667789999999999999999874  34568999999


Q ss_pred             CC
Q 042772          223 GS  224 (489)
Q Consensus       223 ~T  224 (489)
                      ||
T Consensus       129 IT  130 (130)
T 1d06_A          129 LT  130 (130)
T ss_dssp             CC
T ss_pred             Cc
Confidence            97

>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}

Probab=99.59  E-value=1.5e-14  Score=118.64  Aligned_cols=116  Identities=19%  Similarity=0.228  Sum_probs=102.3

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      .+..+++.+++++++.|+   ++.|+++|++|++++||++++++|+++..+..+.                         
T Consensus         8 ~~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-------------------------   59 (124)
T 3lyx_A            8 QRAKAFDYVFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPG-------------------------   59 (124)
T ss_dssp             HHHHGGGTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTT-------------------------
T ss_pred             HHHHHHhhcCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcc-------------------------
Confidence            467889999999999999   9999999999999999999999999987555443                         


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccc
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~k  227 (489)
                                       ........+..++..++.+..++...+++|+.+|+.+++.|+.|..|.+.+++++.+|||+++
T Consensus        60 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~  122 (124)
T 3lyx_A           60 -----------------DTEHITSEVISAVENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRK  122 (124)
T ss_dssp             -----------------THHHHHHHHHHHHHHTSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC-
T ss_pred             -----------------hhhHHHHHHHHHHHcCCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhh
Confidence                             344455678888899999999999999999999999999999999999999999999999987


Q ss_pred             c
Q 042772          228 E  228 (489)
Q Consensus       228 e  228 (489)
                      +
T Consensus       123 ~  123 (124)
T 3lyx_A          123 K  123 (124)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6

Probab=99.58  E-value=1.7e-14  Score=115.74  Aligned_cols=107  Identities=26%  Similarity=0.498  Sum_probs=94.5

Q ss_pred             CcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCC--ccccccccchhhhhhccccccchhHHHHHHHhhhccccccc
Q 042772           78 KNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRN--CSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNF  155 (489)
Q Consensus        78 ~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (489)
                      .+|+++|+..+++.|+|+|++|++++||+++|++|++  ..++..+.                                 
T Consensus         2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~---------------------------------   48 (110)
T 1byw_A            2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPC---------------------------------   48 (110)
T ss_dssp             CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTT---------------------------------
T ss_pred             CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCc---------------------------------
Confidence            5899999877789999999999999999999999998  55555443                                 


Q ss_pred             ccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          156 TLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                               ........+..++..+..+..++..++++|+.+|+.+++.|+++.+|.+.+++++.+|||++
T Consensus        49 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~  110 (110)
T 1byw_A           49 ---------TQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK  110 (110)
T ss_dssp             ---------CCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             ---------CCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence                     45566677888888999999999999999999999999999999999999999999999974

>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}

Probab=99.57  E-value=6.3e-15  Score=129.92  Aligned_cols=122  Identities=33%  Similarity=0.559  Sum_probs=108.7

Q ss_pred             hHHHHHHhccCcEEEECCCCCCC---CEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHH
Q 042772           68 DLATTLERIEKNFVITDPRIPDN---PIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLA  144 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~---~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (489)
                      .+..+++.+++++++.|.   ++   .|+++|++|++++||+.++++|+++..+..+.                      
T Consensus        26 ~~~~i~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~----------------------   80 (162)
T 3sw1_A           26 LLQSMVDASNDGIVVAEK---EGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDD----------------------   80 (162)
T ss_dssp             HHHHHHHTCSSEEEEEEE---ETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTC----------------------
T ss_pred             HHHHHHhhccCcEEEEeC---CCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCC----------------------
Confidence            467889999999999999   88   99999999999999999999999987665443                      


Q ss_pred             HhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          145 LWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                          ........+..++..+..+..++..++++|+.+|+.+.+.|+.|.+|.+.+++++.+|||
T Consensus        81 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiT  140 (162)
T 3sw1_A           81 --------------------RDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVS  140 (162)
T ss_dssp             --------------------CCCHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECH
T ss_pred             --------------------cCHHHHHHHHHHHhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCc
Confidence                                455566778889999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccc
Q 042772          225 DHVEPLRNRL  234 (489)
Q Consensus       225 e~ke~e~~~l  234 (489)
                      ++++++++..
T Consensus       141 e~k~~e~~l~  150 (162)
T 3sw1_A          141 RQVELERELA  150 (162)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998766543

>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*

Probab=99.53  E-value=4.8e-14  Score=122.88  Aligned_cols=120  Identities=31%  Similarity=0.624  Sum_probs=95.3

Q ss_pred             HHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcc
Q 042772           71 TTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNY  150 (489)
Q Consensus        71 ~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (489)
                      .+++.. ++++++|..-+++.|+|+|++|++++||+++|++|+++..+..++.-  ..+++                   
T Consensus        30 ~~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~--~~~~~-------------------   87 (149)
T 3d72_A           30 GPVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGM--VKPKS-------------------   87 (149)
T ss_dssp             CSCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSC--CCTTC-------------------
T ss_pred             HhhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCcccc--ccccc-------------------
Confidence            455554 89999993223999999999999999999999999998877654300  00000                   


Q ss_pred             cccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeecc
Q 042772          151 GVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD  222 (489)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d  222 (489)
                                .....+......+++++..++.+..++..+++||+.+|+.++++|++|.+|++.+++++.+|
T Consensus        88 ----------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D  149 (149)
T 3d72_A           88 ----------TRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE  149 (149)
T ss_dssp             ----------CCSSSCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred             ----------cccccChHHHHHHHHHHHCCCceEEEEEEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence                      00002667778889999999999999999999999999999999999999999999999877

>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}

Probab=99.52  E-value=3.9e-14  Score=128.02  Aligned_cols=123  Identities=13%  Similarity=0.138  Sum_probs=91.7

Q ss_pred             HHHhhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHH
Q 042772           62 DIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLY  141 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (489)
                      .++....+.+++++++++|+++|.   ++.|+++|+++++++||+++|++|+++..+....                   
T Consensus        17 ~~~~~~~l~~il~~~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~~-------------------   74 (152)
T 3mxq_A           17 MAKSRLLLSELLDQLSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKNILELFPES-------------------   74 (152)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGGG-------------------
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCCh-------------------
Confidence            334455689999999999999999   9999999999999999999999999986554221                   


Q ss_pred             HHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEE---------EEEee---ecCCCeeeEEEeecccccC
Q 042772          142 FLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITV---------QLINY---TKSGKKFWNLFHLQPMRDH  209 (489)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~k~g~~~~~~~~~~p~~~~  209 (489)
                                              .......+++++..+.+...         ++.++   +++|..+|..++++|++|.
T Consensus        75 ------------------------~~~~~~~l~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~  130 (152)
T 3mxq_A           75 ------------------------ADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSE  130 (152)
T ss_dssp             ------------------------HHHHHHHHHHHHHHTSCEEEECCSSSCSSCC----------CCEEEEEEEEEEECT
T ss_pred             ------------------------HHHHHHHHHHHHhcCCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEECC
Confidence                                    12234567888877765322         12232   3577888999999999999


Q ss_pred             CCCeeEEeeeeccCCcccccc
Q 042772          210 KGELQYFIGVQLDGSDHVEPL  230 (489)
Q Consensus       210 ~g~~~~~~~~~~d~Te~ke~e  230 (489)
                      +|++.+++.+.+|||+++.+.
T Consensus       131 ~G~v~gv~~ii~DVTe~~~a~  151 (152)
T 3mxq_A          131 DGTIEHVCLCVYDVTIQASQQ  151 (152)
T ss_dssp             TSCEEEEEEEEEEEECC----
T ss_pred             CCCEEEEEEEEEECCHHHhcc
Confidence            999999999999999998653

>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A

Probab=99.52  E-value=9.8e-14  Score=116.40  Aligned_cols=116  Identities=25%  Similarity=0.483  Sum_probs=102.0

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCC--ccccccccchhhhhhccccccchhHHHHHHHh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRN--CSFLELTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      +...++.++++++++|+..+++.|+++|++|++++||+.++++|++  ..++..+.                        
T Consensus        21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~------------------------   76 (138)
T 2l0w_A           21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPR------------------------   76 (138)
T ss_dssp             HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTT------------------------
T ss_pred             HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcc------------------------
Confidence            5667788999999999866689999999999999999999999998  56665543                        


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                                        ........+..++..+..+..++..++++|..+|+.+++.|+.+..|.+.+++++.+|||++
T Consensus        77 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~  138 (138)
T 2l0w_A           77 ------------------TQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK  138 (138)
T ss_dssp             ------------------CCHHHHHHHHHHTTCSSCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred             ------------------cchhHHHHHHHHHhhcCCceeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence                              45556677888888888899999999999999999999999999999999999999999974

>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}

Probab=99.48  E-value=1.8e-13  Score=114.88  Aligned_cols=112  Identities=13%  Similarity=0.141  Sum_probs=90.4

Q ss_pred             HHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccc
Q 042772           72 TLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYG  151 (489)
Q Consensus        72 ~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (489)
                      +++.+.+.+++.|+   ++.|+|+|++|++++||+++|++|+++..+..++                             
T Consensus         8 ~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~-----------------------------   55 (121)
T 2kdk_A            8 INVKPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQD-----------------------------   55 (121)
T ss_dssp             CCCCSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSS-----------------------------
T ss_pred             cccCCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHH-----------------------------
Confidence            45677889999999   9999999999999999999999999876555453                             


Q ss_pred             ccccccCcccccCCCHHHHHHHHHHHHcCC-cEEEEEEeeecCCCeeeEEEeecccccCC-CCeeEEeeeeccCCcccc
Q 042772          152 VYNFTLGCCLEISSDQATVSKIRDAVREQR-EITVQLINYTKSGKKFWNLFHLQPMRDHK-GELQYFIGVQLDGSDHVE  228 (489)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~g~~~~~~~~~~p~~~~~-g~~~~~~~~~~d~Te~ke  228 (489)
                                   ........+.+++..+. ....+....+|||+.+|+..+..|++|.. |.+.+++++.+||++.++
T Consensus        56 -------------d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~~  121 (121)
T 2kdk_A           56 -------------DHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHSE  121 (121)
T ss_dssp             -------------SHHHHHHHHHHHHTSSSCEEEEEEEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCCC
T ss_pred             -------------HHHHHHHHHHHHHhCCCCCccEEEEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccCC
Confidence                         22333445566666544 45778888999999999999999999986 567888999999998753

>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}

Probab=99.48  E-value=2.7e-13  Score=111.03  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=87.7

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      +..+++.+++++++.|+   ++.|+++|++|++++||+++|++|+++..+. ++                          
T Consensus         5 ~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~--------------------------   54 (114)
T 3luq_A            5 LRLFTEHAPAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PE--------------------------   54 (114)
T ss_dssp             HHHHHHTCSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TT--------------------------
T ss_pred             HHHHHhcCCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-Cc--------------------------
Confidence            67889999999999998   9999999999999999999999999976554 32                          


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEE-EeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQL-INYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                      ........+..++ .++....+. ...+++|+..|+.+++.|++|.+|.+.+++++.+|||
T Consensus        55 ----------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT  114 (114)
T 3luq_A           55 ----------------IGEEWKSVHRRGL-AGEVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT  114 (114)
T ss_dssp             ----------------CCHHHHHHHHHHH-TTCCEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred             ----------------cHHHHHHHHHHHh-cCCcceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence                            2333333444444 455555544 6778999999999999999999999999999999997

>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}

Probab=99.48  E-value=1.3e-13  Score=114.71  Aligned_cols=116  Identities=11%  Similarity=0.058  Sum_probs=88.6

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCcccc--ccccchhhhhhccccccchhHHHHHHH
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFL--ELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      .+..+++.++.++++.|+   ++.++++|++|.+++||++++++|....++  ..++                       
T Consensus         8 ~l~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~-----------------------   61 (125)
T 3nja_A            8 LLHTAESDAGIGSWVLHM---ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPD-----------------------   61 (125)
T ss_dssp             ---------CCEEEEEET---TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTT-----------------------
T ss_pred             HHHHHHHhCCeeEEEEEc---CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChh-----------------------
Confidence            367789999999999999   999999999999999999999999332222  2221                       


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCc
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSD  225 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te  225 (489)
                                         ........+..++..+..+..++...+++|+..|+.+...|++|.+|.+.+++++.+|||+
T Consensus        62 -------------------d~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe  122 (125)
T 3nja_A           62 -------------------DRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTE  122 (125)
T ss_dssp             -------------------THHHHHHHHHHHHHSCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred             -------------------HHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEeccc
Confidence                               2334455677788888889999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 042772          226 HVE  228 (489)
Q Consensus       226 ~ke  228 (489)
                      +|+
T Consensus       123 ~k~  125 (125)
T 3nja_A          123 HKQ  125 (125)
T ss_dssp             ---
T ss_pred             ccC
Confidence            874

>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A

Probab=99.47  E-value=6.4e-14  Score=123.49  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=97.5

Q ss_pred             hhHHHHHHhccCcEEEEC-CCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHH
Q 042772           67 IDLATTLERIEKNFVITD-PRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d-~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      ..+..+++.++.++++.| +   ++.|+++|++|++++||+  +++|+++..+..+.                       
T Consensus        17 ~~~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~-----------------------   68 (158)
T 3k3c_A           17 EDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPEL-----------------------   68 (158)
T ss_dssp             HHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGG-----------------------
T ss_pred             HHHHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCch-----------------------
Confidence            457889999999999999 8   999999999999999999  99999976554432                       


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEee--e--cC-CCeeeEEEeecccccCCCCeeEEeeee
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINY--T--KS-GKKFWNLFHLQPMRDHKGELQYFIGVQ  220 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--k~-g~~~~~~~~~~p~~~~~g~~~~~~~~~  220 (489)
                                         ........+++++..+++...+...+  .  .+ |...|+.++++|++|.+|.+.+++++.
T Consensus        69 -------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~  129 (158)
T 3k3c_A           69 -------------------EGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIV  129 (158)
T ss_dssp             -------------------GGTTHHHHHHHHHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             -------------------hHHHHHHHHHHHHHhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEE
Confidence                               22234456788888888866554333  2  22 778999999999999999999999999


Q ss_pred             ccCCccccccccc
Q 042772          221 LDGSDHVEPLRNR  233 (489)
Q Consensus       221 ~d~Te~ke~e~~~  233 (489)
                      +|||++++++++.
T Consensus       130 ~DITe~k~~e~~l  142 (158)
T 3k3c_A          130 DDVTSRVRARQAA  142 (158)
T ss_dssp             EECHHHHHHHHHH
T ss_pred             EehhHHHHHHHHH
Confidence            9999999877654

>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}

Probab=99.47  E-value=1.5e-13  Score=113.76  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=87.6

Q ss_pred             HHhhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHH
Q 042772           63 IRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYF  142 (489)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  142 (489)
                      ++....+..+++.+++++++.|+   ++.|+++|++|++++||+++|++|+++..+.... .                  
T Consensus         9 e~~~~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~-~------------------   66 (118)
T 3olo_A            9 ELEFKFAHYLINNAVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDF-A------------------   66 (118)
T ss_dssp             HHHHHHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTG-G------------------
T ss_pred             HHHHHHHHHHHhcCCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCChhhccccc-C------------------
Confidence            34445577899999999999999   9999999999999999999999999987665332 0                  


Q ss_pred             HHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeecc
Q 042772          143 LALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD  222 (489)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d  222 (489)
                                           ...       +..+..+..+..+....+++|+.+|+.++..|+.+..  ..+++++.+|
T Consensus        67 ---------------------~~~-------~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~D  116 (118)
T 3olo_A           67 ---------------------LHD-------WEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQE--RRFSCVFVRE  116 (118)
T ss_dssp             ---------------------GSC-------HHHHHHHSEEEEEEEEECTTCCEEEEEEEEEEEEETT--EEEEEEEEEE
T ss_pred             ---------------------HHH-------HHHHHhcCcEEEEEEEEccCCCEEEEEEEEEEEEECC--ccEEEEEEEe
Confidence                                 011       2334456678889889999999999999999998753  3467899999


Q ss_pred             CC
Q 042772          223 GS  224 (489)
Q Consensus       223 ~T  224 (489)
                      ||
T Consensus       117 IT  118 (118)
T 3olo_A          117 KS  118 (118)
T ss_dssp             C-
T ss_pred             CC
Confidence            97

>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}

Probab=99.46  E-value=6.4e-13  Score=112.26  Aligned_cols=119  Identities=19%  Similarity=0.185  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhh----hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhc--CCCccccccccchhhhhh
Q 042772           56 RAERERDIRQGI----DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEIL--GRNCSFLELTEYTREEIL  129 (489)
Q Consensus        56 ~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~--g~~~~~l~~~~~~~~~~~  129 (489)
                      +++|++.+++..    .+..+++.++++|+++|+   +|.|+++|++|++++||+++|++  |+++..+..         
T Consensus         2 ~t~r~~~e~~L~~~~~~~~~l~e~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~---------   69 (126)
T 3bwl_A            2 NAERKRREKRLEETSSRLEALFENSPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF---------   69 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC---------
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhCCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC---------
Confidence            456665555443    577899999999999999   99999999999999999999995  555432221         


Q ss_pred             ccccccchhHHHHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccC
Q 042772          130 GRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDH  209 (489)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~  209 (489)
                                                          +...+.........+.....+....+|||+.+|+.++..|+.+ 
T Consensus        70 ------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~-  112 (126)
T 3bwl_A           70 ------------------------------------DAEDVQTQLSGFSVDERRKFEGLYERRDGSTMSVEVHLLRFNL-  112 (126)
T ss_dssp             ------------------------------------CHHHHHHHHHTCCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE-
T ss_pred             ------------------------------------CHHHHHHHHHHHhcCCCcceEEEEEeCCCCEEEEEEEeEEEec-
Confidence                                                1111111111111233445566667999999999999888743 


Q ss_pred             CCCeeEEeeeeccCC
Q 042772          210 KGELQYFIGVQLDGS  224 (489)
Q Consensus       210 ~g~~~~~~~~~~d~T  224 (489)
                      .|. .+++++.+|||
T Consensus       113 ~~~-~~~~~~~~DIT  126 (126)
T 3bwl_A          113 EGE-DRFLAISRDIT  126 (126)
T ss_dssp             TTE-EEEEEEEEEC-
T ss_pred             CCc-EEEEEEEEeCC
Confidence            444 35788999997

>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}

Probab=99.45  E-value=1.6e-13  Score=114.70  Aligned_cols=112  Identities=12%  Similarity=0.041  Sum_probs=90.1

Q ss_pred             ccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCc-cccccccchhhhhhccccccchhHHHHHHHhhhcccccc
Q 042772           76 IEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNC-SFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYN  154 (489)
Q Consensus        76 ~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (489)
                      +.++++..|.  +++.++|+|++|++++||+++|++|... ..+..|+                                
T Consensus         2 a~~giw~~d~--~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpd--------------------------------   47 (115)
T 3h9w_A            2 TKAIPWKINW--QTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPE--------------------------------   47 (115)
T ss_dssp             -CCEEEEEET--TTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHH--------------------------------
T ss_pred             cceEEEEEEc--CCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHH--------------------------------
Confidence            3578888885  3888999999999999999999998221 1122232                                


Q ss_pred             cccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccccccc
Q 042772          155 FTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLR  231 (489)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~e~  231 (489)
                                ........+.+++..+..+..++...++||+..|+.....|++|.+|+++.++|+..|||++|++++
T Consensus        48 ----------d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~  114 (115)
T 3h9w_A           48 ----------DQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH  114 (115)
T ss_dssp             ----------HHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred             ----------HHHHHHHHHHHHHhcCCcccEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence                      2334456678888888889999999999999999999999999999999999999999999998775

>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}

Probab=99.45  E-value=3.5e-13  Score=117.85  Aligned_cols=122  Identities=13%  Similarity=0.165  Sum_probs=102.9

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccc--cccccchhhhhhccccccchhHHHHHHH
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSF--LELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      .+..+++.+..+++..|+   ++.++|+|++|.+++||+.+++.|....+  +..|+                       
T Consensus        10 rl~~~~~~~~~g~w~~d~---~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpd-----------------------   63 (142)
T 3mr0_A           10 RFQLAVSGASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPD-----------------------   63 (142)
T ss_dssp             CHHHHHHHTTCEEEEECT---TTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTT-----------------------
T ss_pred             HHHHHHHhCCcEEEEEEc---CCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHH-----------------------
Confidence            467889999999999999   88999999999999999999988753322  22232                       


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCc
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSD  225 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te  225 (489)
                                         ........+..++..+.++..+....++||+..|+.....|++|.+|.+..++|+..|||+
T Consensus        64 -------------------D~~~~~~~~~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITe  124 (142)
T 3mr0_A           64 -------------------DRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTD  124 (142)
T ss_dssp             -------------------THHHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHH
T ss_pred             -------------------HHHHHHHHHHHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCch
Confidence                               3344556788888889999999999999999999999999999999999999999999999


Q ss_pred             ccccccccc
Q 042772          226 HVEPLRNRL  234 (489)
Q Consensus       226 ~ke~e~~~l  234 (489)
                      +|+++++..
T Consensus       125 rk~~E~~L~  133 (142)
T 3mr0_A          125 RKRDEDALR  133 (142)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998876653

>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}

Probab=99.41  E-value=4.4e-13  Score=122.87  Aligned_cols=119  Identities=12%  Similarity=0.121  Sum_probs=95.4

Q ss_pred             hhHHHHHHhccCcEEEEC-CCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHH
Q 042772           67 IDLATTLERIEKNFVITD-PRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d-~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      ..+..+++.+++++++.| +   ++.|+++|++|++++||+  +++|+++..+..+.                       
T Consensus        37 ~~l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~-----------------------   88 (185)
T 3kx0_X           37 EDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPEL-----------------------   88 (185)
T ss_dssp             HHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTS-----------------------
T ss_pred             HHHHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCch-----------------------
Confidence            347889999999999999 8   999999999999999999  99999976554332                       


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeee---cC--CCeeeEEEeecccccCCCCeeEEeeee
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYT---KS--GKKFWNLFHLQPMRDHKGELQYFIGVQ  220 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~--g~~~~~~~~~~p~~~~~g~~~~~~~~~  220 (489)
                                         ........+++++..++.+..+...++   ++  |...|+.+.+.|++|.+|.+.+++++.
T Consensus        89 -------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~  149 (185)
T 3kx0_X           89 -------------------EGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIV  149 (185)
T ss_dssp             -------------------CSSSSHHHHHHHHHHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             -------------------hhhhHHHHHHHHHHcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEE
Confidence                               122233457777878888776544432   22  888999999999999999999999999


Q ss_pred             ccCCcccccccc
Q 042772          221 LDGSDHVEPLRN  232 (489)
Q Consensus       221 ~d~Te~ke~e~~  232 (489)
                      +|||++++++++
T Consensus       150 ~DITerk~~e~~  161 (185)
T 3kx0_X          150 DDVTSRVRARQA  161 (185)
T ss_dssp             EECHHHHTTCC-
T ss_pred             EeCCHHHHHHHH
Confidence            999999998877

>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}

Probab=99.40  E-value=1.2e-12  Score=107.82  Aligned_cols=115  Identities=10%  Similarity=0.142  Sum_probs=94.8

Q ss_pred             hhhHHHHHHhccCcEEEECCCCCC-CCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHH
Q 042772           66 GIDLATTLERIEKNFVITDPRIPD-NPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLA  144 (489)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~d~~~~~-~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (489)
                      ...+..+++.+++++++.|+   + +.|+++|++|++++||++++++|+...++..-.                      
T Consensus        10 ~~~~~~~~~~~~~~i~~~d~---~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~----------------------   64 (125)
T 3eeh_A           10 ERRVRELTEATNDILWEFTA---DLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIH----------------------   64 (125)
T ss_dssp             CHHHHHHHSCCCCEEEEEET---TSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBC----------------------
T ss_pred             HHHHHHHHhcCCceEEEEEc---CCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcC----------------------
Confidence            34578899999999999999   8 999999999999999999999998743332111                      


Q ss_pred             HhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          145 LWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                         ..+...+......+..++.+..++...+++|+..|+.+...|+.|..|.+.+++++.+|||
T Consensus        65 -------------------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT  125 (125)
T 3eeh_A           65 -------------------PEDRELMKDTMQSLMDGESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT  125 (125)
T ss_dssp             -------------------HHHHHHHHHHHHHHHTTCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred             -------------------HHHHHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence                               0233333344444778888999999999999999999999999999999999999999997

>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}

Probab=99.39  E-value=6.7e-13  Score=110.86  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=83.5

Q ss_pred             HHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcc
Q 042772           71 TTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNY  150 (489)
Q Consensus        71 ~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (489)
                      .+++.+++++++.|+   ++.|+++|++|++++||+.++++|+++..+..+.                            
T Consensus         3 ~l~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~----------------------------   51 (126)
T 3mjq_A            3 NFLETIEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSMHILTITSAG----------------------------   51 (126)
T ss_dssp             TTGGGCSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTT----------------------------
T ss_pred             hHHhhCCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCch----------------------------
Confidence            467889999999999   9999999999999999999999999876554332                            


Q ss_pred             cccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcccccc
Q 042772          151 GVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPL  230 (489)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~ke~e  230 (489)
                                    ........+...+..+.. ..++...+++|..+|+.+...|+.+  +....++++.+|||++++++
T Consensus        52 --------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~  114 (126)
T 3mjq_A           52 --------------KMAEGEKILAELFAGKKE-SLPLSLEKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERAS  114 (126)
T ss_dssp             --------------CHHHHHHHHHHHHHTCCS-EEEEEEECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC------
T ss_pred             --------------hHHHHHHHHHHHHhCCCc-eeEEEEEccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhh
Confidence                          222233344554544444 7788888999999999999998765  34567899999999999888


Q ss_pred             ccccch
Q 042772          231 RNRLSE  236 (489)
Q Consensus       231 ~~~l~~  236 (489)
                      ++....
T Consensus       115 ~~~~~~  120 (126)
T 3mjq_A          115 SPPFLE  120 (126)
T ss_dssp             ------
T ss_pred             cccchh
Confidence            776544

>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}

Probab=99.37  E-value=7.9e-13  Score=127.22  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=86.2

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhc------------CCChhhhcCCCccccccccchhhhhhcccccc
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELT------------EYTREEILGRNCSFLELTEYTREEILGRNCST  135 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~------------gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~  135 (489)
                      .+.++|+.+.++|+++|+   +|.|+|+|++|++++            ||+++|++|+++..+..               
T Consensus        23 ~l~~iLd~~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~---------------   84 (233)
T 3vol_A           23 RIKSALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK---------------   84 (233)
T ss_dssp             HHHHHHTTSSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS---------------
T ss_pred             HHHHHHhcCCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC---------------
Confidence            367899999999999999   999999999999987            88889999998876642               


Q ss_pred             chhHHHHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeE
Q 042772          136 YTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQY  215 (489)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~  215 (489)
                                                    ++.....+++.+.  ..+..++   +.+|.  |+.++++|++|.+|++.+
T Consensus        85 ------------------------------~~~~~~~~~~~~~--~~~~~~~---~~~g~--~~~~~~~Pi~d~~G~~~g  127 (233)
T 3vol_A           85 ------------------------------NPAHQRHLLANLT--GVHKAEL---NLGGR--RFSLDVVPVFNDANERLG  127 (233)
T ss_dssp             ------------------------------SHHHHHHHHHTCC--SCEEEEE---EETTE--EEEEEEEEEECTTCCEEE
T ss_pred             ------------------------------CHHHHHHHHHhcc--cceeEEE---EECCE--EEEEEEEEEECCCCCEEE
Confidence                                          2223333444332  2455554   34664  668999999999999999


Q ss_pred             EeeeeccCCcccccccc
Q 042772          216 FIGVQLDGSDHVEPLRN  232 (489)
Q Consensus       216 ~~~~~~d~Te~ke~e~~  232 (489)
                      ++++.+|||++++.+++
T Consensus       128 ~v~~~~DITe~~~~e~e  144 (233)
T 3vol_A          128 SAVQWTDRTEEHRAEQE  144 (233)
T ss_dssp             EEEEEEECHHHHHHHHH
T ss_pred             EEEEEehhhHHHHHHHH
Confidence            99999999999876554

>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}

Probab=99.36  E-value=1.6e-12  Score=107.46  Aligned_cols=111  Identities=13%  Similarity=0.083  Sum_probs=96.3

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccc--cccchhhhhhccccccchhHHHHHHHh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLE--LTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      +..+++.+++++++.|+   ++.++++|++|++++||+++|++|+...++.  .|+                        
T Consensus         6 ~~~l~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~------------------------   58 (118)
T 3icy_A            6 LQALVDNIPAAIYHLDV---SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHD------------------------   58 (118)
T ss_dssp             HHHHHTTCCCCCEEECT---TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGG------------------------
T ss_pred             HHHHHhcCCceEEEEEc---CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHH------------------------
Confidence            67889999999999999   9999999999999999999999988754432  232                        


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                        ......+.+..++..+..+..+....+++|+..|+.....|++|.+|.+.+++++.+|||
T Consensus        59 ------------------d~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT  118 (118)
T 3icy_A           59 ------------------DRHMLSNAYSKLREAKHSLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT  118 (118)
T ss_dssp             ------------------GHHHHHHHHHHHHHSCCEEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred             ------------------HHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence                              333445667778888889999999999999999999999999999999999999999997

>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}

Probab=99.34  E-value=1.7e-12  Score=113.54  Aligned_cols=114  Identities=11%  Similarity=0.085  Sum_probs=81.0

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHh
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      ..+.++++.+.++|+++|.   +|.|+++|++|++++||+++|++|+++..+..+... +        .+..        
T Consensus         7 ~~l~~i~~~~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~-~--------~~~~--------   66 (129)
T 3mfx_A            7 ETIELFIQHLTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQ-A--------RYDN--------   66 (129)
T ss_dssp             HHHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCC-G--------GGGC--------
T ss_pred             HHHHHHHhcCCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhH-H--------HHHH--------
Confidence            4578899999999999999   999999999999999999999999998766544310 0        0000        


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHH----cCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeecc
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVR----EQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD  222 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d  222 (489)
                                            ........-.    ....+..++...+|||+.||+.++++|+.+.+   ..|+++.+|
T Consensus        67 ----------------------~~~~~~~~~~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~~~~---~~~v~~~~~  121 (129)
T 3mfx_A           67 ----------------------LLSHDVQLGTNCGQPVQHPAQETTLICASGKAKDVELSISYIPGHE---PMFVMVMHD  121 (129)
T ss_dssp             ----------------------TTC----------CCSCEEEEEEEEECTTSCEEEEEEEEEEECSSS---CEEEEEEEE
T ss_pred             ----------------------HHHHHHhcCcccccccCCCceEEEEEcCCCCEEEEEEEEEEecCCC---cEEEEEEec
Confidence                                  0000000000    11234578888999999999999999998433   358899898


Q ss_pred             CCc
Q 042772          223 GSD  225 (489)
Q Consensus       223 ~Te  225 (489)
                      +..
T Consensus       122 ~~~  124 (129)
T 3mfx_A          122 LEH  124 (129)
T ss_dssp             C--
T ss_pred             hhh
Confidence            753

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.34  E-value=5.6e-12  Score=122.11  Aligned_cols=139  Identities=14%  Similarity=0.062  Sum_probs=110.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..|++...++.|+.+.||++...  +..+++|.........   ...+.+|..+++.+. +..++++++++...+..|+|
T Consensus        14 ~~~~~~~~~~g~s~~~v~~~~~~--~~~~vlK~~~~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv   88 (263)
T 3tm0_A           14 EKYRCVKDTEGMSPAKVYKLVGE--NENLYLKMTDSRYKGT---TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL   88 (263)
T ss_dssp             TTSEEEECCSCCSSSEEEEEECS--SCEEEEEEECGGGTTS---TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred             ccceeEeeccCCCCCeEEEEECC--CCcEEEEeCCcccCCC---HHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence            35888889999999999998744  6789999886532111   234677999999884 67888999999888899999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC--------------------------------------  426 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~--------------------------------------  426 (489)
                      |||++|.+|.+.+..       ......++.+++.+|..||+                                      
T Consensus        89 ~e~i~G~~l~~~~~~-------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (263)
T 3tm0_A           89 MSEADGVLCSEEYED-------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED  161 (263)
T ss_dssp             EECCSSEEHHHHCCT-------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTT
T ss_pred             EEecCCeehhhccCC-------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccc
Confidence            999999999876321       12234577889999999998                                      


Q ss_pred             ---------------------CCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          427 ---------------------LGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       427 ---------------------~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                                           ..++|+|++|.||+++.++.+.|+||+.+.
T Consensus       162 ~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             CSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                                 458999999999999876556799999875

>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}

Probab=99.33  E-value=7.1e-12  Score=106.65  Aligned_cols=105  Identities=15%  Similarity=0.223  Sum_probs=79.1

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcC------------CChhhhcCCCccccccccchhhhhhccccc
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTE------------YTREEILGRNCSFLELTEYTREEILGRNCS  134 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~g------------y~~~e~~g~~~~~l~~~~~~~~~~~~~~~~  134 (489)
                      ..+.++|+.++++|+++|.   +|.|+|+|++|++++|            |++++++|+++..+..              
T Consensus         5 ~rl~~il~~~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~--------------   67 (121)
T 4hi4_A            5 ARIASALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK--------------   67 (121)
T ss_dssp             HHHHHHHTTSSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS--------------
T ss_pred             HHHHHHHhcCCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC--------------
Confidence            3478999999999999999   9999999999999985            8999999999765542              


Q ss_pred             cchhHHHHHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCee
Q 042772          135 TYTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQ  214 (489)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~  214 (489)
                                                     +......+.+...  ..+..++.   .+|.  |..++++|++|.+|++.
T Consensus        68 -------------------------------~~~~~~~~~~~~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~  109 (121)
T 4hi4_A           68 -------------------------------NPAHQRHLLANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANARL  109 (121)
T ss_dssp             -------------------------------SHHHHHHHHHHCS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEE
T ss_pred             -------------------------------CHHHHHHHHhCcC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEE
Confidence                                           1222222333322  34554442   3565  34789999999999999


Q ss_pred             EEeeeeccCCcc
Q 042772          215 YFIGVQLDGSDH  226 (489)
Q Consensus       215 ~~~~~~~d~Te~  226 (489)
                      +++++.+|||++
T Consensus       110 g~v~~~~DiTee  121 (121)
T 4hi4_A          110 GSAVQWTDRTEE  121 (121)
T ss_dssp             EEEEEEEECC--
T ss_pred             EEEEEEEEecCC
Confidence            999999999974

>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*

Probab=99.31  E-value=6.1e-12  Score=110.26  Aligned_cols=120  Identities=21%  Similarity=0.317  Sum_probs=81.6

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHh
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      ..+..+++.+++++++.|+   ++.|+++|++|++++||+.++++|+++..+..+.                        
T Consensus        40 ~~~~~~l~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~------------------------   92 (167)
T 1v9y_A           40 GIFFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRD------------------------   92 (167)
T ss_dssp             CCHHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGG------------------------
T ss_pred             HHHHHHHHhCCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCChhhccCcc------------------------
Confidence            4578899999999999999   9999999999999999999999999987664432                        


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHHcCCc----EEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeecc
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQRE----ITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD  222 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d  222 (489)
                                        ........+......+..    +..++...+++|..+|+.+.+.|+ +..|... ++++.+|
T Consensus        93 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~-~~~~~~D  152 (167)
T 1v9y_A           93 ------------------LRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKVY-YLALVRD  152 (167)
T ss_dssp             ------------------GTTTHHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEEE-EEEEEEC
T ss_pred             ------------------ccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCEE-EEEEEec
Confidence                              111112223333333222    455677789999999999999999 5667765 8999999


Q ss_pred             CCccccccccc
Q 042772          223 GSDHVEPLRNR  233 (489)
Q Consensus       223 ~Te~ke~e~~~  233 (489)
                      ||++++.+++.
T Consensus       153 iT~~~~~e~~l  163 (167)
T 1v9y_A          153 ASVEMAQKEQT  163 (167)
T ss_dssp             -----------
T ss_pred             CcHHHHHHHHH
Confidence            99999877654

>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}

Probab=99.22  E-value=4e-11  Score=107.92  Aligned_cols=118  Identities=15%  Similarity=0.155  Sum_probs=94.6

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHh---hHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHH
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDS---FLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~---~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      +..+|+.++++|+++|.   ++.|+|+|++   +++++| ..++++||++..+..+                        
T Consensus        21 l~~IL~~~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~------------------------   72 (151)
T 2qkp_A           21 ANLILNHLPLEITFVNK---DDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPP------------------------   72 (151)
T ss_dssp             HHHHHHHSSSEEEEEET---TSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCH------------------------
T ss_pred             HHHHHHhCCCceEEEcC---CCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCH------------------------
Confidence            67899999999999999   9999999999   999999 6689999998654432                        


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecC-CCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKS-GKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                         .....+..+..+++.++....++.....+ |  .++..+..|++|++|++.+.+.+.+|+|
T Consensus        73 -------------------~~~~~v~~i~~~l~~g~~~~~~~~~~~~~~~--~~v~v~~~Pi~d~~G~~~G~vev~~Dit  131 (151)
T 2qkp_A           73 -------------------KVLDKVKKVFELLRNGQRDKVNMWFQSERLG--KFVYVTYAAVRDQAGDFQGVLEYVQDIK  131 (151)
T ss_dssp             -------------------HHHHHHHHHHHHHHTTSBSEEEEEEEETTTT--EEEEEEEEEEECTTCCEEEEEEEEEECG
T ss_pred             -------------------HHHHHHHHHHHHHHcCCccEEEEEEecCCCC--eEEEEEEEEEECCCCCEEEEEEEEEECH
Confidence                               12334567788888888887776654333 4  3568889999999999999999999999


Q ss_pred             ccccccccccc
Q 042772          225 DHVEPLRNRLS  235 (489)
Q Consensus       225 e~ke~e~~~l~  235 (489)
                      +.++.++++..
T Consensus       132 ~l~~le~~r~~  142 (151)
T 2qkp_A          132 PFFELDSEFNR  142 (151)
T ss_dssp             GGGGGGGC---
T ss_pred             HHHhhhhhhhc
Confidence            99887776543

>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.19  E-value=8.2e-11  Score=97.65  Aligned_cols=106  Identities=14%  Similarity=0.121  Sum_probs=81.9

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      ...+++.++++++++|.   ++.|+++|+++++++||++++++|+++..+..+.                          
T Consensus         9 ~~~il~~~~~~i~~~D~---~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~--------------------------   59 (115)
T 3b33_A            9 PSAILNNMVTATLILDD---GLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHA--------------------------   59 (115)
T ss_dssp             HHHHHHHCSSEEEEECT---TCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEE--------------------------
T ss_pred             HHHHHhhcCceEEEECC---CCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCcc--------------------------
Confidence            34689999999999999   9999999999999999999999999976443221                          


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHcCCcEE-EEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVREQREIT-VQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                     ...   ...+.+++..++... .++... ++|+.+|+.+++.|+.+ +|. .+++.+.+|++
T Consensus        60 ---------------~~~---~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~  115 (115)
T 3b33_A           60 ---------------SLD---LALLTQPLQSGQSITDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID  115 (115)
T ss_dssp             ---------------ECC---THHHHHHHHHCCCEEEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred             ---------------chh---hHHHHHHHHcCCcccCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence                           011   123455666666643 344433 89999999999999999 887 68888889874

>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5

Probab=99.18  E-value=1.1e-11  Score=103.36  Aligned_cols=101  Identities=17%  Similarity=0.240  Sum_probs=71.8

Q ss_pred             ccCcEEEECCCCCC-CCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccc
Q 042772           76 IEKNFVITDPRIPD-NPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYN  154 (489)
Q Consensus        76 ~~~~~~i~d~~~~~-~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (489)
                      ..++|+++|+   + |.|+++|++|++++||+++|++|+++..+..+.                                
T Consensus         7 ~~~~i~~~d~---~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~--------------------------------   51 (114)
T 1ll8_A            7 FNKAIFTVDA---KTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRS--------------------------------   51 (114)
T ss_dssp             TTCEEEEEET---TTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCT--------------------------------
T ss_pred             CCceEEEEEC---CCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcc--------------------------------
Confidence            3479999999   8 999999999999999999999999987665443                                


Q ss_pred             cccCcccccCCCHHHHHHHHHH-HHc-CCcE---EEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          155 FTLGCCLEISSDQATVSKIRDA-VRE-QREI---TVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~---~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                 +......+.+. +.. +...   ..++...+|||+.+|+.++++|+.+..+  .+++++..|++
T Consensus        52 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v~~~~~~~~~~~~--~~~v~~~~~~~  113 (114)
T 1ll8_A           52 -----------DSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIPVSVWMKRMRQERR--LCCVVVLEPVE  113 (114)
T ss_dssp             -----------TTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTCCCEEEECCEECCBSSSS--BEEEEEEEECC
T ss_pred             -----------hhHHHHHHHHHhhccCCcceeccCcEEEEEecCCCEEEEEEEEEeeccCCc--cEEEEEEeecC
Confidence                       11111111111 011 1100   1234567999999999999999987654  47888888875

>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}

Probab=99.17  E-value=3.4e-11  Score=100.58  Aligned_cols=107  Identities=12%  Similarity=0.091  Sum_probs=76.2

Q ss_pred             hhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHH
Q 042772           66 GIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      ...+..+++.+++++++.|+   ++.|+++|++|++++||++++++|+++..+..++                       
T Consensus        18 ~~~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-----------------------   71 (125)
T 3fc7_A           18 RKKFESLVSDSPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSE-----------------------   71 (125)
T ss_dssp             --------CCSCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHH-----------------------
T ss_pred             HHHHHHHHhcCCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHH-----------------------
Confidence            34577899999999999999   9999999999999999999999999977555222                       


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCC-eeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGK-KFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~-~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                         ...............++..      ..++|. ..|+.+++.|+.+. |...+++++.+|||
T Consensus        72 -------------------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT  125 (125)
T 3fc7_A           72 -------------------AANQRLEAGKSAVENGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT  125 (125)
T ss_dssp             -------------------HHHHHHHHHHHHHHHTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred             -------------------HHHHHHHHHHHHhcCCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence                               1111122234445555544      345666 88999999998876 67788999999997

>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}

Probab=99.17  E-value=5.4e-11  Score=100.50  Aligned_cols=106  Identities=15%  Similarity=0.103  Sum_probs=84.1

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      ...+++++++++|++.|+   ++.|+++|++|++++||+++|++|+++..+..+.                         
T Consensus        13 ~~~~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~-------------------------   64 (118)
T 3fg8_A           13 GRENLYFQGGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPET-------------------------   64 (118)
T ss_dssp             CCCCSSSCTTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGG-------------------------
T ss_pred             hHHHHHhhCCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCcc-------------------------
Confidence            345778899999999999   9999999999999999999999999976554332                         


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                                       ........+++++..++.++.++.....+|  .|+.+.+.|+.+  |    ++++.+|||++
T Consensus        65 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~p~~~--g----~v~~~~DITer  118 (118)
T 3fg8_A           65 -----------------QGSYFDALCRKVLATGREQQTRVDSLYSPG--MTIEVTAAADSG--A----LVVHFRDVTAE  118 (118)
T ss_dssp             -----------------TTSHHHHHHHHHHHHCCCEEEEEECSSSTT--CEEEEEEEEETT--E----EEEEEEECSCC
T ss_pred             -----------------chHHHHHHHHHHHHcCCceEEEEEEEcCCC--eEEEEEEEEcCC--c----EEEEEEeccCC
Confidence                             233455678888889999888543333466  578888899865  3    78889999985

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.15  E-value=6.6e-11  Score=113.36  Aligned_cols=135  Identities=12%  Similarity=0.051  Sum_probs=97.4

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCC--cceeeEEEEeCCeEEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF--LPTLYASFQTSTHICLI  384 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn--Iv~l~~~~~~~~~~~lV  384 (489)
                      .+.+....+.|..+.||++.. .+|..+++|.....      ....+..|..+++.+.+.+  +++++++....+..++|
T Consensus        21 ~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v   93 (264)
T 1nd4_A           21 GYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG------ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLL   93 (264)
T ss_dssp             TCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEE
T ss_pred             CCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc------cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEE
Confidence            344433334666799999964 45778999987543      1134567888888885434  56788888877889999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC------------------------------------
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG------------------------------------  428 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g------------------------------------  428 (489)
                      |||++|.+|.  ...     ...   ..++.+++..|..||+..                                    
T Consensus        94 ~e~i~G~~l~--~~~-----~~~---~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (264)
T 1nd4_A           94 LGEVPGQDLL--SSH-----LAP---AEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ  163 (264)
T ss_dssp             EECCSSEETT--TSC-----CCH---HHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGT
T ss_pred             EEecCCcccC--cCc-----CCH---hHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhcc
Confidence            9999998883  211     122   245667778888888643                                    


Q ss_pred             ----------------------CeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          429 ----------------------IIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       429 ----------------------IvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                                            ++|+|++|.||+++.++.+.|+||+.+...
T Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g  215 (264)
T 1nd4_A          164 GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVA  215 (264)
T ss_dssp             TCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             CccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence                                  999999999999987766679999998643

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.14  E-value=3.6e-11  Score=123.23  Aligned_cols=106  Identities=9%  Similarity=-0.002  Sum_probs=89.9

Q ss_pred             EEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCc
Q 042772           80 FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGC  159 (489)
Q Consensus        80 ~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (489)
                      +...|+   |+.|+|||++|+.++||+++|++|+++..+..|+                                     
T Consensus       254 ~~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpd-------------------------------------  293 (361)
T 4f3l_A          254 TSRHSL---EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVD-------------------------------------  293 (361)
T ss_dssp             EEEECT---TSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHH-------------------------------------
T ss_pred             EEEEcC---CceEEEECChhhhhhCcCHHHHcCCCHHHeECHH-------------------------------------
Confidence            445566   9999999999999999999999999987777665                                     


Q ss_pred             ccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccC-CCCeeEEeeeeccCCcccccc
Q 042772          160 CLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDH-KGELQYFIGVQLDGSDHVEPL  230 (489)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~-~g~~~~~~~~~~d~Te~ke~e  230 (489)
                           ........++..+..++..+.+....+|||+..|++....|++|. .|++.+++++.+|||+++..+
T Consensus       294 -----D~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~  360 (361)
T 4f3l_A          294 -----DLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA  360 (361)
T ss_dssp             -----HHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence                 233344557777778877888888999999999999999999998 799999999999999987543

>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}

Probab=99.14  E-value=8.3e-11  Score=100.08  Aligned_cols=93  Identities=14%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             HHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcc
Q 042772           71 TTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNY  150 (489)
Q Consensus        71 ~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (489)
                      ..|+.+.+.+++.|+   +|.|+|+|+++++++||+++|++|+++..+..|+                            
T Consensus         3 ~lle~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~----------------------------   51 (111)
T 2vlg_A            3 FPLQTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEE----------------------------   51 (111)
T ss_dssp             ------CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGG----------------------------
T ss_pred             chhhcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHh----------------------------
Confidence            467889999999998   9999999999999999999999999976666554                            


Q ss_pred             cccccccCcccccCCCHHHHHHHHHHHHc-CCcEEEEEEeeecCCCeeeEEEeecccccCCCC
Q 042772          151 GVYNFTLGCCLEISSDQATVSKIRDAVRE-QREITVQLINYTKSGKKFWNLFHLQPMRDHKGE  212 (489)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~  212 (489)
                                     |.+.+   ++.+.. ......+...++|||+.+|++.++++++|..+.
T Consensus        52 ---------------D~~~~---~~~~~~~~~~~~~e~r~~~kdG~~~wve~~~~~v~~~~~~   96 (111)
T 2vlg_A           52 ---------------DQFLV---ESYFYNEHHLMPCTFRFIKKDHTIVWVEAAVEIVTTRAER   96 (111)
T ss_dssp             ---------------GHHHH---HHHHHCSCCSSCEEEEEECTTSCEEEEEEEEEEC------
T ss_pred             ---------------HHHHH---HHHHhccCCCccEEEEEEcCCCCEEEEEEEEEEEecccCC
Confidence                           33332   233322 233456777789999999999999999987653

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.08  E-value=2.6e-10  Score=115.90  Aligned_cols=140  Identities=18%  Similarity=0.262  Sum_probs=104.2

Q ss_pred             ccccccCCCCceEEEEEEEcCCCcEEEEEEee--cccccchHHHHHHHHHHHHHHhCC--CCCcceeeEEEEeC---CeE
Q 042772          309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAME--KSVMLNRNKVHRACIEREIMSLLD--HPFLPTLYASFQTS---THI  381 (489)
Q Consensus       309 ~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~--~~~~~~~~~~~~~~~E~~il~~l~--HpnIv~l~~~~~~~---~~~  381 (489)
                      ..++.|+.|.++.||++...  +..+++|...  ....  ......+.+|..+++.+.  +..+++++.++.+.   +..
T Consensus        41 ~~~~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~--~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~  116 (359)
T 3dxp_A           41 LSVEQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKL--LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRA  116 (359)
T ss_dssp             CEEEECCC-CCSCEEEEECS--SCEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSC
T ss_pred             ceEEEcCCcccceEEEEEEC--CceEEEEeCCCCCCCC--CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCe
Confidence            34678899999999998765  4578888765  3221  112346677999999886  45688898888766   458


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-----------------------------------
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-----------------------------------  426 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-----------------------------------  426 (489)
                      |+||||++|..+.+..    ...++......++.+++..|..||+                                   
T Consensus       117 ~~vme~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (359)
T 3dxp_A          117 FYIMEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETE  192 (359)
T ss_dssp             EEEEECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCS
T ss_pred             EEEEEecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCc
Confidence            9999999988774421    1226788888899999999999997                                   


Q ss_pred             -----------------------CCCeecCCCCCCEEEecCCc--EEEEecCCcc
Q 042772          427 -----------------------LGIIYRDLKPENILLQKDGH--VVLTDFDLSF  456 (489)
Q Consensus       427 -----------------------~gIvHrDLKP~NILld~~g~--vKL~DFGlS~  456 (489)
                                             ..++|+|++|.||+++.++.  +.|+||+.+.
T Consensus       193 ~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~  247 (359)
T 3dxp_A          193 SIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELST  247 (359)
T ss_dssp             CCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCE
T ss_pred             CChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccc
Confidence                                   36899999999999997753  6899999986

>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*

Probab=99.06  E-value=1.1e-09  Score=85.20  Aligned_cols=95  Identities=17%  Similarity=0.167  Sum_probs=74.0

Q ss_pred             ccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccccccc
Q 042772           76 IEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNF  155 (489)
Q Consensus        76 ~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (489)
                      ++++++++|+   ++.|+++|++|++++||+.+|++|+++..+  +.                                 
T Consensus         1 ~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~---------------------------------   42 (96)
T 3a0s_A            1 METAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDL--PD---------------------------------   42 (96)
T ss_dssp             CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT---------------------------------
T ss_pred             CCceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc---------------------------------
Confidence            3578999999   999999999999999999999999998765  22                                 


Q ss_pred             ccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCC-eeEEeeeecc
Q 042772          156 TLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGE-LQYFIGVQLD  222 (489)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~-~~~~~~~~~d  222 (489)
                                .......+.+++..+.++..+.    ++|...|+.+++.|+++.+|. +.+++++.+|
T Consensus        43 ----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~D   96 (96)
T 3a0s_A           43 ----------FEEIGSVAESVFENKEPVFLNF----YKFGERYFNIRFSPFRNAKTQLLEGVIITIDD   96 (96)
T ss_dssp             ----------CHHHHHHHHHHHHHTCCEEEEE----EEETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred             ----------hHHHHHHHHHHhccCCeEEEEE----EcCCcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence                      2334455667777777765432    345567999999999998665 6788888766

>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}

Probab=99.03  E-value=2.8e-10  Score=113.99  Aligned_cols=116  Identities=17%  Similarity=0.153  Sum_probs=89.5

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      +..+++.++++|+++|+   +|.|+++|++|++++||+++|++|+++..+...                           
T Consensus        10 ~~~i~~~~~~~i~~~d~---~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---------------------------   59 (349)
T 3a0r_A           10 SESILESLETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---------------------------   59 (349)
T ss_dssp             CCSSGGGSSSEEEEEES---SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---------------------------
T ss_pred             HHHHHhhhcCeEEEECC---CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---------------------------
Confidence            45678999999999999   999999999999999999999999998766321                           


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCe-eEEeeeeccCCccc
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGEL-QYFIGVQLDGSDHV  227 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~-~~~~~~~~d~Te~k  227 (489)
                                        ......+...+..+.++..+  .++.  ...|..+.+.|+++..|.. .+++++.+|||+++
T Consensus        60 ------------------~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~  117 (349)
T 3a0r_A           60 ------------------EEIGSVAESVFENKEPVFLN--FYKF--GERYFNIRFSPFRNAKTQLLEGVIITIDDVTELY  117 (349)
T ss_dssp             ------------------THHHHHHHHHHHHCCCCEEE--CCCB--TTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTT
T ss_pred             ------------------hHHHHHHHHHHhcCCceeec--cccc--CceEEEEEEEEEEcCCCceeeEEEEEEEechHHH
Confidence                              11223345556666665443  2222  3457788999999988875 68999999999999


Q ss_pred             cccccccch
Q 042772          228 EPLRNRLSE  236 (489)
Q Consensus       228 e~e~~~l~~  236 (489)
                      +.+++....
T Consensus       118 ~~e~~~~~~  126 (349)
T 3a0r_A          118 KYEEERKRR  126 (349)
T ss_dssp             TTTTTTTHH
T ss_pred             HHHHHHHHH
Confidence            888776543

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.99  E-value=5.3e-10  Score=115.75  Aligned_cols=105  Identities=13%  Similarity=0.101  Sum_probs=81.1

Q ss_pred             cEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccC
Q 042772           79 NFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLG  158 (489)
Q Consensus        79 ~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (489)
                      -+...|+   ||.++|+|+++..++||+++|++|+++..+..|+                                    
T Consensus       280 fi~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpd------------------------------------  320 (387)
T 4f3l_B          280 YVSRHAI---DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQD------------------------------------  320 (387)
T ss_dssp             EEEEECT---TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHH------------------------------------
T ss_pred             EEEEECC---CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHH------------------------------------
Confidence            3455666   9999999999999999999999999876666554                                    


Q ss_pred             cccccCCCHHHHHHHHHHHHcCCc-EEEEEEeeecCCCeeeEEEeecccccC-CCCeeEEeeeeccCCcccc
Q 042772          159 CCLEISSDQATVSKIRDAVREQRE-ITVQLINYTKSGKKFWNLFHLQPMRDH-KGELQYFIGVQLDGSDHVE  228 (489)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~g~~~~~~~~~~p~~~~-~g~~~~~~~~~~d~Te~ke  228 (489)
                            ......+.+.+.+..++. .+.+....+|||+..|++....+++|. .|++.+++++.+|||++++
T Consensus       321 ------D~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~  386 (387)
T 4f3l_B          321 ------DIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL  386 (387)
T ss_dssp             ------HHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred             ------HHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence                  222233344455555444 557888899999999999999999998 8999999999999999874

>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}

Probab=98.97  E-value=1.3e-09  Score=112.11  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=94.5

Q ss_pred             hHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhh
Q 042772           68 DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWK  147 (489)
Q Consensus        68 ~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (489)
                      .+..+|+.++++|+++|.   +|.|+|+|++ ++++ |+.++++|+++..+..+                          
T Consensus       240 ~l~~IL~~l~dgIivvD~---~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~--------------------------  288 (369)
T 3cax_A          240 ELKAIFEALPVDVTFIDK---DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPP--------------------------  288 (369)
T ss_dssp             HHHHHHHHSSSEEEEECT---TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCG--------------------------
T ss_pred             HHHHHHHhCCCcEEEECC---CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCCh--------------------------
Confidence            467899999999999999   9999999999 9999 99999999998765433                          


Q ss_pred             hcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccc
Q 042772          148 KNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~k  227 (489)
                                       .....+..+.+++..++....+... +++|  .|+.++++|++|.+|++.+++.+.+|||+.+
T Consensus       289 -----------------~~~~~~~~l~~~l~~g~~~~~~~~~-~~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~  348 (369)
T 3cax_A          289 -----------------KSVYVVNKILKAFKEGRKKEATFWL-RLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYK  348 (369)
T ss_dssp             -----------------GGHHHHHHHHHHHHHTSCSCEEEEE-EETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHH
T ss_pred             -----------------hhHHHHHHHHHHHHcCCceEEEEEE-eeCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHH
Confidence                             2233455677778888776665544 3467  4778899999999999999999999999988


Q ss_pred             cccccc
Q 042772          228 EPLRNR  233 (489)
Q Consensus       228 e~e~~~  233 (489)
                      +.++++
T Consensus       349 ~le~~r  354 (369)
T 3cax_A          349 KIEGEK  354 (369)
T ss_dssp             TCCSCC
T ss_pred             HHHHHh
Confidence            877654

>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}

Probab=98.93  E-value=5.5e-10  Score=91.74  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=78.4

Q ss_pred             hhhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCC---ChhhhcCCCccccccccchhhhhhccccccchhHHH
Q 042772           65 QGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEY---TREEILGRNCSFLELTEYTREEILGRNCSTYTFMLY  141 (489)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (489)
                      ....+..+++.+++++++.|.   ++.|+++|++|++++||   +.++++|+++..+..+.                   
T Consensus        13 ~~~~~~~il~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-------------------   70 (118)
T 2w0n_A           13 LFEQRQAMLQSIKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVV-------------------   70 (118)
T ss_dssp             THHHHHHHHHCCCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTH-------------------
T ss_pred             HHHHHHHHHhhccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhccCcccccCch-------------------
Confidence            344567899999999999999   99999999999999998   89999999876554221                   


Q ss_pred             HHHHhhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeec
Q 042772          142 FLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQL  221 (489)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~  221 (489)
                                                .    +.+++..+.......  .+.+|  .|..++..|+.+ +|++.+++++.+
T Consensus        71 --------------------------~----~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~  115 (118)
T 2w0n_A           71 --------------------------D----VSEVLRDGTPRRDEE--ITIKD--RLLLINTVPVRS-NGVIIGAISTFR  115 (118)
T ss_dssp             --------------------------H----HHHHHHTTCCCCCCC--EESSS--CEECCCEECCCC-SSCCCCEEECCC
T ss_pred             --------------------------h----HHHHhccCceeccEE--EEECC--EEEEEeeceeee-CCEEEEEEEEEE
Confidence                                      0    334444444432221  23456  477888999998 889999999999


Q ss_pred             cCC
Q 042772          222 DGS  224 (489)
Q Consensus       222 d~T  224 (489)
                      |||
T Consensus       116 DiT  118 (118)
T 2w0n_A          116 DKT  118 (118)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            997

>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...

Probab=98.87  E-value=1.1e-08  Score=89.01  Aligned_cols=100  Identities=11%  Similarity=0.088  Sum_probs=79.5

Q ss_pred             HHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhc
Q 042772           70 ATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKN  149 (489)
Q Consensus        70 ~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (489)
                      ...++.++.++++.|+   ++.|+++|.++++++||+++|++|++|--...+.                           
T Consensus        20 ~~~ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~---------------------------   69 (125)
T 1nwz_A           20 DGQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPC---------------------------   69 (125)
T ss_dssp             HHHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG---------------------------
T ss_pred             HHHHhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCchhhhccch---------------------------
Confidence            4579999999999999   9999999999999999999999999984322232                           


Q ss_pred             ccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEee-ecCCCeeeEEEeecccccCCCCeeEE
Q 042772          150 YGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINY-TKSGKKFWNLFHLQPMRDHKGELQYF  216 (489)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~g~~~~~~~~~~p~~~~~g~~~~~  216 (489)
                                    .....+..+++++++.+. +..++... +++|+|+++.+++.+  +.+|+..+.
T Consensus        70 --------------~~~~~f~~rf~~~~~~g~-l~~~~~~v~~~~~~p~~v~i~l~~--~~~~~~~~i  120 (125)
T 1nwz_A           70 --------------TDSPEFYGKFKEGVASGN-LNTMFEYTFDYQMTPTKVKVHMKK--ALSGDSYWV  120 (125)
T ss_dssp             --------------GCSTTTHHHHHHHHHHTC-CEEEEEEEECTTSCCEEEEEEEEE--CSSSSEEEE
T ss_pred             --------------hcccHHHHHHHHHHhcCc-eeEEEEEEEcCCCCEEEEEEEEEE--cCCCCEEEE
Confidence                          256667888999999666 77777666 999998887766654  566665543

>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1

Probab=98.82  E-value=2e-08  Score=87.64  Aligned_cols=100  Identities=11%  Similarity=0.036  Sum_probs=78.9

Q ss_pred             HHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhc
Q 042772           70 ATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKN  149 (489)
Q Consensus        70 ~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (489)
                      ...++.++.++++.|+   ++.|+++|.++++++||+++|++|++|--...+.                           
T Consensus        25 ~~~ld~l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~---------------------------   74 (129)
T 1mzu_A           25 TAEFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPC---------------------------   74 (129)
T ss_dssp             CTTGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG---------------------------
T ss_pred             HHHHhccCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCchhhhccch---------------------------
Confidence            3468999999999999   9999999999999999999999999984322232                           


Q ss_pred             ccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEee-ecCCCeeeEEEeecccccCCCCeeEE
Q 042772          150 YGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINY-TKSGKKFWNLFHLQPMRDHKGELQYF  216 (489)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~g~~~~~~~~~~p~~~~~g~~~~~  216 (489)
                                    .....+..+++++++.+. +..++... +++|+|+++.+++.+  +.+|+..+.
T Consensus        75 --------------~~~~~f~grf~~~~~~G~-l~~~~~yv~~~~~~p~~v~i~l~~--~~~~~~~~i  125 (129)
T 1mzu_A           75 --------------TNIPAFSGRFMDGVTSGT-LDARFDFVFDFQMAPVRVQIRMQN--AGVPDRYWI  125 (129)
T ss_dssp             --------------GCSTTTHHHHHHHHHTSC-CEEEEEEEEECSSCEEEEEEEEEE--CSSTTEEEE
T ss_pred             --------------hcccHHHHHHHHHHhcCc-eeEEEEEEEcCCCCEEEEEEEEEE--cCCCCEEEE
Confidence                          256667888999999555 77777766 999998877766654  566765543

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=98.75  E-value=1.8e-08  Score=91.95  Aligned_cols=106  Identities=11%  Similarity=0.103  Sum_probs=77.7

Q ss_pred             hhhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHH
Q 042772           66 GIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      ...+..+++.++++++++|+   +|.|+++|+++++++|++.++++|+++..+..+.                       
T Consensus        79 ~~~l~~il~~~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~-----------------------  132 (190)
T 2jhe_A           79 HLALSALLEALPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF-----------------------  132 (190)
T ss_dssp             HHHHHHHHHHCSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTC-----------------------
T ss_pred             HHHHHHHHHhCCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCC-----------------------
Confidence            34578999999999999999   9999999999999999999999999976554221                       


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCC--cEEEEEEeeecCCCeeeEEEeecccccCCCC----eeEEeee
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQR--EITVQLINYTKSGKKFWNLFHLQPMRDHKGE----LQYFIGV  219 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~----~~~~~~~  219 (489)
                                          .      +.+.+..+.  ....++   +.+|..+  .+.++|+++.+|+    +.+++.+
T Consensus       133 --------------------~------~~~~~~~~~~~~~~~~~---~~~g~~~--~~~~~pi~~~~~~~~~~~~g~v~~  181 (190)
T 2jhe_A          133 --------------------N------FLRWLESEPQDSHNEHV---VINGQNF--LMEITPVYLQDENDQHVLTGAVVM  181 (190)
T ss_dssp             --------------------C------HHHHHHTCCCSCEEEEE---EETTEEE--EEEEEEETTTTEEEEEEEE-HHHH
T ss_pred             --------------------C------HHHHHhcCCCCCcceEE---EECCeEE--EEEEEEEEecCCCCcceEEeEEEE
Confidence                                1      112223232  233333   2277654  5678999886665    7889999


Q ss_pred             eccCCcccc
Q 042772          220 QLDGSDHVE  228 (489)
Q Consensus       220 ~~d~Te~ke  228 (489)
                      .+|+|+.++
T Consensus       182 ~~DiTe~~~  190 (190)
T 2jhe_A          182 LRSTIRMGR  190 (190)
T ss_dssp             HHHHTTTCC
T ss_pred             EeccchhcC
Confidence            999998763

>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A

Probab=98.65  E-value=5.5e-08  Score=98.81  Aligned_cols=106  Identities=8%  Similarity=0.044  Sum_probs=84.2

Q ss_pred             CcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccccccccc
Q 042772           78 KNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTL  157 (489)
Q Consensus        78 ~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (489)
                      +.+...|+   ||.++|+|+++..++||+++|++|+++..+.+|+                                   
T Consensus       155 ~fi~r~~~---dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPd-----------------------------------  196 (339)
T 3rty_A          155 KFAIRHTA---TGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHE-----------------------------------  196 (339)
T ss_dssp             EEEEEEET---TCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGG-----------------------------------
T ss_pred             eEEEEECC---CCeEEEcChhhhcccCCCHHHHcCCcHHHEECHH-----------------------------------
Confidence            34556677   9999999999999999999999999988777775                                   


Q ss_pred             CcccccCCCHHHHHHHHHHHHcCCc-----EEEEEEeeecCCCeeeEEEeecccccCC-CCeeEEeeeeccCCcccc
Q 042772          158 GCCLEISSDQATVSKIRDAVREQRE-----ITVQLINYTKSGKKFWNLFHLQPMRDHK-GELQYFIGVQLDGSDHVE  228 (489)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~k~g~~~~~~~~~~p~~~~~-g~~~~~~~~~~d~Te~ke  228 (489)
                             ......+.++..+..++.     .+.+....+|||+..|++.+.++++|.. |++.++|++.+.++....
T Consensus       197 -------D~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~  266 (339)
T 3rty_A          197 -------DLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ  266 (339)
T ss_dssp             -------GHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred             -------HHHHHHHHHHHHHHcCCcccccccceEEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence                   223334456666666654     3567778899999999999999999975 577788899998887643

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.56  E-value=1.3e-07  Score=93.65  Aligned_cols=133  Identities=18%  Similarity=0.128  Sum_probs=97.0

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCC--cceeeEEEEeCC---eEEEE
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPF--LPTLYASFQTST---HICLI  384 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~Hpn--Iv~l~~~~~~~~---~~~lV  384 (489)
                      ++.++.|.+..||++.     ..+++|.....     .....+..|..+++.+ .+..  ++.++.......   ..|+|
T Consensus        25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~-----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~v   94 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS-----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAG   94 (304)
T ss_dssp             CCEEEECSSEEEEEST-----TSEEEEEESSH-----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEE
T ss_pred             eEecCCCCcceEEEEC-----CEEEEEecCCc-----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEE
Confidence            4568899999999863     45888875422     3346778899999887 3433  455555433332   35889


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC--------------------------------------  426 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~--------------------------------------  426 (489)
                      |++++|.+|.+....    .++......++.|++..+..||+                                      
T Consensus        95 m~~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
T 3sg8_A           95 FTKIKGVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQM  170 (304)
T ss_dssp             EECCCCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             EcccCCeECCccccc----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccH
Confidence            999999888754332    26777778888888888888885                                      


Q ss_pred             --------------------CCCeecCCCCCCEEEec--CCcEEEEecCCccc
Q 042772          427 --------------------LGIIYRDLKPENILLQK--DGHVVLTDFDLSFM  457 (489)
Q Consensus       427 --------------------~gIvHrDLKP~NILld~--~g~vKL~DFGlS~~  457 (489)
                                          ..++|+|++|.||+++.  ++.+.|+||+.+..
T Consensus       171 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~  223 (304)
T 3sg8_A          171 KKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI  223 (304)
T ss_dssp             HHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred             HHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence                                23699999999999998  45678999998853

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.52  E-value=1.3e-06  Score=84.38  Aligned_cols=132  Identities=19%  Similarity=0.213  Sum_probs=95.7

Q ss_pred             cCCCCce-EEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEEEecCCCC
Q 042772          314 LGCGDTG-SVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       314 LG~G~fG-~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lVmEy~~gg  391 (489)
                      +..|..| .||+......+..+++|.-...      ....+..|..+|+.+. +--+++++.++.+.+..|+|||+++|.
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~  105 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGKGS------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGK  105 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEETH------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSE
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECCCC------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCc
Confidence            4445544 6898887777788999976532      3456777999988774 334778888888889999999999998


Q ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC--------------------------------------------
Q 042772          392 ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL--------------------------------------------  427 (489)
Q Consensus       392 sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~--------------------------------------------  427 (489)
                      ++.+......      .....+..+++..|.-||+.                                            
T Consensus       106 ~~~~~~~~~~------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (272)
T 4gkh_A          106 TAFQVLEEYP------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQV  179 (272)
T ss_dssp             EHHHHHHHCG------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHH
T ss_pred             cccccccCCH------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHH
Confidence            8877654421      12233455566666666631                                            


Q ss_pred             --------------CCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          428 --------------GIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       428 --------------gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                                    .++|+|+.|.||+++.++.+-|+||+.+..
T Consensus       180 ~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          180 WKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             HHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                          158999999999999877677999999864

>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}

Probab=98.51  E-value=8e-07  Score=89.43  Aligned_cols=101  Identities=10%  Similarity=0.099  Sum_probs=78.5

Q ss_pred             EEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCcc
Q 042772           81 VITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCC  160 (489)
Q Consensus        81 ~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (489)
                      ...|+   ||.++|+|+++..++||+++|++|+++..+..++                                      
T Consensus       178 trh~~---dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPd--------------------------------------  216 (317)
T 4dj3_A          178 TTHTP---GCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPE--------------------------------------  216 (317)
T ss_dssp             EEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTT--------------------------------------
T ss_pred             EEecC---CCeEEEEChHHhhhcCcChHHHcCCCHHHeECHH--------------------------------------
Confidence            34466   9999999999999999999999999987776664                                      


Q ss_pred             cccCCCHHHHHHHHHHHHcCCc---EEEEEEeeecCCCeeeEEEeecccccC-CCCeeEEeeeeccCCcc
Q 042772          161 LEISSDQATVSKIRDAVREQRE---ITVQLINYTKSGKKFWNLFHLQPMRDH-KGELQYFIGVQLDGSDH  226 (489)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~k~g~~~~~~~~~~p~~~~-~g~~~~~~~~~~d~Te~  226 (489)
                          ......+...+.+..++.   .+.+....+|||+..|++....+++|. .+++.++|+...-++..
T Consensus       217 ----D~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~~p  282 (317)
T 4dj3_A          217 ----DRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILDSSWSSFVNPWSRKVSFIIGRHKVRTSP  282 (317)
T ss_dssp             ----TTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEEEEEEEEECSSSCCEEEEEEEEEECCCC
T ss_pred             ----HHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEeccCC
Confidence                333444556666766554   356778889999999999999999987 46677777877755544

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.46  E-value=1.6e-06  Score=86.22  Aligned_cols=135  Identities=16%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             cccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCC---CcceeeEEEE-eCCeEEEEE
Q 042772          310 PIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP---FLPTLYASFQ-TSTHICLIT  385 (489)
Q Consensus       310 ~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp---nIv~l~~~~~-~~~~~~lVm  385 (489)
                      .++.++.|....||+.     +..+++|.-.     .......+..|..+|+.+.+.   .++.++.+.. ..+..++||
T Consensus        23 ~v~~l~~G~~n~v~~v-----g~~~VlR~~~-----~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~   92 (306)
T 3tdw_A           23 SVESLGEGFRNYAILV-----NGDWVFRFPK-----SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGY   92 (306)
T ss_dssp             CEEEEEECSSEEEEEE-----TTTEEEEEES-----SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEE
T ss_pred             eeeecCCCcceeEEEE-----CCEEEEEecC-----CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEE
Confidence            3456788988999987     4567888742     123456788899999998642   3667776664 345688999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC--------------------------------------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL--------------------------------------  427 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~--------------------------------------  427 (489)
                      ||++|.+|.+..-.    .++......++.++...|..||+.                                      
T Consensus        93 e~i~G~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~  168 (306)
T 3tdw_A           93 RKVQGQILGEDGMA----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESL  168 (306)
T ss_dssp             ECCCSEECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred             eccCCeECchhhhh----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhh
Confidence            99999888763221    134445555555555555555532                                      


Q ss_pred             ----------------------CCeecCCCCCCEEEec---CCcE-EEEecCCcccc
Q 042772          428 ----------------------GIIYRDLKPENILLQK---DGHV-VLTDFDLSFMT  458 (489)
Q Consensus       428 ----------------------gIvHrDLKP~NILld~---~g~v-KL~DFGlS~~~  458 (489)
                                            .++|+|++|.||+++.   ++.+ .|+||+.+...
T Consensus       169 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          169 RDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             HHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             HHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence                                  3599999999999987   4554 89999988643

>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}

Probab=98.29  E-value=2.7e-06  Score=85.26  Aligned_cols=101  Identities=8%  Similarity=0.097  Sum_probs=78.6

Q ss_pred             EEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCcc
Q 042772           81 VITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCC  160 (489)
Q Consensus        81 ~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (489)
                      ...++   ||.++|+|+++..++||+++|++|+++-.+..++                                      
T Consensus       169 trh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpd--------------------------------------  207 (309)
T 3gdi_A          169 TTHTP---NCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPS--------------------------------------  207 (309)
T ss_dssp             EEECT---TCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTT--------------------------------------
T ss_pred             EEecC---CCeEEEECcccccccCcCHHHHcCCCHHHhCCHH--------------------------------------
Confidence            34455   9999999999999999999999999976666664                                      


Q ss_pred             cccCCCHHHH-HHHHHHHHcCCc-EE-EEEEeeecCCCeeeEEEeecccccC-CCCeeEEeeeeccCCccc
Q 042772          161 LEISSDQATV-SKIRDAVREQRE-IT-VQLINYTKSGKKFWNLFHLQPMRDH-KGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       161 ~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~k~g~~~~~~~~~~p~~~~-~g~~~~~~~~~~d~Te~k  227 (489)
                           |...+ +...+.+..++. .+ .+....+|||+..|++....+++|. .+++.++|++..-++...
T Consensus       208 -----D~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~gp~  273 (309)
T 3gdi_A          208 -----DRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPL  273 (309)
T ss_dssp             -----SHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCS
T ss_pred             -----HHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEccCCC
Confidence                 44444 445555665444 54 5778889999999999999999886 577888889888777543

>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}

Probab=98.26  E-value=2.3e-06  Score=86.10  Aligned_cols=102  Identities=9%  Similarity=0.091  Sum_probs=78.7

Q ss_pred             EEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCc
Q 042772           80 FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGC  159 (489)
Q Consensus        80 ~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (489)
                      +...|+   ||.++|+|+++..++||+++|++|+++-.+..++                                     
T Consensus       179 itrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPd-------------------------------------  218 (320)
T 4dj2_A          179 TTRHTP---SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPE-------------------------------------  218 (320)
T ss_dssp             EEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGG-------------------------------------
T ss_pred             EEEecC---CceEEEcCcceeccCCcChHHHcCCcHHHhCCHH-------------------------------------
Confidence            344566   9999999999999999999999999987666664                                     


Q ss_pred             ccccCCCHHHH-HHHHHHHHcC-CcE-EEEEEeeecCCCeeeEEEeecccccC-CCCeeEEeeeeccCCccc
Q 042772          160 CLEISSDQATV-SKIRDAVREQ-REI-TVQLINYTKSGKKFWNLFHLQPMRDH-KGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~~~k~g~~~~~~~~~~p~~~~-~g~~~~~~~~~~d~Te~k  227 (489)
                            |...+ +...+.+..+ ... +.+....+|||+..|++...++++|. .+++.++|+...-++...
T Consensus       219 ------D~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~gp~  284 (320)
T 4dj2_A          219 ------DRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPL  284 (320)
T ss_dssp             ------GHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESSCCS
T ss_pred             ------HHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEccCCC
Confidence                  33333 3444445533 344 35777889999999999999999986 578888899988887654

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.10  E-value=6.9e-06  Score=84.25  Aligned_cols=80  Identities=15%  Similarity=0.164  Sum_probs=50.2

Q ss_pred             cccccCCCCceEEEEEEEcCCCcEEEEEEeecccc-cch---HHHHHHHHHHHHHHhCCC--C-CcceeeEEEEeCCeEE
Q 042772          310 PIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVM-LNR---NKVHRACIEREIMSLLDH--P-FLPTLYASFQTSTHIC  382 (489)
Q Consensus       310 ~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~-~~~---~~~~~~~~E~~il~~l~H--p-nIv~l~~~~~~~~~~~  382 (489)
                      ..+.||.|.++.||++....+++.+++|....... ...   ....++..|.++++.+..  | .+++++.+  +....+
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~  111 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAV  111 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTE
T ss_pred             EEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccE
Confidence            35789999999999997665678899998653211 000   123455678888887632  3 45566643  344568


Q ss_pred             EEEecCCCC
Q 042772          383 LITDFCPGG  391 (489)
Q Consensus       383 lVmEy~~gg  391 (489)
                      +|||++++.
T Consensus       112 lvmE~l~g~  120 (397)
T 2olc_A          112 TVMEDLSHL  120 (397)
T ss_dssp             EEECCCTTS
T ss_pred             EEEEeCCCc
Confidence            999999764

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.98  E-value=8.8e-05  Score=73.45  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=27.6

Q ss_pred             CCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          427 LGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       427 ~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      .+++|+|++|.||+++.++.+.|+||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            679999999999999888899999999885

>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A

Probab=97.17  E-value=1.3e-06  Score=87.46  Aligned_cols=116  Identities=16%  Similarity=0.099  Sum_probs=75.4

Q ss_pred             HHHhccCcEEEECCCCCCCCEEEecHhhHHhc---CCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           72 TLERIEKNFVITDPRIPDNPIIFASDSFLELT---EYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        72 ~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~---gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      .++++.++|+++|.   +|.|+|+|+++++++   |+. ++++|+++..+...... +                      
T Consensus       175 ~~~~~~dGIivvD~---~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~-~----------------------  227 (305)
T 2ykf_A          175 SSPRAGDGFIRLDV---DGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLIS-D----------------------  227 (305)
Confidence            35689999999999   999999999999997   455 79999997644322100 0                      


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHc-CCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCccc
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVRE-QREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHV  227 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~k  227 (489)
                                    ..........+...+.. +..+..++.   ..|  .++.++..|+++ +|++.+++.+.+|||+.+
T Consensus       228 --------------~~~~~~~~~~l~~vl~~~~~~~~~ei~---~~~--~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~  287 (305)
T 2ykf_A          228 --------------PFEAHEVDEHVQDLLAGDGKGMRMEVD---AGG--ATVLLRTLPLVV-AGRNVGAAILIRDVTEVK  287 (305)
Confidence                          00000111112222322 233322221   223  456788899987 588889999999999999


Q ss_pred             ccccccc
Q 042772          228 EPLRNRL  234 (489)
Q Consensus       228 e~e~~~l  234 (489)
                      +.+++..
T Consensus       288 ~lE~eL~  294 (305)
T 2ykf_A          288 RRDRALI  294 (305)
Confidence            8887764

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.90  E-value=4e-05  Score=77.12  Aligned_cols=85  Identities=9%  Similarity=0.008  Sum_probs=54.4

Q ss_pred             ccccc-CCCCceEEEEEEEc--C----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-C--CCcceeeEEEEeC-
Q 042772          310 PIKPL-GCGDTGSVHLVELQ--G----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-H--PFLPTLYASFQTS-  378 (489)
Q Consensus       310 ~~~~L-G~G~fG~Vy~a~~~--~----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-H--pnIv~l~~~~~~~-  378 (489)
                      ..+.| +.|....+|++...  .    ++..+++|...............+..|..+++.+. +  ..+++++.+..+. 
T Consensus        24 ~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~  103 (357)
T 3ats_A           24 VESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGD  103 (357)
T ss_dssp             EEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSST
T ss_pred             EEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCC
Confidence            45677 88999999998754  1    15678889765432000000134556888887773 3  3577788776554 


Q ss_pred             --CeEEEEEecCCCCCHH
Q 042772          379 --THICLITDFCPGGELF  394 (489)
Q Consensus       379 --~~~~lVmEy~~ggsL~  394 (489)
                        +..|+||||++|.++.
T Consensus       104 ~~g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A          104 VLGTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             TTSSCEEEEECCCCBCCC
T ss_pred             ccCCceEEEEecCCCChh
Confidence              3568999999886653

>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A

Probab=97.75  E-value=0.00011  Score=74.46  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CCCEEEecHhhHHhcCCChhhhcCCCcccccccc
Q 042772           89 DNPIIFASDSFLELTEYTREEILGRNCSFLELTE  122 (489)
Q Consensus        89 ~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~  122 (489)
                      +|.|+|||++|..++||+.+|++|++...+..|+
T Consensus        13 ~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~   46 (339)
T 3rty_A           13 DGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLK   46 (339)
T ss_dssp             TCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHH
T ss_pred             CcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHH
Confidence            9999999999999999999999999988777765

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.55  E-value=0.00031  Score=72.62  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=27.9

Q ss_pred             HHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       425 H~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      +...++|+|++|.||+++.++ ++|+||+.+..
T Consensus       230 ~~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             BCCEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CCCeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            356799999999999998776 99999998863

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.50  E-value=0.00086  Score=66.99  Aligned_cols=77  Identities=18%  Similarity=0.155  Sum_probs=59.7

Q ss_pred             ccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC---CCCcceeeEEEEeCCeEEEEE
Q 042772          309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD---HPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       309 ~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~---HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ...+.|+.|....+|+...  .+..+++|.....      ....+..|...|+.|.   ...+++++.+....+..++||
T Consensus        39 ~~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvm  110 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND--EVQTVFVKINERS------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLL  110 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES--SSCEEEEEEEEGG------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEE
T ss_pred             eeeEEeCCccceeeeEEEE--CCCeEEEEeCCcc------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEE
Confidence            3457789999999999874  3677889977532      2456778888888773   357888988888778899999


Q ss_pred             ecCCCCCH
Q 042772          386 DFCPGGEL  393 (489)
Q Consensus       386 Ey~~ggsL  393 (489)
                      ||++|.++
T Consensus       111 e~l~G~~~  118 (312)
T 3jr1_A          111 EALNKSKN  118 (312)
T ss_dssp             ECCCCCCC
T ss_pred             EeccCCCC
Confidence            99998754

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.41  E-value=0.00031  Score=69.09  Aligned_cols=74  Identities=9%  Similarity=-0.055  Sum_probs=44.4

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEEEe
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      +.-++.|+.|....+|++      ..+++|+.......    ......|..+++.+. +.-.++++...  ...-++++|
T Consensus        20 ~~~i~~l~gG~tN~~~~~------~~~vlR~~~~~~~~----~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e   87 (301)
T 3dxq_A           20 YTGPLERLGGLTNLVFRA------GDLCLRIPGKGTEE----YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTR   87 (301)
T ss_dssp             CCSCEEEESCSSEEEEEE------TTEEEEEECC--------CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEE
T ss_pred             ccceeEcCCcccccccee------eeEEEECCCCCccc----eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEe
Confidence            333788988999999998      45788877543111    111234777776663 22225666543  333578999


Q ss_pred             cC-CCCCH
Q 042772          387 FC-PGGEL  393 (489)
Q Consensus       387 y~-~ggsL  393 (489)
                      |+ +|.+|
T Consensus        88 ~i~~g~~l   95 (301)
T 3dxq_A           88 YIAGAQTM   95 (301)
T ss_dssp             CCTTCEEC
T ss_pred             ecCCCccC
Confidence            99 66444

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=97.29  E-value=0.0006  Score=69.31  Aligned_cols=49  Identities=20%  Similarity=0.251  Sum_probs=43.3

Q ss_pred             HHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCcccccccc
Q 042772           71 TTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTE  122 (489)
Q Consensus        71 ~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~  122 (489)
                      .+++.+.+.+++.|+   +|.|+|||++|++++||+++|++|++...+..|+
T Consensus        90 ~~l~a~~~~i~v~~~---~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~  138 (361)
T 4f3l_A           90 LMLEALDGFFLAIMT---DGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEG  138 (361)
T ss_dssp             HHHHHTTEEEEEEET---TSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGG
T ss_pred             HHHHhcCceEEEEcC---CccEEEEechhhhhcCCCHHHhcCCcHHHhcCHH
Confidence            456788788888898   9999999999999999999999999987777665

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.06  E-value=0.0024  Score=62.87  Aligned_cols=143  Identities=20%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-C-CCcceeeEE------EEeC
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-H-PFLPTLYAS------FQTS  378 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-H-pnIv~l~~~------~~~~  378 (489)
                      ....++.|+.|....+|++...+ | .+++|......  ..   ..+..|..+++.+. + -.+++++..      ....
T Consensus        23 ~~~~~~~i~~G~~n~~~~v~~~~-g-~~vlk~~~~~~--~~---~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~   95 (322)
T 2ppq_A           23 SLTSYKGIAEGVENSNFLLHTTK-D-PLILTLYEKRV--EK---NDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELS   95 (322)
T ss_dssp             CEEEEEEECC---EEEEEEEESS-C-CEEEEEECC-----C---CHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEET
T ss_pred             cceEeeccCCCcccceEEEEeCC-c-cEEEEEeCCCC--CH---HHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEEC
Confidence            34456778889889999987643 3 68899886521  11   23445667766653 1 113333321      1234


Q ss_pred             CeEEEEEecCCCCCHHH--------------HHhhC----CCC---CCCHHHHHH---------------HHHHHHHHHH
Q 042772          379 THICLITDFCPGGELFA--------------LLDKQ----PMK---IFREDSARF---------------YAAEVVIGLE  422 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~--------------~L~~~----~~~---~l~e~~~~~---------------i~~qI~~aL~  422 (489)
                      +..+++|+|++|..+..              .++..    ...   .........               +...+...+.
T Consensus        96 g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~  175 (322)
T 2ppq_A           96 GRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEID  175 (322)
T ss_dssp             TEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHH
T ss_pred             CEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            56799999998854310              11110    000   011000000               0011334455


Q ss_pred             HHHH-------CCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          423 YLHC-------LGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       423 yLH~-------~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      +++.       .+++|+|+.|.|||++.++.+.|+||+.+.
T Consensus       176 ~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          176 YLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             HHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            5552       368999999999999877656899999875

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.03  E-value=0.0017  Score=64.61  Aligned_cols=31  Identities=23%  Similarity=0.403  Sum_probs=27.1

Q ss_pred             CCCeecCCCCCCEEEecC----CcEEEEecCCccc
Q 042772          427 LGIIYRDLKPENILLQKD----GHVVLTDFDLSFM  457 (489)
Q Consensus       427 ~gIvHrDLKP~NILld~~----g~vKL~DFGlS~~  457 (489)
                      ..++|+|+.+.||+++.+    +.+.|+||+.+..
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            479999999999999874    6899999998864

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=96.95  E-value=0.0011  Score=68.25  Aligned_cols=48  Identities=17%  Similarity=0.356  Sum_probs=41.2

Q ss_pred             HHHhccCcEEEECCCCCC-CCEEEecHhhHHhcCCChhhhcCCCcccccccc
Q 042772           72 TLERIEKNFVITDPRIPD-NPIIFASDSFLELTEYTREEILGRNCSFLELTE  122 (489)
Q Consensus        72 ~~~~~~~~~~i~d~~~~~-~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~  122 (489)
                      .++.+...+++.++   + |.|+|+|++++.++||+++|++|+++..+..|+
T Consensus        91 ll~~~~gfi~v~~~---~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~  139 (387)
T 4f3l_B           91 ILRAADGFLFVVGC---DRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPK  139 (387)
T ss_dssp             HHHTCCSEEEEEET---TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGG
T ss_pred             HHhcCCCEEEEEec---CCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCC
Confidence            56677777778887   7 999999999999999999999999987666664

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.86  E-value=0.0012  Score=67.67  Aligned_cols=138  Identities=17%  Similarity=0.243  Sum_probs=81.3

Q ss_pred             ccccCCCCceEEEEEEEcC-------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEE
Q 042772          311 IKPLGCGDTGSVHLVELQG-------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~-------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~  382 (489)
                      ++.|..|-...+|++....       .++.+++|+....    ........+|..+++.+. +.-.+++++.+..    .
T Consensus        55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~----~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g  126 (379)
T 3feg_A           55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI----LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----G  126 (379)
T ss_dssp             CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----E
T ss_pred             EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc----cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----c
Confidence            3567678888999988642       3578889975321    112344557888888773 3334677766543    3


Q ss_pred             EEEecCCCCCHHH--------------HH---hhCC---CCCC--CHHHHHHHHHHHHH-------------------HH
Q 042772          383 LITDFCPGGELFA--------------LL---DKQP---MKIF--REDSARFYAAEVVI-------------------GL  421 (489)
Q Consensus       383 lVmEy~~ggsL~~--------------~L---~~~~---~~~l--~e~~~~~i~~qI~~-------------------aL  421 (489)
                      +||||++|.+|..              .|   +...   .+..  -..++..+..++..                   .+
T Consensus       127 ~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~  206 (379)
T 3feg_A          127 RLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEM  206 (379)
T ss_dssp             EEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHH
T ss_pred             cEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHH
Confidence            9999998755421              11   1111   1111  13455555544422                   23


Q ss_pred             HHHH----H----CCCeecCCCCCCEEEecC----CcEEEEecCCcc
Q 042772          422 EYLH----C----LGIIYRDLKPENILLQKD----GHVVLTDFDLSF  456 (489)
Q Consensus       422 ~yLH----~----~gIvHrDLKP~NILld~~----g~vKL~DFGlS~  456 (489)
                      ..|.    .    ..++|+|+.+.||+++.+    +.+.|+||..|.
T Consensus       207 ~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          207 GNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             HHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             HHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            3333    2    258999999999999876    789999999985

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.74  E-value=0.0017  Score=67.58  Aligned_cols=73  Identities=18%  Similarity=0.269  Sum_probs=48.5

Q ss_pred             ccccCCCCceEEEEEEEcC-------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEE
Q 042772          311 IKPLGCGDTGSVHLVELQG-------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~-------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~  382 (489)
                      ++.|+.|....+|++....       .+..+++|+....  ..   ...+..|..+++.+. +...+++++.+..    .
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~---~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g  148 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ET---ESHLVAESVIFTLLSERHLGPKLYGIFSG----G  148 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CC---HHHHHHHHHHHHHHHHTTSSSCEEEEETT----E
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--Cc---HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----C
Confidence            4678889899999998753       2578889987331  11   123446888888774 3334677765532    3


Q ss_pred             EEEecCCCCC
Q 042772          383 LITDFCPGGE  392 (489)
Q Consensus       383 lVmEy~~ggs  392 (489)
                      +||||++|.+
T Consensus       149 ~v~e~l~G~~  158 (429)
T 1nw1_A          149 RLEEYIPSRP  158 (429)
T ss_dssp             EEECCCCEEE
T ss_pred             EEEEEeCCcc
Confidence            8999998633

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.69  E-value=0.0062  Score=60.03  Aligned_cols=76  Identities=11%  Similarity=0.048  Sum_probs=46.0

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC--CCcceeeEE-----EEeCCeEEE
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH--PFLPTLYAS-----FQTSTHICL  383 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H--pnIv~l~~~-----~~~~~~~~l  383 (489)
                      +..++ |....||++... +|+.+++|....... .   ...+..|..+++.+..  -.+++++..     ....+..++
T Consensus        31 ~~~l~-g~~n~~y~v~~~-~g~~~vlK~~~~~~~-~---~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~  104 (328)
T 1zyl_A           31 LTPLN-SYENRVYQFQDE-DRRRFVVKFYRPERW-T---ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFA  104 (328)
T ss_dssp             CEEEC-CSSSEEEEECCT-TCCCEEEEEECTTTS-C---HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEE
T ss_pred             EEeec-CcccceEEEEcC-CCCEEEEEEcCCCCC-C---HHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEE
Confidence            34566 788899987643 366789998864321 1   2345557777766631  123444432     223456789


Q ss_pred             EEecCCCCC
Q 042772          384 ITDFCPGGE  392 (489)
Q Consensus       384 VmEy~~ggs  392 (489)
                      +|+|++|.+
T Consensus       105 l~~~i~G~~  113 (328)
T 1zyl_A          105 VFPSVGGRQ  113 (328)
T ss_dssp             EEECCCCEE
T ss_pred             EEEecCCCC
Confidence            999998744

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.64  E-value=0.011  Score=57.35  Aligned_cols=78  Identities=14%  Similarity=0.060  Sum_probs=54.0

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-C--CCcceeeEEEEeCCeEEE
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-H--PFLPTLYASFQTSTHICL  383 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-H--pnIv~l~~~~~~~~~~~l  383 (489)
                      ....++.+|.|..+.||++... +|+.|.+|........   ....+..|...|+.|. .  --+++++.+  ..  -++
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~-DG~~~~vK~~~~~~~~---~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~~--~~l   87 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELA-DGTPLFVKALPDDAPA---LDGLFRAEALGLDWLGRSFGSPVPQVAGW--DD--RTL   87 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEET-TSCEEEEEECCTTCCC---CTTHHHHHHHHHHHHTCSTTCCSCCEEEE--ET--TEE
T ss_pred             CeEEEEecCCCCCeEEEEEEEC-CCCEEEEEEeCCCCcc---hhhHHHHHHHHHHHHHhhCCCCcceEEec--cC--ceE
Confidence            4566788999999999999875 4889999976543211   1234667888888874 2  235555543  22  378


Q ss_pred             EEecCCCCC
Q 042772          384 ITDFCPGGE  392 (489)
Q Consensus       384 VmEy~~ggs  392 (489)
                      ||||++++.
T Consensus        88 v~e~l~~~~   96 (288)
T 3f7w_A           88 AMEWVDERP   96 (288)
T ss_dssp             EEECCCCCC
T ss_pred             EEEeecccC
Confidence            999997764

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.63  E-value=0.002  Score=65.10  Aligned_cols=74  Identities=19%  Similarity=0.203  Sum_probs=43.3

Q ss_pred             ccccCCCCceEEEEEEEcC--------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeE
Q 042772          311 IKPLGCGDTGSVHLVELQG--------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHI  381 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~--------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~  381 (489)
                      ++.|+.|....+|++....        .+..+++|+......    .......|..+++.+. +..++++++.+  .  -
T Consensus        38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~----~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~  109 (369)
T 3c5i_A           38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD----ELYNTISEFEVYKTMSKYKIAPQLLNTF--N--G  109 (369)
T ss_dssp             EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG----GTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--T
T ss_pred             EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc----ceecHHHHHHHHHHHHhcCCCCceEEec--C--C
Confidence            4567788889999998653        136788887654211    1111245777777774 32255776544  2  2


Q ss_pred             EEEEecCCCCC
Q 042772          382 CLITDFCPGGE  392 (489)
Q Consensus       382 ~lVmEy~~ggs  392 (489)
                      ++||||++|.+
T Consensus       110 ~~v~e~i~G~~  120 (369)
T 3c5i_A          110 GRIEEWLYGDP  120 (369)
T ss_dssp             EEEEECCCSEE
T ss_pred             cEEEEEecCCc
Confidence            68999998754

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.43  E-value=0.0075  Score=63.39  Aligned_cols=75  Identities=17%  Similarity=0.168  Sum_probs=47.7

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCC-cceeeEEEEeCCeEEEEEecCC
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF-LPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      ++.|+.|-...+|++.....+..+++|+.......   .. ....|..+++.|...+ .+++++.+.  +  .+||||++
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~---~i-dR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~  184 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE---II-NREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMD  184 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCS---CS-CHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCC
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhh---hc-CHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeC
Confidence            46788899999999987654578889987442111   01 1146888888886433 467777663  2  35999998


Q ss_pred             CCCH
Q 042772          390 GGEL  393 (489)
Q Consensus       390 ggsL  393 (489)
                      |.+|
T Consensus       185 G~~l  188 (458)
T 2qg7_A          185 GYAL  188 (458)
T ss_dssp             SEEC
T ss_pred             CccC
Confidence            7443

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=96.35  E-value=0.023  Score=56.88  Aligned_cols=30  Identities=17%  Similarity=0.381  Sum_probs=27.0

Q ss_pred             CCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          427 LGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       427 ~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      ..++|+|+.|.||+++.++.+.|+||+.+.
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~  235 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPM  235 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCe
Confidence            468999999999999988889999998875

>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8

Probab=95.12  E-value=0.019  Score=49.79  Aligned_cols=94  Identities=7%  Similarity=0.049  Sum_probs=69.4

Q ss_pred             CCCEEEecHhhHHhcCCCh--hhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCcccccCCC
Q 042772           89 DNPIIFASDSFLELTEYTR--EEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCLEISSD  166 (489)
Q Consensus        89 ~~~i~~~n~~~~~~~gy~~--~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (489)
                      ||.|+|+..+.. ..+|..  +|++|+.|-.+..++                                          ..
T Consensus        16 dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~------------------------------------------D~   52 (132)
T 1oj5_A           16 TGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQ------------------------------------------GR   52 (132)
T ss_dssp             TCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCB------------------------------------------TT
T ss_pred             CCcEEEEecccc-cccccccHHHHHHHHHHHHhCcc------------------------------------------cc
Confidence            999999999987 478888  999999988777664                                          11


Q ss_pred             H--HHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCC-CCeeEEeeeeccCCc
Q 042772          167 Q--ATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHK-GELQYFIGVQLDGSD  225 (489)
Q Consensus       167 ~--~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~-g~~~~~~~~~~d~Te  225 (489)
                      .  ..-+...+.+..+...+..-....|+|+..|++-....++|.. .++.+++++..=+.+
T Consensus        53 ~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~  114 (132)
T 1oj5_A           53 EPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIHIIDRE  114 (132)
T ss_dssp             BCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEEEEEECC----CCCEEEEEEEEECC
T ss_pred             hHHHHHHHHHHHHHcCCccccceEEEecCCcEEEEEEEEEEecCCCCCCCCEEEEEEEEEcC
Confidence            1  3445566677777777777777889999999998888888853 466677776554443

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=94.65  E-value=0.052  Score=56.37  Aligned_cols=75  Identities=21%  Similarity=0.285  Sum_probs=47.0

Q ss_pred             ccccCCCCceEEEEEEEcCC-------CcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEE
Q 042772          311 IKPLGCGDTGSVHLVELQGA-------GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~t-------g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~  382 (489)
                      ++.|..|-...+|++.....       +..+++++......    ..-...+|..+++.+. +.-.+++++.+.    -+
T Consensus        75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~----~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~  146 (424)
T 3mes_A           75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVG----KFYDSKVELDVFRYLSNINIAPNIIADFP----EG  146 (424)
T ss_dssp             EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-----CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TE
T ss_pred             EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcc----hhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CC
Confidence            35666788899999987631       57888988644211    1111235777777763 333566665432    27


Q ss_pred             EEEecCCCCCH
Q 042772          383 LITDFCPGGEL  393 (489)
Q Consensus       383 lVmEy~~ggsL  393 (489)
                      +||+|++|.+|
T Consensus       147 ~I~efI~G~~l  157 (424)
T 3mes_A          147 RIEEFIDGEPL  157 (424)
T ss_dssp             EEEECCCSEEC
T ss_pred             EEEEEeCCccC
Confidence            89999988653

>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9

Probab=93.06  E-value=0.14  Score=51.49  Aligned_cols=40  Identities=13%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             EEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccc
Q 042772           80 FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT  121 (489)
Q Consensus        80 ~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~  121 (489)
                      .++.|+  +++.|+.+|..+.+++|++.++++|++...+-++
T Consensus        45 Ll~~~~--~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~   84 (337)
T 2ool_A           45 LFVVSE--TDLRIASVSANVEDLLRQPPASLLNVPIAHYLTA   84 (337)
T ss_dssp             EEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCH
T ss_pred             EEEEEC--CCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCH
Confidence            344454  3789999999999999999999999997755433

>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}

Probab=92.72  E-value=0.18  Score=50.33  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=34.7

Q ss_pred             ccCcEE-EECCCCCCCCEEEecHhhHHhcCCChhhhcCCCcccccccc
Q 042772           76 IEKNFV-ITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTE  122 (489)
Q Consensus        76 ~~~~~~-i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~  122 (489)
                      ..++|+ +...  .+|.|+|+|+++..++||+.+|++|+++-.+..|+
T Consensus        34 aldGF~~vvs~--~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~   79 (320)
T 4dj2_A           34 NQDTFSVAVSF--LTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQ   79 (320)
T ss_dssp             CSSEEEEEEET--TTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHH
T ss_pred             ccCCEEEEEEC--CCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHH
Confidence            345554 3444  15999999999999999999999999976555553

>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}

Probab=92.46  E-value=0.083  Score=52.47  Aligned_cols=48  Identities=6%  Similarity=0.075  Sum_probs=28.5

Q ss_pred             HHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCcccccccc
Q 042772           73 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTE  122 (489)
Q Consensus        73 ~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~  122 (489)
                      |+.+..-+++.+.  .+|.|+|+|+++..++||+.+|++|++.-.+..|+
T Consensus        21 l~a~dgF~~vvs~--~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~   68 (309)
T 3gdi_A           21 VKNADMFAVAVSL--VSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPH   68 (309)
T ss_dssp             --CTTEEEEEECT--TTCBEEEECTTTTTTC-------CCSBGGGGBCTT
T ss_pred             HHhcCCEEEEEEC--CCceEEEECCHHHHHcCCCHHHHcCCchhhccCHh
Confidence            3344333456666  14999999999999999999999999976555554

>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}

Probab=91.30  E-value=0.12  Score=51.43  Aligned_cols=43  Identities=9%  Similarity=0.031  Sum_probs=34.1

Q ss_pred             CcE-EEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCcccccccc
Q 042772           78 KNF-VITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTE  122 (489)
Q Consensus        78 ~~~-~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~  122 (489)
                      ++| ++.+..  +|.|+|+|++...++||+++|++|++.-.+..|+
T Consensus        36 dgF~~vvs~~--~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~   79 (317)
T 4dj3_A           36 DTFAAVFSFL--SGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQ   79 (317)
T ss_dssp             TEEEEEEETT--TCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGG
T ss_pred             CCEEEEEEcC--CcEEEEECCHHHHHcCCCHHHHcCCchhhhcChh
Confidence            555 455551  5999999999999999999999999976555454

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	489
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-39
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-39
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-38
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-36
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-36
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-36
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	8e-36
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-35
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-35
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	6e-35
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-34
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	5e-34
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	7e-34
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-33
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-33
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	4e-33
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-32
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-31
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-31
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	6e-31
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	8e-31
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-30
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	7e-30
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	7e-30
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-29
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-29
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-29
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-29
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-29
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	8e-29
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-28
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-28
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	9e-28
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-27
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	4e-27
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	5e-27
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	5e-27
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	8e-27
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-26
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-26
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-25
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-25
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-25
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	3e-25
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-25
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-25
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	6e-25
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-24
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-24
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	3e-24
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-23
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-23
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-23
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	5e-23
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	9e-23
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-22
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-22
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-21
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-21
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-21
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	7e-20
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	9e-16
d1n9la_	109	d.110.3.6 (A:) Putative blue light receptor, phot-	5e-15
d1jnua_	104	d.110.3.6 (A:) Photoreceptor phy3 flavin-binding d	1e-14
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-12
d1bywa_	110	d.110.3.6 (A:) Erg potassium channel, N-terminal d	3e-09

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 5e-39
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 2/151 (1%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+  +PLG G  G+V+L   + +  + A+K + K+ +      H+   E EI S L 
Sbjct: 5   LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 64

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  LY  F  +T + LI ++ P G ++  L K  +  F E     Y  E+   L Y 
Sbjct: 65  HPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSYC 122

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H   +I+RD+KPEN+LL   G + + DF  S
Sbjct: 123 HSKRVIHRDIKPENLLLGSAGELKIADFGWS 153

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 5e-39
 Identities = 67/176 (38%), Positives = 89/176 (50%), Gaps = 2/176 (1%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K     FK  K LG G   +V L         YA+K +EK  ++  NKV     ER++MS
Sbjct: 4   KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 63

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            LDHPF   LY +FQ    +     +   GEL   + K  +  F E   RFY AE+V  L
Sbjct: 64  RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSAL 121

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIM 477
           EYLH  GII+RDLKPENILL +D H+ +TDF  + + S + +        G    +
Sbjct: 122 EYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYV 177

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (350), Expect = 3e-38
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 4/183 (2%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            ++ I  LG G  G V+  + +    L A K ++     +  ++    +E +I++  DHP
Sbjct: 13  FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTK---SEEELEDYMVEIDILASCDHP 69

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  L  +F    ++ ++ +FC GG + A++ +   +   E   +    + +  L YLH 
Sbjct: 70  NIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNYLHD 128

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFT 486
             II+RDLK  NIL   DG + L DF +S   +   Q         ++      +     
Sbjct: 129 NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSK 188

Query: 487 YVP 489
             P
Sbjct: 189 DRP 191

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  134 bits (339), Expect = 2e-36
 Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 2/149 (1%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            F  ++ +G G  G+V+        E+ A+K M  S   +  K      E   +  L HP
Sbjct: 16  LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHP 75

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
                   +       L+ ++C G     L   +  K  +E          + GL YLH 
Sbjct: 76  NTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHS 133

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             +I+RD+K  NILL + G V L DF  +
Sbjct: 134 HNMIHRDVKAGNILLSEPGLVKLGDFGSA 162

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  135 bits (340), Expect = 4e-36
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
           ++  ++ LG G  G VH    +  G ++  K +     L++  V     E  IM+ L HP
Sbjct: 30  YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKN---EISIMNQLHHP 86

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            L  L+ +F+    + LI +F  GGELF  +  +  K   E     Y  +   GL+++H 
Sbjct: 87  KLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYK-MSEAEVINYMRQACEGLKHMHE 145

Query: 427 LGIIYRDLKPENILL--QKDGHVVLTDFDLS 455
             I++ D+KPENI+   +K   V + DF L+
Sbjct: 146 HSIVHLDIKPENIMCETKKASSVKIIDFGLA 176

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 4e-36
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            F+ I  LG G+ G V  V  + +G + A K +     +     ++   E +++   + P
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLE--IKPAIRNQIIRELQVLHECNSP 64

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH- 425
           ++   Y +F +   I +  +   GG L  +L K       E      +  V+ GL YL  
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLRE 122

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              I++RD+KP NIL+   G + L DF +S
Sbjct: 123 KHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  134 bits (337), Expect = 8e-36
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L H+   + LG G  G VH V  +  G  +A K +      ++  V +   E + MS+L 
Sbjct: 25  LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRK---EIQTMSVLR 81

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP L  L+ +F+    + +I +F  GGELF  +  +  K   ED A  Y  +V  GL ++
Sbjct: 82  HPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNK-MSEDEAVEYMRQVCKGLCHM 140

Query: 425 HCLGIIYRDLKPENILL--QKDGHVVLTDFDLS 455
           H    ++ DLKPENI+   ++   + L DF L+
Sbjct: 141 HENNYVHLDLKPENIMFTTKRSNELKLIDFGLT 173

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  132 bits (334), Expect = 3e-35
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 5/156 (3%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + ++ F   + +G G  G V+       G++YAMK ++K  +  +     A  ER ++SL
Sbjct: 1   LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL 60

Query: 363 L---DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           +   D PF+  +  +F T   +  I D   GG+L   L +  +  F E   RFYAAE+++
Sbjct: 61  VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGV--FSEADMRFYAAEIIL 118

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           GLE++H   ++YRDLKP NILL + GHV ++D  L+
Sbjct: 119 GLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 154

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 4e-35
 Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 6/181 (3%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            +   + +G G +G+V+       G+  A++ M       +  +     E  +M    +P
Sbjct: 21  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIIN---EILVMRENKNP 77

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +     S+     + ++ ++  GG L  ++ +  M    E        E +  LE+LH 
Sbjct: 78  NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMD---EGQIAAVCRECLQALEFLHS 134

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFT 486
             +I+RD+K +NILL  DG V LTDF      + +           ++          + 
Sbjct: 135 NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYG 194

Query: 487 Y 487
            
Sbjct: 195 P 195

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 6e-35
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 4/171 (2%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            +  ++ LG G  G V L   +   E  A+K ++    ++  +      E  I  +L+H 
Sbjct: 6   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE--NIKKEICINKMLNHE 63

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +   Y   +      L  ++C GGELF  ++        E  A+ +  +++ G+ YLH 
Sbjct: 64  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHG 121

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIM 477
           +GI +RD+KPEN+LL +  ++ ++DF L+ +     +      + G    +
Sbjct: 122 IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYV 172

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 2e-34
 Identities = 75/198 (37%), Positives = 109/198 (55%), Gaps = 7/198 (3%)

Query: 295 KITGSGEKIGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNK-V 350
            +TG  EK+G+ +F+ +K LG G  G V LV        G+LYAMK ++K+ ++ + K  
Sbjct: 13  NLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTT 72

Query: 351 HRACIEREIMSLLDH-PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDS 409
                ER+++  +   PFL TL+ +FQT T + LI D+  GGELF  L ++    F E  
Sbjct: 73  EHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRER--FTEHE 130

Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAH 469
            + Y  E+V+ LE+LH LGIIYRD+K ENILL  +GHVVLTDF LS           +  
Sbjct: 131 VQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDF 190

Query: 470 VNGFYFIMYKWLTGYFTY 487
                ++    + G  + 
Sbjct: 191 CGTIEYMAPDIVRGGDSG 208

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  128 bits (322), Expect = 5e-34
 Identities = 65/151 (43%), Positives = 96/151 (63%), Gaps = 2/151 (1%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  F+ ++ LG G  G VHL+  +  G  YAMK ++K +++   +V     ER ++S++ 
Sbjct: 3   LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVT 62

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HPF+  ++ +FQ +  I +I D+  GGELF+L   +  + F    A+FYAAEV + LEYL
Sbjct: 63  HPFIIRMWGTFQDAQQIFMIMDYIEGGELFSL--LRKSQRFPNPVAKFYAAEVCLALEYL 120

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           H   IIYRDLKPENILL K+GH+ +TDF  +
Sbjct: 121 HSKDIIYRDLKPENILLDKNGHIKITDFGFA 151

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 7e-34
 Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 2/186 (1%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           K+ ++ F  +K LG G  G V LV  +  G  YAMK + K V++ +++V     E  ++ 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
              HPFL  L  +FQT   +C + ++  GGELF  L ++ +  F E+ ARFY AE+V  L
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV--FTEERARFYGAEIVSAL 118

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWL 481
           EYLH   ++YRD+K EN++L KDGH+ +TDF L                   Y       
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLE 178

Query: 482 TGYFTY 487
              +  
Sbjct: 179 DNDYGR 184

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  125 bits (314), Expect = 3e-33
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH----RACIEREI--- 359
           +++P + LG G +  V     +   + YA+K ++ +   + +       R    +E+   
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
             +  HP +  L  +++T+T   L+ D    GELF  L ++      E   R     ++ 
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLE 121

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
            +  LH L I++RDLKPENILL  D ++ LTDF  S
Sbjct: 122 VICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFS 157

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 4e-33
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 3/172 (1%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL-L 363
           +  F   K LG G  G V L E +   + +A+KA++K V+L  + V    +E+ ++SL  
Sbjct: 1   IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW 60

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +HPFL  ++ +FQT  ++  + ++  GG+L   +       F    A FYAAE+++GL++
Sbjct: 61  EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQF 118

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYF 475
           LH  GI+YRDLK +NILL KDGH+ + DF +                   Y 
Sbjct: 119 LHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYI 170

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 4e-33
 Identities = 35/178 (19%), Positives = 76/178 (42%), Gaps = 18/178 (10%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           ++ +  +G G  G    +  +  G++   K ++   M    +      E  ++  L HP 
Sbjct: 6   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM-TEAEKQMLVSEVNLLRELKHPN 64

Query: 368 LPTLYASF--QTSTHICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEY 423
           +   Y     +T+T + ++ ++C GG+L +++ K  +  +   E+       ++ + L+ 
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE 124

Query: 424 LHCLG-----IIYRDLKPENILLQKDGHVVLTDFDLS--------FMTSCKPQVFYHA 468
            H        +++RDLKP N+ L    +V L DF L+        F  +     +Y +
Sbjct: 125 CHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMS 182

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (312), Expect = 2e-32
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 2/166 (1%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
              L  F  IK LG G  G V LV+ + +G  YAMK ++K  ++   ++     E+ I+ 
Sbjct: 37  TAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQ 96

Query: 362 LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            ++ PFL  L  SF+ ++++ ++ ++  GGE+F+ L +     F E  ARFYAA++V+  
Sbjct: 97  AVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTF 154

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
           EYLH L +IYRDLKPEN+L+ + G++ +TDF  +     +      
Sbjct: 155 EYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCG 200

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 2e-31
 Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 5/177 (2%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            +   + LG G+ G VH      + + Y  K ++     ++  V +   E  I+++  H 
Sbjct: 6   KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKK---EISILNIARHR 61

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  L+ SF++   + +I +F  G ++F  ++    +   E     Y  +V   L++LH 
Sbjct: 62  NILHLHESFESMEELVMIFEFISGLDIFERINTSAFE-LNEREIVSYVHQVCEALQFLHS 120

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTG 483
             I + D++PENI+ Q      +   +       KP   +        +   +    
Sbjct: 121 HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQH 177

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 2e-31
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           I        + +G G  G+V+  +  G     A+K +  +      ++     E  ++  
Sbjct: 5   IPDGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAP-TPQQLQAFKNEVGVLRK 60

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
             H  +      + T+  + ++T +C G  L+  L     K F        A +   G++
Sbjct: 61  TRHVNILLFMG-YSTAPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMD 118

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS 459
           YLH   II+RDLK  NI L +D  V + DF L+ + S
Sbjct: 119 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS 155

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (298), Expect = 6e-31
 Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 5/185 (2%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           +          LG G  G V+    +      A+K +++  M    +V     E  +M  
Sbjct: 14  MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM----EVEEFLKEAAVMKE 69

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           + HP L  L           +IT+F   G L   L +   +        + A ++   +E
Sbjct: 70  IKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAME 129

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-FMTSCKPQVFYHAHVNGFYFIMYKWL 481
           YL     I+RDL   N L+ ++  V + DF LS  MT         A     +       
Sbjct: 130 YLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLA 189

Query: 482 TGYFT 486
              F+
Sbjct: 190 YNKFS 194

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 8e-31
 Identities = 34/166 (20%), Positives = 67/166 (40%), Gaps = 8/166 (4%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           + +   K ++ +G G+ G V L + +G     A+K ++               E  +M+ 
Sbjct: 4   LNMKELKLLQTIGKGEFGDVMLGDYRG--NKVAVKCIKNDATAQAFLA-----EASVMTQ 56

Query: 363 LDHPFLPTLYASF-QTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
           L H  L  L     +    + ++T++   G L   L  +   +   D    ++ +V   +
Sbjct: 57  LRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAM 116

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
           EYL     ++RDL   N+L+ +D    ++DF L+   S        
Sbjct: 117 EYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 162

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (295), Expect = 2e-30
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 4/176 (2%)

Query: 301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE-- 358
           ++I +   K  + +G G+ G V    L+  G+     A+ K++     +  R     E  
Sbjct: 21  KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAI-KTLKSGYTEKQRRDFLSEAS 79

Query: 359 IMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           IM   DHP +  L      ST + +IT+F   G L +   +Q    F           + 
Sbjct: 80  IMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSF-LRQNDGQFTVIQLVGMLRGIA 138

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
            G++YL  +  ++RDL   NIL+  +    ++DF LS           +    G  
Sbjct: 139 AGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGK 194

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  115 bits (290), Expect = 7e-30
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            ++  + LG G    VHL          A+K +   +  + +   R   E +  + L+HP
Sbjct: 8   RYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHP 67

Query: 367 FLPTLYASFQTSTH----ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
            +  +Y + +  T       ++ ++  G  L  ++            A    A+    L 
Sbjct: 68  AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHT--EGPMTPKRAIEVIADACQALN 125

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM 457
           + H  GII+RD+KP NI++     V + DF ++  
Sbjct: 126 FSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA 160

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 7e-30
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS-LLDHPFLPT 370
           + LG G  G V  +  +   E +A+K ++      R        E E+       P +  
Sbjct: 18  QVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR--------EVELHWRASQCPHIVR 69

Query: 371 LYASFQTS----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
           +   ++        + ++ +   GGELF+ +  +  + F E  A      +   ++YLH 
Sbjct: 70  IVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS 129

Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDFDLSFMTS 459
           + I +RD+KPEN+L    + +  + LTDF  +  T+
Sbjct: 130 INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT 165

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 1e-29
 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 6/149 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
               +K LG G  G V   + +G     A+K +++  M     +     E ++M  L H 
Sbjct: 5   DLTFLKELGTGQFGVVKYGKWRG-QYDVAIKMIKEGSMSEDEFIE----EAKVMMNLSHE 59

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            L  LY        I +IT++   G L   L +   + F+         +V   +EYL  
Sbjct: 60  KLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLES 118

Query: 427 LGIIYRDLKPENILLQKDGHVVLTDFDLS 455
              ++RDL   N L+   G V ++DF LS
Sbjct: 119 KQFLHRDLAARNCLVNDQGVVKVSDFGLS 147

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (290), Expect = 1e-29
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 7/152 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            +     LG G    V L E +   +L A+K + K  +    K      E  ++  + HP
Sbjct: 10  IYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKAL--EGKEGSMENEIAVLHKIKHP 67

Query: 367 FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC 426
            +  L   +++  H+ LI     GGELF  + ++    + E  A     +V+  ++YLH 
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHD 125

Query: 427 LGIIYRDLKPENILL---QKDGHVVLTDFDLS 455
           LGI++RDLKPEN+L     +D  ++++DF LS
Sbjct: 126 LGIVHRDLKPENLLYYSLDEDSKIMISDFGLS 157

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 3e-29
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 10/155 (6%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
            K    +G G   +V+           A   ++    L +++  R   E E++  L HP 
Sbjct: 11  LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDR-KLTKSERQRFKEEAEMLKGLQHPN 69

Query: 368 LPTLYASFQTST----HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           +   Y S++++      I L+T+    G L   L +   K+ +    R +  +++ GL++
Sbjct: 70  IVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQF 127

Query: 424 LHCLG--IIYRDLKPENILL-QKDGHVVLTDFDLS 455
           LH     II+RDLK +NI +    G V + D  L+
Sbjct: 128 LHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLA 162

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 3e-29
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 7/186 (3%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           +     K ++ LG G  G V +    G     A+K++++  M + +       E  +M  
Sbjct: 10  VPRETLKLVERLGAGQFGEVWMGYYNG-HTKVAVKSLKQGSM-SPDAFLA---EANLMKQ 64

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           L H  L  LYA   T   I +IT++   G L   L          +     AA++  G+ 
Sbjct: 65  LQHQRLVRLYA-VVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMA 123

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-FMTSCKPQVFYHAHVNGFYFIMYKWL 481
           ++     I+RDL+  NIL+       + DF L+  +   +      A     +       
Sbjct: 124 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN 183

Query: 482 TGYFTY 487
            G FT 
Sbjct: 184 YGTFTI 189

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 3e-29
 Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 6/179 (3%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQ---GAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           IG    + ++ LG G  G V   E     G     A+K ++  V+     +     E   
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M  LDH  L  LY    T   + ++T+  P G L   L K     F   +   YA +V  
Sbjct: 65  MHSLDHRNLIRLYGVVLTP-PMKMVTELAPLGSLLDRLRKHQGH-FLLGTLSRYAVQVAE 122

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-FMTSCKPQVFYHAHVNGFYFIM 477
           G+ YL     I+RDL   N+LL     V + DF L   +           H    +   
Sbjct: 123 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWC 181

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 8e-29
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 6/144 (4%)

Query: 314 LGCGDTGSVHLVELQ--GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTL 371
           LGCG+ GSV     +        A+K +++     +        E +IM  LD+P++  L
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRL 74

Query: 372 YASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIY 431
               Q    + L+ +   GG L   L     +     +      +V +G++YL     ++
Sbjct: 75  IGVCQA-EALMLVMEMAGGGPLHKFL-VGKREEIPVSNVAELLHQVSMGMKYLEEKNFVH 132

Query: 432 RDLKPENILLQKDGHVVLTDFDLS 455
           RDL   N+LL    +  ++DF LS
Sbjct: 133 RDLAARNVLLVNRHYAKISDFGLS 156

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-28
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 27/212 (12%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAME-KSVMLNRNKVHRACIEREI-- 359
               + +  K LG G  G V      G  +      +  K +    +   R  +  E+  
Sbjct: 34  FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKM 93

Query: 360 -MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQ------------------ 400
              L  H  +  L  +   S  I LI ++C  G+L   L  +                  
Sbjct: 94  MTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLE 153

Query: 401 ---PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-- 455
               + +   +    +A +V  G+E+L     ++RDL   N+L+     V + DF L+  
Sbjct: 154 EEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARD 213

Query: 456 FMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
            M+     V  +A +   +        G +T 
Sbjct: 214 IMSDSNYVVRGNARLPVKWMAPESLFEGIYTI 245

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 4e-28
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 6/181 (3%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           I       ++ +G G  G VHL       +  A+K + +  M   + +     E E+M  
Sbjct: 2   IDPSELTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIREGAMSEEDFIE----EAEVMMK 56

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           L HP L  LY        ICL+ +F   G L   L  Q   +F  ++      +V  G+ 
Sbjct: 57  LSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGMA 115

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLT 482
           YL    +I+RDL   N L+ ++  + ++DF ++                   +   +  +
Sbjct: 116 YLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFS 175

Query: 483 G 483
            
Sbjct: 176 F 176

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 9e-28
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 5/179 (2%)

Query: 311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDHPFL 368
           +  LG G   +V+    +   ++ A+K ++                RE  ++  L HP +
Sbjct: 3   LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI 62

Query: 369 PTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG 428
             L  +F   ++I L+ DF        + D     +      + Y    + GLEYLH   
Sbjct: 63  IGLLDAFGHKSNISLVFDFMETDLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQHW 120

Query: 429 IIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
           I++RDLKP N+LL ++G + L DF L+  +   P   Y   V   ++   + L G   Y
Sbjct: 121 ILHRDLKPNNLLLDENGVLKLADFGLA-KSFGSPNRAYTHQVVTRWYRAPELLFGARMY 178

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 1e-27
 Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 6/181 (3%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL 362
           I     +    LG G  G V +    G     A+K ++   M     +     E ++M  
Sbjct: 14  IPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQ----EAQVMKK 68

Query: 363 LDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
           L H  L  LYA   +   I ++T++   G L   L  +  K  R       AA++  G+ 
Sbjct: 69  LRHEKLVQLYA-VVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMA 127

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLT 482
           Y+  +  ++RDL+  NIL+ ++    + DF L+ +                 +   +   
Sbjct: 128 YVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAAL 187

Query: 483 G 483
            
Sbjct: 188 Y 188

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 4e-27
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 30/211 (14%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIER 357
              +     K LG G  G V      G     A    A+K ++ S     +   R  +  
Sbjct: 20  FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPS----AHLTEREALMS 75

Query: 358 EI---MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI---------- 404
           E+     L +H  +  L  +        +IT++C  G+L   L ++              
Sbjct: 76  ELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIM 135

Query: 405 ------FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
                    +    ++ +V  G+ +L     I+RDL   NILL       + DF L+   
Sbjct: 136 EDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDI 195

Query: 459 SCKPQVFYHAHVNG--FYFIMYKWLTGYFTY 487
                     +      +          +T+
Sbjct: 196 KNDSNYVVKGNARLPVKWMAPESIFNCVYTF 226

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 5e-27
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 17/188 (9%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF 367
           +   K +G G  G V+  +L  +GEL A+K + +              E +IM  LDH  
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-------ELQIMRKLDHCN 74

Query: 368 LPTLYASFQTS------THICLITDFCPGGELFALLD-KQPMKIFREDSARFYAAEVVIG 420
           +  L   F +S       ++ L+ D+ P           +  +       + Y  ++   
Sbjct: 75  IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRS 134

Query: 421 LEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYK 479
           L Y+H  GI +RD+KP+N+LL  D   + L DF  +            +++   Y+   +
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA--KQLVRGEPNVSYICSRYYRAPE 192

Query: 480 WLTGYFTY 487
            + G   Y
Sbjct: 193 LIFGATDY 200

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 5e-27
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML-NRNKVHRACIERE--IMSLL 363
           ++   + LG G    V     +  G  YA K ++K     +R  V R  IERE  I+  +
Sbjct: 11  YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI 70

Query: 364 DHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
            HP + TL+  ++  T + LI +   GGELF  L ++  +   E+ A  +  +++ G+ Y
Sbjct: 71  QHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYY 128

Query: 424 LHCLGIIYRDLKPENILLQKDG----HVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           LH L I + DLKPENI+L         + + DF L+       +         F 
Sbjct: 129 LHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFV 183

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 8e-27
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 15/174 (8%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
            +  +  K    +G G+ G V    ++  G              +++       E E++ 
Sbjct: 6   VLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLC 65

Query: 362 -LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPM--------------KIFR 406
            L  HP +  L  + +   ++ L  ++ P G L   L K  +                  
Sbjct: 66  KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 125

Query: 407 EDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC 460
                 +AA+V  G++YL     I+RDL   NIL+ ++    + DF LS     
Sbjct: 126 SQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV 179

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-26
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 6/146 (4%)

Query: 312 KPLGCGDTGSVHLVELQ--GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLP 369
           K LG G+ G+V     Q     +  A+K ++     +         E  +M  LD+P++ 
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIV 71

Query: 370 TLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGI 429
            +    +      L+ +    G L   L +   +  ++ +      +V +G++YL     
Sbjct: 72  RMIGICEAE-SWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNF 128

Query: 430 IYRDLKPENILLQKDGHVVLTDFDLS 455
           ++RDL   N+LL    +  ++DF LS
Sbjct: 129 VHRDLAARNVLLVTQHYAKISDFGLS 154

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 4e-26
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 4/172 (2%)

Query: 308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIERE--IMSLLDH 365
           FK IK LG G  G+V+       GE   +    K +    +      I  E  +M+ +D+
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
           P +  L     TST   LIT   P G L   + +             +  ++  G+ YL 
Sbjct: 71  PHVCRLLGICLTSTV-QLITQLMPFGCLLDYVREHKDN-IGSQYLLNWCVQIAKGMNYLE 128

Query: 426 CLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIM 477
              +++RDL   N+L++   HV +TDF L+ +   + + ++          M
Sbjct: 129 DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 180

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 2e-25
 Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 14/192 (7%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            ++ +  +G G  G V     +  G+  A+K +             A  E +I+ LL H 
Sbjct: 11  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLME-NEKEGFPITALREIKILQLLKHE 69

Query: 367 FLPTLYASFQTST--------HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
            +  L    +T           I L+ DFC        L    +  F     +     ++
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAG--LLSNVLVKFTLSEIKRVMQMLL 127

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS---FMTSCKPQVFYHAHVNGFYF 475
            GL Y+H   I++RD+K  N+L+ +DG + L DF L+    +        Y   V   ++
Sbjct: 128 NGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWY 187

Query: 476 IMYKWLTGYFTY 487
              + L G   Y
Sbjct: 188 RPPELLLGERDY 199

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 29/209 (13%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIM 360
           ++ + ++ +G G  G V      G        + A+K +++    + +       E  +M
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALM 70

Query: 361 SLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKI---------------- 404
           +  D+P +  L         +CL+ ++   G+L   L                       
Sbjct: 71  AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVS 130

Query: 405 ------FREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT 458
                          A +V  G+ YL     ++RDL   N L+ ++  V + DF LS   
Sbjct: 131 SPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNI 190

Query: 459 SCKPQVFYHAHVNGFYFIMYKWLTGYFTY 487
                     +       M      Y  Y
Sbjct: 191 YSADYYKADGNDAIPIRWMPPESIFYNRY 219

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-25
 Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 2/170 (1%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           + +F+ ++ +G G  G V+    +  GE+ A+K +             A  E  ++  L+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 59

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           HP +  L     T   + L+ +F     L   +D   +        + Y  +++ GL + 
Sbjct: 60  HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFY 474
           H   +++RDLKP+N+L+  +G + L DF L+       + + H  V  +Y
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 168

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  104 bits (259), Expect = 3e-25
 Identities = 34/185 (18%), Positives = 67/185 (36%), Gaps = 15/185 (8%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS-LLDH 365
            ++ ++ LG G    V         E   +K ++        K  +   E +I+  L   
Sbjct: 36  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV------KKKKIKREIKILENLRGG 89

Query: 366 PFLPTLYASFQTSTH--ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEY 423
           P + TL    +        L+ +     +   L      +   +   RFY  E++  L+Y
Sbjct: 90  PNIITLADIVKDPVSRTPALVFEHVNNTDFKQL-----YQTLTDYDIRFYMYEILKALDY 144

Query: 424 LHCLGIIYRDLKPENILL-QKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLT 482
            H +GI++RD+KP N+++  +   + L D+ L+       +         F         
Sbjct: 145 CHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDY 204

Query: 483 GYFTY 487
             + Y
Sbjct: 205 QMYDY 209

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 3e-25
 Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 4/183 (2%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           +  ++ ++ +G G  G+V   + +   E+ A+K +      +      A  E  ++  L 
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELK 59

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           H  +  L+    +   + L+ +FC                   +  + +  +++ GL + 
Sbjct: 60  HKNIVRLHDVLHSDKKLTLVFEFCDQDLKK--YFDSCNGDLDPEIVKSFLFQLLKGLGFC 117

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGY 484
           H   +++RDLKP+N+L+ ++G + L +F L+      P   Y A V   ++     L G 
Sbjct: 118 HSRNVLHRDLKPQNLLINRNGELKLANFGLARAFG-IPVRCYSAEVVTLWYRPPDVLFGA 176

Query: 485 FTY 487
             Y
Sbjct: 177 KLY 179

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  102 bits (255), Expect = 4e-25
 Identities = 37/183 (20%), Positives = 75/183 (40%), Gaps = 5/183 (2%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           +  +  ++ +G G  G V+  +    GE +A+K +      +         E  I+  L 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNY-GETFALKKIRLE-KEDEGIPSTTIREISILKELK 58

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
           H  +  LY    T   + L+ +         L   +        +A+ +  +++ G+ Y 
Sbjct: 59  HSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYC 116

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYKWLTGY 484
           H   +++RDLKP+N+L+ ++G + + DF L+      P   Y   +   ++     L G 
Sbjct: 117 HDRRVLHRDLKPQNLLINREGELKIADFGLARAFG-IPVRKYTHEIVTLWYRAPDVLMGS 175

Query: 485 FTY 487
             Y
Sbjct: 176 KKY 178

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 6e-25
 Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 10/176 (5%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            +  +  +G G  G V            A+K +      ++    R   E +I+    H 
Sbjct: 9   RYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHE 66

Query: 367 FLPTLYASFQTSTHI----CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
            +  +    +  T        +     G +L+ LL  Q +     D   ++  +++ GL+
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLS---NDHICYFLYQILRGLK 123

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-FMTSCKPQVFYHAHVNGFYFIM 477
           Y+H   +++RDLKP N+LL     + + DF L+           +        +  
Sbjct: 124 YIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 179

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 1e-24
 Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH 365
             ++ ++P+G G  G+V        G   A+K + +    +     RA  E  ++  + H
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRH 76

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMK--IFREDSARFYAAEVVIGLEY 423
             +  L   F     +   TDF            + MK     ED  +F   +++ GL Y
Sbjct: 77  ENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRY 136

Query: 424 LHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-----FMTSCKPQVFYHAH--------- 469
           +H  GII+RDLKP N+ + +D  + + DF L+      MT      +Y A          
Sbjct: 137 IHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRY 196

Query: 470 -----VNGFYFIMYKWLTGYFTY 487
                +     IM + +TG   +
Sbjct: 197 TQTVDIWSVGCIMAEMITGKTLF 219

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-24
 Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH---RACIEREIMSLL 363
            ++    LG G  GSV+           A+K +EK  + +  ++    R  +E  ++  +
Sbjct: 5   QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 64

Query: 364 D--HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
                 +  L   F+      LI +     +       +     +E+ AR +  +V+  +
Sbjct: 65  SSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER-GALQEELARSFFWQVLEAV 123

Query: 422 EYLHCLGIIYRDLKPENILL-QKDGHVVLTDFDLSFMTS 459
            + H  G+++RD+K ENIL+    G + L DF    +  
Sbjct: 124 RHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK 162

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.8 bits (248), Expect = 3e-24
 Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 7/184 (3%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           I     +  + +G G  G VH       +      A+K  +     + +   +   E   
Sbjct: 4   IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT--SDSVREKFLQEALT 61

Query: 360 MSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVI 419
           M   DHP +  L     T   + +I + C  GEL + L  +        S   YA ++  
Sbjct: 62  MRQFDHPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKYS-LDLASLILYAYQLST 119

Query: 420 GLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMYK 479
            L YL     ++RD+   N+L+  +  V L DF LS                   ++  +
Sbjct: 120 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPE 179

Query: 480 WLTG 483
            +  
Sbjct: 180 SINF 183

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.4 bits (244), Expect = 2e-23
 Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 13/185 (7%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS 361
           ++G + ++  + +G G  G ++L     AGE  A+K     +   + K  +  IE +I  
Sbjct: 4   RVG-NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIK-----LECVKTKHPQLHIESKIYK 57

Query: 362 LLDHP-FLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIG 420
           ++     +PT+        +  ++ +          L     + F   +    A +++  
Sbjct: 58  MMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLED--LFNFCSRKFSLKTVLLLADQMISR 115

Query: 421 LEYLHCLGIIYRDLKPENILLQKDGH---VVLTDFDLS-FMTSCKPQVFYHAHVNGFYFI 476
           +EY+H    I+RD+KP+N L+        V + DF L+      +         N     
Sbjct: 116 IEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTG 175

Query: 477 MYKWL 481
             ++ 
Sbjct: 176 TARYA 180

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (244), Expect = 2e-23
 Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 25/171 (14%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL--LDHPFLP 369
           + +G G  G V   + +G  E  A+K      + +  +      E EI     L H  + 
Sbjct: 9   ESIGKGRFGEVWRGKWRG--EEVAVK------IFSSREERSWFREAEIYQTVMLRHENIL 60

Query: 370 TLYASFQ----TSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
              A+      T T + L++D+   G LF  L++  +     +     A     GL +LH
Sbjct: 61  GFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVT---VEGMIKLALSTASGLAHLH 117

Query: 426 C--------LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHA 468
                      I +RDLK +NIL++K+G   + D  L+            A
Sbjct: 118 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIA 168

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 3e-23
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 23/207 (11%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIER 357
                 K  KPLG G  G V   +  G          A+K +++    + ++   + ++ 
Sbjct: 10  FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI 69

Query: 358 EIMSLLDHPFLPTL-YASFQTSTHICLITDFCPGGELFALLDKQPMK------------- 403
            ++ +  H  +  L  A  +    + +I +FC  G L   L  +  +             
Sbjct: 70  -LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYK 128

Query: 404 -IFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKP 462
                +    Y+ +V  G+E+L     I+RDL   NILL +   V + DF L+      P
Sbjct: 129 DFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 188

Query: 463 QVFYHAHVNG--FYFIMYKWLTGYFTY 487
                        +          +T 
Sbjct: 189 DYVRKGDARLPLKWMAPETIFDRVYTI 215

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 5e-23
 Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 13/187 (6%)

Query: 306 HHFKPIKPLGCGDTGSVHLV-ELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL- 363
             ++ +  +G G  G V    +L+  G   A+K +                E  ++  L 
Sbjct: 7   QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTG-EEGMPLSTIREVAVLRHLE 65

Query: 364 --DHPFLPTLYASFQTS-----THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAE 416
             +HP +  L+     S     T + L+ +          LDK P      ++ +    +
Sbjct: 66  TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTT-YLDKVPEPGVPTETIKDMMFQ 124

Query: 417 VVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFI 476
           ++ GL++LH   +++RDLKP+NIL+   G + L DF L+       Q+   + V   ++ 
Sbjct: 125 LLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA--RIYSFQMALTSVVVTLWYR 182

Query: 477 MYKWLTG 483
             + L  
Sbjct: 183 APEVLLQ 189

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 9e-23
 Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 14/186 (7%)

Query: 305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD 364
           L  ++ +KP+G G  G V            A+K + +    N+    RA  E  +M  ++
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVN 74

Query: 365 HPFLPTLYASFQTS------THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVV 418
           H  + +L   F           + L+ +         +  +        +   +   +++
Sbjct: 75  HKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELD-----HERMSYLLYQML 129

Query: 419 IGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMY 478
            G+++LH  GII+RDLKP NI+++ D  + + DF L+   +         +V   Y+   
Sbjct: 130 CGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA--RTAGTSFMMTPYVVTRYYRAP 187

Query: 479 KWLTGY 484
           + + G 
Sbjct: 188 EVILGM 193

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.4 bits (231), Expect = 6e-22
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGE----LYAMKAMEKSVMLNRNKVHRACIER 357
           +I        K +G G+ G V+   L+ +        A+K ++        +      E 
Sbjct: 3   EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG--YTEKQRVDFLGEA 60

Query: 358 EIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEV 417
            IM    H  +  L         + +IT++   G       ++    F           +
Sbjct: 61  GIMGQFSHHNIIRLEGVISKYKPMMIITEYMENG-ALDKFLREKDGEFSVLQLVGMLRGI 119

Query: 418 VIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
             G++YL  +  ++RDL   NIL+  +    ++DF LS
Sbjct: 120 AAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLS 157

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.8 bits (232), Expect = 6e-22
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 25/204 (12%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQG-------AGELYAMKAMEKSVMLNRNKVHRACI 355
           +        KPLG G  G V L E  G            A+K ++         +     
Sbjct: 10  LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLIS 67

Query: 356 EREIMS-LLDHPFLPTLYASFQTSTHICLITDFCPGGELFALL--------------DKQ 400
           E E+M  +  H  +  L  +      + +I ++   G L   L                 
Sbjct: 68  EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHN 127

Query: 401 PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS-FMTS 459
           P +          A +V  G+EYL     I+RDL   N+L+ +D  + + DF L+  +  
Sbjct: 128 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 187

Query: 460 CKPQVFYHAHVNGFYFIMYKWLTG 483
                          ++  + L  
Sbjct: 188 IDYYKKTTNGRLPVKWMAPEALFD 211

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.4 bits (231), Expect = 1e-21
 Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 15/188 (7%)

Query: 303 IGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIER 357
           +        + LG G  G V+    +G          A+K + ++  +          E 
Sbjct: 17  VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLN--EA 74

Query: 358 EIMSLLDHPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFR--------EDS 409
            +M   +   +  L           +I +    G+L + L      +             
Sbjct: 75  SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSK 134

Query: 410 ARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAH 469
               A E+  G+ YL+    ++RDL   N ++ +D  V + DF ++              
Sbjct: 135 MIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 194

Query: 470 VNGFYFIM 477
                  M
Sbjct: 195 GLLPVRWM 202

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 92.2 bits (228), Expect = 2e-21
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 13/155 (8%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH- 365
           H+K  + +G G  G +         +  A+K   +     R+   +   E     LL   
Sbjct: 6   HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPR-----RSDAPQLRDEYRTYKLLAGC 60

Query: 366 PFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLH 425
             +P +Y   Q   H  L+ D    G     L     + F   +    A +++  ++ +H
Sbjct: 61  TGIPNVYYFGQEGLHNVLVIDLL--GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH 118

Query: 426 CLGIIYRDLKPENILL-----QKDGHVVLTDFDLS 455
              ++YRD+KP+N L+     +    + + DF + 
Sbjct: 119 EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV 153

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 4e-21
 Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 9/166 (5%)

Query: 307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHP 366
            ++ + P+G G  GSV        G   A+K + +    +     R   E  ++  + H 
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHE 77

Query: 367 FLPTLYASFQTSTHIC-----LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGL 421
            +  L   F  +  +       +     G +L  ++  Q      +D  +F   +++ GL
Sbjct: 78  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIYQILRGL 134

Query: 422 EYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYH 467
           +Y+H   II+RDLKP N+ + +D  + + DF L+  T  +   +  
Sbjct: 135 KYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVA 180

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 7e-20
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 9/176 (5%)

Query: 307 HFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL 363
           HF  +  +G G  G V+   L    G     A+K++ +    +  +V +   E  IM   
Sbjct: 30  HFNEV--IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDF 85

Query: 364 DHPFLPTLY-ASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLE 422
            HP + +L     ++     ++  +   G+L   +  +            +  +V  G++
Sbjct: 86  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN-PTVKDLIGFGLQVAKGMK 144

Query: 423 YLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQVFYHAHVNGFYFIMY 478
           +L     ++RDL   N +L +   V + DF L+     K     H        + +
Sbjct: 145 FLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 200

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.6 bits (187), Expect = 9e-16
 Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 12/190 (6%)

Query: 300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI 359
           GE      +  ++ LG G   +V L +        AMK +    +          + + +
Sbjct: 7   GEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRV 66

Query: 360 -------MSLLDHPFLPTLYASFQT---STHICLITDFCPGGELFALLDKQPMKIFREDS 409
                     +    +  L   F     +    ++     G  L AL+ K   +      
Sbjct: 67  NDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIY 126

Query: 410 ARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHV-VLTDFDLSFMTSCKPQVFYH 467
            +  + ++++GL+Y+H   GII+ D+KPEN+L++       L    ++ + +      ++
Sbjct: 127 VKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY 186

Query: 468 AHVNGFYFIM 477
            +        
Sbjct: 187 TNSIQTREYR 196

>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 109

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Putative blue light receptor, phot-lov1 domain
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 68.7 bits (167), Expect = 5e-15
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 42/147 (28%)

Query: 76  IEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCST 135
           +   FV+ D  +PD P+++AS+ F  +T Y  +E+LG NC F                  
Sbjct: 2   LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRF------------------ 43

Query: 136 YTFMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGK 195
                                        +D   V KIRDA+++    +V+L+NY K G 
Sbjct: 44  ------------------------LQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGT 79

Query: 196 KFWNLFHLQPMRDHKGELQYFIGVQLD 222
            FWNL  + P++   G +  F+GVQ+D
Sbjct: 80  PFWNLLTVTPIKTPDGRVSKFVGVQVD 106

>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Photoreceptor phy3 flavin-binding domain, lov2
species: Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 66/145 (45%), Positives = 82/145 (56%), Gaps = 42/145 (28%)

Query: 78  KNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYT 137
           K+FVITDPR+PDNPIIFASD FLELTEYTREE+LG NC FL+     R+ +     +   
Sbjct: 1   KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAV-- 58

Query: 138 FMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKF 197
                                                   +EQR++TVQ++NYTK G+ F
Sbjct: 59  ----------------------------------------KEQRDVTVQVLNYTKGGRAF 78

Query: 198 WNLFHLQPMRDHKGELQYFIGVQLD 222
           WNLFHLQ MRD  G++QYFIGVQ +
Sbjct: 79  WNLFHLQVMRDENGDVQYFIGVQQE 103

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 63.6 bits (154), Expect = 2e-12
 Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 14/151 (9%)

Query: 312 KPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVH-------RACIEREIMSLLD 364
           K +G G   +V     +       +K  +      +              +     +  +
Sbjct: 6   KLMGEGKESAVFNCYSEK-FGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNE 64

Query: 365 HPFLPTLYASFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYL 424
              L  L         +  +  +     L  L+D + +   R ++       ++  +   
Sbjct: 65  FRALQKLQ-----GLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKF 119

Query: 425 HCLGIIYRDLKPENILLQKDGHVVLTDFDLS 455
           +  GI++ DL   N+L+  +  + + DF  S
Sbjct: 120 YHRGIVHGDLSQYNVLVS-EEGIWIIDFPQS 149

>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Erg potassium channel, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 3e-09
 Identities = 16/107 (14%), Positives = 38/107 (35%)

Query: 78  KNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYT 137
           + F+I + R+ +  +I+ +D F EL  Y+R E++ R C+   L     +       +   
Sbjct: 2   RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQAL 61

Query: 138 FMLYFLALWKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREIT 184
                  +    Y        C +++   +     +   +     + 
Sbjct: 62  LGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVM 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	489
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.98
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.98
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.98
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.98
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.98
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.97
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.97
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.97
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.97
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.97
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.97
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.97
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.97
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.97
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.97
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.97
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.93
d1n9la_	109	Putative blue light receptor, phot-lov1 domain {Gr	99.91
d1jnua_	104	Photoreceptor phy3 flavin-binding domain, lov2 {Ma	99.87
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.87
d1bywa_	110	Erg potassium channel, N-terminal domain {Human (H	99.86
d1v9ya_	113	Direct oxygen sensor protein, DOS {Escherichia col	99.59
d1ew0a_	130	Histidine kinase FixL heme domain {Rhizobium melil	99.59
d1xj3a1	106	Histidine kinase FixL heme domain {Bradyrhizobium	99.58
d1p97a_	114	Hypoxia-inducible factor Hif2a, C-terminal domain	99.56
d1nwza_	125	Photoactive yellow protein, PYP {Ectothiorhodospir	99.3
d1mzua_	110	PYP domain of sensor histidine kinase Ppr {Rhodosp	99.27
d1ll8a_	114	N-terminal PAS domain of Pas kinase {Human (Homo s	99.23
d1oj5a_	109	PAS domain of steroid receptor coactivator 1A, NCo	98.54
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.41
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.8
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.71
d2oola2	114	Sensor protein PhyB2 {Rhodopseudomonas palustris [	96.84
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.45
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.08
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.76
d2o9ca2	127	Bacteriophytochrome BphP {Deinococcus radiodurans	92.79
d2veaa3	127	Phytochrome-like protein Cph1 {Synechocystis sp. p	92.73
d3c2wa3	113	Bacteriophytochrome BphP {Pseudomonas aeruginosa [	83.19

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-38  Score=311.82  Aligned_cols=183  Identities=30%  Similarity=0.454  Sum_probs=163.8

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      .+++|++.+.||+|+||+||+|.++.+++.||+|++.+...........+.+|+.+++.++||||+++++++.+++.+|+
T Consensus         4 ~l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i   83 (263)
T d2j4za1           4 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   83 (263)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             chhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEE
Confidence            46789999999999999999999999999999999987655555566788899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC--
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK--  461 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~--  461 (489)
                      |||||++|+|.+++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|......  
T Consensus        84 vmEy~~~g~L~~~l~~~--~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~  161 (263)
T d2j4za1          84 ILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR  161 (263)
T ss_dssp             EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCC
T ss_pred             EEeecCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCCCcc
Confidence            99999999999999875  34899999999999999999999999999999999999999999999999999644311  


Q ss_pred             -----------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          462 -----------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -----------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 |      .+...+|+|++|++++++++|..||.
T Consensus       162 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~  205 (263)
T d2j4za1         162 TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE  205 (263)
T ss_dssp             EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCC
Confidence                       1      12235599999999999999999995

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=311.57  Aligned_cols=180  Identities=24%  Similarity=0.399  Sum_probs=156.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||+||+|.++.+|+.||+|++++...  ....+.+.+|+.++++++||||+++++++.+++.+|+|
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~iv   81 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   81 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhc--chHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEE
Confidence            3579999999999999999999999999999999976532  23345688999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-----  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-----  459 (489)
                      ||||++|+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||+++++.+||+|||+|+...     
T Consensus        82 mEy~~gg~L~~~l~~~--~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~  159 (271)
T d1nvra_          82 LEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE  159 (271)
T ss_dssp             EECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred             EeccCCCcHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCcc
Confidence            9999999999999765  459999999999999999999999999999999999999999999999999996421     


Q ss_pred             ------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  .+|+.       ...+|+|++|.++++|++|..||.
T Consensus       160 ~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~  207 (271)
T d1nvra_         160 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD  207 (271)
T ss_dssp             CCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCS
T ss_pred             ccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCC
Confidence                        12221       123499999999999999999995

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-38  Score=317.67  Aligned_cols=184  Identities=37%  Similarity=0.690  Sum_probs=164.9

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +.+++|++++.||+|+||+||+|.++.+|+.||+|++++.........+.+.+|+.+|+.++||||++++++|.+...+|
T Consensus         2 i~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             CchHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccc
Confidence            56789999999999999999999999999999999998776555566788899999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~--  460 (489)
                      +|||||+||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+....  
T Consensus        82 iv~ey~~gg~L~~~~~~~--~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~  159 (337)
T d1o6la_          82 FVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG  159 (337)
T ss_dssp             EEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred             cceeccCCCchhhhhhcc--cCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCC
Confidence            999999999999999886  3489999999999999999999999999999999999999999999999999974321  


Q ss_pred             -------------CCce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+.      -..+|+|++|++++||++|..||.
T Consensus       160 ~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~  206 (337)
T d1o6la_         160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY  206 (337)
T ss_dssp             CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCC
Confidence                         1111      134488999999999999999985

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-37  Score=308.85  Aligned_cols=177  Identities=22%  Similarity=0.327  Sum_probs=157.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||+||+|.++.+|+.||+|.++.....   ..+.+.+|+.+++.++||||++++++|.+++.+|+||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~---~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   96 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP---KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCS---CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccCh---HHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEE
Confidence            4799999999999999999999999999999999765432   3467889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      |||+||+|.+++...   .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+....     
T Consensus        97 Ey~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~  173 (293)
T d1yhwa1          97 EYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR  173 (293)
T ss_dssp             ECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCB
T ss_pred             EecCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccccccc
Confidence            999999999988763   489999999999999999999999999999999999999999999999999974321     


Q ss_pred             ----------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                +|      .+...+|+|++|+++++|++|..||.
T Consensus       174 ~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~  217 (293)
T d1yhwa1         174 STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYL  217 (293)
T ss_dssp             CCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCC
Confidence                      11      11234489999999999999999995

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-38  Score=310.91  Aligned_cols=181  Identities=38%  Similarity=0.578  Sum_probs=162.0

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      ++|++++.||+|+||+||+|.++.+|+.||+|++++.........+.+.+|++++++++||||++++++|.+++.+|+||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            57999999999999999999999999999999998765555556778999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-----
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-----  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-----  460 (489)
                      |||+||+|.+++...  +.+++..++.++.|++.||.|||++||+||||||+|||++++|.+||+|||+|+....     
T Consensus        88 Ey~~gg~L~~~~~~~--~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~  165 (288)
T d1uu3a_          88 SYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA  165 (288)
T ss_dssp             CCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC------
T ss_pred             EccCCCCHHHhhhcc--CCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCccc
Confidence            999999999998875  4489999999999999999999999999999999999999999999999999974321     


Q ss_pred             ------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+      +...+|+|++|++++++++|..||.
T Consensus       166 ~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~  211 (288)
T d1uu3a_         166 RANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR  211 (288)
T ss_dssp             ----CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCC
Confidence                        111      1234489999999999999999995

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=314.06  Aligned_cols=182  Identities=23%  Similarity=0.357  Sum_probs=160.3

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      +..++|++++.||+|+||+||+|.++.+|+.||+|++++..  .......+.+|+.+|+.++|||||+++++|.+..++|
T Consensus         3 l~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~   80 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS   80 (322)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCC--CTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEE
T ss_pred             CCccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhh--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            44578999999999999999999999999999999997652  3444577889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCCcEEEEecCCccccC--
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS--  459 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~--  459 (489)
                      +|||||+||+|.+++.+.  ..+++..++.++.|++.||.|||+ +||+||||||+|||++.+|.+||+|||+|+...  
T Consensus        81 iVmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~  158 (322)
T d1s9ja_          81 ICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  158 (322)
T ss_dssp             EEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred             EEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCC
Confidence            999999999999999875  348999999999999999999997 599999999999999999999999999996321  


Q ss_pred             -----------CCC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          460 -----------CKP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----------~~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 .+|      .+...+|+|++|++++|+++|..||.
T Consensus       159 ~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~  204 (322)
T d1s9ja_         159 MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP  204 (322)
T ss_dssp             TC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSS
T ss_pred             ccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                       111      12234589999999999999999995

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=309.63  Aligned_cols=179  Identities=26%  Similarity=0.385  Sum_probs=157.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +.|++++.||+|+||+||+|.++.+++.||+|++++..   ....+.+.+|+++++.++||||+++++++.+++.+|+||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~---~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvm   88 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS---EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILI   88 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSS---SGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCC---HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEE
Confidence            45899999999999999999999999999999997652   344567888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC------
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS------  459 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~------  459 (489)
                      |||++|+|.+++.+.. ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+...      
T Consensus        89 Ey~~~g~L~~~~~~~~-~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~  167 (288)
T d2jfla1          89 EFCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRR  167 (288)
T ss_dssp             ECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHH
T ss_pred             ecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCcccc
Confidence            9999999999986542 458999999999999999999999999999999999999999999999999985221      


Q ss_pred             ---------CCCcee-----------ecccccchHHHHHHHHhCCcccC
Q 042772          460 ---------CKPQVF-----------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ---------~~~~~~-----------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               .+|+.+           ..+|+|++|++++++++|..||.
T Consensus       168 ~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~  216 (288)
T d2jfla1         168 DSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHH  216 (288)
T ss_dssp             TCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCC
Confidence                     122221           34599999999999999999995

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-37  Score=310.16  Aligned_cols=183  Identities=40%  Similarity=0.725  Sum_probs=163.6

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      .+++|++++.||+|+||+||+|.++.+|+.||+|++++.........+.+.+|+.+++.++||||+++++++.+...+|+
T Consensus         2 sl~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i   81 (316)
T d1fota_           2 SLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFM   81 (316)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEE
T ss_pred             chhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeee
Confidence            45789999999999999999999999999999999987655555567889999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      |||||+||+|..++....  .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+....   
T Consensus        82 vmE~~~gg~l~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~  159 (316)
T d1fota_          82 IMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY  159 (316)
T ss_dssp             EECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC
T ss_pred             EeeecCCccccccccccc--cccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEeccccc
Confidence            999999999999998864  488999999999999999999999999999999999999999999999999975331   


Q ss_pred             ---------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ---------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ---------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               +|+      +...+|+|++|.++++|++|..||.
T Consensus       160 ~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~  202 (316)
T d1fota_         160 TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFY  202 (316)
T ss_dssp             CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             cccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCC
Confidence                     111      1234489999999999999999995

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-37  Score=304.14  Aligned_cols=184  Identities=22%  Similarity=0.261  Sum_probs=161.4

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      +++..++|++.+.||+|+||+||+|.++.+++.||+|.++....    ..+.+.+|+.++++++||||++++++|.+.+.
T Consensus        12 wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~----~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM----EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   87 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             cEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc----hHHHHHHHHHHHHhCCCCCEecCCccEeeCCe
Confidence            45667789999999999999999999999999999999875432    34578899999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +++|||||++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||+++++.+||+|||+|+....
T Consensus        88 ~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (287)
T d1opja_          88 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  167 (287)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCS
T ss_pred             eEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCC
Confidence            99999999999999999877666799999999999999999999999999999999999999999999999999975432


Q ss_pred             C----------------Cce------eecccccchHHHHHHHHhCCcccC
Q 042772          461 K----------------PQV------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ~----------------~~~------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                |+.      ...+|+|++|.+++|+++|..||.
T Consensus       168 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~  217 (287)
T d1opja_         168 DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY  217 (287)
T ss_dssp             SSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             CCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCC
Confidence            1                111      123488999999999999777653

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.2e-37  Score=306.97  Aligned_cols=180  Identities=23%  Similarity=0.270  Sum_probs=161.1

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITD  386 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmE  386 (489)
                      .|+.++.||+|+||+||+|.+..+++.||+|++++.........+.+.+|+.++++++||||+++++++.+.+.+|+|||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            49999999999999999999999999999999987765566677889999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-------
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-------  459 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-------  459 (489)
                      ||++|+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|....       
T Consensus        96 ~~~~g~l~~~~~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~G  173 (309)
T d1u5ra_          96 YCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVG  173 (309)
T ss_dssp             CCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCS
T ss_pred             ecCCCchHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCCCCcccc
Confidence            99999998777665  458999999999999999999999999999999999999999999999999997432       


Q ss_pred             ----CCCc---------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 ----CKPQ---------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----~~~~---------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                          .+|+         +...+|+|++|++++|+++|..||.
T Consensus       174 T~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~  215 (309)
T d1u5ra_         174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF  215 (309)
T ss_dssp             CGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             CccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCC
Confidence                1222         2234699999999999999999985

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.9e-36  Score=308.74  Aligned_cols=180  Identities=26%  Similarity=0.384  Sum_probs=158.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||.||+|.++.+|+.||+|++++..   ......+.+|+.+|++++||||++++++|.++..+|+|
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv  104 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY---PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  104 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc---hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            357999999999999999999999999999999997653   23346778899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe--cCCcEEEEecCCccccCC--
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ--KDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld--~~g~vKL~DFGlS~~~~~--  460 (489)
                      ||||+||+|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++  .++.+||+|||+|.....  
T Consensus       105 mE~~~gg~L~~~~~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~  183 (352)
T d1koba_         105 LEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE  183 (352)
T ss_dssp             EECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS
T ss_pred             EEcCCCChHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCC
Confidence            99999999999887653 3589999999999999999999999999999999999998  678999999999975431  


Q ss_pred             ------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|      .+...+|+|++|+++++|++|..||.
T Consensus       184 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~  229 (352)
T d1koba_         184 IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFA  229 (352)
T ss_dssp             CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             ceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCC
Confidence                        11      12234499999999999999999995

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-36  Score=309.02  Aligned_cols=182  Identities=34%  Similarity=0.645  Sum_probs=163.4

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++++.||+|+||.||+|.++.+|+.||+|++++.........+.+.+|+.+|+.++||||+++++++.....+++|
T Consensus        40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            46899999999999999999999999999999999876555555677889999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      |||+.+|+|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+.....   
T Consensus       120 ~e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~  197 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWT  197 (350)
T ss_dssp             EECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCC
T ss_pred             cccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeeccccccc
Confidence            99999999999998763  4899999999999999999999999999999999999999999999999999754321   


Q ss_pred             ---------Cc------eeecccccchHHHHHHHHhCCcccC
Q 042772          462 ---------PQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 ---------~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                               |+      +...+|+|++|+++++|++|..||.
T Consensus       198 ~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~  239 (350)
T d1rdqe_         198 LCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFF  239 (350)
T ss_dssp             CEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCC
Confidence                     11      1234499999999999999999995

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-36  Score=310.61  Aligned_cols=183  Identities=32%  Similarity=0.506  Sum_probs=156.7

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHH---HHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRAC---IEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~---~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      .+++|++++.||+|+||.||+|.++.+|+.||+|++.+...........+.   .++.+++.++||||++++++|.+.+.
T Consensus         2 slddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~   81 (364)
T d1omwa3           2 TMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK   81 (364)
T ss_dssp             CSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE
T ss_pred             CHHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCE
Confidence            467899999999999999999999999999999999865543333333333   34666777889999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+|||||+||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+....
T Consensus        82 ~~ivmE~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~  159 (364)
T d1omwa3          82 LSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK  159 (364)
T ss_dssp             EEEEECCCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSS
T ss_pred             EEEEEEecCCCcHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCC
Confidence            99999999999999999876  3489999999999999999999999999999999999999999999999999974321


Q ss_pred             -------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+       +-..+|+|++|+++++|++|..||.
T Consensus       160 ~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~  207 (364)
T d1omwa3         160 KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFR  207 (364)
T ss_dssp             SCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCC
Confidence                         111       1234489999999999999999995

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-37  Score=300.21  Aligned_cols=182  Identities=19%  Similarity=0.379  Sum_probs=151.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe--CCeEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT--STHICL  383 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~~~l  383 (489)
                      ++|++++.||+|+||+||+|.++.+|+.||+|.+++... .....+.+.+|++++++++||||+++++++.+  ...+|+
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM-TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTS-CHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhC-CHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence            579999999999999999999999999999999987654 34556788999999999999999999999865  456899


Q ss_pred             EEecCCCCCHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          384 ITDFCPGGELFALLDKQ--PMKIFREDSARFYAAEVVIGLEYLHCLG-----IIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~--~~~~l~e~~~~~i~~qI~~aL~yLH~~g-----IvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      |||||++|+|.+++.+.  ....+++..++.++.||+.||.|||++|     |+||||||+|||++.++.+||+|||+|+
T Consensus        83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~  162 (269)
T d2java1          83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  162 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred             EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence            99999999999998652  2345899999999999999999999876     9999999999999999999999999986


Q ss_pred             ccCC---------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSC---------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~---------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....               +|+      +...+|+|++|.+++|+++|..||.
T Consensus       163 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~  215 (269)
T d2java1         163 ILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFT  215 (269)
T ss_dssp             HC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCC
Confidence            4321               111      1234489999999999999999985

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-36  Score=302.62  Aligned_cols=179  Identities=29%  Similarity=0.435  Sum_probs=148.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLIT  385 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVm  385 (489)
                      +.|++.+.||+|+||+||+|.++.+++.||+|++.+....  .....+.+|+.+++.++||||+++++++.+++.+|+||
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~--~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvm   86 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALE--GKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIM   86 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC------------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhh--hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            5699999999999999999999999999999999876432  23456778999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe---cCCcEEEEecCCccccCC--
Q 042772          386 DFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ---KDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       386 Ey~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld---~~g~vKL~DFGlS~~~~~--  460 (489)
                      |||+||+|.+++...  +.+++..+..++.||+.||.|||++||+||||||+|||+.   +++.+||+|||+|+....  
T Consensus        87 E~~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~  164 (307)
T d1a06a_          87 QLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS  164 (307)
T ss_dssp             CCCCSCBHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC----------
T ss_pred             eccCCCcHHHhhhcc--cCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCC
Confidence            999999999999875  4599999999999999999999999999999999999994   578999999999964321  


Q ss_pred             ------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|      .+...+|+|++|+++++|++|..||.
T Consensus       165 ~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~  210 (307)
T d1a06a_         165 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFY  210 (307)
T ss_dssp             --------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCC
Confidence                        11      12234599999999999999999995

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=4.3e-36  Score=305.84  Aligned_cols=180  Identities=29%  Similarity=0.435  Sum_probs=158.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++++.||+|+||.||+|.++.+|+.||+|++.+..   ....+.+.+|+.+|++++||||++++++|.+++.+|+|
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~---~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv  101 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH---ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  101 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS---HHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc---hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            468999999999999999999999999999999997653   34456788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEe--cCCcEEEEecCCccccCC--
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQ--KDGHVVLTDFDLSFMTSC--  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld--~~g~vKL~DFGlS~~~~~--  460 (489)
                      ||||+||+|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++  .++.+||+|||+|+....  
T Consensus       102 mE~~~gg~L~~~l~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~  180 (350)
T d1koaa2         102 YEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ  180 (350)
T ss_dssp             ECCCCSCBHHHHHTCTT-SCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTS
T ss_pred             EEcCCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccccc
Confidence            99999999999996543 3489999999999999999999999999999999999996  468999999999975431  


Q ss_pred             ------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                  +|+      +-..+|+|++|+++++|++|..||.
T Consensus       181 ~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~  226 (350)
T d1koaa2         181 SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG  226 (350)
T ss_dssp             CEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCC
Confidence                        111      1134599999999999999999995

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=7.4e-36  Score=294.55  Aligned_cols=181  Identities=28%  Similarity=0.381  Sum_probs=159.1

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc------hHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeC
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN------RNKVHRACIEREIMSLLD-HPFLPTLYASFQTS  378 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~------~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~  378 (489)
                      ++|++.+.||+|+||+||+|.++.+|+.||+|++++.....      ....+.+.+|+.++++++ ||||++++++|.+.
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            58999999999999999999999999999999998754322      223456888999999997 99999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      ..+|+|||||++|+|.+++..+  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+..
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~  160 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL  160 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             cceEEEEEcCCCchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEc
Confidence            9999999999999999999875  34899999999999999999999999999999999999999999999999999654


Q ss_pred             CC--------------CCcee------------ecccccchHHHHHHHHhCCcccC
Q 042772          459 SC--------------KPQVF------------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~--------------~~~~~------------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..              +|+.+            ..+|+|++|+++++|++|..||.
T Consensus       161 ~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~  216 (277)
T d1phka_         161 DPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW  216 (277)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCC
Confidence            31              11111            23489999999999999999995

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-36  Score=296.89  Aligned_cols=181  Identities=27%  Similarity=0.411  Sum_probs=158.6

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch---HHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR---NKVHRACIEREIMSLLDHPFLPTLYASFQTSTHIC  382 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  382 (489)
                      ++|++++.||+|+||+||+|.++.+|+.||+|++++......   ...+.+.+|+.+|++++||||++++++|.+...+|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            569999999999999999999999999999999986544321   23577889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC----cEEEEecCCcccc
Q 042772          383 LITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG----HVVLTDFDLSFMT  458 (489)
Q Consensus       383 lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g----~vKL~DFGlS~~~  458 (489)
                      +|||||+||+|.+++...  +.+++..++.++.|++.||.|||++||+||||||+|||++.++    .+||+|||+|...
T Consensus        90 iv~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~  167 (293)
T d1jksa_          90 LILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI  167 (293)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhc
Confidence            999999999999999875  3499999999999999999999999999999999999998776    5999999999643


Q ss_pred             CCC--------------C------ceeecccccchHHHHHHHHhCCcccC
Q 042772          459 SCK--------------P------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~~--------------~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...              |      .....+|+|++|++++++++|..||.
T Consensus       168 ~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~  217 (293)
T d1jksa_         168 DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFL  217 (293)
T ss_dssp             TTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCC
Confidence            211              1      12234489999999999999999985

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-36  Score=300.19  Aligned_cols=179  Identities=20%  Similarity=0.285  Sum_probs=156.7

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++++.||+|+||+||+|.++.+++.||+|++++..    .....+.+|+++|+.++||||++++++|.+.+.+|+|
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~----~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lv   79 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG----TDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc----ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            468999999999999999999999999999999997642    2234577899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecC--CcEEEEecCCccccCCC-
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKD--GHVVLTDFDLSFMTSCK-  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~--g~vKL~DFGlS~~~~~~-  461 (489)
                      ||||+||+|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.+  +.+||+|||+++..... 
T Consensus        80 mE~~~gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~  158 (321)
T d1tkia_          80 FEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD  158 (321)
T ss_dssp             ECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC
T ss_pred             EecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCC
Confidence            99999999999997653 348999999999999999999999999999999999999854  48999999999754311 


Q ss_pred             -------------------CceeecccccchHHHHHHHHhCCcccC
Q 042772          462 -------------------PQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -------------------~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                         ..+...+|+|++|++++++++|..||.
T Consensus       159 ~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~  204 (321)
T d1tkia_         159 NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFL  204 (321)
T ss_dssp             EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCC
Confidence                               112234499999999999999999985

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=295.62  Aligned_cols=182  Identities=24%  Similarity=0.366  Sum_probs=155.1

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      +++..++|++.+.||+|+||+||+|..++   .||||+++.... .....+.+.+|+.++++++||||+++++++. ...
T Consensus         3 wei~~~~~~~~~~lG~G~fg~Vy~~~~~~---~vAvK~~~~~~~-~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~   77 (276)
T d1uwha_           3 WEIPDGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQ   77 (276)
T ss_dssp             CBCCTTCCCCCSEEEECSSCEEEEEESSS---EEEEEECCCSSC-CTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSS
T ss_pred             cccccccEEEEEEEeeCCCcEEEEEEECC---EEEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccE
Confidence            45677889999999999999999998653   599999976543 3456788999999999999999999999765 456


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-  459 (489)
                      +++|||||++|+|.+++.... ..+++..+..++.||+.||.|||+++|+||||||+|||++.++.+||+|||+|+... 
T Consensus        78 ~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~  156 (276)
T d1uwha_          78 LAIVTQWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSR  156 (276)
T ss_dssp             CEEEEECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC---
T ss_pred             EEEEEecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccc
Confidence            899999999999999997653 348999999999999999999999999999999999999999999999999986432 


Q ss_pred             ----------------CCCce---------eecccccchHHHHHHHHhCCcccC
Q 042772          460 ----------------CKPQV---------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ----------------~~~~~---------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                      .+|+.         ...+|+|++|.+++|+++|..||.
T Consensus       157 ~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~  210 (276)
T d1uwha_         157 WSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS  210 (276)
T ss_dssp             ---------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCC
Confidence                            11221         123489999999999999999995

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=292.09  Aligned_cols=178  Identities=24%  Similarity=0.355  Sum_probs=154.0

Q ss_pred             cccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe----CCeEEE
Q 042772          308 FKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT----STHICL  383 (489)
Q Consensus       308 y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----~~~~~l  383 (489)
                      |++.+.||+|+||+||+|.++.+++.||+|.+..... .....+.+.+|++++++++||||++++++|.+    ...+|+
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL-TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            4677889999999999999999999999999976543 34556788999999999999999999999875    356899


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCCCCEEEe-cCCcEEEEecCCccccCC
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLG--IIYRDLKPENILLQ-KDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~g--IvHrDLKP~NILld-~~g~vKL~DFGlS~~~~~  460 (489)
                      |||||++|+|.+++.+.  ..+++..++.++.||+.||.|||+++  |+||||||+|||++ +++.+||+|||+|+....
T Consensus        90 vmE~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~  167 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  167 (270)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEeCCCCCcHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccC
Confidence            99999999999999875  34899999999999999999999998  99999999999996 578999999999974321


Q ss_pred             -------------CCce-----eecccccchHHHHHHHHhCCcccC
Q 042772          461 -------------KPQV-----FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -------------~~~~-----~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                   +|+.     ...+|+|++|.++++|++|..||.
T Consensus       168 ~~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~  213 (270)
T d1t4ha_         168 SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYS  213 (270)
T ss_dssp             TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             CccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCC
Confidence                         1221     123489999999999999999995

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-36  Score=300.04  Aligned_cols=181  Identities=34%  Similarity=0.628  Sum_probs=158.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHH-hCCCCCcceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMS-LLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~-~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ++|++++.||+|+||+||+|.++.+++.||+|++++...........+..|..++. .++||||+++++++.+.+.+|+|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            57999999999999999999999999999999998765444445666777777765 68999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      ||||++|+|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++++|.+||+|||+|+....    
T Consensus        82 mEy~~~g~L~~~i~~~~--~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~  159 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAK  159 (320)
T ss_dssp             EECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCC
T ss_pred             EeecCCCcHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhccccccc
Confidence            99999999999998753  489999999999999999999999999999999999999999999999999964321    


Q ss_pred             -----------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|      .+...+|+|++|+++++|++|..||.
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~  204 (320)
T d1xjda_         160 TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFH  204 (320)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCC
Confidence                       11      11234489999999999999999995

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.9e-36  Score=296.63  Aligned_cols=184  Identities=24%  Similarity=0.341  Sum_probs=151.5

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCc---EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGE---LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~---~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      ++..++|++.+.||+|+||+||+|.++.+++   .||+|.+...  ......+.+.+|+.+|++++|||||++++++...
T Consensus        22 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~   99 (299)
T d1jpaa_          22 EIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG--YTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS   99 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSS--CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred             hhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcc--cCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeC
Confidence            4566789999999999999999999987664   5888887654  2345567899999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      +.+++|||||++|+|.+++.... ..+++..+..++.||+.||.|||+++|+||||||+||||+.++.+||+|||+|+..
T Consensus       100 ~~~~iv~Ey~~~g~L~~~~~~~~-~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  178 (299)
T d1jpaa_         100 TPVMIITEFMENGSLDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL  178 (299)
T ss_dssp             SSCEEEEECCTTEEHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             CEEEEEEEecCCCcceeeecccc-CCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEc
Confidence            99999999999999999888753 35899999999999999999999999999999999999999999999999999743


Q ss_pred             CC--------------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SC--------------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~--------------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ..                    +|+      +...+|+|++|.+++|+++ |..||.
T Consensus       179 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~  235 (299)
T d1jpaa_         179 EDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYW  235 (299)
T ss_dssp             -----------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCC
Confidence            21                    011      1123489999999999986 899985

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=294.33  Aligned_cols=182  Identities=21%  Similarity=0.348  Sum_probs=154.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++++.||+|+||+||+|.+..+|+.||+|+++.... .......+.+|+.++++++||||++++++|.+...+|+|
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhc-ChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence            3689999999999999999999999999999999965432 233456788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+. +++.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+....    
T Consensus        80 ~e~~~-~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~  158 (298)
T d1gz8a_          80 FEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT  158 (298)
T ss_dssp             EECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBC
T ss_pred             EeecC-CchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCccc
Confidence            99995 5677777665556699999999999999999999999999999999999999999999999999853321    


Q ss_pred             -----------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +|+       ....+|+|++|+++++|++|..||.
T Consensus       159 ~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~  204 (298)
T d1gz8a_         159 YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFP  204 (298)
T ss_dssp             TTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCC
Confidence                       011       1234589999999999999999985

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.5e-35  Score=288.70  Aligned_cols=181  Identities=22%  Similarity=0.298  Sum_probs=160.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC----eE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST----HI  381 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----~~  381 (489)
                      ++|++.+.||+|+||+||+|.+..+|+.||+|++++....+......+.+|+.+++.++||||+++++++....    .+
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            57999999999999999999999999999999998876666777788999999999999999999999997654    48


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      |+|||||+|++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.++|+|||++..... 
T Consensus        87 ~lvmE~~~g~~L~~~~~~~--~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~  164 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADS  164 (277)
T ss_dssp             EEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC--
T ss_pred             EEEEECCCCCEehhhhccc--CCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhccc
Confidence            9999999999999998775  3489999999999999999999999999999999999999999999999998753210 


Q ss_pred             -----------------CC------ceeecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------------KP------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------------~~------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                       +|      .+...+|+|++|++++++++|..||.
T Consensus       165 ~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~  215 (277)
T d1o6ya_         165 GNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT  215 (277)
T ss_dssp             --------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCC
Confidence                             11      12234599999999999999999995

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-35  Score=284.34  Aligned_cols=179  Identities=25%  Similarity=0.365  Sum_probs=148.7

Q ss_pred             cccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEE
Q 042772          304 GLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       304 ~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  383 (489)
                      ..++|++++.||+|+||+||+|.++. ++.||+|.+++...    ..+.+.+|++++++++||||+++++++..++.+++
T Consensus         3 dp~~~~~~~~iG~G~fg~Vy~~~~~~-~~~vAvK~i~~~~~----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~l   77 (263)
T d1sm2a_           3 DPSELTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIREGAM----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL   77 (263)
T ss_dssp             CCSCEEEEEEEECCSSCCEEEEEETT-TEEEEEEECCSSSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             ChHHcEEEEEEeeCCCeEEEEEEECC-CCEEEEEEECCCcC----cHHHHHHHHHHHHhcCCCCcccccceeccCCceEE
Confidence            34679999999999999999999874 67899999976432    23568889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC---
Q 042772          384 ITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC---  460 (489)
Q Consensus       384 VmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~---  460 (489)
                      ||||+++|+|.+++.... ..+++..+..++.|++.||.|||+++|+||||||+|||+++++.+||+|||+|+....   
T Consensus        78 v~E~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  156 (263)
T d1sm2a_          78 VFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  156 (263)
T ss_dssp             EEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC----------
T ss_pred             EEEecCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCc
Confidence            999999999999987653 4588999999999999999999999999999999999999999999999999864321   


Q ss_pred             -------------CCc------eeecccccchHHHHHHHHhC-CcccC
Q 042772          461 -------------KPQ------VFYHAHVNGFYFIMYKWLTG-YFTYV  488 (489)
Q Consensus       461 -------------~~~------~~~~~~v~s~g~~a~e~~~G-~lpY~  488 (489)
                                   +|+      +...+|+|++|.+++|+++| ..||.
T Consensus       157 ~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~  204 (263)
T d1sm2a_         157 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE  204 (263)
T ss_dssp             --------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             eeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCC
Confidence                         111      11234999999999999984 55553

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=284.55  Aligned_cols=181  Identities=23%  Similarity=0.345  Sum_probs=152.1

Q ss_pred             cccCcccccc-cCCCCceEEEEEEEcC--CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCe
Q 042772          304 GLHHFKPIKP-LGCGDTGSVHLVELQG--AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTH  380 (489)
Q Consensus       304 ~~~~y~~~~~-LG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  380 (489)
                      ..++|.+.+. ||+|+||+||+|.++.  ++..||||++++.  ......+.+.+|+.+|++++||||+++++++.++ .
T Consensus         6 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~--~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~-~   82 (285)
T d1u59a_           6 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG--TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE-A   82 (285)
T ss_dssp             CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS-S
T ss_pred             cccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChh--cCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccC-e
Confidence            3456778775 9999999999998764  4568999999754  2455677899999999999999999999998754 6


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC  460 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~  460 (489)
                      +|+|||||++|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+....
T Consensus        83 ~~lvmE~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~  161 (285)
T d1u59a_          83 LMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGA  161 (285)
T ss_dssp             EEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred             EEEEEEeCCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccc
Confidence            899999999999999986543 4589999999999999999999999999999999999999999999999999974321


Q ss_pred             C------------Ccee------------ecccccchHHHHHHHHh-CCcccC
Q 042772          461 K------------PQVF------------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ~------------~~~~------------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      .            +..+            ..+|+|++|.+++|+++ |..||.
T Consensus       162 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~  214 (285)
T d1u59a_         162 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYK  214 (285)
T ss_dssp             CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCC
Confidence            1            1112            23389999999999986 999995

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=293.89  Aligned_cols=176  Identities=26%  Similarity=0.416  Sum_probs=150.7

Q ss_pred             ccCccccc-ccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHh-CCCCCcceeeEEEEe----C
Q 042772          305 LHHFKPIK-PLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSL-LDHPFLPTLYASFQT----S  378 (489)
Q Consensus       305 ~~~y~~~~-~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~----~  378 (489)
                      +++|+++. .||+|+||+||+|.+..+++.||||++++.        ..+.+|+.++.+ ++||||++++++|.+    .
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~--------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~   81 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGR   81 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc--------HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCC
Confidence            56899875 599999999999999999999999999653        345678888654 589999999999976    4


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEEEEecCCc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLS  455 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vKL~DFGlS  455 (489)
                      ..+|+|||||+||+|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||+|
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a  161 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  161 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             CEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccccccccccccee
Confidence            67999999999999999998765567999999999999999999999999999999999999985   567999999999


Q ss_pred             cccCC--------------CCcee------ecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTSC--------------KPQVF------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~~--------------~~~~~------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      +....              +|+..      ..+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~  214 (335)
T d2ozaa1         162 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFY  214 (335)
T ss_dssp             EECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCE
T ss_pred             eeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCC
Confidence            64321              23322      23389999999999999999984

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=291.93  Aligned_cols=185  Identities=22%  Similarity=0.335  Sum_probs=153.5

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCc-----EEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGE-----LYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~-----~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      ++..++|++.+.||+|+||+||+|.+..+++     .||+|.+....  .......+.+|+.++.++ +|||||++++++
T Consensus        33 ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~  110 (325)
T d1rjba_          33 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLGAC  110 (325)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEecccc--CHHHHHHHHHHHHHHHHhcCCCcEeEEEEEE
Confidence            4556789999999999999999999876554     68999886542  233456788899999988 899999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCCC---------------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCC
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQPM---------------------KIFREDSARFYAAEVVIGLEYLHCLGIIYRDL  434 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~~---------------------~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDL  434 (489)
                      .+.+.+|+|||||++|+|.++|.....                     ..+++..++.++.||+.||.|||+++|+||||
T Consensus       111 ~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDl  190 (325)
T d1rjba_         111 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDL  190 (325)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             eeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence            999999999999999999999976432                     34889999999999999999999999999999


Q ss_pred             CCCCEEEecCCcEEEEecCCccccCC-----------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          435 KPENILLQKDGHVVLTDFDLSFMTSC-----------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       435 KP~NILld~~g~vKL~DFGlS~~~~~-----------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||+|||++.++.+||+|||+|+....                 +|+.      ...+|+|++|++++|+++ |..||.
T Consensus       191 Kp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~  268 (325)
T d1rjba_         191 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP  268 (325)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred             chhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCC
Confidence            99999999999999999999964321                 1111      123489999999999986 999985

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-35  Score=286.26  Aligned_cols=182  Identities=22%  Similarity=0.285  Sum_probs=153.1

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      .+++..++|++.+.||+|+||.||+|.++ ++..||||.++....    ..+.+.+|+.++++++||||+++++++.+ +
T Consensus         7 ~wei~~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~~----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~   80 (272)
T d1qpca_           7 EWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSM----SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-E   80 (272)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             CeecCHHHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCcC----CHHHHHHHHHHHHhCCCCCEeEEEeeecc-C
Confidence            34566788999999999999999999987 478899999975432    23568899999999999999999998754 5


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+++|||||++|+|.+++.......+++..+..++.||+.||.|||+++|+||||||+||||++++.+||+|||+|+...
T Consensus        81 ~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~  160 (272)
T d1qpca_          81 PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE  160 (272)
T ss_dssp             SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             CeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEcc
Confidence            67999999999999998866544458999999999999999999999999999999999999999999999999997543


Q ss_pred             C----------------CCce------eecccccchHHHHHHHHhCCccc
Q 042772          460 C----------------KPQV------FYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       460 ~----------------~~~~------~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      .                +|+.      ...+|+|++|.+++|+++|..||
T Consensus       161 ~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~  210 (272)
T d1qpca_         161 DNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP  210 (272)
T ss_dssp             SSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             CCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCC
Confidence            1                1111      12348999999999999865544

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-35  Score=289.53  Aligned_cols=177  Identities=24%  Similarity=0.296  Sum_probs=146.0

Q ss_pred             cccccCCCCceEEEEEEEcCCCcEEEEEEeecccccch--HHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEec
Q 042772          310 PIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNR--NKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDF  387 (489)
Q Consensus       310 ~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~--~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy  387 (489)
                      .++.||+|+||+||+|.++.+|+.||||+++.......  .....+.+|+.+++.++||||+++++++..++++|+||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            46789999999999999999999999999976543221  1235688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-------
Q 042772          388 CPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-------  460 (489)
Q Consensus       388 ~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-------  460 (489)
                      +.++++..+....  ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+....       
T Consensus        82 ~~~~~~~~~~~~~--~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~  159 (299)
T d1ua2a_          82 METDLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTH  159 (299)
T ss_dssp             CSEEHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCC
T ss_pred             hcchHHhhhhhcc--cCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCcccccc
Confidence            9887766655433  4589999999999999999999999999999999999999999999999999964321       


Q ss_pred             --------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 --------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              +|+       +...+|+|++|++++|+++|..||.
T Consensus       160 ~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~  202 (299)
T d1ua2a_         160 QVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLP  202 (299)
T ss_dssp             SCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             eecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCC
Confidence                    111       1123489999999999999999984

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-34  Score=278.05  Aligned_cols=178  Identities=25%  Similarity=0.346  Sum_probs=154.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      .++|++.+.||+|+||.||+|+++ +++.||+|.+++....    .+.+.+|+.++++++||||+++++++.+++.+++|
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~~----~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv   77 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMS----EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII   77 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEET-TTEEEEEEEEESSSSC----HHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEE
T ss_pred             hHHCEEeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCcCC----HHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEE
Confidence            468999999999999999999986 6889999999865432    35688999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+++|+|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||+|+....    
T Consensus        78 ~Ey~~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~  156 (258)
T d1k2pa_          78 TEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT  156 (258)
T ss_dssp             EECCTTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCC
T ss_pred             EEccCCCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCce
Confidence            99999999999976653 3488999999999999999999999999999999999999999999999999964321    


Q ss_pred             ------------CCce------eecccccchHHHHHHHHh-CCcccC
Q 042772          461 ------------KPQV------FYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ------------~~~~------~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                  +|+.      ...+|+|++|.+++|+++ |..||.
T Consensus       157 ~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~  203 (258)
T d1k2pa_         157 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE  203 (258)
T ss_dssp             CCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             eecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCC
Confidence                        1111      123489999999999987 899985

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=278.11  Aligned_cols=173  Identities=22%  Similarity=0.337  Sum_probs=145.6

Q ss_pred             cccCCCCceEEEEEEEc--CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEEEecCC
Q 042772          312 KPLGCGDTGSVHLVELQ--GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~--~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      +.||+|+||+||+|.+.  .+++.||+|+++... .+....+.+.+|+.++++++||||+++++++.++ ..++|||||+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~lvmE~~~   90 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVMEMAE   90 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SEEEEEECCT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhh-CCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-CEEEEEEcCC
Confidence            46999999999999875  356789999996543 2344567899999999999999999999998654 5789999999


Q ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC--------
Q 042772          390 GGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK--------  461 (489)
Q Consensus       390 ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~--------  461 (489)
                      +|+|.+++...  ..+++..+..++.||+.||.|||+++|+||||||+|||++.++.+||+|||+|+.....        
T Consensus        91 ~g~L~~~l~~~--~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~  168 (277)
T d1xbba_          91 LGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT  168 (277)
T ss_dssp             TEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC--
T ss_pred             CCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhcccccccccccc
Confidence            99999999876  34899999999999999999999999999999999999999999999999999743211        


Q ss_pred             ----------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          462 ----------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       462 ----------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                |+      ....+|+|++|.+++|+++ |..||.
T Consensus       169 ~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~  212 (277)
T d1xbba_         169 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYR  212 (277)
T ss_dssp             --CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             ccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCC
Confidence                      11      1124489999999999986 999995

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-34  Score=280.02  Aligned_cols=183  Identities=21%  Similarity=0.225  Sum_probs=151.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCC----cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAG----ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT  377 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg----~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  377 (489)
                      ++....|+..+.||+|+||.||+|.++.++    ..||+|.++...  .......+.+|+.++++++|||||++++++.+
T Consensus         3 ei~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~   80 (283)
T d1mqba_           3 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK   80 (283)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             cCCHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECccc--ChHHHHHHHHHHHHHHhcCCCCEeeeeEEEec
Confidence            455567999999999999999999988655    479999996542  34445678899999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          378 STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       378 ~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                      ....++|||||.+++|.+++.... ..+++..+..++.||+.||.|||+++|+||||||+||||+.++.+||+|||+|+.
T Consensus        81 ~~~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          81 YKPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             CCceEEEEEecccCcchhhhhccc-ccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhc
Confidence            999999999999999999887653 4589999999999999999999999999999999999999999999999999974


Q ss_pred             cCC------------------CCc------eeecccccchHHHHHHHHhCCccc
Q 042772          458 TSC------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTY  487 (489)
Q Consensus       458 ~~~------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY  487 (489)
                      ...                  +|+      ....+|+|++|.+++|+++|..||
T Consensus       160 ~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~  213 (283)
T d1mqba_         160 LEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP  213 (283)
T ss_dssp             --------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             ccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCc
Confidence            321                  111      112348999999999999865554

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-34  Score=279.43  Aligned_cols=183  Identities=23%  Similarity=0.299  Sum_probs=149.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCC---CcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGA---GELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS  378 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~t---g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  378 (489)
                      ++..++|++.+.||+|+||.||+|.+..+   +..||+|.++..  ........+.+|+.++++++||||+++++++. +
T Consensus         3 ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~   79 (273)
T d1mp8a_           3 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-E   79 (273)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT--TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-S
T ss_pred             CcCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccc--cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence            46667899999999999999999998754   457888888543  34555678899999999999999999999985 5


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      +.+|+||||+++|+|.+++.... ..+++..+..++.||+.||.|||+++|+||||||+||++++++.+||+|||+|+..
T Consensus        80 ~~~~iv~E~~~~g~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~  158 (273)
T d1mp8a_          80 NPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM  158 (273)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             CeEEEEEEeccCCcHHhhhhccC-CCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheec
Confidence            67899999999999999887653 45899999999999999999999999999999999999999999999999999643


Q ss_pred             CCC----------Cc------------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SCK----------PQ------------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~~----------~~------------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ...          +.            +...+|+|++|.+++|+++ |..||.
T Consensus       159 ~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~  211 (273)
T d1mp8a_         159 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ  211 (273)
T ss_dssp             ------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCC
Confidence            210          11            1123489999999999987 898885

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=283.97  Aligned_cols=183  Identities=23%  Similarity=0.297  Sum_probs=153.2

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      .+++..++|++.+.||+|+||+||+|.++.+ +.||||+++....    ..+.+.+|+.++++++|||||++++++.+ +
T Consensus        11 ~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~-~~vAiK~l~~~~~----~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~   84 (285)
T d1fmka3          11 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E   84 (285)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             ceEcCHHHEEEeeEEeeCCCeEEEEEEECCC-CEEEEEEECcccC----CHHHHHHHHHHHHhcccCCEeEEEEEEec-C
Confidence            3466778999999999999999999998765 5799999975432    23568899999999999999999999854 5


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      .+++||||+++|+|..++.......+++..+..++.||+.||.|||++||+||||||+||||+.++.+||+|||+|+...
T Consensus        85 ~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~  164 (285)
T d1fmka3          85 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE  164 (285)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred             CeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhcc
Confidence            68999999999999999876544558999999999999999999999999999999999999999999999999997432


Q ss_pred             C----------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C----------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~----------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                +|+      ....+|+|++|.+++|+++|..||.
T Consensus       165 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~  215 (285)
T d1fmka3         165 DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPY  215 (285)
T ss_dssp             -----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             CCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCC
Confidence            1                111      1123489999999999999766653

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=4.7e-34  Score=281.51  Aligned_cols=180  Identities=19%  Similarity=0.279  Sum_probs=154.0

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++++.||+|+||+||+|.++ +|+.||+|+++.... .....+.+.+|+.+|+.++||||++++++|...+..+++
T Consensus         1 ~~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~   78 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKE-DEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLV   78 (286)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSG-GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEE
T ss_pred             CCCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhc-ChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEE
Confidence            368999999999999999999986 689999999976532 333457888999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC----
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC----  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~----  460 (489)
                      |||+.++.+..+....  +.+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|.....    
T Consensus        79 ~e~~~~~~~~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~  156 (286)
T d1ob3a_          79 FEHLDQDLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK  156 (286)
T ss_dssp             EECCSEEHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred             EEeehhhhHHHHHhhc--CCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCccc
Confidence            9999776666655443  5599999999999999999999999999999999999999999999999999853221    


Q ss_pred             -----------C-------CceeecccccchHHHHHHHHhCCcccC
Q 042772          461 -----------K-------PQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 -----------~-------~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                 +       ......+|+|++|.+++|+++|..||.
T Consensus       157 ~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~  202 (286)
T d1ob3a_         157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFP  202 (286)
T ss_dssp             -----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCC
Confidence                       0       111234489999999999999999984

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=282.07  Aligned_cols=181  Identities=22%  Similarity=0.277  Sum_probs=153.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchH---HHHHHHHHHHHHHhCC--CCCcceeeEEEEeCCe
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRN---KVHRACIEREIMSLLD--HPFLPTLYASFQTSTH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~---~~~~~~~E~~il~~l~--HpnIv~l~~~~~~~~~  380 (489)
                      ++|++.+.||+|+||+||+|.+..+|+.||+|++++.......   ...++.+|+.++++++  ||||+++++++.+.+.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4799999999999999999999999999999999865433211   2234567999999986  8999999999999999


Q ss_pred             EEEEEecCCC-CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-CCcEEEEecCCcccc
Q 042772          381 ICLITDFCPG-GELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-DGHVVLTDFDLSFMT  458 (489)
Q Consensus       381 ~~lVmEy~~g-gsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-~g~vKL~DFGlS~~~  458 (489)
                      +|+||||+.+ +++.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+..
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~--~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~  161 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL  161 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             EEEEEEeccCcchHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceec
Confidence            9999999975 6888888765  34899999999999999999999999999999999999985 479999999999643


Q ss_pred             CC-------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          459 SC-------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~-------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..             +|+.       ...+|+|++|++++++++|..||.
T Consensus       162 ~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~  211 (273)
T d1xwsa_         162 KDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFE  211 (273)
T ss_dssp             CSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCC
Confidence            21             1111       123489999999999999999985

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=276.87  Aligned_cols=181  Identities=17%  Similarity=0.243  Sum_probs=159.2

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeEEEE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  384 (489)
                      +++|++++.||+|+||+||+|.+..+++.||+|+++... .......++.+|+.+++.++||||++++++|.+....+++
T Consensus         1 ~~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv   79 (292)
T d1unla_           1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD-DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSC-SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhh-CChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEE
Confidence            368999999999999999999999999999999997654 3445678889999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC---
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK---  461 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~---  461 (489)
                      |+++.+++|..++...  +.+++..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||.|......   
T Consensus        80 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~  157 (292)
T d1unla_          80 FEFCDQDLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC  157 (292)
T ss_dssp             EECCSEEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSC
T ss_pred             eeeccccccccccccc--cccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCcc
Confidence            9999998888887665  45899999999999999999999999999999999999999999999999999643210   


Q ss_pred             -------------------CceeecccccchHHHHHHHHhCCcccC
Q 042772          462 -------------------PQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 -------------------~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                         .......|+|++|++++++++|..||-
T Consensus       158 ~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  203 (292)
T d1unla_         158 YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF  203 (292)
T ss_dssp             CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSC
T ss_pred             ceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCC
Confidence                               111234589999999999999999863

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=277.31  Aligned_cols=184  Identities=27%  Similarity=0.363  Sum_probs=147.9

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCC-C--cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGA-G--ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST  379 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~t-g--~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  379 (489)
                      ++.++|++++.||+|+||.||+|.+..+ +  ..||+|++++.........+.+.+|+.++++++||||+++++++.+ .
T Consensus         5 i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~   83 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-P   83 (273)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             EchHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-c
Confidence            4567899999999999999999987543 2  4789999987766666677889999999999999999999999965 4


Q ss_pred             eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC
Q 042772          380 HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS  459 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~  459 (489)
                      ..++||||+++|+|.+++..+. ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++...
T Consensus        84 ~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~  162 (273)
T d1u46a_          84 PMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALP  162 (273)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             chheeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcc
Confidence            6789999999999999887653 348999999999999999999999999999999999999999999999999997543


Q ss_pred             CC------------Ccee------------ecccccchHHHHHHHHh-CCcccC
Q 042772          460 CK------------PQVF------------YHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       460 ~~------------~~~~------------~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ..            +..+            ..+|+|++|.+++|+++ |..||.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~  216 (273)
T d1u46a_         163 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWI  216 (273)
T ss_dssp             C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCC
Confidence            11            1111            23599999999999997 899984

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=284.67  Aligned_cols=187  Identities=41%  Similarity=0.661  Sum_probs=159.4

Q ss_pred             CccccccCcccccccCCCCceEEEEEEE---cCCCcEEEEEEeeccccc-chHHHHHHHHHHHHHHhCCC-CCcceeeEE
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVEL---QGAGELYAMKAMEKSVML-NRNKVHRACIEREIMSLLDH-PFLPTLYAS  374 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~---~~tg~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l~H-pnIv~l~~~  374 (489)
                      ...+++++|++++.||+|+||+||+|.+   +.+|+.||+|++++.... +....+.+.+|+.++++++| |||++++++
T Consensus        18 ~~~~~l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~   97 (322)
T d1vzoa_          18 AEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYA   97 (322)
T ss_dssp             CCCCCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEE
T ss_pred             CcccchhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeee
Confidence            3456778999999999999999999987   457899999999765432 22334567789999999976 899999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCC
Q 042772          375 FQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDL  454 (489)
Q Consensus       375 ~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGl  454 (489)
                      +.+...++++|||+.+|+|.+++....  .+++..+..++.||+.||.|||+++|+||||||+|||++.+|.+||+|||+
T Consensus        98 ~~~~~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~  175 (322)
T d1vzoa_          98 FQTETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGL  175 (322)
T ss_dssp             EEETTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred             eccCCceeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccc
Confidence            999999999999999999999998764  478999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC----------------CC--------ceeecccccchHHHHHHHHhCCcccC
Q 042772          455 SFMTSC----------------KP--------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       455 S~~~~~----------------~~--------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      |.....                .|        .....+|+|++|.+++++++|..||.
T Consensus       176 a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~  233 (322)
T d1vzoa_         176 SKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFT  233 (322)
T ss_dssp             EEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             hhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCC
Confidence            853220                01        11224599999999999999999994

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=276.71  Aligned_cols=182  Identities=22%  Similarity=0.391  Sum_probs=151.4

Q ss_pred             CccccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-C
Q 042772          300 GEKIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-S  378 (489)
Q Consensus       300 ~~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~  378 (489)
                      |+.++.++|++++.||+|+||.||+|.++  |..||+|.+++..     ..+.+.+|++++++++||||+++++++.+ .
T Consensus         1 ~w~i~~~~~~~~~~lG~G~fg~Vy~~~~~--~~~vAvK~i~~~~-----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~   73 (262)
T d1byga_           1 GWALNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK   73 (262)
T ss_dssp             CCBCCGGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEECCC-
T ss_pred             CCccCHHHeEEeEEEecCCCeEEEEEEEC--CeEEEEEEECcHH-----HHHHHHHHHHHHHhCCCCCEeeEEEEEEecC
Confidence            46788899999999999999999999985  6789999996542     34668899999999999999999998854 4


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      +.+|+||||+++|+|.+++.......+++..+..++.||+.||.|||+++|+||||||+|||++.+|.+||+|||+|+..
T Consensus        74 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~  153 (262)
T d1byga_          74 GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA  153 (262)
T ss_dssp             -CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC----
T ss_pred             CcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceec
Confidence            66899999999999999997654445899999999999999999999999999999999999999999999999999753


Q ss_pred             CC------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          459 SC------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       459 ~~------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ..            +|+      +...+|+|++|.+++|+++ |..||.
T Consensus       154 ~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~  202 (262)
T d1byga_         154 SSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  202 (262)
T ss_dssp             --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCT
T ss_pred             CCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCC
Confidence            31            111      1234499999999999987 788774

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-33  Score=277.14  Aligned_cols=179  Identities=25%  Similarity=0.337  Sum_probs=148.2

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCc----EEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCCeE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGE----LYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTSTHI  381 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~----~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  381 (489)
                      .+|++++.||+|+||+||+|.+..+|+    .||+|.++..  ......+.+.+|+.++++++||||+++++++.++ ..
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~   85 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA--TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TV   85 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccc--cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-Ce
Confidence            469999999999999999999988876    5777777543  2334467789999999999999999999999765 57


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCC-
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~-  460 (489)
                      +++|||+.+|+|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+.... 
T Consensus        86 ~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~  164 (317)
T d1xkka_          86 QLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE  164 (317)
T ss_dssp             EEEEECCTTCBHHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTT
T ss_pred             eEEEEeccCCcccccccccc-cCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccc
Confidence            88899999999999988763 4589999999999999999999999999999999999999999999999999864321 


Q ss_pred             ----------------CCc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          461 ----------------KPQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       461 ----------------~~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                                      +|+      +...+|+|++|.+++|+++ |..||.
T Consensus       165 ~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~  215 (317)
T d1xkka_         165 EKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD  215 (317)
T ss_dssp             CC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCC
Confidence                            111      1133489999999999997 888885

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-33  Score=281.31  Aligned_cols=177  Identities=20%  Similarity=0.324  Sum_probs=147.9

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----e
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----H  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----~  380 (489)
                      .+|++++.||+|+||+||+|.++.+|+.||||++++..  .....+.+.+|+.+|+.++||||+++++++....     .
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~   85 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD   85 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc--ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccce
Confidence            46999999999999999999999999999999997542  4555678889999999999999999999987653     3


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-  459 (489)
                      +|++ +|+.+|+|.+++...   .+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|.... 
T Consensus        86 ~~l~-~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~  161 (345)
T d1pmea_          86 VYLV-THLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADP  161 (345)
T ss_dssp             EEEE-EECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             EEEE-EeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccC
Confidence            4555 556699999999764   48999999999999999999999999999999999999999999999999985321 


Q ss_pred             -----------------CCCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          460 -----------------CKPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 -----------------~~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                       .+|+.       ....|+|++|.+++++++|..||.
T Consensus       162 ~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~  214 (345)
T d1pmea_         162 DHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP  214 (345)
T ss_dssp             GGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCC
Confidence                             11211       123389999999999999999985

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-33  Score=281.19  Aligned_cols=179  Identities=25%  Similarity=0.399  Sum_probs=150.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeCC-----
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTST-----  379 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----  379 (489)
                      .++|++++.||+|+||+||+|.++.+|+.||||++++.. ......+.+.+|+.+|+.++||||++++++|...+     
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~-~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhh-cChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence            468999999999999999999999999999999997653 34556778899999999999999999999997654     


Q ss_pred             -eEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          380 -HICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       380 -~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                       .+|+||||| +.+|..+++..   .+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+..
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~  171 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA  171 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceEEEEEecc-cccHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceecc
Confidence             579999999 67888887653   4899999999999999999999999999999999999999999999999999754


Q ss_pred             CC------------CCce-------eecccccchHHHHHHHHhCCcccC
Q 042772          459 SC------------KPQV-------FYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~------------~~~~-------~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..            +|+.       ....|+|++|++++++++|..||.
T Consensus       172 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~  220 (346)
T d1cm8a_         172 DSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFK  220 (346)
T ss_dssp             CSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCC
Confidence            31            1221       234589999999999999999985

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=5.5e-33  Score=276.42  Aligned_cols=185  Identities=19%  Similarity=0.282  Sum_probs=155.8

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQ  376 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  376 (489)
                      ++..++|++++.||+|+||+||+|++++     +++.||||.++...  .....+++.+|++++++++||||+++++++.
T Consensus         9 e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           9 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             cCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc--ChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            3445689999999999999999999864     46799999987542  3455678999999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhhCC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCC
Q 042772          377 TSTHICLITDFCPGGELFALLDKQP----------------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDL  434 (489)
Q Consensus       377 ~~~~~~lVmEy~~ggsL~~~L~~~~----------------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDL  434 (489)
                      .....+++|||+++|+|.+++....                      ...+++..+..++.|++.||.|||+++|+||||
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDl  166 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDL  166 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEE
Confidence            9999999999999999999996531                      224789999999999999999999999999999


Q ss_pred             CCCCEEEecCCcEEEEecCCccccCC-----------------CCc------eeecccccchHHHHHHHHhCCc-ccC
Q 042772          435 KPENILLQKDGHVVLTDFDLSFMTSC-----------------KPQ------VFYHAHVNGFYFIMYKWLTGYF-TYV  488 (489)
Q Consensus       435 KP~NILld~~g~vKL~DFGlS~~~~~-----------------~~~------~~~~~~v~s~g~~a~e~~~G~l-pY~  488 (489)
                      ||+|||++.++.+||+|||+|+....                 +|+      +...+|+|++|.+++|+++|.. ||.
T Consensus       167 Kp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~  244 (301)
T d1lufa_         167 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYY  244 (301)
T ss_dssp             SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             cccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCC
Confidence            99999999999999999999863211                 111      1124499999999999998864 564

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.2e-33  Score=277.71  Aligned_cols=183  Identities=22%  Similarity=0.309  Sum_probs=152.2

Q ss_pred             ccccCcccccccCCCCceEEEEEEEcCCCcE--EEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEEEeCC
Q 042772          303 IGLHHFKPIKPLGCGDTGSVHLVELQGAGEL--YAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASFQTST  379 (489)
Q Consensus       303 i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~--vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  379 (489)
                      ++.++|++.+.||+|+||.||+|.++.+|..  ||+|.++..  ......+.+.+|+.+|+++ +||||+++++++...+
T Consensus         7 i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~   84 (309)
T d1fvra_           7 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   84 (309)
T ss_dssp             CCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT
T ss_pred             cCHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcc--cChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCC
Confidence            5667899999999999999999999988864  667776533  2334556789999999998 7999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhhC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC
Q 042772          380 HICLITDFCPGGELFALLDKQ--------------PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG  445 (489)
Q Consensus       380 ~~~lVmEy~~ggsL~~~L~~~--------------~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g  445 (489)
                      .+++||||+++|+|.+++...              ....+++..+..++.||+.||.|||+++|+||||||+|||++.++
T Consensus        85 ~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~  164 (309)
T d1fvra_          85 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  164 (309)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG
T ss_pred             eeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCC
Confidence            999999999999999999753              234589999999999999999999999999999999999999999


Q ss_pred             cEEEEecCCccccC--------CC------C------ceeecccccchHHHHHHHHhCCc-cc
Q 042772          446 HVVLTDFDLSFMTS--------CK------P------QVFYHAHVNGFYFIMYKWLTGYF-TY  487 (489)
Q Consensus       446 ~vKL~DFGlS~~~~--------~~------~------~~~~~~~v~s~g~~a~e~~~G~l-pY  487 (489)
                      .+||+|||+|+...        ..      |      .+...+|+|++|.+++|+++|.. ||
T Consensus       165 ~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~  227 (309)
T d1fvra_         165 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY  227 (309)
T ss_dssp             CEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ceEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCC
Confidence            99999999986422        01      1      11234499999999999998754 55

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.98  E-value=1.4e-32  Score=276.14  Aligned_cols=173  Identities=19%  Similarity=0.298  Sum_probs=148.1

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeC--CeE
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTS--THI  381 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~--~~~  381 (489)
                      .++|++++.||+|+||+||+|.++.+|+.||+|++++..      .+++.+|+.+|+.+. ||||++++++|...  ..+
T Consensus        34 ~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~------~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~  107 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  107 (328)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred             CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH------HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence            468999999999999999999999999999999996542      356778999999985 99999999999754  579


Q ss_pred             EEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-cEEEEecCCccccCC
Q 042772          382 CLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFDLSFMTSC  460 (489)
Q Consensus       382 ~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-~vKL~DFGlS~~~~~  460 (489)
                      ++|||||++++|..+.     +.+++..++.++.||+.||.|||++||+||||||+|||++.++ .+||+|||+|+....
T Consensus       108 ~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~  182 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  182 (328)
T ss_dssp             EEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCT
T ss_pred             eEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccC
Confidence            9999999999997764     3489999999999999999999999999999999999998655 699999999964331


Q ss_pred             --------------CCc-------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 --------------KPQ-------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 --------------~~~-------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                    +|+       ....+|+|++|++++++++|..||.
T Consensus       183 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~  231 (328)
T d3bqca1         183 GQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFF  231 (328)
T ss_dssp             TCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred             CCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCC
Confidence                          111       1223488999999999999999985

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.9e-33  Score=280.23  Aligned_cols=174  Identities=24%  Similarity=0.334  Sum_probs=144.0

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe------CCe
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT------STH  380 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~------~~~  380 (489)
                      +|+.++.||+|+||+||+|.++.+|+.||||++.+....       ..+|+.+|++++||||++++++|..      ..+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~-------~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~   93 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF-------KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY   93 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS-------CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH-------HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceE
Confidence            699999999999999999999999999999999765321       2359999999999999999999854      336


Q ss_pred             EEEEEecCCCCCHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCC-cEEEEecCCccc
Q 042772          381 ICLITDFCPGGELFALLDK--QPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDG-HVVLTDFDLSFM  457 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~--~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g-~vKL~DFGlS~~  457 (489)
                      +|+|||||+++ +.+.+..  .....+++..++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||+|..
T Consensus        94 ~~lv~Ey~~~~-~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~  172 (350)
T d1q5ka_          94 LNLVLDYVPET-VYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  172 (350)
T ss_dssp             EEEEEECCSEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEE
T ss_pred             EEEEEeccCCc-cHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhh
Confidence            89999999765 4443322  2334589999999999999999999999999999999999999775 899999999864


Q ss_pred             cCC---------------------CCceeecccccchHHHHHHHHhCCcccC
Q 042772          458 TSC---------------------KPQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       458 ~~~---------------------~~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ...                     ...+....|+|++|++++|+++|..||.
T Consensus       173 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~  224 (350)
T d1q5ka_         173 LVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP  224 (350)
T ss_dssp             CCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             ccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCC
Confidence            321                     1112234489999999999999999984

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.5e-32  Score=273.23  Aligned_cols=186  Identities=23%  Similarity=0.325  Sum_probs=152.0

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcCCC-------cEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceee
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQGAG-------ELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLY  372 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg-------~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  372 (489)
                      +.+..++|++.+.||+|+||.||+|+...++       ..||+|.+++..  .......+.+|...+.++ +||||++++
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~e~~~l~~~~~HpnIv~~~   85 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINLL   85 (299)
T ss_dssp             TBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECccc--ChHHHHHHHHHHHHHHHhcCCCeEEecc
Confidence            3466789999999999999999999987654       479999997653  344567788888888887 799999999


Q ss_pred             EEEEeCCeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCC
Q 042772          373 ASFQTSTHICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPEN  438 (489)
Q Consensus       373 ~~~~~~~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~N  438 (489)
                      ++|.++..+++|||||++|+|.+++....              ...+++..+..++.||+.||.|||+++|+||||||+|
T Consensus        86 ~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~N  165 (299)
T d1fgka_          86 GACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARN  165 (299)
T ss_dssp             EEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             cccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccc
Confidence            99999999999999999999999997642              2458999999999999999999999999999999999


Q ss_pred             EEEecCCcEEEEecCCccccCCC-----------------Cc------eeecccccchHHHHHHHHh-CCcccC
Q 042772          439 ILLQKDGHVVLTDFDLSFMTSCK-----------------PQ------VFYHAHVNGFYFIMYKWLT-GYFTYV  488 (489)
Q Consensus       439 ILld~~g~vKL~DFGlS~~~~~~-----------------~~------~~~~~~v~s~g~~a~e~~~-G~lpY~  488 (489)
                      ||++.++.+||+|||+++.....                 |+      +-..+|+|++|.+++|+++ |..||.
T Consensus       166 iLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~  239 (299)
T d1fgka_         166 VLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  239 (299)
T ss_dssp             EEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             eeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCC
Confidence            99999999999999998743211                 11      1123489999999999986 788885

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-32  Score=277.42  Aligned_cols=179  Identities=23%  Similarity=0.332  Sum_probs=150.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEeC-----Ce
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQTS-----TH  380 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----~~  380 (489)
                      ++|++++.||+|+||+||+|.+..+|+.||||++++... +....+++.+|+.+|+.++||||+++++++...     ..
T Consensus        18 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhc-ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            679999999999999999999999999999999976543 445567788999999999999999999998643     23


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccC-
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTS-  459 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~-  459 (489)
                      .+++|+|+.+|+|.+++..+   .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+|++|||+|.... 
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~---~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  173 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTG
T ss_pred             eEEEEEeecCCchhhhcccc---cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCc
Confidence            45666777899999999653   48999999999999999999999999999999999999999999999999986432 


Q ss_pred             ------------------CCCceeecccccchHHHHHHHHhCCcccC
Q 042772          460 ------------------CKPQVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ------------------~~~~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                        .........|+|++|++++++++|..||.
T Consensus       174 ~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~  220 (348)
T d2gfsa1         174 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFP  220 (348)
T ss_dssp             GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCC
Confidence                              11122345699999999999999999984

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.8e-32  Score=268.87  Aligned_cols=185  Identities=23%  Similarity=0.315  Sum_probs=142.6

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      ++..++|++.+.||+|+||.||+|.+..     +++.||+|.++...  .......+..|..++.++ +||||+.+++++
T Consensus         9 ei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~--~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~   86 (299)
T d1ywna1           9 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLGAC   86 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC------CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEcccc--CcHHHHHHHHHHHHHHhhcCCCeEEEeeeee
Confidence            3555789999999999999999999865     34789999987542  344456677788877766 689999999987


Q ss_pred             EeC-CeEEEEEecCCCCCHHHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEE
Q 042772          376 QTS-THICLITDFCPGGELFALLDKQP--------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENIL  440 (489)
Q Consensus       376 ~~~-~~~~lVmEy~~ggsL~~~L~~~~--------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NIL  440 (489)
                      ... ..+++|||||++|+|.+++....              ...+++..+..++.||+.||.|||+++|+||||||+|||
T Consensus        87 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NIL  166 (299)
T d1ywna1          87 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL  166 (299)
T ss_dssp             CSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCcccee
Confidence            654 46899999999999999997642              234889999999999999999999999999999999999


Q ss_pred             EecCCcEEEEecCCccccCCC-----------------Cc------eeecccccchHHHHHHHHhC-CcccC
Q 042772          441 LQKDGHVVLTDFDLSFMTSCK-----------------PQ------VFYHAHVNGFYFIMYKWLTG-YFTYV  488 (489)
Q Consensus       441 ld~~g~vKL~DFGlS~~~~~~-----------------~~------~~~~~~v~s~g~~a~e~~~G-~lpY~  488 (489)
                      +++++.+||+|||+|+.....                 |+      ....+|+|++|.+++|+++| ..||.
T Consensus       167 l~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~  238 (299)
T d1ywna1         167 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP  238 (299)
T ss_dssp             ECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCC
Confidence            999999999999999643211                 11      11234899999999999876 45664

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-32  Score=272.02  Aligned_cols=181  Identities=24%  Similarity=0.273  Sum_probs=148.5

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-------
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-------  377 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------  377 (489)
                      .++|++++.||+|+||+||+|.++.+|+.||||++..... ......++.+|+.+|+.++||||+++++++..       
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~   87 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   87 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----C-TTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhc-chHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccc
Confidence            4689999999999999999999999999999999876533 23345677889999999999999999998855       


Q ss_pred             -CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          378 -STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       378 -~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                       ...+|+||||+.++.+......  ...+++..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||+|.
T Consensus        88 ~~~~~~iv~e~~~~~~~~~~~~~--~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~  165 (318)
T d3blha1          88 CKGSIYLVFDFCEHDLAGLLSNV--LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR  165 (318)
T ss_dssp             ---CEEEEEECCCEEHHHHHTCT--TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             cCceEEEEEeccCCCccchhhhc--ccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceee
Confidence             3468999999976655544333  3458999999999999999999999999999999999999999999999999985


Q ss_pred             ccCC-------------------CC-------ceeecccccchHHHHHHHHhCCcccC
Q 042772          457 MTSC-------------------KP-------QVFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       457 ~~~~-------------------~~-------~~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....                   +|       ......|+|++|++++|+++|..||.
T Consensus       166 ~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~  223 (318)
T d3blha1         166 AFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQ  223 (318)
T ss_dssp             ECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCC
Confidence            3320                   01       11234489999999999999999985

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.4e-32  Score=270.28  Aligned_cols=186  Identities=17%  Similarity=0.166  Sum_probs=157.0

Q ss_pred             ccccccCcccccccCCCCceEEEEEEEcC-----CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEE
Q 042772          301 EKIGLHHFKPIKPLGCGDTGSVHLVELQG-----AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASF  375 (489)
Q Consensus       301 ~~i~~~~y~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  375 (489)
                      +++..++|++.+.||+|+||.||+|.++.     ++..||||.+++.  ........+.+|+.++++++||||+++++++
T Consensus        15 ~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~--~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~   92 (308)
T d1p4oa_          15 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA--ASMRERIEFLNEASVMKEFNCHHVVRLLGVV   92 (308)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT--SCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             eeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcc--cChHHHHHHHHHHHHHHHcCCCCEeeeeeEE
Confidence            46677899999999999999999999863     3578999999754  2445566789999999999999999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhC--------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcE
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQ--------PMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHV  447 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~--------~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~v  447 (489)
                      ..+...++||||+++|+|.+++...        ....+++..+..++.|++.||.|||+++|+||||||+|||+++++.+
T Consensus        93 ~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~  172 (308)
T d1p4oa_          93 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTV  172 (308)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCE
T ss_pred             ecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceE
Confidence            9999999999999999999998642        22346889999999999999999999999999999999999999999


Q ss_pred             EEEecCCccccCC------------CC-----------ceeecccccchHHHHHHHHhCC-cccC
Q 042772          448 VLTDFDLSFMTSC------------KP-----------QVFYHAHVNGFYFIMYKWLTGY-FTYV  488 (489)
Q Consensus       448 KL~DFGlS~~~~~------------~~-----------~~~~~~~v~s~g~~a~e~~~G~-lpY~  488 (489)
                      ||+|||+|+....            .+           .....+|+|++|.+++|+++|. .||.
T Consensus       173 Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~  237 (308)
T d1p4oa_         173 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ  237 (308)
T ss_dssp             EECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTT
T ss_pred             EEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCC
Confidence            9999999964321            01           1122448999999999999885 6664

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=267.83  Aligned_cols=184  Identities=21%  Similarity=0.301  Sum_probs=155.3

Q ss_pred             cccccCcccccccCCCCceEEEEEEEc-----CCCcEEEEEEeecccccchHHHHHHHHHHHHHHhC-CCCCcceeeEEE
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQ-----GAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLL-DHPFLPTLYASF  375 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~-----~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  375 (489)
                      ++..++|++.+.||+|+||.||+|.+.     .+++.||+|.+++..  .......+.+|+.+++.+ +||||+++++++
T Consensus        19 ~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~   96 (311)
T d1t46a_          19 EFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA--HLTEREALMSELKVLSYLGNHMNIVNLLGAC   96 (311)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECccc--CHHHHHHHHHHHHHHHhccCCCCEEEEEEEE
Confidence            455678999999999999999999874     456799999997653  344566788999999998 699999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhhCC----------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCE
Q 042772          376 QTSTHICLITDFCPGGELFALLDKQP----------------MKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENI  439 (489)
Q Consensus       376 ~~~~~~~lVmEy~~ggsL~~~L~~~~----------------~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NI  439 (489)
                      .....+++|||||++|+|.+++....                ...+++..+..++.||+.||.|||+++++||||||+||
T Consensus        97 ~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NI  176 (311)
T d1t46a_          97 TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI  176 (311)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             eeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccccccc
Confidence            99999999999999999999997642                22488999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEecCCccccCCCC-----------------c------eeecccccchHHHHHHHHh-CCccc
Q 042772          440 LLQKDGHVVLTDFDLSFMTSCKP-----------------Q------VFYHAHVNGFYFIMYKWLT-GYFTY  487 (489)
Q Consensus       440 Lld~~g~vKL~DFGlS~~~~~~~-----------------~------~~~~~~v~s~g~~a~e~~~-G~lpY  487 (489)
                      +++.++.+||+|||+++......                 +      ....+|+|++|++++|+++ |..||
T Consensus       177 l~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~  248 (311)
T d1t46a_         177 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPY  248 (311)
T ss_dssp             EEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             cccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCC
Confidence            99999999999999997543211                 1      1123388999999999997 55555

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.6e-32  Score=267.19  Aligned_cols=182  Identities=20%  Similarity=0.274  Sum_probs=145.8

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCC-CcEEEEEEeecccccchHHHHHHHHHHHHHHhC---CCCCcceeeEEEEe---
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGA-GELYAMKAMEKSVMLNRNKVHRACIEREIMSLL---DHPFLPTLYASFQT---  377 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~t-g~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~~---  377 (489)
                      .++|++++.||+|+||+||+|.+..+ ++.||+|+++...... .....+.+|+.+++.|   +||||++++++|..   
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccc-hHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence            36899999999999999999999765 6789999997653321 1223345677776655   89999999999853   


Q ss_pred             --CCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCc
Q 042772          378 --STHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLS  455 (489)
Q Consensus       378 --~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS  455 (489)
                        ...++++|||+.++.+.... ......+++..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        85 ~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~  163 (305)
T d1blxa_          85 DRETKLTLVFEHVDQDLTTYLD-KVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA  163 (305)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHH-HSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             ccCceEEEEEEeccCCchhhhh-hccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhh
Confidence              34789999999776654443 334456899999999999999999999999999999999999999999999999998


Q ss_pred             cccC--------------CCCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          456 FMTS--------------CKPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       456 ~~~~--------------~~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ....              .+|+      +....|+|++|++++|+++|..||.
T Consensus       164 ~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~  216 (305)
T d1blxa_         164 RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFR  216 (305)
T ss_dssp             CCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             hhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCC
Confidence            6432              1111      1234499999999999999999985

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-31  Score=270.18  Aligned_cols=178  Identities=22%  Similarity=0.361  Sum_probs=148.6

Q ss_pred             ccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe------C
Q 042772          305 LHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT------S  378 (489)
Q Consensus       305 ~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~------~  378 (489)
                      +++|++++.||+|+||+||+|.++.+|+.||||++.+... +.....++.+|+.++++++||||++++++|..      .
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhc-CHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence            4789999999999999999999999999999999986643 45566788999999999999999999999964      3


Q ss_pred             CeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCcccc
Q 042772          379 THICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMT  458 (489)
Q Consensus       379 ~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~  458 (489)
                      .++|+|||||.+ ++.+.+..    .+++..++.++.||+.||.|||++||+||||||+|||++.++.+|++|||+++..
T Consensus        95 ~~~~iv~Ey~~~-~l~~~~~~----~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~  169 (355)
T d2b1pa1          95 QDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  169 (355)
T ss_dssp             CEEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             ceeEEEEeccch-HHHHhhhc----CCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcc
Confidence            689999999965 56665543    3899999999999999999999999999999999999999999999999997533


Q ss_pred             CC--------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          459 SC--------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       459 ~~--------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      ..              +|+      .....|+|++|++++++++|..||.
T Consensus       170 ~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~  219 (355)
T d2b1pa1         170 GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP  219 (355)
T ss_dssp             -----------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCC
Confidence            21              111      1234589999999999999999984

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-31  Score=264.44  Aligned_cols=175  Identities=19%  Similarity=0.220  Sum_probs=146.9

Q ss_pred             ccccCCCCceEEEEEEEcCCC---cEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-CCeEEEEEe
Q 042772          311 IKPLGCGDTGSVHLVELQGAG---ELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPFLPTLYASFQT-STHICLITD  386 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg---~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~~~~~lVmE  386 (489)
                      .+.||+|+||+||+|.+..++   ..||+|.+++.  .+.....++.+|++++++++||||+++++++.. +...++|||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E  109 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLP  109 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCC--CCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcc--cCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEE
Confidence            578999999999999986543   36899998643  356667889999999999999999999998765 568999999


Q ss_pred             cCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecCCccccCCC-----
Q 042772          387 FCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCK-----  461 (489)
Q Consensus       387 y~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFGlS~~~~~~-----  461 (489)
                      ||++|+|.+++.... ..+++..+..++.|++.||.|||+.+|+||||||+|||+++++.+||+|||+++.....     
T Consensus       110 ~~~~g~l~~~~~~~~-~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~  188 (311)
T d1r0pa_         110 YMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV  188 (311)
T ss_dssp             CCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCT
T ss_pred             EeecCchhhhhcccc-ccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccc
Confidence            999999999988654 34778889999999999999999999999999999999999999999999999743211     


Q ss_pred             --------Ccee------------ecccccchHHHHHHHHhCCcccC
Q 042772          462 --------PQVF------------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       462 --------~~~~------------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                              +..+            ..+|+|++|.+++|+++|..||.
T Consensus       189 ~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~  235 (311)
T d1r0pa_         189 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPY  235 (311)
T ss_dssp             TCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred             eecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCC
Confidence                    1111            23389999999999999877764

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.97  E-value=9.3e-31  Score=259.36  Aligned_cols=176  Identities=20%  Similarity=0.267  Sum_probs=150.5

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC-CCcceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH-PFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l~~~~~~~~~~~lV  384 (489)
                      ++|++++.||+|+||+||+|.+..+|+.||+|+++....     ...+..|.++++.+.| +|++.+++++......++|
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~v   79 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLV   79 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC-----cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEE
Confidence            579999999999999999999999999999999865422     1245678889998865 8999999999999999999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec-----CCcEEEEecCCccccC
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK-----DGHVVLTDFDLSFMTS  459 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~-----~g~vKL~DFGlS~~~~  459 (489)
                      |||+ +++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.     ++.+||+|||+|+...
T Consensus        80 me~~-~~~l~~~~~~~~-~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~  157 (293)
T d1csna_          80 IDLL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR  157 (293)
T ss_dssp             EECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred             EEec-CCCHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcc
Confidence            9999 789999987754 45899999999999999999999999999999999999974     5789999999997432


Q ss_pred             C----------------------CCc------eeecccccchHHHHHHHHhCCcccC
Q 042772          460 C----------------------KPQ------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       460 ~----------------------~~~------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      .                      +|+      ....+|+|++|++++|+++|..||.
T Consensus       158 ~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~  214 (293)
T d1csna_         158 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQ  214 (293)
T ss_dssp             CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             cCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCC
Confidence            1                      011      1233489999999999999999995

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-31  Score=262.11  Aligned_cols=171  Identities=23%  Similarity=0.311  Sum_probs=140.9

Q ss_pred             CcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHH--HHhCCCCCcceeeEEEEeCC----e
Q 042772          307 HFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREI--MSLLDHPFLPTLYASFQTST----H  380 (489)
Q Consensus       307 ~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~i--l~~l~HpnIv~l~~~~~~~~----~  380 (489)
                      +|.+.+.||+|+||.||+|++  +|+.||+|+++...      ...+..|.++  +.+++||||+++++++.++.    .
T Consensus         4 ~~~l~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~------~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~   75 (303)
T d1vjya_           4 TIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ   75 (303)
T ss_dssp             GEEEEEEEECCSSSEEEEEEE--TTEEEEEEEECGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccc------hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceE
Confidence            578889999999999999987  48899999986432      2233344444  55789999999999997653    6


Q ss_pred             EEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH--------CCCeecCCCCCCEEEecCCcEEEEec
Q 042772          381 ICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC--------LGIIYRDLKPENILLQKDGHVVLTDF  452 (489)
Q Consensus       381 ~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~--------~gIvHrDLKP~NILld~~g~vKL~DF  452 (489)
                      +|+|||||++|+|.+++.+.   .+++.....++.|++.||.|||+        +||+||||||+||||+.++.+||+||
T Consensus        76 ~~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DF  152 (303)
T d1vjya_          76 LWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  152 (303)
T ss_dssp             EEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCC
T ss_pred             EEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEec
Confidence            89999999999999999874   37899999999999999999996        59999999999999999999999999


Q ss_pred             CCccccCC-------------------CCcee------------ecccccchHHHHHHHHhCCcccC
Q 042772          453 DLSFMTSC-------------------KPQVF------------YHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       453 GlS~~~~~-------------------~~~~~------------~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                      |++.....                   +|+.+            ..+|+|++|.+++|+++|..||.
T Consensus       153 Gl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~  219 (303)
T d1vjya_         153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGG  219 (303)
T ss_dssp             TTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTT
T ss_pred             CccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCC
Confidence            99864321                   11111            13489999999999999988763

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.8e-30  Score=257.28  Aligned_cols=176  Identities=19%  Similarity=0.292  Sum_probs=145.3

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCCCC-cceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDHPF-LPTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~~lV  384 (489)
                      ++|++++.||+|+||.||+|.+..+|+.||+|++......     ..+..|+++++.++|+| |+.+..++......++|
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-----~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~iv   81 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   81 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTS-----CCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccC-----HHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEE
Confidence            4699999999999999999999999999999998754321     24677999999998665 55566667788899999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEec---CCcEEEEecCCccccCC-
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQK---DGHVVLTDFDLSFMTSC-  460 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~---~g~vKL~DFGlS~~~~~-  460 (489)
                      |||+ +++|.+.+.... ..+++..+..++.|++.||+|||++||+||||||+|||++.   +..+||+|||+|+.... 
T Consensus        82 me~~-~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~  159 (299)
T d1ckia_          82 MELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  159 (299)
T ss_dssp             EECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCT
T ss_pred             EEEc-CCchhhhhhhcc-CCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceecccc
Confidence            9999 667777776543 45899999999999999999999999999999999999863   55799999999974321 


Q ss_pred             ----------------CCc-----------eeecccccchHHHHHHHHhCCcccC
Q 042772          461 ----------------KPQ-----------VFYHAHVNGFYFIMYKWLTGYFTYV  488 (489)
Q Consensus       461 ----------------~~~-----------~~~~~~v~s~g~~a~e~~~G~lpY~  488 (489)
                                      .+.           ....+|+|++|++++||++|..||.
T Consensus       160 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~  214 (299)
T d1ckia_         160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ  214 (299)
T ss_dssp             TTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCccc
Confidence                            011           1234489999999999999999995

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.6e-26  Score=231.12  Aligned_cols=184  Identities=21%  Similarity=0.297  Sum_probs=144.1

Q ss_pred             cccccCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-----------CCCcce
Q 042772          302 KIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-----------HPFLPT  370 (489)
Q Consensus       302 ~i~~~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-----------HpnIv~  370 (489)
                      .+..++|++++.||+|+||+||+|.++.+|+.||||++++..    ...+.+.+|+.+++.+.           ||||++
T Consensus         9 ~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~----~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~   84 (362)
T d1q8ya_           9 PYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK----VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILK   84 (362)
T ss_dssp             EETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCC
T ss_pred             CccCCcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc----cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEE
Confidence            344467999999999999999999999999999999997642    23355667888877764           578999


Q ss_pred             eeEEEEe--CCeEEEEEecCCCC-CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCeecCCCCCCEEEecCC-
Q 042772          371 LYASFQT--STHICLITDFCPGG-ELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHC-LGIIYRDLKPENILLQKDG-  445 (489)
Q Consensus       371 l~~~~~~--~~~~~lVmEy~~gg-sL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~-~gIvHrDLKP~NILld~~g-  445 (489)
                      +++++..  ....+++|+++..+ .............+++..+..++.||+.||.|||+ +||+||||||+|||++.++ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~  164 (362)
T d1q8ya_          85 LLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDS  164 (362)
T ss_dssp             CCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEET
T ss_pred             EEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCc
Confidence            9988864  35667777766544 44444555555668999999999999999999998 8999999999999998765 


Q ss_pred             -----cEEEEecCCccccCCC------------Cc------eeecccccchHHHHHHHHhCCcccCC
Q 042772          446 -----HVVLTDFDLSFMTSCK------------PQ------VFYHAHVNGFYFIMYKWLTGYFTYVP  489 (489)
Q Consensus       446 -----~vKL~DFGlS~~~~~~------------~~------~~~~~~v~s~g~~a~e~~~G~lpY~~  489 (489)
                           .++++|||.|......            |+      +...+|+|++|+++.++++|..||.+
T Consensus       165 ~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~  231 (362)
T d1q8ya_         165 PENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP  231 (362)
T ss_dssp             TTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             ccccceeeEeecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCC
Confidence                 4999999998643311            11      12345899999999999999999863

>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Putative blue light receptor, phot-lov1 domain
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.91  E-value=2.5e-24  Score=181.24  Aligned_cols=108  Identities=39%  Similarity=0.835  Sum_probs=102.9

Q ss_pred             ccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccccccc
Q 042772           76 IEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNF  155 (489)
Q Consensus        76 ~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (489)
                      +.++|+|||+..||++|+|||++|++++||+++|++|+++++|..++                                 
T Consensus         2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~---------------------------------   48 (109)
T d1n9la_           2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEG---------------------------------   48 (109)
T ss_dssp             CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT---------------------------------
T ss_pred             ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCcceeeeccc---------------------------------
Confidence            56899999998899999999999999999999999999999998775                                 


Q ss_pred             ccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCc
Q 042772          156 TLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSD  225 (489)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te  225 (489)
                               .++...+.+++++..++.+++++..++|||+.||+.++++|++|++|++++|+++.+|||.
T Consensus        49 ---------~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~G~v~~~v~~~~DITa  109 (109)
T d1n9la_          49 ---------TDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS  109 (109)
T ss_dssp             ---------CCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred             ---------CCHHHhhhhhhHhhcCCceeeeEEEEecCCeEEEEEEEEEEEECCCCCEEEEEEEEEECCC
Confidence                     7788899999999999999999999999999999999999999999999999999999984

>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Photoreceptor phy3 flavin-binding domain, lov2
species: Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=99.87  E-value=2.8e-22  Score=166.49  Aligned_cols=104  Identities=69%  Similarity=1.167  Sum_probs=99.1

Q ss_pred             CcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccccccccc
Q 042772           78 KNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTL  157 (489)
Q Consensus        78 ~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (489)
                      ++|+|||++.||++|+|||+||+++|||+++|++|+++..+..+.                                   
T Consensus         1 ~~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~-----------------------------------   45 (104)
T d1jnua_           1 KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRG-----------------------------------   45 (104)
T ss_dssp             CEEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTT-----------------------------------
T ss_pred             CeEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCccceeccccc-----------------------------------
Confidence            479999999999999999999999999999999999998777665                                   


Q ss_pred             CcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccC
Q 042772          158 GCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDG  223 (489)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~  223 (489)
                             ..+...+.++.+++.++.+.+++.+++|||+.+|+.++++|++|++|++++|+++.+||
T Consensus        46 -------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~pi~d~~G~v~~~i~i~~DI  104 (104)
T d1jnua_          46 -------TDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMRDENGDVQYFIGVQQEM  104 (104)
T ss_dssp             -------SCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEECTTTSSCCEEEEEEEEC
T ss_pred             -------cchHHHhhhhhhhhcCceeEeEEEEEecccceEEEEEEEEEEECCCCCEEEEEEEEEcC
Confidence                   78889999999999999999999999999999999999999999999999999999997

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=1.8e-22  Score=186.58  Aligned_cols=136  Identities=17%  Similarity=0.144  Sum_probs=106.0

Q ss_pred             ccccccCCCCceEEEEEEEcCCCcEEEEEEeeccccc---------------chHHHHHHHHHHHHHHhCCCCCcceeeE
Q 042772          309 KPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVML---------------NRNKVHRACIEREIMSLLDHPFLPTLYA  373 (489)
Q Consensus       309 ~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~---------------~~~~~~~~~~E~~il~~l~HpnIv~l~~  373 (489)
                      .+.+.||+|+||.||+|.+. +|+.||+|++......               ..........|...+..+.|++++..++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~   81 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA   81 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred             hhCCEeeeCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEE
Confidence            46789999999999999985 5899999987542211               0111234456788899999999999886


Q ss_pred             EEEeCCeEEEEEecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCCCCEEEecCCcEEEEecC
Q 042772          374 SFQTSTHICLITDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFD  453 (489)
Q Consensus       374 ~~~~~~~~~lVmEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~gIvHrDLKP~NILld~~g~vKL~DFG  453 (489)
                      +..    .+++|||+++..+.+         +++..+..++.|++.+|.|||++||+||||||+|||++++ .++|+|||
T Consensus        82 ~~~----~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG  147 (191)
T d1zara2          82 WEG----NAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFP  147 (191)
T ss_dssp             EET----TEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCT
T ss_pred             ecC----CEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECC
Confidence            532    379999998765533         3445567789999999999999999999999999999865 58999999


Q ss_pred             CccccC
Q 042772          454 LSFMTS  459 (489)
Q Consensus       454 lS~~~~  459 (489)
                      +|....
T Consensus       148 ~a~~~~  153 (191)
T d1zara2         148 QSVEVG  153 (191)
T ss_dssp             TCEETT
T ss_pred             CcccCC
Confidence            997664

>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Erg potassium channel, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-21  Score=164.56  Aligned_cols=107  Identities=25%  Similarity=0.477  Sum_probs=99.3

Q ss_pred             CcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccc--cccccchhhhhhccccccchhHHHHHHHhhhccccccc
Q 042772           78 KNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSF--LELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNF  155 (489)
Q Consensus        78 ~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (489)
                      .+|+|+|+..||.+|+|||++|++++||+++|++|+++..  +..++                                 
T Consensus         2 ~~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~---------------------------------   48 (110)
T d1bywa_           2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPC---------------------------------   48 (110)
T ss_dssp             CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTT---------------------------------
T ss_pred             ceEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCcccccceeeh---------------------------------
Confidence            5799999999999999999999999999999999999753  34443                                 


Q ss_pred             ccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          156 TLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                               +++..+..++.++..+++++.++.+++++|+.+|+.++++|++|++|++++|+++..||||+
T Consensus        49 ---------~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w~~~~~~pi~d~~G~v~~~i~~~~DITer  110 (110)
T d1bywa_          49 ---------TQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK  110 (110)
T ss_dssp             ---------CCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             ---------eecccccccchhhcccccccceeeeeecccceeeeeeeEEEEECCCCCEEEEEEEEEECCCC
Confidence                     67888999999999999999999999999999999999999999999999999999999986

>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Heme-binding PAS domain
domain: Direct oxygen sensor protein, DOS
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1.4e-15  Score=125.76  Aligned_cols=111  Identities=19%  Similarity=0.316  Sum_probs=80.3

Q ss_pred             HHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhh
Q 042772           69 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKK  148 (489)
Q Consensus        69 ~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (489)
                      +.++++++.++++++|+   ++.|+|+|++|++++||+++|++|+++..+...... +                      
T Consensus         3 ~~~~~e~~~d~i~~~d~---~g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~-~----------------------   56 (113)
T d1v9ya_           3 FFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLR-P----------------------   56 (113)
T ss_dssp             HHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGT-T----------------------
T ss_pred             HHHHHHcCcCcEEEEeC---CCCEEEEchhHhhhhccchhhhcCcceecccccccc-c----------------------
Confidence            67899999999999999   999999999999999999999999998766544310 0                      


Q ss_pred             cccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeecc
Q 042772          149 NYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD  222 (489)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d  222 (489)
                                     .........+............+...++|||+.+|++++++|+.++.|  .+|+++.+|
T Consensus        57 ---------------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~--~~~~~v~rD  113 (113)
T d1v9ya_          57 ---------------AHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKVSAEGK--VYYLALVRD  113 (113)
T ss_dssp             ---------------THHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEC
T ss_pred             ---------------ccccccccccccccccccccceeeeeccccceeEEEEEEEEEEEECCe--EEEEEEEEC
Confidence                           011111222222233344466778889999999999999999998655  458888887

>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Heme-binding PAS domain
domain: Histidine kinase FixL heme domain
species: Rhizobium meliloti [TaxId: 382]

Probab=99.59  E-value=3.4e-15  Score=127.18  Aligned_cols=111  Identities=18%  Similarity=0.257  Sum_probs=88.8

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHh
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALW  146 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                      ..+..+++.++++|+++|.   +|.|+++|++|++++||+++|++|+++..+..+.                        
T Consensus        16 ~~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~------------------------   68 (130)
T d1ew0a_          16 AHLRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEP------------------------   68 (130)
T ss_dssp             SCHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTT------------------------
T ss_pred             HHHHHHHHcCCCeEEEEeC---CccEEEEHHHHHHhhcCCHHHhcCCccccccccc------------------------
Confidence            3588999999999999999   9999999999999999999999999987666553                        


Q ss_pred             hhcccccccccCcccccCCCHHHHHHHHHHHHcCCc----EEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeecc
Q 042772          147 KKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQRE----ITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLD  222 (489)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d  222 (489)
                                        ........+...+..++.    ...++..++|||+.+|+.++++|+.+..+  ..|+++.+|
T Consensus        69 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~--~~~~~i~rD  128 (130)
T d1ew0a_          69 ------------------YRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRD  128 (130)
T ss_dssp             ------------------TGGGHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEE
T ss_pred             ------------------hhHHHHHHHHHHHHhCCCccccceeeEEEEcCCCCEEEEEEEEEEEEECCe--EEEEEEEEE
Confidence                              112222333444443333    56788889999999999999999988654  458899999


Q ss_pred             CC
Q 042772          223 GS  224 (489)
Q Consensus       223 ~T  224 (489)
                      ||
T Consensus       129 IT  130 (130)
T d1ew0a_         129 LT  130 (130)
T ss_dssp             CC
T ss_pred             CC
Confidence            97

>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Heme-binding PAS domain
domain: Histidine kinase FixL heme domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.58  E-value=5.9e-16  Score=126.40  Aligned_cols=102  Identities=19%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             CcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccccccccc
Q 042772           78 KNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTL  157 (489)
Q Consensus        78 ~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (489)
                      ++|+++|+   +|.|+++|++|++++||+++|++|+++..+..+..                                  
T Consensus         1 dgi~~~D~---~G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~----------------------------------   43 (106)
T d1xj3a1           1 DAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPD----------------------------------   43 (106)
T ss_dssp             CCEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTH----------------------------------
T ss_pred             CEEEEECC---CCcEEEEcHHHHHHhhhchHhhcCCCccccccccc----------------------------------
Confidence            68999999   99999999999999999999999999877765541                                  


Q ss_pred             CcccccCCCHHHHHHHHHHHHc----CCcEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCCcc
Q 042772          158 GCCLEISSDQATVSKIRDAVRE----QREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDH  226 (489)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~Te~  226 (489)
                              .......+...+..    ......++..++|||+.+|+.++++|+.+.++  .+++++.+||||+
T Consensus        44 --------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~v~~~~~~~~~~~~--~~~~~~~~DITE~  106 (106)
T d1xj3a1          44 --------RSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFPMHLSIGEMQSGGE--PYFTGFVRDLTEH  106 (106)
T ss_dssp             --------HHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECHHH
T ss_pred             --------ccchhhhhhhhhhhcccccccccceeeeeeccceEEEEEEEEEEEEECCe--EEEEEEEEeCCCC
Confidence                    11122222222222    22355788899999999999999999998654  4689999999974

>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Hypoxia-inducible factor Hif2a, C-terminal domain
domain: Hypoxia-inducible factor Hif2a, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.4e-15  Score=125.85  Aligned_cols=105  Identities=16%  Similarity=0.162  Sum_probs=88.0

Q ss_pred             cEEE--ECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccc
Q 042772           79 NFVI--TDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFT  156 (489)
Q Consensus        79 ~~~i--~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (489)
                      ..+|  .|+   ||.|+|+|++|++++||+.+|++|++...+..++                                  
T Consensus         6 ~~fi~r~~~---dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~e----------------------------------   48 (114)
T d1p97a_           6 KTFLSRHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFYHAL----------------------------------   48 (114)
T ss_dssp             EEEEEEECT---TTSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSS----------------------------------
T ss_pred             CEEEEEECC---CCcEEEECHHHHHHcCCCcccccccccccccccc----------------------------------
Confidence            4455  488   9999999999999999999999999976555553                                  


Q ss_pred             cCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccC-CCCeeEEeeeeccCCcccc
Q 042772          157 LGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDH-KGELQYFIGVQLDGSDHVE  228 (489)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~-~g~~~~~~~~~~d~Te~ke  228 (489)
                              ......+.+...+..+..+..++...+|||+.+|+....+|++|. +|++.+++++.+||||+|+
T Consensus        49 --------d~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~wv~~~~~~~~~~~~~~~~~ii~~~~dite~k~  113 (114)
T d1p97a_          49 --------DSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK  113 (114)
T ss_dssp             --------SHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred             --------ccccceeeeeecccccceeecceeeeeecCcceEEEEEEEEEEeCCCCCEEEEEEEEEECChhhc
Confidence                    333444556666666777888999999999999999999999997 5899999999999999986

>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: PYP-like
domain: Photoactive yellow protein, PYP
species: Ectothiorhodospira halophila [TaxId: 1053]

Probab=99.30  E-value=4.5e-12  Score=108.07  Aligned_cols=99  Identities=11%  Similarity=0.051  Sum_probs=83.1

Q ss_pred             hhHHHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCc-cccccccchhhhhhccccccchhHHHHHHH
Q 042772           67 IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNC-SFLELTEYTREEILGRNCSTYTFMLYFLAL  145 (489)
Q Consensus        67 ~~~~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (489)
                      ..+..+||.+++++++.|+   +|.|+++|++|++++||+++|++|+++ .++..+.                       
T Consensus        17 ~~~d~~ld~~p~gi~~lD~---~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~-----------------------   70 (125)
T d1nwza_          17 KMDDGQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCT-----------------------   70 (125)
T ss_dssp             TCCHHHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG-----------------------
T ss_pred             HHHHHHHhCCCccEEEEeC---CCCEEEEcHHHHHhhccchHhhcCCCHHHccCchh-----------------------
Confidence            4456899999999999999   999999999999999999999999996 4443322                       


Q ss_pred             hhhcccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCC
Q 042772          146 WKKNYGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHK  210 (489)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~  210 (489)
                                         ..+.....+.+++..+.....+....+++|+++|+.+++.++.+.+
T Consensus        71 -------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~v~v~l~~~~~g~  116 (125)
T d1nwza_          71 -------------------DSPEFYGKFKEGVASGNLNTMFEYTFDYQMTPTKVKVHMKKALSGD  116 (125)
T ss_dssp             -------------------CSTTTHHHHHHHHHHTCCEEEEEEEECTTSCCEEEEEEEEECSSSS
T ss_pred             -------------------hhhheeeeceeeeecCCcceEEEEEeccCCcEEEEEEEEEEecCCC
Confidence                               3444566788999999988888788999999999999999876643

>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: PYP-like
domain: PYP domain of sensor histidine kinase Ppr
species: Rhodospirillum centenum [TaxId: 34018]

Probab=99.27  E-value=6.5e-12  Score=104.83  Aligned_cols=96  Identities=11%  Similarity=-0.010  Sum_probs=76.8

Q ss_pred             HHHHHhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhc
Q 042772           70 ATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKN  149 (489)
Q Consensus        70 ~~~~~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (489)
                      ..+||.++++|+++|.   +|.|+++|+++++++||+++|++|+++..+-.|+                           
T Consensus         6 ~A~ld~~p~gvi~~D~---~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~---------------------------   55 (110)
T d1mzua_           6 TAEFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPC---------------------------   55 (110)
T ss_dssp             CTTGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG---------------------------
T ss_pred             HHHHhCCCcEEEEEcC---CCCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCCh---------------------------
Confidence            4678999999999999   9999999999999999999999999974333332                           


Q ss_pred             ccccccccCcccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccC
Q 042772          150 YGVYNFTLGCCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDH  209 (489)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~  209 (489)
                                    ...+.....+.+++..++.-...-...+++|+++++.+++.++.+.
T Consensus        56 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~G~~~~v~v~~~~~~~~  101 (110)
T d1mzua_          56 --------------TNIPAFSGRFMDGVTSGTLDARFDFVFDFQMAPVRVQIRMQNAGVP  101 (110)
T ss_dssp             --------------GCSTTTHHHHHHHHHTSCCEEEEEEEEECSSCEEEEEEEEEECSST
T ss_pred             --------------hhhHHHHHHHHHHHhccccCcceEEEEecCCceEEEEEEEEEecCC
Confidence                          1345566778888888876444334468999999999999887653

>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: N-terminal PAS domain of Pas kinase
domain: N-terminal PAS domain of Pas kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.9e-12  Score=108.14  Aligned_cols=105  Identities=14%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             HhccCcEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhccccc
Q 042772           74 ERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVY  153 (489)
Q Consensus        74 ~~~~~~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (489)
                      +.+.++|+++|+.  +|.|++||++|++++||+++|++|++...|..+.                               
T Consensus         5 ~~~n~AI~~id~~--~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~-------------------------------   51 (114)
T d1ll8a_           5 PEFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRS-------------------------------   51 (114)
T ss_dssp             TTTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCT-------------------------------
T ss_pred             hhcCcEEEEEECC--CCEEEEECHHHHHhhcCCHHHHcCCCeeeecCcc-------------------------------
Confidence            3567899999962  7999999999999999999999999988777554                               


Q ss_pred             ccccCcccccCCCHHHHHHHHHHHHcCC----cEEEEEEeeecCCCeeeEEEeecccccCCCCeeEEeeeeccCC
Q 042772          154 NFTLGCCLEISSDQATVSKIRDAVREQR----EITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGS  224 (489)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g~~~~~~~~~~d~T  224 (489)
                                 ........+...+..+.    ....++...+|+|+.||++++++++..+.+  ..++++.+||+
T Consensus        52 -----------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~pvevs~~~i~~~~~--~~~l~vi~dV~  113 (114)
T d1ll8a_          52 -----------DSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIPVSVWMKRMRQERR--LCCVVVLEPVE  113 (114)
T ss_dssp             -----------TTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTCCCEEEECCEECCBSSSS--BEEEEEEEECC
T ss_pred             -----------cHHHHHHHHHHHHhcCCCccceeeEEEEEEccCCcEEEEEEEEEEEEECCe--EEEEEEEEECc
Confidence                       12222222222222221    122356678999999999999999986544  35789999993

>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: PAS domain of steroid receptor coactivator 1A, NCo-A1
domain: PAS domain of steroid receptor coactivator 1A, NCo-A1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=2.1e-08  Score=83.02  Aligned_cols=94  Identities=10%  Similarity=0.083  Sum_probs=71.9

Q ss_pred             ECCCCCCCCEEEecHhhHHhcCCCh-hhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccCccc
Q 042772           83 TDPRIPDNPIIFASDSFLELTEYTR-EEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLGCCL  161 (489)
Q Consensus        83 ~d~~~~~~~i~~~n~~~~~~~gy~~-~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (489)
                      .|+   +|.|+++|++..+++||+. ||++|+++-.|..|+                                       
T Consensus         8 h~~---~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPe---------------------------------------   45 (109)
T d1oj5a_           8 QDT---TGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQ---------------------------------------   45 (109)
T ss_dssp             ECT---TCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCB---------------------------------------
T ss_pred             ECC---CceEEEECHHHhhHhhcCCHHHHcCCcHHHeECcc---------------------------------------
Confidence            477   9999999999999999995 999999987777775                                       


Q ss_pred             ccCCCHHHHH-HHHHHHHcCCcEEEEEEeeecCCCeeeEEEeecccccCCC-CeeEEeeee
Q 042772          162 EISSDQATVS-KIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDHKG-ELQYFIGVQ  220 (489)
Q Consensus       162 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~p~~~~~g-~~~~~~~~~  220 (489)
                        +......+ .....+..+...+.+....+|||+..|+..+..+++|..| +..+++++.
T Consensus        46 --D~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vWv~t~~~~~~~~~~~~~~~Ii~~h  104 (109)
T d1oj5a_          46 --GREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIH  104 (109)
T ss_dssp             --TTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEEEEEECC----CCCEEEEEE
T ss_pred             --cchHHHhhHHHHHHHhhcccchhhhhhhhccCcEEEEEEEEEEEECCCCCcccEEEEEE
Confidence              11111222 3456677888899999999999999999999999999865 455555653

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.41  E-value=8.3e-07  Score=83.02  Aligned_cols=140  Identities=13%  Similarity=0.057  Sum_probs=93.4

Q ss_pred             cCcccccccCCCCceEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEEE
Q 042772          306 HHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICLI  384 (489)
Q Consensus       306 ~~y~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lV  384 (489)
                      ..|+.++..+.++.+.||+..  ..++.+.+|.........   ...+.+|..++..+. +--+++++.+....+..++|
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~--~~~~~~vlk~~~~~~~~~---~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv   88 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLV--GENENLYLKMTDSRYKGT---TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL   88 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEE--CSSCEEEEEEECGGGTTS---TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred             hceEEEEcCCCCCCCcEEEEE--eCCCeEEEEEcCCCcccc---hhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEE
Confidence            457777766656667999875  346677888876543222   234556888877663 44467888888888899999


Q ss_pred             EecCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-------------------------------------
Q 042772          385 TDFCPGGELFALLDKQPMKIFREDSARFYAAEVVIGLEYLHCL-------------------------------------  427 (489)
Q Consensus       385 mEy~~ggsL~~~L~~~~~~~l~e~~~~~i~~qI~~aL~yLH~~-------------------------------------  427 (489)
                      |++++|.++.+.....    ...   ..++.+++..+..||+.                                     
T Consensus        89 ~~~l~G~~~~~~~~~~----~~~---~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (263)
T d1j7la_          89 MSEADGVLCSEEYEDE----QSP---EKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED  161 (263)
T ss_dssp             EECCSSEEHHHHTTTC----SCH---HHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTT
T ss_pred             EEeccccccccccccc----ccH---HHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhccccc
Confidence            9999998876543221    111   11233344444444421                                     


Q ss_pred             ----------------------CCeecCCCCCCEEEecCCcEEEEecCCccc
Q 042772          428 ----------------------GIIYRDLKPENILLQKDGHVVLTDFDLSFM  457 (489)
Q Consensus       428 ----------------------gIvHrDLKP~NILld~~g~vKL~DFGlS~~  457 (489)
                                            .++|+|+.|.||++++++.+-|+||+.+..
T Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             CSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             ccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                                  258999999999999776667999998863

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.80  E-value=1.9e-05  Score=78.91  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=49.7

Q ss_pred             ccccCCCCceEEEEEEEcCCCcEEEEEEeecccccc----hHHHHHHHHHHHHHHhC-CC--CCcceeeEEEEeCCeEEE
Q 042772          311 IKPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLN----RNKVHRACIEREIMSLL-DH--PFLPTLYASFQTSTHICL  383 (489)
Q Consensus       311 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~----~~~~~~~~~E~~il~~l-~H--pnIv~l~~~~~~~~~~~l  383 (489)
                      .+.||.|....||++....+++.+++|.-.+.....    .....+...|.+.|+.+ .+  ..+++++.+  +....++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            457899999999999987778899999754321110    11234455688887765 22  346666643  4445678


Q ss_pred             EEecCCCCC
Q 042772          384 ITDFCPGGE  392 (489)
Q Consensus       384 VmEy~~ggs  392 (489)
                      |||++++..
T Consensus       109 vmE~L~~~~  117 (392)
T d2pula1         109 VMEDLSHLK  117 (392)
T ss_dssp             EECCCTTSE
T ss_pred             EEeccCCcc
Confidence            999997654

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.71  E-value=8.5e-05  Score=68.41  Aligned_cols=74  Identities=15%  Similarity=0.100  Sum_probs=50.2

Q ss_pred             ccCCCCc-eEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC--CCCcceeeEEEEeCCeEEEEEecCC
Q 042772          313 PLGCGDT-GSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD--HPFLPTLYASFQTSTHICLITDFCP  389 (489)
Q Consensus       313 ~LG~G~f-G~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~--HpnIv~l~~~~~~~~~~~lVmEy~~  389 (489)
                      .+..|.. +.||+.... .+..+++|.......      ..+..|..+++.+.  .-.+++++.+..+.+..++||++++
T Consensus        17 ~~~~G~s~~~v~r~~~~-~~~~~vlK~~~~~~~------~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~   89 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQ-GRPVLFVKTDLSGAL------NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVP   89 (255)
T ss_dssp             ECSCTTSSCEEEEEECT-TSCCEEEEEECSCTT------SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCS
T ss_pred             EcCCcccCCeEEEEEeC-CCCEEEEEeCCccCH------hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeee
Confidence            4445553 678988754 366788897654321      23455777777663  2346778888788888999999998


Q ss_pred             CCCH
Q 042772          390 GGEL  393 (489)
Q Consensus       390 ggsL  393 (489)
                      |.++
T Consensus        90 G~~~   93 (255)
T d1nd4a_          90 GQDL   93 (255)
T ss_dssp             SEET
T ss_pred             cccc
Confidence            7654

>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: BphP N-terminal domain-like
domain: Sensor protein PhyB2
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.84  E-value=0.0011  Score=53.90  Aligned_cols=41  Identities=12%  Similarity=0.079  Sum_probs=33.7

Q ss_pred             cEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccc
Q 042772           79 NFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT  121 (489)
Q Consensus        79 ~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~  121 (489)
                      .+++.|+  +++.|+|||++-.+++|++.++++|++...+-++
T Consensus        19 ~Llvld~--~d~~I~~vS~N~~~lLG~~~~~llG~~l~dll~~   59 (114)
T d2oola2          19 YLFVVSE--TDLRIASVSANVEDLLRQPPASLLNVPIAHYLTA   59 (114)
T ss_dssp             EEEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCH
T ss_pred             EEEEEEC--CCCEEEEEcCCHHHHhCCChHHHcCCCHHHhCCH
Confidence            3455564  3899999999999999999999999998655544

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.45  E-value=0.0021  Score=63.43  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=48.7

Q ss_pred             cccCCCCceEEEEEEEcC-------CCcEEEEEEeecccccchHHHHHHHHHHHHHHhCC-CCCcceeeEEEEeCCeEEE
Q 042772          312 KPLGCGDTGSVHLVELQG-------AGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLD-HPFLPTLYASFQTSTHICL  383 (489)
Q Consensus       312 ~~LG~G~fG~Vy~a~~~~-------tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~l  383 (489)
                      +.|+.|-.-.+|++....       ..+.|.+++.-..  .   ......+|..+++.+. +.-.+++++++..    .+
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~--~---~~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~  118 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--E---TESHLVAESVIFTLLSERHLGPKLYGIFSG----GR  118 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--C---CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EE
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCc--c---hhhHHHHHHHHHHHHHhCCCCCeEEEEcCC----ce
Confidence            567888899999998753       2456777765421  1   1223446888888774 5455688877643    68


Q ss_pred             EEecCCCCCH
Q 042772          384 ITDFCPGGEL  393 (489)
Q Consensus       384 VmEy~~ggsL  393 (489)
                      ||||++|.+|
T Consensus       119 I~efi~g~~l  128 (395)
T d1nw1a_         119 LEEYIPSRPL  128 (395)
T ss_dssp             EECCCCEEEC
T ss_pred             EEEEeccccC
Confidence            9999987443

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0053  Score=58.73  Aligned_cols=67  Identities=7%  Similarity=-0.016  Sum_probs=41.6

Q ss_pred             eEEEEEEEcCCCcEEEEEEeecccccchHHHHHHHHHHHHHHhCCC-----CCcceee--EEEEeCCeEEEEEecCCCC
Q 042772          320 GSVHLVELQGAGELYAMKAMEKSVMLNRNKVHRACIEREIMSLLDH-----PFLPTLY--ASFQTSTHICLITDFCPGG  391 (489)
Q Consensus       320 G~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~l~--~~~~~~~~~~lVmEy~~gg  391 (489)
                      -.||++... +|..|++|+..+...    ....+..|...+..|..     |..+..-  ..+......+.++++++|.
T Consensus        36 N~vy~v~~~-dg~~~VlK~~rp~~~----s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~  109 (325)
T d1zyla1          36 NRVYQFQDE-DRRRFVVKFYRPERW----TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGR  109 (325)
T ss_dssp             SEEEEECCT-TCCCEEEEEECTTTS----CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCE
T ss_pred             ceeEEEEcC-CCCEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCc
Confidence            489999875 488899998865422    23445667777766532     2112211  1234566789999999763

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.76  E-value=0.051  Score=50.85  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=27.1

Q ss_pred             CCCeecCCCCCCEEEecCCcEEEEecCCcc
Q 042772          427 LGIIYRDLKPENILLQKDGHVVLTDFDLSF  456 (489)
Q Consensus       427 ~gIvHrDLKP~NILld~~g~vKL~DFGlS~  456 (489)
                      .|++|+|+.+.||+++.+...-|+||+.+.
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccCCcchhhhhcccccceeEecccccc
Confidence            479999999999999988777899999985

>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: BphP N-terminal domain-like
domain: Bacteriophytochrome BphP
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.79  E-value=0.083  Score=43.39  Aligned_cols=39  Identities=10%  Similarity=0.061  Sum_probs=32.4

Q ss_pred             cEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccc
Q 042772           79 NFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLE  119 (489)
Q Consensus        79 ~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~  119 (489)
                      .++..|+  +++.|+.||..-.+++|++.++++|++.+.+-
T Consensus        37 ~LLald~--~~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll   75 (127)
T d2o9ca2          37 ALLTADG--HSGEVLQMSLNAATFLGQEPTVLRGQTLAALL   75 (127)
T ss_dssp             EEEEEET--TTCBEEEEETTHHHHHSSCHHHHTTCBHHHHC
T ss_pred             EEEEEEC--CCCEEEEECCCHHHHhCCChHHHcCCCHHHHC
Confidence            3445565  38999999999999999999999999977554

>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: BphP N-terminal domain-like
domain: Phytochrome-like protein Cph1
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.73  E-value=0.077  Score=43.61  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             EEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccc
Q 042772           80 FVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELT  121 (489)
Q Consensus        80 ~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~  121 (489)
                      ++..|+  ++..|+.|+..-.+++|++.++++|++..-+-++
T Consensus        29 LLald~--~~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~   68 (127)
T d2veaa3          29 VVVLQE--PDLTISQISANCTGILGRSPEDLLGRTLGEVFDS   68 (127)
T ss_dssp             EEEEET--TTTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBC
T ss_pred             EEEEEC--CCCEEEEEcCCHHHHhCcChHHHcCCCHHHHCCH
Confidence            344454  3899999999999999999999999998766544

>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: BphP N-terminal domain-like
domain: Bacteriophytochrome BphP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.19  E-value=0.7  Score=36.60  Aligned_cols=75  Identities=9%  Similarity=0.010  Sum_probs=51.7

Q ss_pred             cEEEECCCCCCCCEEEecHhhHHhcCCChhhhcCCCccccccccchhhhhhccccccchhHHHHHHHhhhcccccccccC
Q 042772           79 NFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCSFLELTEYTREEILGRNCSTYTFMLYFLALWKKNYGVYNFTLG  158 (489)
Q Consensus        79 ~~~i~d~~~~~~~i~~~n~~~~~~~gy~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (489)
                      .++..|+   ++.|+.||..-.+++|++. +.+|+....+..                                      
T Consensus        24 ~LLald~---~~~I~~~S~N~~~~lg~~~-~~L~~~~~~~~~--------------------------------------   61 (113)
T d3c2wa3          24 ALVTLRA---DGMVLAASENIQALLGFVA-SPGSYLTQEQVG--------------------------------------   61 (113)
T ss_dssp             EEEEECT---TSBEEEEETTHHHHTSSCC-CTTCBCCHHHHH--------------------------------------
T ss_pred             EEEEEcC---CCeEEEEcCCHHHHhCCCh-hHhcccHHHHhC--------------------------------------
Confidence            4456687   8999999999999999985 467776543322                                      


Q ss_pred             cccccCCCHHHHHHHHHHHHcCCcEEEEEEeeecCCCeeeEEEeec
Q 042772          159 CCLEISSDQATVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQ  204 (489)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~  204 (489)
                              ......|+..+......... ...+-+|+.||..+|.+
T Consensus        62 --------~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~d~~~H~~   98 (113)
T d3c2wa3          62 --------PEVLRMLEEGLTGNGPWSNS-VETRIGEHLFDVIGHSY   98 (113)
T ss_dssp             --------HHHHHHHHHHHSCSSCCCCE-EEECCSSSCEEEEEEEE
T ss_pred             --------HHHHHHHHhhhhcCCCceeE-EEeccCCeEEEEEEEEE
Confidence                    23456677777666655433 23456888899887754