Citrus Sinensis ID: 042784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MGSAEEKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKAP
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEEcccccccccccccEEEEEEEccccccccccEEEEEEEEEEcccccccccccccccccccccccccEEEccEEEEEEEccccccccccEEEccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccEEEcccccccHHHHHHHHcccccEEEEcccccHHHHHHHHHcccccEEEEEccccccccccccccccHHHHHHHHHcEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHHHHHHHccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccHHHHcccccccEEEEcccccccccccccEEEEEEEEEccccccccEEEEEEEEEEcccccccccccccccccccccccccEEEEcEEEEEEEccccccccccEEEEcccccHHEEEEcccccEEEccccccccHHHHHHHcccccHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHccccHHEcccccccHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccccEEEEHHEEccccccccccccHHHHHHHHHHHEEcEEEEccHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHcHHHHHHHHccccccEEEEEEccc
Coil and Loop (DISEMBL)
mgsaeekletveSKEWYISAyasdgvptsdhlKLRSASVSLAIDSIPDHHVAVETLWISIdpylratmtgtndglyfpqfnLNQVILAFGIARVirskdskysdgdivLRAFLpvaeysllpcdlltrkldpasgipfpdylsslgipgfAAWVGIEvlgqpksgsnvFVSAAAGGVGMFAGQLAKLkgckvvgstgsddnvkllkeefgyddafnynsemsFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEvkmegfmigshmdrFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLgslfsssnigkVVIQVKAP
Flexible Loop (DISEMBL)
mgsaeeklETVESKEWYISAYasdgvptsdHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIrskdskysdgDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVgstgsddnvklLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLgslfsssnigkvviqvkap
Low Complexity Region (SEG)
MGSAEEKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVesfleslgslfsssNIGKVVIQVKAP
Disordered region (IsUnstruct)
**************EWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEV****************FTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ****
Disordered Region (DISOPRED)
************SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKAP
Disordered Region (DISEMBL)
***********ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKAP
Disordered Region (DISPRO)
*************KEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSAEEKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q39172	345	NADP-dependent alkenal do	no	no	0.932	0.962	0.399	1e-61
Q6WAU0	342	(+)-pulegone reductase OS	N/A	no	0.935	0.973	0.379	7e-61
Q39173	343	NADP-dependent alkenal do	no	no	0.910	0.944	0.395	4e-59
O34812	339	Putative NADP-dependent o	yes	no	0.924	0.970	0.348	3e-49
Q9C0Y6	349	Zinc-type alcohol dehydro	yes	no	0.834	0.851	0.358	5e-49
P76113	345	NADPH-dependent curcumin	N/A	no	0.943	0.973	0.321	4e-45
Q5BK81	351	Prostaglandin reductase 2	yes	no	0.926	0.940	0.328	4e-45
Q32L99	351	Prostaglandin reductase 2	yes	no	0.926	0.940	0.316	3e-44
Q91YR9	329	Prostaglandin reductase 1	yes	no	0.912	0.987	0.319	5e-44
Q5R806	351	Prostaglandin reductase 2	yes	no	0.926	0.940	0.322	2e-43

>sp|Q39172|P1_ARATH NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1

 Score =  237 bits (605), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/353 (39%), Positives = 201/353 (56%), Gaps = 21/353 (5%)

Query: 10  TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPD--HHVAVETLWISIDPYLRAT 67
           T  +K+  +  Y S G PT       + +V L    +P+  + V V+ L++S DPY+R  
Sbjct: 2   TATNKQVILKDYVS-GFPTESDFDFTTTTVEL---RVPEGTNSVLVKNLYLSCDPYMRIR 57

Query: 68  M------TGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL 121
           M      T      Y P     Q I  +G++R+I S    Y  GD+ L   +   EYS++
Sbjct: 58  MGKPDPSTAALAQAYTP----GQPIQGYGVSRIIESGHPDYKKGDL-LWGIVAWEEYSVI 112

Query: 122 -PCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMF 180
            P      K+   + +P   Y   LG+PG  A+ G   +  PK G  V+VSAA+G VG  
Sbjct: 113 TPMTHAHFKIQ-HTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQL 171

Query: 181 AGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLD 240
            GQLAK+ GC VVGS GS + V LLK +FG+DDAFNY  E    AAL + FPNGID+Y +
Sbjct: 172 VGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFE 231

Query: 241 NVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH 300
           NVGGKML+AVL ++N+H RI +CGMISQYN     ++GV NL N+I K ++++GF++   
Sbjct: 232 NVGGKMLDAVLVNMNMHGRIAVCGMISQYN--LENQEGVHNLSNIIYKRIRIQGFVVSDF 289

Query: 301 MDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
            D+++ F   +  +I+EGKI     +  G+E   E+L  LF   N+GK V+ V
Sbjct: 290 YDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVV 342

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)H homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 4

>sp|Q6WAU0|PULR_MENPI (+)-pulegone reductase OS=Mentha piperita PE=1 SV=1

 Score =  234 bits (597), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 205/348 (58%), Gaps = 15/348 (4%)

Query: 11  VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG 70
           V +K+  ++ Y +  +  SD L LR++++ + I    +  + V+ L++S++PYL   M  
Sbjct: 2   VMNKQIVLNNYINGSLKQSD-LALRTSTICMEIPDGCNGAILVKNLYLSVNPYLILRM-- 58

Query: 71  TNDGLYFPQFN---LNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL--PCDL 125
               L  PQF+       I+++G+++V+ S    Y  G+++  +     EY+L+  P +L
Sbjct: 59  --GKLDIPQFDSILPGSTIVSYGVSKVLDSTHPSYEKGELIWGSQAGWEEYTLIQNPYNL 116

Query: 126 LTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
              +      +P   Y+  LG+PG  A+ G   +  PK G  VFV+AAAG VG   GQ A
Sbjct: 117 FKIQ---DKDVPLSYYVGILGMPGMTAYAGFFEICSPKKGETVFVTAAAGSVGQLVGQFA 173

Query: 186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
           K+ GC VVGS GS + V LLK +FG+DDAFNY  E  +D AL ++FP GID+Y DNVGGK
Sbjct: 174 KMFGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEESDYDTALKRHFPEGIDIYFDNVGGK 233

Query: 246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA 305
           MLEAV+N++ VH RI +CGM+SQY+    + +GV NLL +I K+++M+GF++  +   + 
Sbjct: 234 MLEAVINNMRVHGRIAVCGMVSQYS--LKQPEGVHNLLKLIPKQIRMQGFVVVDYYHLYP 291

Query: 306 DFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
            F   +   IKEGK+     I  G+ES   +L  ++   N+G  V+ V
Sbjct: 292 KFLEMVLPRIKEGKVTYVEDISEGLESAPSALLGVYVGRNVGNQVVAV 339

Monoterpene synthase that catalyzes the specific reduction of the 4,8-double bond of (+)-pulegone to produce both (-)-menthone and (+)-isomenthone in a 70:30 ratio. Unable to utilize either (-)-isopiperitenone or (+)-cis-isopulegone, or to catalyze the reverse reaction with (-)-menthone or (+)-isomenthone. Has an absolute requirement for NADPH.

Mentha piperita (taxid: 34256)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q39173|P2_ARATH NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2

 Score =  228 bits (582), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/331 (39%), Positives = 187/331 (56%), Gaps = 7/331 (2%)

Query: 25  GVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQ-FNLN 83
           G P        + +V L +       V V+ L++S DPY+R+ M   +      Q +   
Sbjct: 15  GFPKESDFNFTTTTVELRVPE-GSKSVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPG 73

Query: 84  QVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL-PCDLLTRKLDPASGIPFPDYL 142
           + I  +G++RVI S    Y  GD+ L   +   EYS++ P   +  K+   + +P   Y 
Sbjct: 74  KPIYGYGVSRVIESGHPDYKKGDL-LWGIVGWEEYSVITPMAHMHFKIQ-HTDVPLSYYT 131

Query: 143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
             LG+PG  A+ G   +  PK G  V+VSAA+G VG   GQ AK+ GC VVGS GS + V
Sbjct: 132 GLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKV 191

Query: 203 KLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIIL 262
            LLK +FG+DDAFNY  E    AAL + FP GID+Y +NVGGKML+AVL ++N H RI +
Sbjct: 192 DLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAV 251

Query: 263 CGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS 322
           CGMISQYN     ++GV NL N+I K ++++GF++    D++  F   +   IKEGKI  
Sbjct: 252 CGMISQYN--LENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITY 309

Query: 323 KHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
              +  G+E   E+L  LF   N+GK V+ +
Sbjct: 310 VEDVADGLEKAPEALVGLFHGKNVGKQVVVI 340

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro) (By similarity). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)h homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|O34812|YFMJ_BACSU Putative NADP-dependent oxidoreductase YfmJ OS=Bacillus subtilis (strain 168) GN=yfmJ PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 185/350 (52%), Gaps = 21/350 (6%)

Query: 13  SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTN 72
           S++    A    G+P  +  +  +    + +       V V+TL++S+DPY+R  M  T 
Sbjct: 4   SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQDTK 59

Query: 73  DGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVL-----RAFLPVAEYSLLPCDLLT 127
              Y   F L++ +    IA V+ S  +    GDIV+     + F  V+E +L       
Sbjct: 60  S--YVEPFALDKALSGGVIAEVV-SDGNHLKKGDIVIGNLSWQEFSAVSESAL------- 109

Query: 128 RKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKL 187
           RK+D  S  P   YL  LG+ G  A+ G+  +G+PK G  V VS AAG VG   GQ+AK+
Sbjct: 110 RKID-TSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKI 168

Query: 188 KGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKML 247
           KG +VVG  GSD+ +  LK+E  +D+A NY +      AL    P+G+DVY DNVGG + 
Sbjct: 169 KGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPIS 228

Query: 248 EAVLNHVNVHARIILCGMISQYNKVWTERD-GVRNLLNMIGKEVKMEGFMIGSHMDRFAD 306
           +AV+N +N  ARI +CG IS YN      D G R    +I  +  M+GF++  + DRF++
Sbjct: 229 DAVMNLLNEFARIPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSE 288

Query: 307 FTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKAP 356
              ++  ++K GK+  +  I  G E+  ++   LF   N GK +I+V  P
Sbjct: 289 GAKQLAEWLKAGKLHYEETITEGFENIPDAFLGLFKGENKGKQLIKVSDP 338

Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9C0Y6|YKM8_SCHPO Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.08c PE=3 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 177/307 (57%), Gaps = 10/307 (3%)

Query: 51  VAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDG-DIVL 109
           V ++ ++ S+DPYLR  M       Y P   L +      +A+V++S   +Y  G D+V 
Sbjct: 46  VLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVF 105

Query: 110 RAFLPVAEYSLLPCDLL--TRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN 167
            +     EY+ +    L   + ++    +P  D++ SLG+P   A+ G++ +G+PK+G  
Sbjct: 106 VSGW--EEYTFVSKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGET 163

Query: 168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAAL 227
           +++SAA+G VG  AGQLAK  G  VVGS GSD+  K+  +  GYD  FNY  E  F  AL
Sbjct: 164 IYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKESPFK-AL 221

Query: 228 TKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIG 287
            +  P GID+Y +NVGG+ ++AVL ++N+  RII CG ISQYN     R  V+NL  ++ 
Sbjct: 222 PRLCPKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAISQYNNPNPYR--VKNLGMVLV 279

Query: 288 KEVKMEGFMIGSHMDRFAD-FTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNI 346
           K + ++GF++ + + ++ + +  EM   I EGKI+ K  +Y G+ES  E+   +    N 
Sbjct: 280 KSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYKCDVYDGLESAPEAFIGMLQGKNS 339

Query: 347 GKVVIQV 353
           GK ++++
Sbjct: 340 GKTIVKI 346

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P76113|CURA_ECOLI NADPH-dependent curcumin reductase OS=Escherichia coli (strain K12) GN=curA PE=1 SV=3

 Score =  182 bits (462), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 190/358 (53%), Gaps = 22/358 (6%)

Query: 1   MGSAEEKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISI 60
           MG  +++     ++ W +++    G P  ++ +L    V+   +      V + T+++S+
Sbjct: 1   MGQQKQR-----NRRWVLASRPH-GAPVPENFRLEEDDVATPGEG----QVLLRTVYLSL 50

Query: 61  DPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSL 120
           DPY+R  M+  ++  Y P  ++  V++   ++RV+ S    Y  GD VL  +    +Y +
Sbjct: 51  DPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVL-GYSGWQDYDI 107

Query: 121 LPCDLLTRKLDPASGIPFPDY-LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGM 179
              D L +  D       P + L  LG+PGF A++G+  +GQPK G  + V+AA G VG 
Sbjct: 108 SSGDDLVKLGDHPQN---PSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGA 164

Query: 180 FAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYL 239
             GQ+ KLKGC+VVG  G  +  +   E  G+D   +++++  F   L K  P GID+Y 
Sbjct: 165 TVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHAD-DFAEQLAKACPKGIDIYY 223

Query: 240 DNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM---IGKEVKMEGFM 296
           +NVGGK+ +AVL  +N  ARI +CG++S YN         R  L M   + K ++++GF+
Sbjct: 224 ENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFI 283

Query: 297 IGS-HMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
           I   +  R  +F  EM  ++KE KI  +  I  G+E+  ++   L    N GKVVI+V
Sbjct: 284 IAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLENAPQTFIGLLKGKNFGKVVIRV 341

Catalyzes the metal-independent reduction of curcumin to dihydrocurcumin (DHC) as an intermediate product, followed by further reduction to tetrahydrocurcumin (THC) as an end product. It also acts on 3-octene-2-one, 3-hepten-2-one, resveratrol, and trans-2-octenal.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: n

EC: 3

>sp|Q5BK81|PTGR2_RAT Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2

 Score =  182 bits (461), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 181/341 (53%), Gaps = 11/341 (3%)

Query: 19  SAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFP 78
           S    +G P +++ ++   S+    D+I +  V V TL++S+DPY+R  M       Y  
Sbjct: 10  SRPGKNGNPVAENFRVEEVSLP---DTINEGQVRVRTLYLSVDPYMRCKMNEETGADYLA 66

Query: 79  QFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPF 138
            + L QV    G+  +  SK  K + GD V   + P    ++L  + L  K+DP      
Sbjct: 67  PWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGL-EKVDPQLVDGH 125

Query: 139 PDY-LSSLGIPGFAAWVGIEVLGQPKSGSN--VFVSAAAGGVGMFAGQLAKLKGC-KVVG 194
             Y L ++G+PG  + +G++  G   +GSN  + VS AAG  G  AGQ+  L GC +VVG
Sbjct: 126 LSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVG 185

Query: 195 STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHV 254
             G+ +    L  E G+D A NY +  +    L +  P+G+DVY DNVGG +  AV++ +
Sbjct: 186 ICGTHEKCLFLTSELGFDAAVNYKTG-NVAEQLREACPDGVDVYFDNVGGDISNAVISQM 244

Query: 255 NVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE--VKMEGFMIGSHMDRFADFTVEME 312
           N ++ IILCG ISQYNK       +   +  I KE  +  E FM+ ++ DRF    +++ 
Sbjct: 245 NQNSHIILCGQISQYNKDVPYPPPLPPAVEAIQKERNITRERFMVLNYKDRFEPGILQLS 304

Query: 313 SYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
            + KEGK++ K  +  G+E+   +  S+ +  NIGK ++++
Sbjct: 305 QWFKEGKLKIKETVANGLENMGVAFQSMMTGGNIGKQIVRI 345

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-keto-PGE1, 15-keto-PGE2, 15-keto-PGE1-alpha and 15-keto-PGE2-alpha with highest activity towards 15-keto-PGE2. Overexpression represses transcriptional activity of PPARG and inhibits adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q32L99|PTGR2_BOVIN Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 181/341 (53%), Gaps = 11/341 (3%)

Query: 19  SAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFP 78
           S    +G P +++ ++   ++    D + +  V V TL++S+DPY+R  M       Y  
Sbjct: 10  SRPGKNGHPVAENFRVEEVNLP---DCVNEGQVQVRTLYLSVDPYMRCRMNEDTGSDYIT 66

Query: 79  QFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPF 138
            + L+QV+   G+  +  SK + +  GD V   + P     +L  ++L  K+DP      
Sbjct: 67  PWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNIL-EKVDPQLVDGH 125

Query: 139 PDY-LSSLGIPGFAAWVGIEVLGQPKSGSN--VFVSAAAGGVGMFAGQLAKLKGC-KVVG 194
             Y L ++G+PG  + +G++  G   +GSN  + VS AAG  G  AGQ+ +L GC +VVG
Sbjct: 126 LSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVG 185

Query: 195 STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHV 254
             G+ +    L  E G+D A NY  E +    L K  P G+DVY DNVGG + + V++ +
Sbjct: 186 ICGTPEKCLFLTSELGFDAAINY-KEGNVAEQLHKLCPAGVDVYFDNVGGDISDTVISQM 244

Query: 255 NVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE--VKMEGFMIGSHMDRFADFTVEME 312
           N ++ IILCG ISQYNK       +   +  I KE  +  E F++ ++ D+F    +++ 
Sbjct: 245 NQNSHIILCGQISQYNKDVPYPPPLPPAIEAIQKERNITRERFLVLNYKDKFEFGILQLS 304

Query: 313 SYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
            + KEGK++ K  +  G+E+   +  S+ +  NIGK ++ +
Sbjct: 305 QWFKEGKLKIKETMINGLENMGAAFQSMMTGGNIGKQIVCI 345

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-keto-PGE1, 15-keto-PGE2, 15-keto-PGE1-alpha and 15-keto-PGE2-alpha with highest activity towards 15-keto-PGE2. Overexpression represses transcriptional activity of PPARG and inhibits adipocyte differentiation.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q91YR9|PTGR1_MOUSE Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2

 Score =  178 bits (452), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 182/344 (52%), Gaps = 19/344 (5%)

Query: 11  VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG 70
           V++K W +  +  +G PT  + +L++      +  + +  V +E L++S+DPY+R     
Sbjct: 2   VQAKSWTLKKH-FEGFPTDGNFELKTTE----LPPLNNGEVLLEALFLSVDPYMRVAAKK 56

Query: 71  TNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTR-K 129
             +G           ++   +ARV+ SK+S +  G IV  A L    +S+   + LT+  
Sbjct: 57  LKEG---------DRMMGEQVARVVESKNSAFPKGTIV-AALLGWTSHSISDGNGLTKLP 106

Query: 130 LDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG 189
           ++    +P    L ++G+PG  A+ G+  +   K G  V VSAAAG VG   GQ+AKLKG
Sbjct: 107 VEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKG 166

Query: 190 CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEA 249
           CKVVG+ GSD+ V  LK + G+D AFNY +  S + AL    P+G D Y DNVGG+   A
Sbjct: 167 CKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNA 225

Query: 250 VLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTV 309
           V+  +    RI +CG ISQYN+      G    + +I ++++MEGF++           +
Sbjct: 226 VILQMKTFGRIAICGAISQYNRTGPCPQGPAPEV-VIYQQLRMEGFIVNRWQGEVRQKAL 284

Query: 310 -EMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ 352
            E+ +++ EGK++    +  G E    +   +    N+GK +++
Sbjct: 285 TELMNWVSEGKVQCHEYVTEGFEKMPAAFMGMLKGENLGKTIVK 328

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q5R806|PTGR2_PONAB Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 180/341 (52%), Gaps = 11/341 (3%)

Query: 19  SAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFP 78
           S    +G P +++ ++    +    D+I +  V V TL++S+DPY+R  M       Y  
Sbjct: 10  SRPGKNGNPVAENFRMEEVYLP---DNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYIT 66

Query: 79  QFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPF 138
            + L+QV+   GI  +  SK +  + GD V   + P     +L  + L  K+DP      
Sbjct: 67  PWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSL-EKVDPQLVDGH 125

Query: 139 PDY-LSSLGIPGFAAWVGIEVLGQPKSGSN--VFVSAAAGGVGMFAGQLAKLKGC-KVVG 194
             Y L ++G+PG  + +GI+  G   +GSN  + VS AAG  G  AGQ+  L GC +VVG
Sbjct: 126 LSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVG 185

Query: 195 STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHV 254
             G+ +   LL  E G+D A NY  + +    L +  P G+DVY DNVGG + + V++ +
Sbjct: 186 ICGTHEKCVLLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQM 244

Query: 255 NVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE--VKMEGFMIGSHMDRFADFTVEME 312
           N ++ IILCG ISQYNK       +   +  I KE  +  E F++ ++ D+F    +++ 
Sbjct: 245 NENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYRDKFEPGILQLS 304

Query: 313 SYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
            + KEGK++ K  +  G+E+   +  S+ +  NIGK ++ +
Sbjct: 305 QWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCI 345

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-keto-PGE1, 15-keto-PGE2, 15-keto-PGE1-alpha and 15-keto-PGE2-alpha with highest activity towards 15-keto-PGE2. Overexpression represses transcriptional activity of PPARG and inhibits adipocyte differentiation.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
225447019	361	PREDICTED: (+)-pulegone reductase [Vitis	0.977	0.963	0.733	1e-152
147800900	463	hypothetical protein VITISV_036384 [Viti	0.966	0.742	0.724	1e-149
388503288	350	unknown [Lotus japonicus]	0.969	0.985	0.704	1e-146
297739154	361	unnamed protein product [Vitis vinifera]	0.977	0.963	0.699	1e-145
357453389	350	hypothetical protein MTR_2g088190 [Medic	0.974	0.991	0.692	1e-143
356543702	350	PREDICTED: (+)-pulegone reductase-like [	0.966	0.982	0.697	1e-142
147867146	417	hypothetical protein VITISV_034510 [Viti	0.963	0.822	0.691	1e-142
357453395	350	hypothetical protein MTR_2g088220 [Medic	0.974	0.991	0.703	1e-141
359485608	394	PREDICTED: NADP-dependent alkenal double	0.983	0.888	0.635	1e-139
356550024	364	PREDICTED: NADP-dependent alkenal double	0.957	0.936	0.674	1e-138

>gi|225447019|ref|XP_002268886.1| PREDICTED: (+)-pulegone reductase [Vitis vinifera] gi|297739152|emb|CBI28803.3| unnamed protein product [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/349 (73%), Positives = 299/349 (85%), Gaps = 1/349 (0%)

Query: 6   EKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLR 65
           E    VES+EW +SAYA++GVPTSDHLKLR+  +SL  +SIPD HVAVE LWIS+DPYLR
Sbjct: 13  ENSTVVESREWVMSAYAAEGVPTSDHLKLRTTKLSLDANSIPDGHVAVELLWISVDPYLR 72

Query: 66  ATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDL 125
             MTG +DGLYF QF LN+VI AFG+ RV  SK+ K+S GDIV+  F P AEY + P   
Sbjct: 73  TRMTGHDDGLYFSQFALNEVITAFGVGRVFLSKNGKFSTGDIVINPFFPFAEYCIAPPTF 132

Query: 126 LTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
           L R +DP +GI  P YLSSLG+PGFAAWVGIEVLG PK GSNVF+SAAAGGVG+FAGQLA
Sbjct: 133 L-RVIDPTAGIELPAYLSSLGVPGFAAWVGIEVLGNPKPGSNVFISAAAGGVGIFAGQLA 191

Query: 186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
           KLKGC+VVGSTG+D+ VKLLKEEFGYD+AFNYN E  FDAAL KYFPNGID+YLDNVGGK
Sbjct: 192 KLKGCRVVGSTGTDEKVKLLKEEFGYDEAFNYNKETDFDAALRKYFPNGIDLYLDNVGGK 251

Query: 246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA 305
           MLEAVLNHVN+HARI +CGMISQYN++WTER+GVRNLLNM+GKEV+MEG+++GS++DRF 
Sbjct: 252 MLEAVLNHVNLHARIPICGMISQYNQIWTEREGVRNLLNMVGKEVRMEGYLVGSYLDRFD 311

Query: 306 DFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK 354
           DFT EME+Y KEGK+RSKH IY G+ESF+ESLGS+F+SSNIGKVVIQVK
Sbjct: 312 DFTKEMETYTKEGKLRSKHKIYCGIESFIESLGSMFTSSNIGKVVIQVK 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800900|emb|CAN60126.1| hypothetical protein VITISV_036384 [Vitis vinifera]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/345 (72%), Positives = 293/345 (84%), Gaps = 1/345 (0%)

Query: 6   EKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLR 65
           E    VES+EW +SAYA++GVPTSDHLKLR+  +SL  +SIPD HVAVE LWIS+DPYLR
Sbjct: 13  ENSTVVESREWVMSAYAAEGVPTSDHLKLRTTKLSLDANSIPDGHVAVELLWISVDPYLR 72

Query: 66  ATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDL 125
             MTG +DGLYF QF LN+VI AFG+ RV  SK+ K+S GDIV   F P AEY + P   
Sbjct: 73  TRMTGHDDGLYFSQFALNEVITAFGVGRVXXSKNGKFSTGDIVXNPFFPFAEYCIAPPTF 132

Query: 126 LTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
           L R +DP +GI  P YLSSLG+PGFAAWVGIEVLG PK GSNVF+SAAAGGVG+FAGQLA
Sbjct: 133 L-RVIDPTAGIELPAYLSSLGVPGFAAWVGIEVLGNPKPGSNVFISAAAGGVGIFAGQLA 191

Query: 186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
           KLKGC+VVGSTG+D+ VKLLKEEFGYD+AF YN E  FDAAL KYFPNGID+YLDNVGGK
Sbjct: 192 KLKGCRVVGSTGTDEKVKLLKEEFGYDEAFXYNKETDFDAALXKYFPNGIDLYLDNVGGK 251

Query: 246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA 305
           MLEAVLNHVN+HARI +CGMISQYN++WTER+GVRNLLNM+GKEV+MEG+++GS++DRF 
Sbjct: 252 MLEAVLNHVNLHARIPICGMISQYNQIWTEREGVRNLLNMVGKEVRMEGYLVGSYLDRFD 311

Query: 306 DFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVV 350
           DFT EME+Y KEGK+RSKH IY G+ESF+ESLGS+F+SSNIGKV+
Sbjct: 312 DFTKEMETYTKEGKLRSKHKIYCGIESFIESLGSMFTSSNIGKVI 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503288|gb|AFK39710.1| unknown [Lotus japonicus]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 243/345 (70%), Positives = 298/345 (86%)

Query: 11  VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG 70
           VES+EW+++AY++DGVPTS+HLKLR+ +++LA DSIPD HVA ETL+IS+DPY+R  +TG
Sbjct: 6   VESREWFLAAYSTDGVPTSEHLKLRTVTLTLASDSIPDGHVAAETLFISVDPYIRTKLTG 65

Query: 71  TNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKL 130
           T DGL  PQ+++NQVI +F ++RVIRSKDSKY +GD+VL    PVAEYS++P   + RK+
Sbjct: 66  TPDGLNLPQYHINQVITSFSVSRVIRSKDSKYVEGDLVLVPSAPVAEYSIIPSSGILRKI 125

Query: 131 DPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC 190
           D  SGI  PDYLSSLG+PGFAAWVGIE+LG+PK GSNVF+SAA+G VGM AGQL K+KGC
Sbjct: 126 DGESGISLPDYLSSLGVPGFAAWVGIELLGEPKVGSNVFISAASGAVGMVAGQLVKIKGC 185

Query: 191 KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAV 250
           KV+GSTGSD+ VKL+K EFGYDD FNYN E  FDAAL++YFP+GIDVYLDNVGG+MLEAV
Sbjct: 186 KVIGSTGSDEKVKLIKGEFGYDDGFNYNKESDFDAALSRYFPDGIDVYLDNVGGEMLEAV 245

Query: 251 LNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVE 310
           LNHVN +ARI LCGMISQYNKVWTER+GVRNLLNMIGKEV+MEGFM+ ++  RF DF  +
Sbjct: 246 LNHVNKYARIPLCGMISQYNKVWTEREGVRNLLNMIGKEVRMEGFMLATYWHRFGDFAQD 305

Query: 311 MESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA 355
           ME YIKEGK++SK+ I  G+ESFL+SL SLF+SSNIGKV++QVKA
Sbjct: 306 MEGYIKEGKVKSKNKINIGIESFLDSLSSLFTSSNIGKVIVQVKA 350

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739154|emb|CBI28805.3| unnamed protein product [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/349 (69%), Positives = 291/349 (83%), Gaps = 1/349 (0%)

Query: 6   EKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLR 65
           E L  VES+EW + AYA+ G+PTSDHLKLR+  +SL  DSIP  HVAVE LW+S+DPYLR
Sbjct: 13  ENLTMVESREWVMVAYAAKGIPTSDHLKLRTTKLSLDADSIPKDHVAVELLWVSVDPYLR 72

Query: 66  ATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDL 125
             M+G ++GLYF QF L++VI   GI RVIRSK SK+S GD+V  +F P +EY ++    
Sbjct: 73  GRMSGQDEGLYFSQFALDEVITTCGIGRVIRSKSSKFSKGDLVSTSFFPFSEYFIIEATS 132

Query: 126 LTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
           L + +D  +GI    YLS+LG+PGFAAWV IEV+G PKSGSNVF+SAAAGGVGMFAGQLA
Sbjct: 133 L-QVVDQTAGIEISTYLSALGVPGFAAWVAIEVIGNPKSGSNVFISAAAGGVGMFAGQLA 191

Query: 186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
           K KGC+VVGSTG+D+ VKLLKEEFGYD+AFNYN E  FDAAL+KYFPNGID+YLDNVGGK
Sbjct: 192 KFKGCRVVGSTGTDEKVKLLKEEFGYDEAFNYNKEADFDAALSKYFPNGIDLYLDNVGGK 251

Query: 246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA 305
           MLEAVLNHVN  ARI + GMISQYN+VWTER+GVRNLLN++GKEV++EG+++GSHMDRF 
Sbjct: 252 MLEAVLNHVNARARIAVSGMISQYNQVWTEREGVRNLLNIVGKEVRIEGYLMGSHMDRFD 311

Query: 306 DFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK 354
           DFT  M +Y KEGK+RSKH IYYG+ESF+ESLGS+FSSSNIGKVVIQVK
Sbjct: 312 DFTKAMVTYTKEGKLRSKHKIYYGIESFIESLGSIFSSSNIGKVVIQVK 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453389|ref|XP_003596971.1| hypothetical protein MTR_2g088190 [Medicago truncatula] gi|355486019|gb|AES67222.1| hypothetical protein MTR_2g088190 [Medicago truncatula]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/348 (69%), Positives = 296/348 (85%), Gaps = 1/348 (0%)

Query: 9   ETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATM 68
           + VE+KEWY++AY+ +GVPTSDHLKLR+ S+SLA +SIPD H+ VETL +S+DPYLR T+
Sbjct: 3   DLVENKEWYVAAYSPEGVPTSDHLKLRTVSLSLAHESIPDDHLIVETLLLSVDPYLRGTI 62

Query: 69  TGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTR 128
           TGT +GL+ PQ+ LNQV+  F + RVIRSKDSKYS+GDI+L  +  VAEYS++P   + R
Sbjct: 63  TGTLEGLFIPQYQLNQVLTTFAVVRVIRSKDSKYSEGDILLNGYGLVAEYSIVPSSHIIR 122

Query: 129 KLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK 188
           K+DPA+GI   DYL SLG+PGFAAW+GIEVLG PK  SNVF+SAA+G VGM AGQLAK++
Sbjct: 123 KIDPANGISLSDYLGSLGVPGFAAWLGIEVLGNPKPASNVFISAASGAVGMIAGQLAKIR 182

Query: 189 GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTK-YFPNGIDVYLDNVGGKML 247
           GC+V+GSTGSDD VKL+KE+FGYDD FNYN E  FDAAL+K YFP+GIDVYLDNVGGKML
Sbjct: 183 GCRVIGSTGSDDKVKLIKEKFGYDDGFNYNIESDFDAALSKSYFPDGIDVYLDNVGGKML 242

Query: 248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADF 307
           E+VLNHVN +ARI LCGMISQYNKVWTER+G+RNLLNM+GKEV+MEGFMI S++ RF DF
Sbjct: 243 ESVLNHVNKNARIPLCGMISQYNKVWTEREGIRNLLNMVGKEVRMEGFMIKSYLHRFGDF 302

Query: 308 TVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA 355
             +ME Y++EGKI+ K  I  G+E+FLESL S+FS+SNIGKVV+QVKA
Sbjct: 303 VKDMEKYLQEGKIKPKSKINIGIENFLESLNSVFSNSNIGKVVVQVKA 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543702|ref|XP_003540299.1| PREDICTED: (+)-pulegone reductase-like [Glycine max]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/344 (69%), Positives = 291/344 (84%)

Query: 10  TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMT 69
            VES+EWY++AY+  GVP SD+LKLR+ ++SL+ DSIPD HV+++ L++S+DPYLR  +T
Sbjct: 4   VVESREWYLAAYSPHGVPNSDNLKLRTVALSLSSDSIPDGHVSLQILFLSVDPYLRTRLT 63

Query: 70  GTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRK 129
           GT DGLY  Q+ LN+VI A+G+ RVI SKDSKY++GD++L    PVAEY +LP   + RK
Sbjct: 64  GTLDGLYIQQYPLNEVITAYGVGRVIGSKDSKYTEGDLILTPSAPVAEYCILPSSRVIRK 123

Query: 130 LDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG 189
           +D ASGI  PDYLS+LG+PGFAAWVGI VLG PK GSNVF+SAA+G VGM AGQLAK++G
Sbjct: 124 IDAASGISLPDYLSALGVPGFAAWVGIVVLGDPKPGSNVFISAASGAVGMSAGQLAKIRG 183

Query: 190 CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEA 249
           C+V+GSTGSD+ VKL+KEEFGYDD FNYN E  FDAAL+KYFP+GIDVYLDNVGGKMLE+
Sbjct: 184 CRVIGSTGSDEKVKLIKEEFGYDDGFNYNKESDFDAALSKYFPDGIDVYLDNVGGKMLES 243

Query: 250 VLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTV 309
           VLNHVN +ARI LCGMISQYNKVWTER+GVRNLLNM+GKEV+MEGFM+ S+  RF DF  
Sbjct: 244 VLNHVNKYARIPLCGMISQYNKVWTEREGVRNLLNMVGKEVRMEGFMLESYWHRFEDFAK 303

Query: 310 EMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
           EME YIKEGK+ SK+ I  G+ESFL+SL SLFSSSNIGKVV+QV
Sbjct: 304 EMEGYIKEGKVTSKNKINIGIESFLDSLASLFSSSNIGKVVVQV 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147867146|emb|CAN78402.1| hypothetical protein VITISV_034510 [Vitis vinifera]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 238/344 (69%), Positives = 286/344 (83%), Gaps = 1/344 (0%)

Query: 6   EKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLR 65
           E L  VES+EW + AYA+ G+PTSDHLKLR+  +SL  DSIP  HVAVE LW+S+DPYLR
Sbjct: 13  ENLTMVESREWVMVAYAAKGIPTSDHLKLRTTKLSLDADSIPKDHVAVELLWVSVDPYLR 72

Query: 66  ATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDL 125
             M+G ++GLYF QF L++VI   GI RVIRSK SK+S GD+V  +F P +EY ++    
Sbjct: 73  GRMSGQDEGLYFSQFALDEVITTCGIGRVIRSKSSKFSKGDLVSTSFFPFSEYFIIEATS 132

Query: 126 LTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
           L + +D  +GI    YLS+LG+PGFAAWV IEV+G PKSGSNVF+SAAAGGVGMFAGQLA
Sbjct: 133 L-QVVDQTAGIEXSTYLSALGVPGFAAWVAIEVIGNPKSGSNVFISAAAGGVGMFAGQLA 191

Query: 186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
           K KGC+VVGSTG+D+ VKLLKEEFGYD+AFNYN E  FDAAL+KYFPNGID+YLDNVGGK
Sbjct: 192 KFKGCRVVGSTGTDEKVKLLKEEFGYDEAFNYNKEADFDAALSKYFPNGIDLYLDNVGGK 251

Query: 246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA 305
           MLEAVLNHVN  ARI + GMISQYN+VWTER+GVRNLLN++GKEV++EG+++GSHMDRF 
Sbjct: 252 MLEAVLNHVNARARIAVSGMISQYNQVWTEREGVRNLLNIVGKEVRIEGYLMGSHMDRFD 311

Query: 306 DFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKV 349
           DFT  M +Y KEGK+RSKH IYYG+ESF+ESLGS+FSSSNIGK+
Sbjct: 312 DFTKAMVTYTKEGKLRSKHKIYYGIESFIESLGSIFSSSNIGKL 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453395|ref|XP_003596974.1| hypothetical protein MTR_2g088220 [Medicago truncatula] gi|355486022|gb|AES67225.1| hypothetical protein MTR_2g088220 [Medicago truncatula]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/347 (70%), Positives = 296/347 (85%)

Query: 9   ETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATM 68
           E VES+EWY++ Y+++GVPTSDHLKLR+ S+SLA DSIPD+H+AVETL +S+DPYLR  +
Sbjct: 4   EVVESREWYLAGYSTEGVPTSDHLKLRTVSLSLADDSIPDNHLAVETLLLSVDPYLRGRI 63

Query: 69  TGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTR 128
           TGT++GL+  Q+ LNQVI  F + RVIRSKDSKYS+GDI+L    PVAEYS++P   +TR
Sbjct: 64  TGTSEGLFISQYQLNQVITVFAVVRVIRSKDSKYSEGDILLNPNAPVAEYSIVPSSQITR 123

Query: 129 KLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK 188
           K+D ++GI   DYL SLG+PGFAAWVGIEVL  PK GSNVF+SAA+G VG+ AGQLAK++
Sbjct: 124 KIDTSNGISLSDYLGSLGVPGFAAWVGIEVLADPKPGSNVFISAASGAVGINAGQLAKIR 183

Query: 189 GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLE 248
           GC+V+GSTGSDD VKL+KEEFGYDD FNYN E  FDAAL+KYFP+GIDVY DNVGG+MLE
Sbjct: 184 GCRVIGSTGSDDKVKLIKEEFGYDDGFNYNKESDFDAALSKYFPDGIDVYFDNVGGEMLE 243

Query: 249 AVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFT 308
           AVLNHVN HARI LCGMISQYNKVWTER+GVRNLLNM+GK+V+MEGFM+ S+  RF DF 
Sbjct: 244 AVLNHVNKHARIPLCGMISQYNKVWTEREGVRNLLNMVGKQVRMEGFMLESYWHRFGDFA 303

Query: 309 VEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA 355
            +ME Y++EGK++SK+ I  G+E FLESL SLFSSSNIGKVV+QVKA
Sbjct: 304 KDMEKYLQEGKVKSKNKINIGIEGFLESLNSLFSSSNIGKVVVQVKA 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485608|ref|XP_002268921.2| PREDICTED: NADP-dependent alkenal double bond reductase P1-like [Vitis vinifera]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/384 (63%), Positives = 291/384 (75%), Gaps = 34/384 (8%)

Query: 4   AEEKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPY 63
             E L  VES+EW + AYA+ G+PTSDHLKLR+  +SL  DSIP  HVAVE LW+S+DPY
Sbjct: 11  GHENLTMVESREWVMVAYAAKGIPTSDHLKLRTTKLSLDADSIPKDHVAVELLWVSVDPY 70

Query: 64  LRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPC 123
           LR  M+G ++GLYF QF L++VI   GI RVIRSK SK+S GD+V  +F P +EY ++  
Sbjct: 71  LRGRMSGQDEGLYFSQFALDEVITTCGIGRVIRSKSSKFSKGDLVSTSFFPFSEYFIIEA 130

Query: 124 DLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQ 183
             L + +D  +GI    YLS+LG+PGFAAWV IEV+G PKSGSNVF+SAAAGGVGMFAGQ
Sbjct: 131 TSL-QVVDQTAGIEISTYLSALGVPGFAAWVAIEVIGNPKSGSNVFISAAAGGVGMFAGQ 189

Query: 184 LAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG 243
           LAK KGC+VVGSTG+D+ VKLLKEEFGYD+AFNYN E  FDAAL+KYFPNGID+YLDNVG
Sbjct: 190 LAKFKGCRVVGSTGTDEKVKLLKEEFGYDEAFNYNKEADFDAALSKYFPNGIDLYLDNVG 249

Query: 244 GKMLEAVLNHVNVHARIILCGMISQYNKV------------------------------- 272
           GKMLEAVLNHVN  ARI + GMISQYN+V                               
Sbjct: 250 GKMLEAVLNHVNARARIAVSGMISQYNQVHHLLKLNTTWPGIYLLPVFLVGFLLLINHFM 309

Query: 273 --WTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGV 330
             WTER+GVRNLLN++GKEV++EG+++GSHMDRF DFT  M +Y KEGK+RSKH IYYG+
Sbjct: 310 QVWTEREGVRNLLNIVGKEVRIEGYLMGSHMDRFDDFTKAMVTYTKEGKLRSKHKIYYGI 369

Query: 331 ESFLESLGSLFSSSNIGKVVIQVK 354
           ESF+ESLGS+FSSSNIGKVVIQVK
Sbjct: 370 ESFIESLGSIFSSSNIGKVVIQVK 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550024|ref|XP_003543390.1| PREDICTED: NADP-dependent alkenal double bond reductase P1-like [Glycine max]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/341 (67%), Positives = 278/341 (81%)

Query: 13  SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTN 72
           SKEWY+ +YA  GVPT+DHLKLR   +S+A +SIPD HVA+E L  SIDPYLR  + GT 
Sbjct: 21  SKEWYLVSYAPHGVPTTDHLKLRKVRLSIAPESIPDGHVAIEMLLFSIDPYLRGRLNGTL 80

Query: 73  DGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDP 132
           DGLYFPQF LNQVI  +GI RV RS DS+Y +GDIVL A  P AEY ++P   + RK+D 
Sbjct: 81  DGLYFPQFELNQVITIYGIGRVKRSNDSEYKEGDIVLSANFPAAEYCVMPSCEIVRKIDA 140

Query: 133 ASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKV 192
           A GI  PDYLS+LG+PGFAAW+GIEVL  PK GSNVF+SAA+GGVGM AGQLAK++ C+V
Sbjct: 141 ACGISLPDYLSTLGVPGFAAWLGIEVLADPKPGSNVFISAASGGVGMIAGQLAKIRDCRV 200

Query: 193 VGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLN 252
           +GSTGSD+ V+L+KEEFGYDD FNY +E   DA L+K+FPNGIDVY DNVGGKMLE+VLN
Sbjct: 201 IGSTGSDEKVRLIKEEFGYDDGFNYKNEEDLDAVLSKFFPNGIDVYFDNVGGKMLESVLN 260

Query: 253 HVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEME 312
           HVN +ARI LCGMISQYN+ WTER+GVRNLLNM+GKEV+MEGF++ +H DRF +F  EME
Sbjct: 261 HVNRYARIPLCGMISQYNQAWTEREGVRNLLNMVGKEVRMEGFLLNTHFDRFGEFAKEME 320

Query: 313 SYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
            +IKEG+++ K  I  G+ESFL+SL SLFSS+NIGKVV+QV
Sbjct: 321 GHIKEGRLKPKTKINIGIESFLDSLNSLFSSTNIGKVVVQV 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2034109	350	AT1G65560 [Arabidopsis thalian	0.960	0.977	0.405	9e-61
TAIR|locus:2097795	350	AT3G03080 [Arabidopsis thalian	0.949	0.965	0.384	5.1e-58
UNIPROTKB|Q6WAU0	342	Q6WAU0 "(+)-pulegone reductase	0.943	0.982	0.373	1.4e-57
TAIR|locus:2148131	345	AER "alkenal reductase" [Arabi	0.946	0.976	0.385	1.4e-57
TAIR|locus:2028736	351	AT1G26320 [Arabidopsis thalian	0.949	0.962	0.383	7.5e-57
TAIR|locus:2148186	345	AT5G17000 [Arabidopsis thalian	0.946	0.976	0.373	1.6e-54
TAIR|locus:2148166	343	AT5G16990 [Arabidopsis thalian	0.910	0.944	0.380	2.1e-54
TAIR|locus:2153759	353	AT5G37980 [Arabidopsis thalian	0.949	0.957	0.367	1e-52
TAIR|locus:2153799	353	AT5G37940 [Arabidopsis thalian	0.949	0.957	0.362	4.4e-52
UNIPROTKB|G4MW05	348	MGG_11308 "Zinc-binding alcoho	0.915	0.936	0.353	7.2e-52

TAIR|locus:2034109 AT1G65560 [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 142/350 (40%), Positives = 194/350 (55%)

Query:     7 KLETVESKEWYISAYASDGVPTSDHLKLR-SASVSLAIDSIPDHHVAVETLWISIDPYLR 65
             ++  VE+K+  +  Y  DG+PT   ++++   ++ L         + V+ L++S DPY+R
Sbjct:     3 EVSVVENKKVILKNYV-DGIPTETDMEVKLGETIELKAPKGSSCFL-VKNLYLSCDPYMR 60

Query:    66 ATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPC-- 123
               M   + G Y P F   Q I  FG+ARVI S D+ Y  GDIV    +   EYSLL    
Sbjct:    61 GRMRDFH-GSYLPPFVPGQRIEGFGLARVIDSDDTNYKPGDIV-SGIIGWEEYSLLRSSD 118

Query:   124 DLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQ 183
             +L  R +     IP   +L  LG+ GF A+ G   +  PK G +VFVSAA G VG   GQ
Sbjct:   119 NLQLRNIQLDDDIPLSYHLGLLGMAGFTAYAGFNEICCPKKGDSVFVSAACGAVGQLVGQ 178

Query:   184 LAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG 243
             LAKL GC VVGS GS   V++LK E GYD+AFNY  E   D AL +YFP GID+Y DNVG
Sbjct:   179 LAKLHGCYVVGSAGSKQKVEILKNELGYDEAFNYKEEADLDTALKRYFPEGIDIYFDNVG 238

Query:   244 GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDR 303
             G ML+A L ++ V  RI LCGM+S    + T   G++NL + I K +++EGF+   ++  
Sbjct:   239 GSMLDAALLNMKVRGRIALCGMVS-LQSLSTSSQGIKNLYSAIYKRLRLEGFLQSDYLHI 297

Query:   304 FADFTVEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
             F  F   ++ Y KEGKI     I  G+              NIGK V++V
Sbjct:   298 FPQFLENVKRYYKEGKIVYVEDISEGLDLAPAALVGLFSGKNIGKQVVRV 347

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2097795 AT3G03080 [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 133/346 (38%), Positives = 192/346 (55%)

Query:    10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMT 69
             TV +K+  +  Y + G P    L    +++ L I       V V+ L++S DPY+R  M 
Sbjct:     8 TVANKQVILRDYVT-GFPKESDLIFTDSTIDLKIPE-GSKTVLVKNLYLSCDPYMRIRMG 65

Query:    70 GTNDGL--YFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLT 127
               + G     P +   + I  F +++VI S    Y  GD+ L   +   EYSL+  D   
Sbjct:    66 KPDPGTAALAPHYIPGEPIYGFSVSKVIDSGHPDYKKGDL-LWGLVGWGEYSLITPDFSH 124

Query:   128 RKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKL 187
              K+     +P   Y   LG+PG  A+ G   +  PK G  VFVSAA+G VG   GQ AK+
Sbjct:   125 YKIQHTD-VPLSYYTGLLGMPGMTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKI 183

Query:   188 KGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKML 247
              GC VVGS GS++ V LLK +FG+DDAFNY +E   +AAL + FP GID+Y +NVGGKML
Sbjct:   184 MGCYVVGSAGSNEKVDLLKNKFGFDDAFNYKAEPDLNAALKRCFPEGIDIYFENVGGKML 243

Query:   248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADF 307
             +AVL ++ +H RI +CGMISQYN    +++GV NL N+I K ++++GF++  + D+   F
Sbjct:   244 DAVLLNMKLHGRIAVCGMISQYNL--EDQEGVHNLANVIYKRIRIKGFVVSDYFDKHLKF 301

Query:   308 TVEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
                +  YI+EGKI     +  G+              N+GK +I V
Sbjct:   302 LDFVLPYIREGKITYVEDVVEGLENGPSALLGLFHGKNVGKQLIAV 347

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

UNIPROTKB|Q6WAU0 Q6WAU0 "(+)-pulegone reductase" [Mentha x piperita (taxid:34256)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 129/345 (37%), Positives = 198/345 (57%)

Query:    11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG 70
             V +K+  ++ Y +  +  SD L LR++++ + I    +  + V+ L++S++PYL   M G
Sbjct:     2 VMNKQIVLNNYINGSLKQSD-LALRTSTICMEIPDGCNGAILVKNLYLSVNPYLILRM-G 59

Query:    71 TNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL--PCDLLTR 128
               D   F        I+++G+++V+ S    Y  G+++  +     EY+L+  P +L   
Sbjct:    60 KLDIPQFDSILPGSTIVSYGVSKVLDSTHPSYEKGELIWGSQAGWEEYTLIQNPYNLF-- 117

Query:   129 KLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK 188
             K+     +P   Y+  LG+PG  A+ G   +  PK G  VFV+AAAG VG   GQ AK+ 
Sbjct:   118 KIQDKD-VPLSYYVGILGMPGMTAYAGFFEICSPKKGETVFVTAAAGSVGQLVGQFAKMF 176

Query:   189 GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLE 248
             GC VVGS GS + V LLK +FG+DDAFNY  E  +D AL ++FP GID+Y DNVGGKMLE
Sbjct:   177 GCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEESDYDTALKRHFPEGIDIYFDNVGGKMLE 236

Query:   249 AVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFT 308
             AV+N++ VH RI +CGM+SQY+    + +GV NLL +I K+++M+GF++  +   +  F 
Sbjct:   237 AVINNMRVHGRIAVCGMVSQYSL--KQPEGVHNLLKLIPKQIRMQGFVVVDYYHLYPKFL 294

Query:   309 VEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
               +   IKEGK+     I  G+              N+G  V+ V
Sbjct:   295 EMVLPRIKEGKVTYVEDISEGLESAPSALLGVYVGRNVGNQVVAV 339

GO:0042214 "terpene metabolic process" evidence=IDA

GO:0052579 "(+)-pulegone reductase, (+)-isomenthone as substrate, activity" evidence=IDA

GO:0052580 "(+)-pulegone reductase, (-)-menthone as substrate, activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

TAIR|locus:2148131 AER "alkenal reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 134/348 (38%), Positives = 192/348 (55%)

Query:    10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMT 69
             T  +K+  +  Y S G PT       + +V L +     + V V+ L++S DPY+R  M 
Sbjct:     2 TATNKQVILKDYVS-GFPTESDFDFTTTTVELRVPE-GTNSVLVKNLYLSCDPYMRIRM- 58

Query:    70 GTND---GLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL-PCDL 125
             G  D         +   Q I  +G++R+I S    Y  GD+ L   +   EYS++ P   
Sbjct:    59 GKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDL-LWGIVAWEEYSVITPMTH 117

Query:   126 LTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
                K+     +P   Y   LG+PG  A+ G   +  PK G  V+VSAA+G VG   GQLA
Sbjct:   118 AHFKIQHTD-VPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLA 176

Query:   186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
             K+ GC VVGS GS + V LLK +FG+DDAFNY  E    AAL + FPNGID+Y +NVGGK
Sbjct:   177 KMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGK 236

Query:   246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA 305
             ML+AVL ++N+H RI +CGMISQYN     ++GV NL N+I K ++++GF++    D+++
Sbjct:   237 MLDAVLVNMNMHGRIAVCGMISQYNL--ENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYS 294

Query:   306 DFTVEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
              F   +  +I+EGKI     +  G+              N+GK V+ V
Sbjct:   295 KFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVV 342

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP;IMP

GO:0032440 "2-alkenal reductase [NAD(P)

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2028736 AT1G26320 [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 133/347 (38%), Positives = 188/347 (54%)

Query:    10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMT 69
             TV +K+     Y + G P    LK+ + ++ L +       V V+ L++S DPY+R  M 
Sbjct:     8 TVTNKQIIFPDYVT-GFPKESDLKITTTTIDLRLPE-GSTSVLVKNLYLSCDPYMRICM- 64

Query:    70 GTNDGL---YFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLL 126
             G  D L     P +     I+  G+++VI S    Y  GD+ L   +   EYS++     
Sbjct:    65 GKPDPLSSSLVPPYKTGVPIIGLGVSKVIDSGHPDYKKGDL-LWGLVGWEEYSVITLTTY 123

Query:   127 TRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAK 186
             +      + +P   Y   LG+PG  A+ G   +  PK G  VFVSAA+G VG   GQ AK
Sbjct:   124 SHFKIEHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVFVSAASGAVGQLVGQFAK 183

Query:   187 LKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKM 246
             L GC VVGS GS + V LLK +FG+DDAFNY  E  F AAL +YFP GID+Y +NVGGKM
Sbjct:   184 LMGCYVVGSAGSKEKVYLLKTKFGFDDAFNYKEEKDFSAALKRYFPEGIDIYFENVGGKM 243

Query:   247 LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFAD 306
             L+AVL ++ +H R+ +CGMISQYN V  + +GV NL  ++ K ++++GF +    D++  
Sbjct:   244 LDAVLINMKLHGRVAVCGMISQYNLV--DPEGVHNLPTILYKRIQLQGFGVCDFYDKYPK 301

Query:   307 FTVEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
             F   +  YI+EGKI     I  G               N+GK +  V
Sbjct:   302 FLDFVLPYIREGKITYVEDIAEGFESGPSALLGLFEGKNVGKQLFVV 348

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2148186 AT5G17000 [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 130/348 (37%), Positives = 188/348 (54%)

Query:    10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMT 69
             T  +K+  +  Y S G P       ++ +V   +     + V V+ L++S DPY+R  M 
Sbjct:     2 TATNKQVVLKNYVS-GFPKESDFDFKTTTVEFKLPG-GSNSVLVKNLYLSCDPYMRIRM- 58

Query:    70 GTND---GLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL-PCDL 125
             G  D         +   + I  +G++RVI S    Y  GD+ L   +   EYS++ P   
Sbjct:    59 GKPDPSTAALAQAYAPGKPIFGYGVSRVIESGHPDYKKGDL-LWGIVGWEEYSVITPMTH 117

Query:   126 LTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
             +  K+     IP   Y   LG+PG  A+ G   +  PK G  V+VSAA+G VG   GQ A
Sbjct:   118 MHFKIQHTD-IPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQFA 176

Query:   186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
             K+ GC VVGS GS + V LLK +FG+DDAFNY  E    AAL + FP GID+Y +NVGGK
Sbjct:   177 KMMGCYVVGSAGSTEKVDLLKTKFGFDDAFNYKEEPDLSAALKRCFPTGIDIYFENVGGK 236

Query:   246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA 305
             ML+AVL ++N H RI +CGMISQYN     ++GV NL N+I K ++++GF +    ++++
Sbjct:   237 MLDAVLLNMNPHGRIAVCGMISQYNL--ENQEGVHNLSNIIYKRIRIQGFAVFDFYEKYS 294

Query:   306 DFTVEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
              F   +  +IKEGKI     +  G+              N+GK V+ +
Sbjct:   295 KFLDFVLPHIKEGKITYVEDVADGLEKGPEALVGLFHGKNVGKQVVVI 342

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2148166 AT5G16990 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 126/331 (38%), Positives = 180/331 (54%)

Query:    25 GVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQ-FNLN 83
             G P        + +V L +       V V+ L++S DPY+R+ M   +      Q +   
Sbjct:    15 GFPKESDFNFTTTTVELRVPE-GSKSVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPG 73

Query:    84 QVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL-PCDLLTRKLDPASGIPFPDYL 142
             + I  +G++RVI S    Y  GD+ L   +   EYS++ P   +  K+     +P   Y 
Sbjct:    74 KPIYGYGVSRVIESGHPDYKKGDL-LWGIVGWEEYSVITPMAHMHFKIQHTD-VPLSYYT 131

Query:   143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
               LG+PG  A+ G   +  PK G  V+VSAA+G VG   GQ AK+ GC VVGS GS + V
Sbjct:   132 GLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKV 191

Query:   203 KLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIIL 262
              LLK +FG+DDAFNY  E    AAL + FP GID+Y +NVGGKML+AVL ++N H RI +
Sbjct:   192 DLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAV 251

Query:   263 CGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS 322
             CGMISQYN     ++GV NL N+I K ++++GF++    D++  F   +   IKEGKI  
Sbjct:   252 CGMISQYNL--ENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITY 309

Query:   323 KHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
                +  G+              N+GK V+ +
Sbjct:   310 VEDVADGLEKAPEALVGLFHGKNVGKQVVVI 340

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP

TAIR|locus:2153759 AT5G37980 [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 128/348 (36%), Positives = 184/348 (52%)

Query:    10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMT 69
             T  + +  +  Y S G P    L + + +V L +       V V+ L++S DP+ R  M 
Sbjct:     9 TATNNQVILRNYVS-GFPKESDLYIAATTVDLRVPP-GSMAVLVKNLYLSCDPFSRIRME 66

Query:    70 G---TNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL-PCDL 125
                 ++       +++ + I  FG+A+ I S    Y  GD+ L   +   EYS++ P   
Sbjct:    67 KPDPSSPASVARAYSIGKPISGFGVAKAIDSCHPNYKTGDL-LWGRVGWEEYSVITPTPS 125

Query:   126 LTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
                K+     +P   Y   LGIPG  A+VG   +  PK G  VFVSAA+G VG   GQ A
Sbjct:   126 SHFKIHHTD-VPLSFYTGLLGIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFA 184

Query:   186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
             K+ GC VVGS  S + V LLK +FGYD+AFNY  E    AAL + FP GID+Y +NVGGK
Sbjct:   185 KMAGCYVVGSASSKEKVDLLKTKFGYDEAFNYKEEHDLSAALKRCFPEGIDIYFENVGGK 244

Query:   246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA 305
             ML+AVL ++  H RI  CGMISQYN    E +GV NL +++ K ++++GF      D+++
Sbjct:   245 MLDAVLENMRTHGRIAACGMISQYNL--KEPEGVHNLASIVYKRIRVQGFAAVEFFDKYS 302

Query:   306 DFTVEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
              F   +  Y++EGKI     I  G+              N+GK ++ V
Sbjct:   303 KFLDFILPYVREGKITYVEDIAQGLENGPSALIGLFHGKNVGKQLVAV 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2153799 AT5G37940 [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 126/348 (36%), Positives = 181/348 (52%)

Query:    10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATM- 68
             T  + +  +  Y S G P    L + + ++ L +       V V+ L++S DP+ R  M 
Sbjct:     9 TATNNQVILRDYVS-GFPKQSDLYIATTTIDLRVPP-GSMAVLVKNLYLSCDPHSRTRMG 66

Query:    69 --TGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL-PCDL 125
                 ++       F + + I  FG+A+ I S    Y  GD+ L   +   EYS++ P   
Sbjct:    67 KPDPSSQASMAHAFTIGKPISGFGVAKAIDSGHPNYKTGDL-LWGRVGWEEYSVITPTPS 125

Query:   126 LTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
                K+     +P   Y   LGIPG  A+VG   +  PK G  VFVSAA+G VG   GQ A
Sbjct:   126 SHFKIHHTD-VPLSFYTGLLGIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFA 184

Query:   186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
             K+ GC VVGS  S + V LLK +FGYDDAFNY  E    AAL + FP GID+Y +NVGGK
Sbjct:   185 KMAGCYVVGSASSKEKVDLLKTKFGYDDAFNYKEEKDLSAALKRCFPEGIDIYFENVGGK 244

Query:   246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA 305
             ML+AVL ++  H RI  CGMISQYN    E +G+ N   ++ K ++++ F      DR++
Sbjct:   245 MLDAVLQNMRTHGRIAACGMISQYNL--KEPEGLHNTATIVHKRIRVQDFAAVEFFDRYS 302

Query:   306 DFTVEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
              F   +  +++EGKI     I  G+              N+GK +++V
Sbjct:   303 KFLDFILPHVREGKITYVEDIAQGLENGPSALIGLFHGKNVGKQLVEV 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

UNIPROTKB|G4MW05 MGG_11308 "Zinc-binding alcohol dehydrogenase domain-containing protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 120/339 (35%), Positives = 185/339 (54%)

Query:    22 ASDGVPT-SDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQF 80
             A +G P   + L +    + L     P+  V  + L+ S DPY R  +       YFP  
Sbjct:    14 APEGFPKPGEDLVIEDRPLELVA---PEGGVVAQVLYASFDPYQRGRLRKPEVKSYFPAM 70

Query:    81 NLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTR----KLDPASGI 136
              + Q +    + RV+ SK  +++ GD++  +  P  +Y +L  +   +    K++ +S  
Sbjct:    71 TIGQPLENTSLLRVLESKSERFAKGDVLKHSLCPNQQYVVLSAEQAQQQSIFKVEESSEF 130

Query:   137 PFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST 196
                 +L  LG+PG  A+  +  +G+PK G  + VS+AAG VG   GQLAK +G  V+GS 
Sbjct:   131 ELAHHLGVLGMPGLTAYASLFEIGKPKKGETILVSSAAGAVGQVVGQLAKREGLTVIGSV 190

Query:   197 GSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNV 256
             GSDD V+  KE  G+D  FNY  E S DAALT+  PNGID+Y +NVGG+ LEA L H+N 
Sbjct:   191 GSDDKVEYCKE-LGFDHVFNYKKE-SPDAALTRLAPNGIDIYYENVGGEHLEAALKHMNK 248

Query:   257 HARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA-DFTVEMESYI 315
             + RI  CGMIS+YN    ++ G++ L+N++ KE+ M GF+  S    +A  F  ++   +
Sbjct:   249 YGRIPTCGMISEYNVKPEDQKGIKGLMNIVSKEITMRGFLYQSIAGPWAAKFKEDVTKGL 308

Query:   316 KEGKIRSK-HVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
             K+G I++K HV+  G+              N GK V+++
Sbjct:   309 KDGSIKAKLHVVE-GIENGPEGFVGMLRGENFGKAVLKI 346

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N8N7	PTGR2_HUMAN	1, ., 3, ., 1, ., 4, 8	0.3196	0.9269	0.9401	yes	no
Q5BK81	PTGR2_RAT	1, ., 3, ., 1, ., 4, 8	0.3284	0.9269	0.9401	yes	no
P97584	PTGR1_RAT	1, ., 3, ., 1, ., 7, 4	0.3323	0.9073	0.9817	yes	no
Q9C0Y6	YKM8_SCHPO	1, ., -, ., -, ., -	0.3583	0.8342	0.8510	yes	no
Q5R806	PTGR2_PONAB	1, ., 3, ., 1, ., 4, 8	0.3225	0.9269	0.9401	yes	no
O34812	YFMJ_BACSU	1, ., -, ., -, ., -	0.3485	0.9241	0.9705	yes	no
Q32L99	PTGR2_BOVIN	1, ., 3, ., 1, ., 4, 8	0.3167	0.9269	0.9401	yes	no
Q91YR9	PTGR1_MOUSE	1, ., 3, ., 1, ., 7, 4	0.3197	0.9129	0.9878	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
cd08295	338	cd08295, double_bond_reductase_like, Arabidopsis a	1e-159
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	1e-132
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	8e-97
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	1e-87
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	8e-83
cd08293	345	cd08293, PTGR2, Prostaglandin reductase	6e-67
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	4e-49
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	1e-43
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	4e-30
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	4e-22
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	6e-21
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	9e-21
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	3e-20
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	6e-19
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	2e-18
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	1e-17
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	3e-17
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	3e-17
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	5e-17
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	2e-16
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	2e-15
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	1e-14
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	4e-14
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	5e-14
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-13
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	2e-13
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	4e-13
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	8e-12
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	3e-11
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	2e-10
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	8e-10
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	4e-09
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	4e-09
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	5e-09
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-08
smart00829	287	smart00829, PKS_ER, Enoylreductase	1e-08
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	2e-08
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	1e-07
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	1e-07
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	2e-07
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-07
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	7e-07
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	1e-06
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	3e-06
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	5e-06
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-05
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	2e-05
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	2e-05
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	3e-05
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	4e-05
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	7e-04
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	0.001
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	0.002
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	0.003
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	0.004

>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

 Score =  449 bits (1157), Expect = e-159
 Identities = 167/343 (48%), Positives = 223/343 (65%), Gaps = 5/343 (1%)

Query: 11  VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG 70
           V +K+  + AY + G P    L+LR+  ++L +       V V+ L++S DPY+R  M G
Sbjct: 1   VRNKQVILKAYVT-GFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKG 59

Query: 71  TNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKL 130
            +D LY P F   +VI  +G+A+V+ S +  +  GD+V   F    EYSL+P     RK+
Sbjct: 60  HDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVW-GFTGWEEYSLIPRGQDLRKI 118

Query: 131 DPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC 190
           D  + +P   YL  LG+PG  A+ G   + +PK G  VFVSAA+G VG   GQLAKLKGC
Sbjct: 119 DH-TDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC 177

Query: 191 KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAV 250
            VVGS GSD+ V LLK + G+DDAFNY  E   DAAL +YFPNGID+Y DNVGGKML+AV
Sbjct: 178 YVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAV 237

Query: 251 LNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVE 310
           L ++N+H RI  CGMISQYN  W E  GVRNLLN+I K VK++GF++G ++ R+ +F  E
Sbjct: 238 LLNMNLHGRIAACGMISQYNLEWPE--GVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEE 295

Query: 311 MESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
           M  YIKEGK++    I  G+ES  E+   LF+ SNIGK V++V
Sbjct: 296 MSGYIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIGKQVVKV 338

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in inflamatory cells, and in other cells by bifunctional LTB4 12-HD/PGR. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 338

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score =  380 bits (978), Expect = e-132
 Identities = 129/328 (39%), Positives = 188/328 (57%), Gaps = 10/328 (3%)

Query: 24  DGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLN 83
           +G P  D  +L        +  + D  V V TL++S+DPY+R  M+      Y P   L 
Sbjct: 12  EGPPPPDDFELVEV----PLPELKDGEVLVRTLYLSVDPYMRGWMSDAKS--YSPPVQLG 65

Query: 84  QVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS 143
           + +   G+  V+ S+   +  GD+V   FL   EY+++      RKLDP+ G+P   YL 
Sbjct: 66  EPMRGGGVGEVVESRSPDFKVGDLVS-GFLGWQEYAVVDGASGLRKLDPSLGLPLSAYLG 124

Query: 144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK 203
            LG+ G  A+ G+  +G+PK G  V VSAAAG VG   GQ+AKL G +VVG  GSD+  +
Sbjct: 125 VLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCR 184

Query: 204 LLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILC 263
            L EE G+D A NY +      AL +  P+GIDVY DNVGG++L+A L  +N   RI LC
Sbjct: 185 WLVEELGFDAAINYKTP-DLAEALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGRIALC 243

Query: 264 GMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSK 323
           G ISQYN   TE  G +NL N+I K + M+GF++  + DRF +   E+  ++ EGK++ +
Sbjct: 244 GAISQYNA--TEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYR 301

Query: 324 HVIYYGVESFLESLGSLFSSSNIGKVVI 351
             +  G+E+  E+   LF+  N GK+V+
Sbjct: 302 EDVVEGLENAPEAFLGLFTGKNTGKLVV 329

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score =  290 bits (745), Expect = 8e-97
 Identities = 133/332 (40%), Positives = 191/332 (57%), Gaps = 16/332 (4%)

Query: 25  GVPTSDHLKLRSASVSLAIDSIP-DHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLN 83
           G P  D  +L    V       P +  V + TL++S+DPY+R  M+      Y P   L 
Sbjct: 20  GAPVPDDFRLEEVDVP-----EPGEGQVLLRTLYLSLDPYMRGRMSDAPS--YAPPVELG 72

Query: 84  QVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS 143
           +V++   +A+V+ S    +  GDIV+       EY++   + L RKLDP S  P   YL 
Sbjct: 73  EVMVGGTVAKVVASNHPGFQPGDIVV-GVSGWQEYAISDGEGL-RKLDP-SPAPLSAYLG 129

Query: 144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK 203
            LG+PG  A+ G+  +GQPK+G  V VSAAAG VG   GQ+AKLKGC+VVG  G  +   
Sbjct: 130 VLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCD 189

Query: 204 LLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILC 263
            L EE G+D   +Y +E  F  AL +  P GIDVY +NVGG++L+AVL  +N+ ARI +C
Sbjct: 190 FLTEELGFDAGIDYKAE-DFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVC 248

Query: 264 GMISQYNKVWTERD-GVRNLLNMIGKEVKMEGFMIGSHMD-RFADFTVEMESYIKEGKIR 321
           G ISQYN    E   G R L  ++ K ++++GF++ S  D RF +   E+  ++KEGKI+
Sbjct: 249 GAISQYNA--PELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQ 306

Query: 322 SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
            +  I  G+E+  E+   L S  N GK+V++V
Sbjct: 307 YRETIVDGLENAPEAFIGLLSGKNFGKLVVKV 338

Length = 340

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score =  267 bits (684), Expect = 1e-87
 Identities = 138/349 (39%), Positives = 197/349 (56%), Gaps = 6/349 (1%)

Query: 6   EKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLR 65
            + + VE+K+  +  Y  DG+P    ++++  +              V+ L++S DPY+R
Sbjct: 2   MEGQVVENKQVILKNYI-DGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMR 60

Query: 66  ATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLP-CD 124
             M   +D  Y P F   Q I  FG+++V+ S D  +  GD++        EYSL+   D
Sbjct: 61  GRMRDFHDS-YLPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLI-SGITGWEEYSLIRSSD 118

Query: 125 LLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQL 184
              RK+     IP   +L  LG+ GF A+ G   +  PK G +VFVSAA+G VG   GQL
Sbjct: 119 NQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQL 178

Query: 185 AKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG 244
           AKL GC VVGS GS   V LLK + G+D+AFNY  E   DAAL +YFP GID+Y DNVGG
Sbjct: 179 AKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGG 238

Query: 245 KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRF 304
            ML+A L ++ +H RI +CGM+S  N +   + G+ NL N+I K ++M+GF+   ++  F
Sbjct: 239 DMLDAALLNMKIHGRIAVCGMVSL-NSLSASQ-GIHNLYNLISKRIRMQGFLQSDYLHLF 296

Query: 305 ADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
             F   +  Y K+GKI     +  G+ES   +L  LFS  N+GK VI+V
Sbjct: 297 PQFLENVSRYYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGKQVIRV 345

Length = 348

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score =  254 bits (651), Expect = 8e-83
 Identities = 119/346 (34%), Positives = 182/346 (52%), Gaps = 20/346 (5%)

Query: 11  VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG 70
           V++K W +     DG P     +L    V   +  + D  V  E L++S+DPY+R     
Sbjct: 1   VKAKTWVL-KKHFDGKPKESDFEL----VEEELPPLKDGEVLCEALFLSVDPYMRPYSKR 55

Query: 71  TNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKL 130
            N+G           ++   +A+VI SK+SK+  G IV+ +F           D      
Sbjct: 56  LNEG---------DTMIGTQVAKVIESKNSKFPVGTIVVASFGWRTHTVSDGKDQPDLYK 106

Query: 131 DPASG---IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKL 187
            PA     +P    L  LG+PG  A+ G+  + +PK+G  V V+ AAG VG   GQ+AK+
Sbjct: 107 LPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKI 166

Query: 188 KGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKML 247
           KGCKV+G  GSDD V  LK E G+D  FNY +  S + AL +  P+GID Y DNVGG+  
Sbjct: 167 KGCKVIGCAGSDDKVAWLK-ELGFDAVFNYKTV-SLEEALKEAAPDGIDCYFDNVGGEFS 224

Query: 248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADF 307
             VL+H+N   R+ +CG IS YN    ++ G      +I K++KMEGF++    DR+ + 
Sbjct: 225 STVLSHMNDFGRVAVCGSISTYNDKEPKK-GPYVQETIIFKQLKMEGFIVYRWQDRWPEA 283

Query: 308 TVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
             ++  +IKEGK++ +  +  G E+  ++   +    N GK +++V
Sbjct: 284 LKQLLKWIKEGKLKYREHVTEGFENMPQAFIGMLKGENTGKAIVKV 329

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176253 cd08293, PTGR2, Prostaglandin reductase

 Score =  214 bits (546), Expect = 6e-67
 Identities = 120/339 (35%), Positives = 193/339 (56%), Gaps = 17/339 (5%)

Query: 24  DGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATM---TGTNDGLYFPQF 80
           +G P +++ ++   ++    D + +  V V TL++S+DPY+R  M   TGT+   Y   +
Sbjct: 15  NGNPVAENFRVEECTLP---DELNEGQVLVRTLYLSVDPYMRCRMNEDTGTD---YLAPW 68

Query: 81  NLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPD 140
            L+QV+   G+  V  SK  K++ GDIV     P   Y++L    L  K+DP        
Sbjct: 69  QLSQVLDGGGVGVVEESKHQKFAVGDIVTSFNWPWQTYAVLDGSSL-EKVDPQLVDGHLS 127

Query: 141 Y-LSSLGIPGFAAWVGIEVLGQPKSGSN--VFVSAAAGGVGMFAGQLAKLKGC-KVVGST 196
           Y L ++G+PG  A +GI+  G    G+N  + VS AAG  G  AGQ+ +L GC +VVG  
Sbjct: 128 YFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGIC 187

Query: 197 GSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNV 256
           GSD+  +LLK E G+D A NY ++   +  L +  P G+DVY DNVGG++ + V++ +N 
Sbjct: 188 GSDEKCQLLKSELGFDAAINYKTDNVAER-LRELCPEGVDVYFDNVGGEISDTVISQMNE 246

Query: 257 HARIILCGMISQYNKVWTERDGVRNLLNMIGKE--VKMEGFMIGSHMDRFADFTVEMESY 314
           ++ IILCG ISQYNK       +      I KE  +  E F++ ++ D+F +   ++  +
Sbjct: 247 NSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQW 306

Query: 315 IKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
           +KEGK++ K  +Y G+E+  E+  S+ +  NIGK +++V
Sbjct: 307 VKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 345

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score =  167 bits (424), Expect = 4e-49
 Identities = 108/342 (31%), Positives = 173/342 (50%), Gaps = 19/342 (5%)

Query: 13  SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTN 72
           +K W +  +   G PT    +L++      +  + +  V +E L++S+DPY+R       
Sbjct: 1   AKTWTLKKHF-VGYPTDSDFELKTVE----LPPLNNGEVLLEALFLSVDPYMRVAAKRLK 55

Query: 73  DGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKL-D 131
           +G           ++   +ARV+ SK+     G IVL A      +S+     L + L +
Sbjct: 56  EG---------DTMMGQQVARVVESKNVALPKGTIVL-ASPGWTSHSISDGKDLEKLLTE 105

Query: 132 PASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK 191
               +P    L ++G+PG  A+ G+  +   K G  V V+AAAG VG   GQ+AKLKGCK
Sbjct: 106 WPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCK 165

Query: 192 VVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVL 251
           VVG+ GSD+ V  LK + G+D AFNY +  S +  L K  P+G D Y DNVGG+    V+
Sbjct: 166 VVGAAGSDEKVAYLK-KLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVI 224

Query: 252 NHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTV-E 310
             +    RI +CG IS YN+      G    + +I +E++MEGF++           + E
Sbjct: 225 GQMKKFGRIAICGAISTYNRTGPLPPGPPPEI-VIYQELRMEGFIVNRWQGEVRQKALKE 283

Query: 311 MESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ 352
           +  ++ EGKI+ K  +  G E+   +   +    N+GK +++
Sbjct: 284 LLKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLGKTIVK 325

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score =  153 bits (388), Expect = 1e-43
 Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 16/242 (6%)

Query: 116 AEYSLLPCDLLTRKLDPASGIP--FPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAA 173
           AEY ++P     R   P   +P   P+ L  L + G  A + +E +G+ KSG  V V+AA
Sbjct: 97  AEYQVVP----ARHAVP---VPELKPEVLPLL-VSGLTASIALEEVGEMKSGETVLVTAA 148

Query: 174 AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN 233
           AGG G FA QLAKL GC V+G+  SD+  + LK   G D   NY +E      L K +P 
Sbjct: 149 AGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLK-SLGCDRPINYKTE-DLGEVLKKEYPK 206

Query: 234 GIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQY--NKVWTERDGVRNLLNMIGKEVK 291
           G+DV  ++VGG+M +  ++++ +  R+I+ G IS Y      +   G      ++ K   
Sbjct: 207 GVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLPPKLLAKSAS 266

Query: 292 MEGFMIGSHMDRFADFTVEMESYIKEGKIRSKH--VIYYGVESFLESLGSLFSSSNIGKV 349
           + GF +  +          +    + GK+  +     + G+ES  +++  L+S  NIGKV
Sbjct: 267 VRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKV 326

Query: 350 VI 351
           V+
Sbjct: 327 VV 328

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  117 bits (294), Expect = 4e-30
 Identities = 83/297 (27%), Positives = 119/297 (40%), Gaps = 31/297 (10%)

Query: 39  VSLAIDSIPDHHVAVETLWISIDP---YLRATMTGTNDGLYFPQFNLNQVILAFGIARVI 95
           V +         V V      ++P    +R        GL  P   L   I     A V+
Sbjct: 18  VEVPEPEPGPGEVLVRVKAAGVNPIDVLVR-------QGLAPPVRPL-PFIPGSEAAGVV 69

Query: 96  R---SKDSKYSDGDIVLRAFLPV-----AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGI 147
               S  + +  GD V            AEY ++P D L    D   G+ F +  ++L +
Sbjct: 70  VAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPD---GLSF-EEAAALPL 125

Query: 148 PGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE 207
            G  AW+ +      K G  V V  AAGGVG  A QLAK  G  VV    S + ++LLK 
Sbjct: 126 AGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK- 184

Query: 208 EFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS 267
           E G D   NY  E   +         G+DV LD VGG    A L  +    R++  G +S
Sbjct: 185 ELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALS 244

Query: 268 QYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKEGKIRSK 323
               V        NLL ++GK + + G  +GS   +  A+   E+   +  GK++  
Sbjct: 245 GGPPVPL------NLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPV 295

Length = 326

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 94.5 bits (236), Expect = 4e-22
 Identities = 65/211 (30%), Positives = 93/211 (44%), Gaps = 26/211 (12%)

Query: 60  IDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIR---SKDSKYSDGDIVLRAFLPV- 115
           +D  +R  +      L  P       I    +A V+       + +  GD V     P  
Sbjct: 42  VDLKIREGLLKAAFPLTLPL------IPGHDVAGVVVAVGPGVTGFKVGDEVF-GMTPFT 94

Query: 116 -----AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV 170
                AEY ++P D L  K  PA  + F +  ++L + G  AW  +  LG  K+G  V +
Sbjct: 95  RGGAYAEYVVVPADELALK--PA-NLSFEE-AAALPLAGLTAWQALFELGGLKAGQTVLI 150

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
             AAGGVG FA QLAK +G +V+  T S  N   L+   G D+  +Y     F+ A    
Sbjct: 151 HGAAGGVGSFAVQLAKARGARVIA-TASAANADFLR-SLGADEVIDYTKGD-FERAAA-- 205

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARII 261
            P G+D  LD VGG+ L   L  V    R++
Sbjct: 206 -PGGVDAVLDTVGGETLARSLALVKPGGRLV 235

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 91.5 bits (228), Expect = 6e-21
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 23/190 (12%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AEY ++P D L         +P PD +S     +LGIP   A+  +      K+G  V V
Sbjct: 100 AEYVVVPADQL---------VPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLV 150

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
              +G VG  A QLA+  G +V+ +  S +  +L+++  G D  FNY +E   D  L   
Sbjct: 151 HGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQA-GADAVFNYRAEDLADRILAAT 209

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEV 290
              G+DV ++ +    L   L+ +    RI++ G             G   +  ++ KE 
Sbjct: 210 AGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGS--------GGLRGTIPINPLMAKEA 261

Query: 291 KMEGFMIGSH 300
            + G ++ + 
Sbjct: 262 SIRGVLLYTA 271

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 90.1 bits (224), Expect = 9e-21
 Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 19/193 (9%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAG 175
           AEY ++P D L    D   G+   +  + L  P   A+  +   G  K G  V V   AG
Sbjct: 90  AEYVVVPADNLVPLPD---GLSL-EEAALLPEPLATAYHALRRAGVLKPGDTVLV-LGAG 144

Query: 176 GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGI 235
           GVG+ A QLAK  G +V+ +  SD+ ++L K E G D   +Y  E   +  L      G 
Sbjct: 145 GVGLLAAQLAKAAGARVIVTDRSDEKLELAK-ELGADHVIDYKEE-DLEEELRLTGGGGA 202

Query: 236 DVYLDNVGGKM-LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG 294
           DV +D VGG   L   L  +    RI++ G  S    +   R        ++ KE+    
Sbjct: 203 DVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRR-------LLFKELT--- 252

Query: 295 FMIGSHMDRFADF 307
            +IGS      DF
Sbjct: 253 -IIGSTGGTREDF 264

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 89.8 bits (224), Expect = 3e-20
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 17/158 (10%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSL---GIP--GFAAWVGIEVLGQPKSGSNVFV 170
           AEY ++P   L         +P P+ LS +    +P   F AW  +  LG  K+G  V +
Sbjct: 95  AEYVVVPAGQL---------LPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLI 145

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
              A GVG  A QLAK  G +V+ + GS++ ++  +   G D A NY +E  F   + + 
Sbjct: 146 HGGASGVGTAAIQLAKALGARVIATAGSEEKLEACR-ALGADVAINYRTE-DFAEEVKEA 203

Query: 231 F-PNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS 267
               G+DV LD VGG  L   L  +    R++L G++ 
Sbjct: 204 TGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIGLLG 241

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 86.2 bits (214), Expect = 6e-19
 Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 31/245 (12%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AEY  +P   L         +P PD LS     +  +    AW  +    + + G  V V
Sbjct: 122 AEYVAVPARNL---------LPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLV 172

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
             A  GVG  A Q+AKL G  V+ + GS+D ++  K E G D   +Y  E          
Sbjct: 173 HGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-ELGADYVIDYRKEDFVREVRELT 231

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEV 290
              G+DV +++VG    E  L  +    R++ CG  + Y       +   +L ++  +++
Sbjct: 232 GKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGY-------EAPIDLRHVFWRQL 284

Query: 291 KMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVI--YYGVESFLESLGSLFSSSNIGK 348
                ++GS M   A+    +   +  GK++   VI   + +E   E+   L S    GK
Sbjct: 285 S----ILGSTMGTKAELDEALR-LVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGK 337

Query: 349 VVIQV 353
           +V+  
Sbjct: 338 IVLTP 342

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 84.2 bits (209), Expect = 2e-18
 Identities = 60/228 (26%), Positives = 89/228 (39%), Gaps = 36/228 (15%)

Query: 33  KLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA 92
            L    V + I +     V V+    S++P       G               I     A
Sbjct: 11  VLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRG---PPKLLLGRPFPPIPGMDFA 67

Query: 93  -RVIR--SKDSKYSDGDIVLRAFLPV------AEYSLLPCDLLTRKLDPASGIPFPDYLS 143
             V+   S  +++  GD V    LP       AEY + P   L +K         P+ +S
Sbjct: 68  GEVVAVGSGVTRFKVGDEVF-GRLPPKGGGALAEYVVAPESGLAKK---------PEGVS 117

Query: 144 -----SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS 198
                +L + G  A   +   G+ K G  V ++ A+GGVG FA Q+AK  G  V G   S
Sbjct: 118 FEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVC-S 176

Query: 199 DDNVKLLKEEFGYDDAFNYNSE--MSFDAALTKYFPNGIDVYLDNVGG 244
             N +L++   G D+  +Y +E  ++  A   KY     DV  D VG 
Sbjct: 177 TRNAELVR-SLGADEVIDYTTEDFVALTAGGEKY-----DVIFDAVGN 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 81.8 bits (203), Expect = 1e-17
 Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 26/246 (10%)

Query: 116 AEYSLLPCDLLTRK---LDPASGIPFP-DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVS 171
           AE  ++P   +      L        P  Y +        A+  +    + + G  V V 
Sbjct: 95  AEEVVVPAAAVFPLPDGLSFEEAAALPVTYGT--------AYHALVRRARLQPGETVLVL 146

Query: 172 AAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF 231
            AAGGVG+ A QLAK  G +V+ +  S++ + L +   G D   +Y      +       
Sbjct: 147 GAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR-ALGADHVIDYRDPDLRERVKALTG 205

Query: 232 PNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS-QYNKVWTERDGVRNLLNMIGKEV 290
             G+DV  D VGG + EA L  +    R+++ G  S +  ++        NLL +  K +
Sbjct: 206 GRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGEIPQIPA------NLLLL--KNI 257

Query: 291 KMEGFMIGSHM----DRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNI 346
            + G   G++     +       E+   + EGKIR      + +E   E+L +L      
Sbjct: 258 SVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKAT 317

Query: 347 GKVVIQ 352
           GKVV+ 
Sbjct: 318 GKVVLT 323

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 63/255 (24%), Positives = 97/255 (38%), Gaps = 45/255 (17%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AEY+++   LL  K         P  LS     +L + G  AW G+      ++G  V +
Sbjct: 100 AEYAVVDARLLALK---------PANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLI 150

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
              AGGVG  A QLAK  G +V  +T S +         G D    Y    +    + ++
Sbjct: 151 HGGAGGVGHVAVQLAKAAGARVY-ATASSEKAAFA-RSLGADPIIYY--RETVVEYVAEH 206

Query: 231 FP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE 289
               G DV  D VGG+ L+A    V ++ R++            T      +L  +  + 
Sbjct: 207 TGGRGFDVVFDTVGGETLDASFEAVALYGRVVSI------LGGATH-----DLAPLSFRN 255

Query: 290 VKMEG-FMI-----GSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESF-LESLGS--- 339
               G F +     G       +   E    ++ G++R          +F LE   +   
Sbjct: 256 ATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLR----PLLDPRTFPLEEAAAAHA 311

Query: 340 -LFSSSNIGKVVIQV 353
            L S S  GK+VI V
Sbjct: 312 RLESGSARGKIVIDV 326

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 81.0 bits (201), Expect = 3e-17
 Identities = 72/246 (29%), Positives = 104/246 (42%), Gaps = 33/246 (13%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AEY +LP + L R          PD+LS     +L   G  AW  +  LG  K G  V V
Sbjct: 116 AEYVVLPEEGLVRA---------PDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLV 166

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
               GGV +FA Q AK  G +V+ ++ SD+ ++  K   G D   NY +   +   + K 
Sbjct: 167 QGT-GGVSLFALQFAKAAGARVIATSSSDEKLERAK-ALGADHVINYRTTPDWGEEVLKL 224

Query: 231 FPN-GIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE 289
               G+D  ++  G   L   +  V     I L G +S         +    LL ++ K 
Sbjct: 225 TGGRGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLSG-------FEAPVLLLPLLTKG 277

Query: 290 VKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVI--YYGVESFLESLGSLFSSSNIG 347
             + G  +GS    F      M   I+  +IR   VI   +  E   E+   L S S+ G
Sbjct: 278 ATLRGIAVGSRAQ-FEA----MNRAIEAHRIRP--VIDRVFPFEEAKEAYRYLESGSHFG 330

Query: 348 KVVIQV 353
           KVVI+V
Sbjct: 331 KVVIRV 336

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 80.4 bits (199), Expect = 5e-17
 Identities = 54/186 (29%), Positives = 77/186 (41%), Gaps = 21/186 (11%)

Query: 90  GIARVIRSKDSKYSDGDIVLRAFLP---VAEYSLLPCDLLTRKLDPASGIPFPDYLS--- 143
           G    +    S++  GD V  A +     AEY  +P   +         +P P+ LS   
Sbjct: 67  GEVVAVGEGVSRWKVGDRVC-ALVAGGGYAEYVAVPAGQV---------LPVPEGLSLVE 116

Query: 144 SLGIPG--FAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN 201
           +  +P   F  W  +   G  K+G  V +   A G+G  A QLAK  G +V  + GSD+ 
Sbjct: 117 AAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEK 176

Query: 202 VKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN-GIDVYLDNVGGKMLEAVLNHVNVHARI 260
                E  G D A NY  E  F   +       G+DV LD VGG  L   +  + +  RI
Sbjct: 177 CA-ACEALGADIAINYREE-DFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRI 234

Query: 261 ILCGMI 266
           +  G  
Sbjct: 235 VQIGFQ 240

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 63/274 (22%), Positives = 116/274 (42%), Gaps = 29/274 (10%)

Query: 90  GIARVIRSKDSKYSDGDIVLRAFLP--VAEYSLLPCDLLTRKLDPASGIPFPDYLS---- 143
           GI   + S  +    GD V+    P   A +  +   L+ +          PD LS    
Sbjct: 37  GIVTRVGSGVTGLKVGDRVM-GLAPGAFATHVRVDARLVVKI---------PDSLSFEEA 86

Query: 144 -SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
            +L +    A+  +  L + + G +V + AAAGGVG  A QLA+  G +V  + GS++  
Sbjct: 87  ATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKR 146

Query: 203 KLLKEEFGYDDAFNYNSEMSF-DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARII 261
           + L+E  G  D    + ++SF D  L      G+DV L+++ G++L A    +    R +
Sbjct: 147 EFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFV 206

Query: 262 LCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM----DRFADFTVEMESYIKE 317
               I + + +   + G+R  L    + V      +        +   +   E+   ++ 
Sbjct: 207 ---EIGKRDILSNSKLGMRPFL----RNVSFSSVDLDQLARERPELLRELLREVLELLEA 259

Query: 318 GKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI 351
           G ++          S +++   + S  +IGKVV+
Sbjct: 260 GVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVVL 293

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 76.1 bits (188), Expect = 2e-15
 Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 18/216 (8%)

Query: 152 AWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAK-LKGCKVVGSTGSDDNVKLLKEEFG 210
           A+  +  LG  + G +V V +AAGGVG+ AGQL K +    VVG T S    + LKE  G
Sbjct: 126 AYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVG-TASASKHEALKEN-G 183

Query: 211 YDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYN 270
                +Y ++  +   + K  P G+D+ LD +GG+      + +    R+++ G  +   
Sbjct: 184 VTHVIDYRTQ-DYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAANLVT 242

Query: 271 ----------KVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEME---SYIKE 317
                     K W  R  V + + +I +   + GF +G   +     T  M+      +E
Sbjct: 243 GEKRSWFKLAKKWWNRPKV-DPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEE 301

Query: 318 GKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
           GKI+ K    +  E   E++  L S  NIGKVV+  
Sbjct: 302 GKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 21/215 (9%)

Query: 152 AWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY 211
           AW  ++  G  K G +V + A A GVG  A QLA+  G   + +T S++ V   K +   
Sbjct: 128 AWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCK-KLAA 186

Query: 212 DDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYN 270
                Y  E  F   + K     G+++ LD VGG  L      + V  + I+ G +    
Sbjct: 187 IILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGAK 246

Query: 271 KVWTERDGVR--NLLNMIGKEVKMEGFMIGSHMDRF-----ADFTVEMESYIKEGKIRSK 323
                   V   NLL ++ K   +    + S  D +     A F  E+  Y++EG+I  K
Sbjct: 247 --------VEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEI--K 296

Query: 324 HVI--YYGVESFLESLGSLFSSSNIGKVVIQVKAP 356
            ++   Y +E   E+   L  + NIGKVV+ V  P
Sbjct: 297 PIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNEP 331

Length = 334

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAG 175
           AEY+++    +   L     + F +  ++L   G  A+  +    + ++G  + ++  AG
Sbjct: 97  AEYTVVDARAV---LPLPDSLSFEE-AAALPCAGLTAYQALFKKLRIEAGRTILITGGAG 152

Query: 176 GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGI 235
           GVG FA QLAK  G   V +T S  N + +K   G D   +YN E   +         G+
Sbjct: 153 GVGSFAVQLAKRAG-LRVITTCSKRNFEYVK-SLGADHVIDYNDEDVCERIKEITGGRGV 210

Query: 236 DVYLDNVGGKMLEA 249
           D  LD VGG+   A
Sbjct: 211 DAVLDTVGGETAAA 224

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 12/135 (8%)

Query: 176 GVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-N 233
           GVG+ A QLAK  G  +V+    S++ ++L K E G D   NY  +  F   + +     
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAK-ELGADHVINY-RDEDFVERVRELTGGR 58

Query: 234 GIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM 292
           G+DV +D VG    LE  L  +    R+++ G+                L +++ KE+ +
Sbjct: 59  GVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAP-------VPFPLRDLLLKELTI 111

Query: 293 EGFMIGSHMDRFADF 307
            G + G   +     
Sbjct: 112 LGSLGGGREEFEEAL 126

Length = 131

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 63/225 (28%), Positives = 91/225 (40%), Gaps = 28/225 (12%)

Query: 134 SGIPFPDYLSSLGIPGFAAWVGIEV----LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG 189
           S +  PD +S       A  VG  V        K G  V V+ A GGVG+ A QLAK  G
Sbjct: 128 SLVKLPDNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALG 187

Query: 190 CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEA 249
            +V+  T S + +K+LKE                          G DV ++ VG   +E 
Sbjct: 188 ARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKLG------GADVVIELVGSPTIEE 241

Query: 250 VLNHVNVHARIILCGMISQYNKVWTERDGVRNLLN---MIGKEVKMEGFMIGSHMDRFAD 306
            L  +N   R++L G +                L    +I KE++    +IGS     AD
Sbjct: 242 SLRSLNKGGRLVLIGNV----------TPDPAPLRPGLLILKEIR----IIGSISATKAD 287

Query: 307 FTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI 351
              E    +KEGKI+        +E   E+L  L S   +G++V+
Sbjct: 288 VE-EALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVL 331

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 45/145 (31%), Positives = 62/145 (42%), Gaps = 21/145 (14%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AEY ++P   L         +  PD +S     +L + G  A   +      K G  V V
Sbjct: 92  AEYRVVPASRL---------VKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLV 142

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDA---AL 227
            AAAGGVG+   Q AK  G  V+G+  S++  +L +   G D   NY  E  F      +
Sbjct: 143 HAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAA-GADHVINYRDE-DFVERVREI 200

Query: 228 TKYFPNGIDVYLDNVGGKMLEAVLN 252
           T     G+DV  D VG    E  L+
Sbjct: 201 TG--GRGVDVVYDGVGKDTFEGSLD 223

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 10/192 (5%)

Query: 163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS 222
             G ++ +  A GG G+ A QLA+LKG ++  +  SDD ++ LK + G     NY  E  
Sbjct: 119 AKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLK-QLGVPHVINY-VEED 176

Query: 223 FDA---ALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGV 279
           F+     LT     G+DV ++ + G+ ++  LN +    R +   M +  +    +   +
Sbjct: 177 FEEEIMRLTGG--RGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSVL 234

Query: 280 RNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGS 339
            N  N     V +   ++    +  AD+  EM S ++EG++R      +  +   E+   
Sbjct: 235 SN--NQSFHSVDLRKLLLLDP-EFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRY 291

Query: 340 LFSSSNIGKVVI 351
           L    NIGKVV+
Sbjct: 292 LSDRENIGKVVV 303

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 64.9 bits (159), Expect = 8e-12
 Identities = 68/252 (26%), Positives = 98/252 (38%), Gaps = 42/252 (16%)

Query: 35  RSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARV 94
                +L +D +P+  V +   + S++       TG N G+    +     I A G   V
Sbjct: 14  SLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATG-NGGV-TRNYPHTPGIDAAGT--V 69

Query: 95  IRSKDSKYSDGD--IVLRAFLPV------AEYSLLPCDLLTRKLDPASGIPFPDYLSS-- 144
           + S D ++ +GD  +V    L +      AEY  +P D +         +P P+ LS   
Sbjct: 70  VSSDDPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWV---------VPLPEGLSLRE 120

Query: 145 ---LGIPGFAA---WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQ-LAKLKGCKVVGSTG 197
              LG  GF A      +E  GQ      V V+ A GGVG  A   LAKL G  VV  TG
Sbjct: 121 AMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKL-GYTVVALTG 179

Query: 198 SDDNVKLLKE----EFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNH 253
            ++    LK     E    +     S+      L K    G    +D VGG +L  +L  
Sbjct: 180 KEEQADYLKSLGASEVLDREDLLDESK----KPLLKARWAGA---IDTVGGDVLANLLKQ 232

Query: 254 VNVHARIILCGM 265
                 +  CG 
Sbjct: 233 TKYGGVVASCGN 244

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 18/189 (9%)

Query: 163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS 222
           K G  V V+ A GGVG+ A Q+AK  G KV+  T S+   K++ +   Y D     S+ S
Sbjct: 161 KKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSK---YADYVIVGSKFS 217

Query: 223 FDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNL 282
            +    K    G D+ ++ VG   LE  L  +N+  +II  G +   +  ++ R G    
Sbjct: 218 EEV--KKI--GGADIVIETVGTPTLEESLRSLNMGGKIIQIGNVDP-SPTYSLRLGY--- 269

Query: 283 LNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFS 342
             +I K++++ G +  +  D   +  +++   + EGKI+        +    ++L  L  
Sbjct: 270 --IILKDIEIIGHISATKRD--VEEALKL---VAEGKIKPVIGAEVSLSEIDKALEELKD 322

Query: 343 SSNIGKVVI 351
            S IGK+++
Sbjct: 323 KSRIGKILV 331

Length = 334

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 55/242 (22%), Positives = 95/242 (39%), Gaps = 26/242 (10%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS--SLG-IP--GFAAWVGIEVLGQPKSGSNVFV 170
           AEY+L+P + +               LS   L  +P   + AW  +      + G  + +
Sbjct: 98  AEYTLVPNEQV---------YAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLI 148

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
                 VG+ A +LAK  G  V  +T S +   LLK E G D+      + +    L   
Sbjct: 149 RGGTSSVGLAALKLAKALGATVTATTRSPERAALLK-ELGADEVV--IDDGAIAEQLRAA 205

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEV 290
            P G D  L+ VG   L+  L H+     + + G++      WT  D   N ++ I   V
Sbjct: 206 -PGGFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLGG---QWTLED--FNPMDDIPSGV 259

Query: 291 KMEGFMIGSHMDRFADFTV-EMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKV 349
            +   + GS         + E+  ++  G +       +  +  +E+   + S+   GKV
Sbjct: 260 NL--TLTGSSSGDVPQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAHAYMESNRAFGKV 317

Query: 350 VI 351
           V+
Sbjct: 318 VV 319

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 24/207 (11%)

Query: 143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
           +SL +    A+  ++  G    G  V V  A+G  G+FA QLAK+ G +V+  +  D   
Sbjct: 142 ASLPVAALTAYHALKTAGLGP-GETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRKDW-- 198

Query: 203 KLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIIL 262
               +EFG D+  +Y+        +TK      DV ++++G    +  L+ +    R++ 
Sbjct: 199 ---LKEFGADEVVDYDEVEEKVKEITKMA----DVVINSLGSSFWDLSLSVLGRGGRLVT 251

Query: 263 CGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS 322
            G +       T  +   +L ++  K++     +IGS      +  +E+    K+ K++ 
Sbjct: 252 FGTL-------TGGEVKLDLSDLYSKQIS----IIGSTGGTRKEL-LELVKIAKDLKVKV 299

Query: 323 KHVIYYGVESFLESLGSLFSSSNIGKV 349
                + +E   E+L  LFS    G++
Sbjct: 300 WK--TFKLEEAKEALKELFSKERDGRI 324

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 15/157 (9%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AEY+L+P   +         +  PD LS     +L +    A+  +  L   + G +V +
Sbjct: 100 AEYALVPAAAV---------VKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLI 150

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
           +AA+  VG+ A Q+A   G  V+ +T + +    L    G       + E      L   
Sbjct: 151 TAASSSVGLAAIQIANAAGATVIATTRTSEKRDALL-ALGAAHVIVTDEEDLVAEVLRIT 209

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS 267
              G+DV  D VGG     + + +     +++ G +S
Sbjct: 210 GGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALS 246

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 42/123 (34%), Positives = 57/123 (46%), Gaps = 9/123 (7%)

Query: 143 SSLGIPGFAAWVGI-EVLG---QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS 198
           +SL   G  AW  +  V G   +  +G  V +   +GGVG FA QL K  G  V   T S
Sbjct: 137 ASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTT-TCS 195

Query: 199 DDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHA 258
            D + L+K   G DD  +YN+E  F+  LT+      DV LD VGG   +  L  +    
Sbjct: 196 TDAIPLVK-SLGADDVIDYNNE-DFEEELTER--GKFDVILDTVGGDTEKWALKLLKKGG 251

Query: 259 RII 261
             +
Sbjct: 252 TYV 254

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 36/192 (18%)

Query: 94  VIRSKDSKYSDGD--IVLRAFLPV------AEYSLLPCDLLTRKLDPASGIPFPDYLS-- 143
           V+ S D ++  GD  IV    L V      +EY+ +P + +         +P P  L+  
Sbjct: 69  VVESNDPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWV---------VPLPKGLTLK 119

Query: 144 ---SLGIPGFAAWVGIEVLGQ----PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST 196
               LG  GF A + I  L +    P+ G  V V+ A GGVG  A  +    G +VV ST
Sbjct: 120 EAMILGTAGFTAALSIHRLEENGLTPEQGP-VLVTGATGGVGSLAVSILAKLGYEVVAST 178

Query: 197 GSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVY---LDNVGGKMLEAVLNH 253
           G  D    LK + G  +          +       P     +   +D VGGK L  +L+ 
Sbjct: 179 GKADAADYLK-KLGAKEVIPRE-----ELQEESIKPLEKQRWAGAVDPVGGKTLAYLLST 232

Query: 254 VNVHARIILCGM 265
           +     + + G+
Sbjct: 233 LQYGGSVAVSGL 244

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 19/179 (10%)

Query: 174 AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDA-ALTKYFP 232
           AGG+G  A Q AK  G +V+  T S++ ++L K + G D     NS  S    A+ +   
Sbjct: 175 AGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK-KLGADHV--INSSDSDALEAVKEIA- 230

Query: 233 NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM 292
              D  +D VG   LE  L  +     ++L G+             +     +I KE+ +
Sbjct: 231 ---DAIIDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIP------LLPAFLLILKEISI 281

Query: 293 EGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI 351
            G ++G+  D       E   +  EGKI+ + +    ++   E+   +      G+ VI
Sbjct: 282 VGSLVGTRAD-----LEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVI 335

Length = 339

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 55.1 bits (134), Expect = 1e-08
 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 22/228 (9%)

Query: 136 IPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC 190
           +P PD  S     ++ +    A+  +  L + + G +V + AAAGGVG  A QLA+  G 
Sbjct: 70  VPIPDGWSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLARHLGA 129

Query: 191 KVVGSTGSDDNVKLLKEEFGYDDAFNYNS-EMSF-DAALTKYFPNGIDVYLDNVGGKMLE 248
           +V  + GS +    L    G  D   ++S ++SF D  L      G+DV L+++ G+ L+
Sbjct: 130 EVFATAGSPEKRDFL-RALGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLSGEFLD 188

Query: 249 AVLNHVNVHARIILCGM--ISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM---DR 303
           A L  +    R +  G   I   +++      +          V      + +     DR
Sbjct: 189 ASLRCLAPGGRFVEIGKRDIRDNSQL-----AMAPFR----PNVSYHAVDLDALEEGPDR 239

Query: 304 FADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI 351
             +   E+     EG +R   V  + +    ++   +    +IGKVV+
Sbjct: 240 IRELLAEVLELFAEGVLRPLPVTVFPISDAEDAFRYMQQGKHIGKVVL 287

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 20/191 (10%)

Query: 163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS 222
            +G  V V+ A+GGVG    QLAK +G  V+   G+     +     G D     ++ + 
Sbjct: 176 GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVR--ALGADTVILRDAPLL 233

Query: 223 FDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNL 282
            DA         +DV  D VGG +   +L  +    R +  G I+    V  E D    L
Sbjct: 234 ADAKALG--GEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIA--GPV-VELD----L 284

Query: 283 LNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIY--YGVESFLESLGSL 340
             +  K++     + GS +     F   +  YI+EG+IR   V+   + +    E+    
Sbjct: 285 RTLYLKDLT----LFGSTLGTREVFR-RLVRYIEEGEIRP--VVAKTFPLSEIREAQAEF 337

Query: 341 FSSSNIGKVVI 351
               ++GK+V+
Sbjct: 338 LEKRHVGKLVL 348

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 142 LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN 201
            ++L + G  A   +   G P  G  V V+ A+GGVG FA QLA L G  VV   GS   
Sbjct: 111 AATLPVAGVTALRALRRGG-PLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPAR 169

Query: 202 VKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARII 261
            + L+E    +      SE+S            +D+ +D+VGG  L   L  +     ++
Sbjct: 170 AEGLRELGAAEVVVGG-SELS---------GAPVDLVVDSVGGPQLARALELLAPGGTVV 219

Query: 262 LCGMIS 267
             G  S
Sbjct: 220 SVGSSS 225

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 155 GIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA 214
           G+  L     G  V V+AAAGG+G    QLAK  G  VVG+ G      L++   G D A
Sbjct: 133 GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVR-ALGADVA 191

Query: 215 FNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS 267
            +Y      D         G+ V LD VGG +  A L  +    R +  G  S
Sbjct: 192 VDYTRPDWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWAS 244

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 39/246 (15%)

Query: 39  VSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSK 98
            +L +  +P+  V ++  + S++ Y  A +  T  G     + +   I A G   V+ S+
Sbjct: 17  ETLDLSDLPEGDVLIKVAYSSLN-YKDA-LAITGKGGVVRSYPMIPGIDAAGT--VVSSE 72

Query: 99  DSKYSDGDIVL--------RAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSS-----L 145
           D ++ +GD V+              ++Y+ +P D L         +P P+ LS      L
Sbjct: 73  DPRFREGDEVIVTGYGLGVSHDGGYSQYARVPADWL---------VPLPEGLSLREAMAL 123

Query: 146 GIPGFAAWVGIEVLGQ----PKSGSNVFVSAAAGGVGMFAGQ-LAKLKGCKVVGSTGSDD 200
           G  GF A + +  L +    P+ G  V V+ A GGVG  A   L+KL G +VV STG  +
Sbjct: 124 GTAGFTAALSVMALERNGLTPEDGP-VLVTGATGGVGSLAVAILSKL-GYEVVASTGKAE 181

Query: 201 NVKLLKEEFGYDDAFNYNSEMSFDAALTK-YFPNGIDVYLDNVGGKMLEAVLNHVNVHAR 259
               LK E G  +  +          L K  +   +    D VGG  L  VL  +     
Sbjct: 182 EEDYLK-ELGASEVIDREDLSPPGKPLEKERWAGAV----DTVGGHTLANVLAQLKYGGA 236

Query: 260 IILCGM 265
           +  CG+
Sbjct: 237 VAACGL 242

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 19/206 (9%)

Query: 152 AWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFG 210
           A+ G       + G  V V   AG +G+ A  LAKL G   V+    S + ++L KE  G
Sbjct: 156 AYHGHAERAAVRPGGTVVV-VGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG 214

Query: 211 YDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQ 268
             D     SE    A + +     G DV ++ VG    L+  L  +     +++ G    
Sbjct: 215 -ADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVG---- 269

Query: 269 YNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVI-- 326
              V+   D       ++ KE+ + G +  S  + F    +++   +  GKI  + +I  
Sbjct: 270 ---VYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFER-ALDL---LASGKIDPEKLITH 322

Query: 327 YYGVESFLESLGSLFSS-SNIGKVVI 351
              ++   E+            KVV+
Sbjct: 323 RLPLDDAAEAYELFADRKEEAIKVVL 348

Length = 350

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 17/180 (9%)

Query: 152 AWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY 211
           A   +  L     G  V V  A G +G+ A Q  K+ G K V +   DD    +  E G 
Sbjct: 148 ALHAVR-LAGITLGDTVVVIGA-GTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGA 205

Query: 212 DDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYN 270
           DD  N   E   +         G D+ ++  G    +E  L       +++L G+   Y 
Sbjct: 206 DDTIN-PKEEDVEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGI--PYG 262

Query: 271 KVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADF-TVEMES---YIKEGKIRSKHVI 326
            V    +    +L    KE+     + GS     A F   E  +    +  GKI+ + +I
Sbjct: 263 DVTLSEEAFEKILR---KELT----IQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLI 315

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 22/152 (14%)

Query: 100 SKYSDGDIVLRAFLPV---AEYSLLP-CDL--LTRKLDPASGIPFP-DYLSSLGIPGFAA 152
           + +  GD V  A   V   AEY  L    L  +   +D A  +    +Y++        A
Sbjct: 77  TGFEVGDRVA-ALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVT--------A 127

Query: 153 WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD 212
           +  +    +  +G  V +  A+GGVG    +LA L G +V G T S+ N   L+E     
Sbjct: 128 YQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYG-TASERNHAALRELGAT- 185

Query: 213 DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG 244
              +Y ++    A LT   P G+DV  D VGG
Sbjct: 186 -PIDYRTKDWLPAMLT---PGGVDVVFDGVGG 213

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNS 219
           G+ K G  V V    GG+G+ A Q+AK  G  V+     ++ ++L K E G D+  N + 
Sbjct: 161 GEVKPGETVLV-IGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK-ELGADEVLN-SL 217

Query: 220 EMSFDAALTKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGM 265
           + S           G DV  D VG     E     V    RI++ G+
Sbjct: 218 DDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGL 264

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 26/141 (18%)

Query: 89  FGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIP 148
            G        D +         AF    EY +   DL  +   P   I F +  ++L + 
Sbjct: 83  AGFVHGGNPNDPRNG-------AF---QEYVVADADLTAKI--P-DNISFEE-AATLPVG 128

Query: 149 GFAAWVGI----------EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS 198
              A + +                  G  V +   +  VG  A QLAKL G KV+ +T S
Sbjct: 129 LVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVI-TTAS 187

Query: 199 DDNVKLLKEEFGYDDAFNYNS 219
             N  L+K   G D  F+Y+ 
Sbjct: 188 PKNFDLVK-SLGADAVFDYHD 207

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 23/244 (9%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAG 175
            EY + P D L    D  S     +  + L I    AW+ +    +   G  V  +AA  
Sbjct: 94  QEYVVAPADDLIPVPDSIS----DEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANS 149

Query: 176 GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFD---AALTKYFP 232
            VG    QLAKL G K +     D+ V+ LK   G D+  + + E          T    
Sbjct: 150 AVGRMLIQLAKLLGFKTINVVRRDEQVEELKAL-GADEVIDSSPE-DLAQRVKEATG--G 205

Query: 233 NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM 292
            G  + LD VGG+    +   +     ++  G++S     +            I K++ +
Sbjct: 206 AGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPVPFPRSV-------FIFKDITV 258

Query: 293 EGF-----MIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIG 347
            GF     +  +  +   +   E+   ++ G + +     + +E F E++ +       G
Sbjct: 259 RGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGG 318

Query: 348 KVVI 351
           KV++
Sbjct: 319 KVLL 322

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 125 LLTRKLDPASGIPFPDYLSSLGIPGF-----AAWVGIEVLGQ-PKSGSNVFVSAAAGGVG 178
           L+  K D  S    P+ +S      +      A+  +E LGQ     S V V   +  VG
Sbjct: 106 LVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVG 165

Query: 179 MFAGQLAK--LKGCKVVG--STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNG 234
            FA QLAK       VVG  S+ S +  K    + G D   +Y++  S    L     N 
Sbjct: 166 RFAIQLAKNHYNIGTVVGTCSSRSAELNK----KLGADHFIDYDAH-SGVKLLKPVLENV 220

Query: 235 -----IDVYLDNVGG 244
                 D+ LD VGG
Sbjct: 221 KGQGKFDLILDCVGG 235

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 61/289 (21%), Positives = 106/289 (36%), Gaps = 47/289 (16%)

Query: 90  GIARVIR--SKDSKYSDGD--IVLRAFLPV-AEYSLLPCDLLTRKLDPASGIPFPDYLSS 144
           G+  V++  S       GD  I LR  L     ++++P D L  K+   + +  P+  ++
Sbjct: 71  GVGEVVKVGSGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDL-IKVP--NDVD-PEQAAT 126

Query: 145 LGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVV----GSTGSDD 200
           L +    A+  +E   + + G  V  + A   VG    QLAKL G K +         ++
Sbjct: 127 LSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEE 186

Query: 201 NVKLLKEEFGYDDAFNYNSEMSFDAA--LTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHA 258
             + LK   G D         S  A   L         + L+ VGGK    +   ++   
Sbjct: 187 LKERLK-ALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPGG 245

Query: 259 RIILCGMISQYNKVWTERDGV----RNLLNMIGKEVKMEGFMIGSHMDR-----FADFTV 309
            ++  G +S           V      L   I K++ + GF +   + R       D   
Sbjct: 246 TMVTYGGMS--------GQPVTVPTSLL---IFKDITLRGFWLTRWLKRANPEEKEDMLE 294

Query: 310 EMESYIKEGKIRSKHVIYYG-------VESFLESLGSLFSSSNIGKVVI 351
           E+   I+EGK+++  V            ++   +L         GK V+
Sbjct: 295 ELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGG----GKQVL 339

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 29/133 (21%)

Query: 93  RVIRSKDSKYSDGDIVL--------RAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSS 144
            V+ S   ++  GD V+        R +   A+ + +  D L         +P P+ LS+
Sbjct: 68  TVVESSSPRFKPGDRVVLTGWGVGERHWGGYAQRARVKADWL---------VPLPEGLSA 118

Query: 145 -----LGIPGFAAWVGIEVLGQ----PKSGSNVFVSAAAGGVGMFA-GQLAKLKGCKVVG 194
                +G  GF A + +  L      P  G  V V+ AAGGVG  A   LA+L G +VV 
Sbjct: 119 RQAMAIGTAGFTAMLCVMALEDHGVTPGDGP-VLVTGAAGGVGSVAVALLARL-GYEVVA 176

Query: 195 STGSDDNVKLLKE 207
           STG  +    L+ 
Sbjct: 177 STGRPEEADYLRS 189

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 172 AAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFD--AALTK 229
           AAAGGVG+ A Q AK  G K++G+ GS    +  K+  G     NY  E   +    +T 
Sbjct: 148 AAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKA-GAWQVINYREENIVERVKEIT- 205

Query: 230 YFPNG--IDVYLDNVGGKMLEAVLN 252
               G  + V  D+VG    EA L+
Sbjct: 206 ---GGKKVRVVYDSVGKDTWEASLD 227

Length = 327

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 11/178 (6%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWV-GIEVLGQPKSGSNVFVSAAA 174
           AE+  LP      ++        PD +++      A  +  ++  G   +G  V V  A 
Sbjct: 132 AEHIYLPPGTAIVRVPDNV----PDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGA- 186

Query: 175 GGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY---F 231
           G +G++A   AKL G + V           L  EFG D   + +                
Sbjct: 187 GPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITG 246

Query: 232 PNGIDVYLDNVGGKM-LEAVLNHVNVHARIILCGMISQYNKVWTE-RDGVRNLLNMIG 287
             G DV ++  G    +   L  +      +L G ++    V  +    VR  L +IG
Sbjct: 247 GRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIG 304

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 17/194 (8%)

Query: 76  YFPQFNLNQVILAFGIARVIRSKDSK---YSDGDIVLRAFLPVAEYSLLPCDLLTRKLDP 132
            F  +N  +  L  G  R+ R        YS G +        AEY+++P   L   L  
Sbjct: 108 DFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGL--------AEYAVVPATALA-PLPE 158

Query: 133 ASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKV 192
              +      + LG  GF A+  ++     + G  V V    GGVG  A QLAK  G   
Sbjct: 159 --SLD-YTESAVLGCAGFTAYGALKHAADVRPGETVAV-IGVGGVGSSAIQLAKAFGASP 214

Query: 193 VGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVL 251
           + +    D      +E G     N   E +  A        G+DV ++ +G  +  +  L
Sbjct: 215 IIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLAL 274

Query: 252 NHVNVHARIILCGM 265
           + V    R ++ G+
Sbjct: 275 DVVRDGGRAVVVGL 288

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 14/141 (9%)

Query: 131 DPASGIPFPDYLSSLGIP-----GFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA 185
           D    +  PD L           G   +  +   G P+ G  V V    GG+G  A Q A
Sbjct: 125 DAEYTVLLPDGLPLAQAAPLLCAGITVYSALRDAG-PRPGERVAVLGI-GGLGHLAVQYA 182

Query: 186 KLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV-GG 244
           +  G + V  T S D  +L + + G D+  +  +E+   AA       G DV L  V  G
Sbjct: 183 RAMGFETVAITRSPDKRELAR-KLGADEVVDSGAELDEQAAA-----GGADVILVTVVSG 236

Query: 245 KMLEAVLNHVNVHARIILCGM 265
              EA L  +    RI+L G+
Sbjct: 237 AAAEAALGGLRRGGRIVLVGL 257

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 26/204 (12%)

Query: 155 GIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDD 213
           G+++LG  K G +V V   AG +G+   QL KL G  +V  +  +++ ++L K + G  +
Sbjct: 151 GLDLLG-IKPGDSVLV-FGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK-KLGATE 207

Query: 214 AFNYNSEMSFDAALTKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKV 272
             + + E           P G DV ++  G  K LE  + +      +++ G+ +   +V
Sbjct: 208 TVDPSREDPEAQKEDN--PYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARV 265

Query: 273 -WTERDGVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKEGKIRSKHVI--YY 328
                    +   +  KE+ + G  I  +   R           ++ GKI  K ++    
Sbjct: 266 SI-------SPFEIFQKELTIIGSFINPYTFPRAIA-------LLESGKIDVKGLVSHRL 311

Query: 329 GVESFLESLGSLFSSSNIGKVVIQ 352
            +E   E+L     S    KVV+ 
Sbjct: 312 PLEEVPEAL-EGMRSGGALKVVVV 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKL-LKEEFGYDDAFNYN 218
               +G  V V   AG +G+   Q+AK +G +V+     D+  +L    E G DD  N  
Sbjct: 155 AGVTAGDTVLV-VGAGPIGLGVIQVAKARGARVIVVDIDDE--RLEFARELGADDTIN-V 210

Query: 219 SEMSFDAALTKYFP-NGIDVYLDNVGGK--MLEAVLNHVNVHARIILCG 264
            +    A L +     G DV +D  G    M EAV   V    R++L G
Sbjct: 211 GDEDVAARLRELTDGEGADVVIDATGNPASMEEAV-ELVAHGGRVVLVG 258

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	100.0
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	100.0
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	100.0
cd08252	336	AL_MDR Arginate lyase and other MDR family members	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	100.0
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	100.0
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	100.0
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	100.0
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	100.0
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.97
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.97
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.97
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.96
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.74
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.6
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.57
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.34
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.28
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.55
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	98.52
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.47
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.35
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.34
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.26
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.22
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.21
PLN02494	477	adenosylhomocysteinase	98.15
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.1
PRK08324	681	short chain dehydrogenase; Validated	98.03
PRK12742	237	oxidoreductase; Provisional	97.99
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.98
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.96
PRK05693	274	short chain dehydrogenase; Provisional	97.94
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.93
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.91
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.85
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.85
PRK06182	273	short chain dehydrogenase; Validated	97.84
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.83
PRK08265	261	short chain dehydrogenase; Provisional	97.79
PRK05993	277	short chain dehydrogenase; Provisional	97.77
PLN03209	576	translocon at the inner envelope of chloroplast su	97.76
PRK05872	296	short chain dehydrogenase; Provisional	97.76
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.68
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.68
PRK12829	264	short chain dehydrogenase; Provisional	97.68
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.67
PRK07109	334	short chain dehydrogenase; Provisional	97.66
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.63
PRK06139	330	short chain dehydrogenase; Provisional	97.61
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.61
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.6
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.58
PRK06057	255	short chain dehydrogenase; Provisional	97.58
PRK07060	245	short chain dehydrogenase; Provisional	97.57
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.57
PRK07326	237	short chain dehydrogenase; Provisional	97.56
PRK07825	273	short chain dehydrogenase; Provisional	97.56
PRK06198	260	short chain dehydrogenase; Provisional	97.55
PRK08267	260	short chain dehydrogenase; Provisional	97.55
PRK08017	256	oxidoreductase; Provisional	97.53
PRK12939	250	short chain dehydrogenase; Provisional	97.52
PRK06484	520	short chain dehydrogenase; Validated	97.51
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.51
PRK07576	264	short chain dehydrogenase; Provisional	97.51
PRK06196	315	oxidoreductase; Provisional	97.5
PRK07806	248	short chain dehydrogenase; Provisional	97.49
PRK08339	263	short chain dehydrogenase; Provisional	97.49
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.49
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.46
PRK08177	225	short chain dehydrogenase; Provisional	97.46
PRK07063	260	short chain dehydrogenase; Provisional	97.46
PRK06500	249	short chain dehydrogenase; Provisional	97.45
PRK07831	262	short chain dehydrogenase; Provisional	97.44
PRK07832	272	short chain dehydrogenase; Provisional	97.43
PRK07062	265	short chain dehydrogenase; Provisional	97.43
PRK05866	293	short chain dehydrogenase; Provisional	97.42
PRK06949	258	short chain dehydrogenase; Provisional	97.42
PRK05867	253	short chain dehydrogenase; Provisional	97.41
PRK05854	313	short chain dehydrogenase; Provisional	97.38
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.38
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.37
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.37
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.37
PRK06180	277	short chain dehydrogenase; Provisional	97.36
PRK07814	263	short chain dehydrogenase; Provisional	97.35
PRK06194	287	hypothetical protein; Provisional	97.35
PRK05876	275	short chain dehydrogenase; Provisional	97.33
PRK07890	258	short chain dehydrogenase; Provisional	97.33
PRK09186	256	flagellin modification protein A; Provisional	97.32
PRK07478	254	short chain dehydrogenase; Provisional	97.32
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.32
PRK05884	223	short chain dehydrogenase; Provisional	97.31
PRK06841	255	short chain dehydrogenase; Provisional	97.31
PRK12828	239	short chain dehydrogenase; Provisional	97.31
PRK05717	255	oxidoreductase; Validated	97.31
PRK07024	257	short chain dehydrogenase; Provisional	97.29
PRK06953	222	short chain dehydrogenase; Provisional	97.28
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.27
PRK06128	300	oxidoreductase; Provisional	97.27
PLN02253	280	xanthoxin dehydrogenase	97.27
PRK07677	252	short chain dehydrogenase; Provisional	97.26
PRK06484	520	short chain dehydrogenase; Validated	97.26
PRK08643	256	acetoin reductase; Validated	97.23
PRK06482	276	short chain dehydrogenase; Provisional	97.21
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	97.21
PRK10538	248	malonic semialdehyde reductase; Provisional	97.21
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.2
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.2
PRK08589	272	short chain dehydrogenase; Validated	97.19
PRK07774	250	short chain dehydrogenase; Provisional	97.19
PRK07067	257	sorbitol dehydrogenase; Provisional	97.19
PLN02780	320	ketoreductase/ oxidoreductase	97.18
PRK06197	306	short chain dehydrogenase; Provisional	97.18
PRK09072	263	short chain dehydrogenase; Provisional	97.18
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.17
PRK09242	257	tropinone reductase; Provisional	97.17
PRK08862	227	short chain dehydrogenase; Provisional	97.17
PRK07904	253	short chain dehydrogenase; Provisional	97.16
CHL00194	317	ycf39 Ycf39; Provisional	97.16
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.16
PRK05875	276	short chain dehydrogenase; Provisional	97.16
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.16
PRK06914	280	short chain dehydrogenase; Provisional	97.15
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.15
PRK06125	259	short chain dehydrogenase; Provisional	97.15
PRK08703	239	short chain dehydrogenase; Provisional	97.14
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	97.14
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.12
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.12
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.12
PRK08263	275	short chain dehydrogenase; Provisional	97.12
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.12
PRK07985	294	oxidoreductase; Provisional	97.12
PRK12367	245	short chain dehydrogenase; Provisional	97.12
PRK06138	252	short chain dehydrogenase; Provisional	97.11
PRK08251	248	short chain dehydrogenase; Provisional	97.11
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.11
PRK06172	253	short chain dehydrogenase; Provisional	97.1
PRK07035	252	short chain dehydrogenase; Provisional	97.1
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.1
PRK06179	270	short chain dehydrogenase; Provisional	97.1
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.09
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.09
PRK06720	169	hypothetical protein; Provisional	97.09
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.08
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.08
PRK06181	263	short chain dehydrogenase; Provisional	97.08
PRK06483	236	dihydromonapterin reductase; Provisional	97.08
PRK09291	257	short chain dehydrogenase; Provisional	97.07
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	97.07
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.06
PRK07074	257	short chain dehydrogenase; Provisional	97.06
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.05
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.04
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.04
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.04
PRK07454	241	short chain dehydrogenase; Provisional	97.04
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.03
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.0
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.99
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.98
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.98
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.97
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.96
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.96
COG2910	211	Putative NADH-flavin reductase [General function p	96.95
PRK08226	263	short chain dehydrogenase; Provisional	96.94
PRK12937	245	short chain dehydrogenase; Provisional	96.93
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.93
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.92
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.92
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.92
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.92
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.91
PRK08628	258	short chain dehydrogenase; Provisional	96.91
PRK12747	252	short chain dehydrogenase; Provisional	96.91
KOG0725	270	consensus Reductases with broad range of substrate	96.91
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.89
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.88
PRK06398	258	aldose dehydrogenase; Validated	96.88
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	96.87
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	96.87
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.87
PRK07791	286	short chain dehydrogenase; Provisional	96.86
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.86
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.85
PRK06101	240	short chain dehydrogenase; Provisional	96.83
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.83
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.83
PRK06114	254	short chain dehydrogenase; Provisional	96.82
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.82
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.82
PRK06940	275	short chain dehydrogenase; Provisional	96.82
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	96.81
PRK05650	270	short chain dehydrogenase; Provisional	96.81
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.8
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.8
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.79
PRK07856	252	short chain dehydrogenase; Provisional	96.79
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.79
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	96.79
PRK07775	274	short chain dehydrogenase; Provisional	96.79
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.78
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.78
PRK08303	305	short chain dehydrogenase; Provisional	96.77
PRK04148	134	hypothetical protein; Provisional	96.77
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.77
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.73
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.72
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.71
PRK09134	258	short chain dehydrogenase; Provisional	96.7
PLN02476	278	O-methyltransferase	96.69
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.69
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.69
PRK12743	256	oxidoreductase; Provisional	96.69
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.69
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.68
PRK09135	249	pteridine reductase; Provisional	96.68
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.68
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.68
COG4122	219	Predicted O-methyltransferase [General function pr	96.67
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.67
PRK07069	251	short chain dehydrogenase; Validated	96.67
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.66
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.66
KOG1208	314	consensus Dehydrogenases with different specificit	96.65
PRK08264	238	short chain dehydrogenase; Validated	96.65
PRK08309	177	short chain dehydrogenase; Provisional	96.65
PRK12746	254	short chain dehydrogenase; Provisional	96.64
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.63
PRK07577	234	short chain dehydrogenase; Provisional	96.63
PRK08219	227	short chain dehydrogenase; Provisional	96.63
PLN00015	308	protochlorophyllide reductase	96.62
PRK06523	260	short chain dehydrogenase; Provisional	96.62
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.62
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.62
TIGR00438	188	rrmJ cell division protein FtsJ.	96.62
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.62
PRK08618	325	ornithine cyclodeaminase; Validated	96.61
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.61
PRK05599	246	hypothetical protein; Provisional	96.6
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.59
KOG1252	362	consensus Cystathionine beta-synthase and related	96.59
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.58
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.57
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.57
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.56
PRK00811	283	spermidine synthase; Provisional	96.56
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.55
PLN02366	308	spermidine synthase	96.55
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.55
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.53
PRK08278	273	short chain dehydrogenase; Provisional	96.52
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	96.52
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.5
PRK07102	243	short chain dehydrogenase; Provisional	96.49
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.48
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.47
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.47
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.47
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.47
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.46
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.46
PRK07201	657	short chain dehydrogenase; Provisional	96.46
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.45
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.44
PRK05855	582	short chain dehydrogenase; Validated	96.44
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	96.43
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.43
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.42
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.41
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.4
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.4
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.4
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.39
PRK06701	290	short chain dehydrogenase; Provisional	96.36
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	96.34
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.32
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.28
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.28
PRK01581	374	speE spermidine synthase; Validated	96.27
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.27
PLN03139	386	formate dehydrogenase; Provisional	96.26
PRK07402	196	precorrin-6B methylase; Provisional	96.26
PRK06123	248	short chain dehydrogenase; Provisional	96.26
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.24
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	96.24
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.22
PRK11207	197	tellurite resistance protein TehB; Provisional	96.22
PRK04457	262	spermidine synthase; Provisional	96.22
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	96.2
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	96.19
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.19
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.19
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.18
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	96.18
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.17
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.16
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.16
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.16
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	96.15
PRK07574	385	formate dehydrogenase; Provisional	96.15
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.12
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.11
PLN03075	296	nicotianamine synthase; Provisional	96.1
PRK13243	333	glyoxylate reductase; Reviewed	96.1
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.1
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.1
PRK12744	257	short chain dehydrogenase; Provisional	96.1
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.08
PRK07041	230	short chain dehydrogenase; Provisional	96.08
PRK07578	199	short chain dehydrogenase; Provisional	96.06
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.05
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.04
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.04
PLN00203	519	glutamyl-tRNA reductase	96.03
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	96.03
PRK12827	249	short chain dehydrogenase; Provisional	96.02
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.02
PRK07023	243	short chain dehydrogenase; Provisional	95.96
PLN02928	347	oxidoreductase family protein	95.95
PRK12824	245	acetoacetyl-CoA reductase; Provisional	95.95
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.94
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	95.94
PRK08317	241	hypothetical protein; Provisional	95.92
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	95.9
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.89
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.89
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.89
PLN00016	378	RNA-binding protein; Provisional	95.89
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	95.89
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.88
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.86
PRK08655	437	prephenate dehydrogenase; Provisional	95.86
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.85
PRK14982	340	acyl-ACP reductase; Provisional	95.83
PLN02686	367	cinnamoyl-CoA reductase	95.83
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.82
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	95.79
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.78
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.78
PRK14967	223	putative methyltransferase; Provisional	95.76
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.74
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.74
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	95.73
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.71
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.71
PLN02244	340	tocopherol O-methyltransferase	95.71
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	95.71
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.67
KOG3201	201	consensus Uncharacterized conserved protein [Funct	95.67
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.65
PLN02653	340	GDP-mannose 4,6-dehydratase	95.62
PLN02427	386	UDP-apiose/xylose synthase	95.62
PRK07340	304	ornithine cyclodeaminase; Validated	95.58
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.56
PRK00536	262	speE spermidine synthase; Provisional	95.56
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.53
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.53
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.52
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.52
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.52
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	95.51
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.5
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.5
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.5
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	95.48
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.48
PRK06924	251	short chain dehydrogenase; Provisional	95.47
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.47
PLN02214	342	cinnamoyl-CoA reductase	95.47
PRK06436	303	glycerate dehydrogenase; Provisional	95.47
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.46
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.46
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.46
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.45
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	95.42
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.41
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.4
PRK12480	330	D-lactate dehydrogenase; Provisional	95.38
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.37
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	95.37
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.35
COG1028	251	FabG Dehydrogenases with different specificities (	95.34
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	95.34
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.34

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=5.7e-54  Score=378.19  Aligned_cols=306  Identities=20%  Similarity=0.239  Sum_probs=271.7

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      .+|||+.+.++.       +++++++++.    |+|+++||+|||+++|+|++|+|..+|.+... ..|+++||  |..|
T Consensus         2 ~~mkA~~~~~~~-------~pl~i~e~~~----p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~-~~P~ipGH--EivG   67 (339)
T COG1064           2 MTMKAAVLKKFG-------QPLEIEEVPV----PEPGPGEVLIKVEACGVCHTDLHVAKGDWPVP-KLPLIPGH--EIVG   67 (339)
T ss_pred             cceEEEEEccCC-------CCceEEeccC----CCCCCCeEEEEEEEEeecchhhhhhcCCCCCC-CCCccCCc--ceEE
Confidence            468999999874       4489999866    89999999999999999999999999866544 34555554  8999


Q ss_pred             EEEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccc
Q 042784           91 IARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPD  140 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~  140 (356)
                      +|.++|++|++||+||||.++                              +|+|+||+++++.+++++   |++++++.
T Consensus        68 ~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~i---P~~~d~~~  144 (339)
T COG1064          68 TVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKI---PEGLDLAE  144 (339)
T ss_pred             EEEEecCCCccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEEC---CCCCChhh
Confidence            999999999999999999972                              399999999999998665   99999999


Q ss_pred             cccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCCh
Q 042784          141 YLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSE  220 (356)
Q Consensus       141 ~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~  220 (356)
                       ||.+.|++.|+|++|. ..+++||++|+|+|+ |++|.+++|+||++|++|+++++++++.++++ +||++++++.++ 
T Consensus       145 -aApllCaGiT~y~alk-~~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~-~lGAd~~i~~~~-  219 (339)
T COG1064         145 -AAPLLCAGITTYRALK-KANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAK-KLGADHVINSSD-  219 (339)
T ss_pred             -hhhhhcCeeeEeeehh-hcCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH-HhCCcEEEEcCC-
Confidence             8999999999999997 599999999999998 89999999999999999999999999999999 999999999875 


Q ss_pred             hhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc-ccccccccccchhhhhhhhccceEEEEEeccc
Q 042784          221 MSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS-QYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS  299 (356)
Q Consensus       221 ~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (356)
                      .+..+.+++.    +|++||+++...++.+++.|+++|+++.+|... .       +....+...++.+++++.|+..++
T Consensus       220 ~~~~~~~~~~----~d~ii~tv~~~~~~~~l~~l~~~G~~v~vG~~~~~-------~~~~~~~~~li~~~~~i~GS~~g~  288 (339)
T COG1064         220 SDALEAVKEI----ADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGGG-------PIPLLPAFLLILKEISIVGSLVGT  288 (339)
T ss_pred             chhhHHhHhh----CcEEEECCChhhHHHHHHHHhcCCEEEEECCCCCc-------ccCCCCHHHhhhcCeEEEEEecCC
Confidence            6777777663    999999999669999999999999999999974 2       123346677889999999998887


Q ss_pred             ccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          300 HMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      .     .++++++++..+|+++|.+...++++|+++||+.|.+++..|+.||++.
T Consensus       289 ~-----~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~  338 (339)
T COG1064         289 R-----ADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDMS  338 (339)
T ss_pred             H-----HHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence            4     5689999999999999999879999999999999999999999999875

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=6.9e-52  Score=374.08  Aligned_cols=318  Identities=27%  Similarity=0.369  Sum_probs=270.0

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |+++.+..+     ++++.+++++++.    |.|+++||||||+++++|+.|...+.|.  .....++|...|.|++|+|
T Consensus         1 mka~~~~~~-----g~~~~l~~~e~~~----P~p~~geVlVrV~a~gvN~~D~~~r~G~--~~~~~~~P~i~G~d~aG~V   69 (326)
T COG0604           1 MKAVVVEEF-----GGPEVLKVVEVPE----PEPGPGEVLVRVKAAGVNPIDVLVRQGL--APPVRPLPFIPGSEAAGVV   69 (326)
T ss_pred             CeEEEEecc-----CCCceeEEEecCC----CCCCCCeEEEEEEEeecChHHHHhccCC--CCCCCCCCCcccceeEEEE
Confidence            567777765     4556688888855    8899999999999999999999999975  2223345666667999999


Q ss_pred             EEeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      +++|++|++|++||||+..     .|+|+||+++|++.++++   |+++|+++ ||+++++++|||+++....++++|++
T Consensus        70 ~avG~~V~~~~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~---P~~ls~~e-AAal~~~~~TA~~~l~~~~~l~~g~~  145 (326)
T COG0604          70 VAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPL---PDGLSFEE-AAALPLAGLTAWLALFDRAGLKPGET  145 (326)
T ss_pred             EEeCCCCCCcCCCCEEEEccCCCCCCcceeEEEecHHHceeC---CCCCCHHH-HHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence            9999999999999999943     489999999999999666   99999999 89999999999999999899999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC-CceEEEECCchhh
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN-GIDVYLDNVGGKM  246 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~~  246 (356)
                      |||+||+|++|.+++||||++|+++++++.++++.++++ ++|++++++|++ .++.+.+++++++ ++|+|+|++|++.
T Consensus       146 VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~-~lGAd~vi~y~~-~~~~~~v~~~t~g~gvDvv~D~vG~~~  223 (326)
T COG0604         146 VLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK-ELGADHVINYRE-EDFVEQVRELTGGKGVDVVLDTVGGDT  223 (326)
T ss_pred             EEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH-hcCCCEEEcCCc-ccHHHHHHHHcCCCCceEEEECCCHHH
Confidence            999999999999999999999987777777888888888 999999999998 7799999999966 8999999999999


Q ss_pred             HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc-cchHHHHHHHHHHHHHcCCeeeeee
Q 042784          247 LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKEGKIRSKHV  325 (356)
Q Consensus       247 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~g~i~~~~~  325 (356)
                      +..++++|+++|+++.+|..++ .     .....+...++.+.++..+...... .+...+.++++.+++.+|.+++.++
T Consensus       224 ~~~~l~~l~~~G~lv~ig~~~g-~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~  297 (326)
T COG0604         224 FAASLAALAPGGRLVSIGALSG-G-----PPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVID  297 (326)
T ss_pred             HHHHHHHhccCCEEEEEecCCC-C-----CccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcceec
Confidence            9999999999999999999773 1     1122346667778888888766532 2445678899999999999999999


Q ss_pred             EEeChhhHHHHHHHHHc-CCCcceEEEEe
Q 042784          326 IYYGVESFLESLGSLFS-SSNIGKVVIQV  353 (356)
Q Consensus       326 ~~~~~~~~~~a~~~~~~-~~~~gkvvi~~  353 (356)
                      .+|||++..++..+... ++..||+|+++
T Consensus       298 ~~~~l~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         298 RVYPLAEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             cEechhhhHHHHHHHHcccCCcceEEEeC
Confidence            99999996555554433 58899999974

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.5e-50  Score=331.46  Aligned_cols=318  Identities=18%  Similarity=0.242  Sum_probs=275.0

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      .+-+++..+     ++.+.+++++.|+    |+|.|+|++||-.|+|+|..|.-.+.|-+.   ..+.|+.+|.|.+|+|
T Consensus         9 ~k~i~v~e~-----Ggydvlk~ed~pv----~~papgel~iknka~GlNfid~y~RkGlY~---~~plPytpGmEaaGvV   76 (336)
T KOG1197|consen    9 LKCIVVTEF-----GGYDVLKLEDRPV----PPPAPGELTIKNKACGLNFIDLYFRKGLYD---PAPLPYTPGMEAAGVV   76 (336)
T ss_pred             heEEEEecc-----CCcceEEEeeecC----CCCCCCceEEeehhcCccHHHHHHhccccC---CCCCCcCCCcccceEE
Confidence            556666665     6789999999977    889999999999999999999998886543   4455555556999999


Q ss_pred             EEeccCCCCCCCCCEEEe--ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784           93 RVIRSKDSKYSDGDIVLR--AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~--~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      +.+|++++++++||||++  .+|.|+|+..+|...++..   |+.++++. ||++...++|||..+++..++++|++|||
T Consensus        77 vAvG~gvtdrkvGDrVayl~~~g~yaee~~vP~~kv~~v---pe~i~~k~-aaa~llq~lTAy~ll~e~y~vkpGhtVlv  152 (336)
T KOG1197|consen   77 VAVGEGVTDRKVGDRVAYLNPFGAYAEEVTVPSVKVFKV---PEAITLKE-AAALLLQGLTAYMLLFEAYNVKPGHTVLV  152 (336)
T ss_pred             EEecCCccccccccEEEEeccchhhheeccccceeeccC---CcccCHHH-HHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            999999999999999995  4699999999999888554   99999999 78999999999999999999999999999


Q ss_pred             EcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCchhhHHH
Q 042784          171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKMLEA  249 (356)
Q Consensus       171 ~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~~~~  249 (356)
                      |.|+|++|++++|++++.|++++++..+.++++.++ +.|++++++|+. .|+..++.++| |+|+|+++|.+|.+.+..
T Consensus       153 haAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ak-enG~~h~I~y~~-eD~v~~V~kiTngKGVd~vyDsvG~dt~~~  230 (336)
T KOG1197|consen  153 HAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAK-ENGAEHPIDYST-EDYVDEVKKITNGKGVDAVYDSVGKDTFAK  230 (336)
T ss_pred             EeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHH-hcCCcceeeccc-hhHHHHHHhccCCCCceeeeccccchhhHH
Confidence            999999999999999999999999999999999999 899999999999 89999999999 679999999999999999


Q ss_pred             HHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc---hHHHHHHHHHHHHHcCCeeeeeeE
Q 042784          250 VLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD---RFADFTVEMESYIKEGKIRSKHVI  326 (356)
Q Consensus       250 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~g~i~~~~~~  326 (356)
                      .+.+|++.|.+|.+|..++..       .+.++..+-.+++++...++..+..   .......+++.++.+|.+++.|++
T Consensus       231 sl~~Lk~~G~mVSfG~asgl~-------~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~  303 (336)
T KOG1197|consen  231 SLAALKPMGKMVSFGNASGLI-------DPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDH  303 (336)
T ss_pred             HHHHhccCceEEEeccccCCC-------CCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeee
Confidence            999999999999999987622       2233444445666654443333322   333456788899999999999999


Q ss_pred             EeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          327 YYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       327 ~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +|||+++.+|+.++++++..||+++.+.+
T Consensus       304 ~ypls~vadA~~diesrktvGkvlLlp~~  332 (336)
T KOG1197|consen  304 VYPLSKVADAHADIESRKTVGKVLLLPGP  332 (336)
T ss_pred             ecchHHHHHHHHHHHhhhccceEEEeCCc
Confidence            99999999999999999999999998765

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-47  Score=351.53  Aligned_cols=339  Identities=40%  Similarity=0.718  Sum_probs=277.4

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEe-eccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSA-SVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      .++|.|.++.. +++.+.+++|++++. +++.|. +++++||||||.++++||+|+..+.+.. ....+|+.+|..++++
T Consensus         7 ~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~-~~~~gevlVkv~a~~inp~~~~~~~~~~-~~~~~p~~~G~~~~~~   83 (348)
T PLN03154          7 VENKQVILKNY-IDGIPKETDMEVKLGNKIELKA-PKGSGAFLVKNLYLSCDPYMRGRMRDFH-DSYLPPFVPGQRIEGF   83 (348)
T ss_pred             ccceEEEEecC-CCCCCCcccEEEEeecccCCCC-CCCCCeEEEEEEEEccCHHHHHhhhccC-CCCCCCcCCCCeeEee
Confidence            34688998876 577888899999995 243332 3579999999999999999887544311 2223456677667889


Q ss_pred             EEEEEeccCCCCCCCCCEEEeccCCeeeEEeecCCc-ccccCCCCCCCCcc-ccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           90 GIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDL-LTRKLDPASGIPFP-DYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~-~~~~i~~P~~~s~~-~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      |+|..+|+++++|++||+|+ ++|+|+||.+++.+. .+.+++.|++++++ + +|+++++++|||+++.+.+++++|++
T Consensus        84 G~v~~vg~~v~~~~~Gd~V~-~~~~~aey~~v~~~~~~~~~~~~P~~~~~~~~-aa~l~~~~~TA~~al~~~~~~~~g~~  161 (348)
T PLN03154         84 GVSKVVDSDDPNFKPGDLIS-GITGWEEYSLIRSSDNQLRKIQLQDDIPLSYH-LGLLGMAGFTAYAGFYEVCSPKKGDS  161 (348)
T ss_pred             EEEEEEecCCCCCCCCCEEE-ecCCcEEEEEEeccccceEEccCcCCCCHHHH-HHHcccHHHHHHHHHHHhcCCCCCCE
Confidence            99999999999999999999 999999999999854 22334448999986 5 78999999999999987889999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhH
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKML  247 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~  247 (356)
                      |||+|++|++|++++|+||.+|++|++++.++++.+.+++++|++.++++++..++.+.+++.+++++|++|||+|+..+
T Consensus       162 VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~~~  241 (348)
T PLN03154        162 VFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGDML  241 (348)
T ss_pred             EEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCCHHHH
Confidence            99999999999999999999999999999899999998757999999998752467888888877789999999999999


Q ss_pred             HHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEE
Q 042784          248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIY  327 (356)
Q Consensus       248 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~  327 (356)
                      ..++++++++|+++.+|...+...  ..+....+...++.+++++.++....+.+...+.++++++++.+|++++.++.+
T Consensus       242 ~~~~~~l~~~G~iv~~G~~~~~~~--~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~~  319 (348)
T PLN03154        242 DAALLNMKIHGRIAVCGMVSLNSL--SASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMS  319 (348)
T ss_pred             HHHHHHhccCCEEEEECccccCCC--CCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCceecc
Confidence            999999999999999997643210  000011234556788999998876555444557789999999999999988889


Q ss_pred             eChhhHHHHHHHHHcCCCcceEEEEecCC
Q 042784          328 YGVESFLESLGSLFSSSNIGKVVIQVKAP  356 (356)
Q Consensus       328 ~~~~~~~~a~~~~~~~~~~gkvvi~~~~~  356 (356)
                      |+|+++++||+.+.+++..||+|++++++
T Consensus       320 ~~L~~~~~A~~~l~~g~~~GKvVl~~~~~  348 (348)
T PLN03154        320 EGLESAPAALVGLFSGKNVGKQVIRVAKE  348 (348)
T ss_pred             cCHHHHHHHHHHHHcCCCCceEEEEecCC
Confidence            99999999999999999999999998764

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=1.5e-46  Score=344.92  Aligned_cols=334  Identities=48%  Similarity=0.840  Sum_probs=274.5

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      .|.+.++++...+ +.++.|++++.+++.|.|+|+++||||||+++++||.|++...|.......+|+++|+..++.|++
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~   81 (338)
T cd08295           3 NKQVILKAYVTGF-PKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVA   81 (338)
T ss_pred             ceEEEEecCCCCC-CCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEE
Confidence            5678888887544 447889999998877778999999999999999999999998874322134566777766778888


Q ss_pred             EEeccCCCCCCCCCEEEeccCCeeeEEeecC-CcccccCCCCCCCCcc-ccccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784           93 RVIRSKDSKYSDGDIVLRAFLPVAEYSLLPC-DLLTRKLDPASGIPFP-DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~-~~~~~~i~~P~~~s~~-~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      ..+|+++++|++||+|+ ++|+|+||+++++ +.+++ +| |++++++ + +++++++++|||+++.+.+++++|++|||
T Consensus        82 ~~v~~~v~~~~vGd~V~-~~g~~aey~~v~~~~~~~~-lp-~~~~~~~~~-aa~l~~~~~tA~~~l~~~~~~~~g~~VlI  157 (338)
T cd08295          82 KVVDSGNPDFKVGDLVW-GFTGWEEYSLIPRGQDLRK-ID-HTDVPLSYY-LGLLGMPGLTAYAGFYEVCKPKKGETVFV  157 (338)
T ss_pred             EEEecCCCCCCCCCEEE-ecCCceeEEEecchhceee-cC-CCCCCHHHH-HHhcccHHHHHHHHHHHhcCCCCCCEEEE
Confidence            88999999999999999 9999999999999 66644 32 4678876 6 78999999999999987889999999999


Q ss_pred             EcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHH
Q 042784          171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAV  250 (356)
Q Consensus       171 ~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~  250 (356)
                      +|++|++|++++|+||.+|++|+++++++++.+++++.+|+++++++.+..++.+.+++.+++++|++||++|+..+..+
T Consensus       158 ~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~~~~~~  237 (338)
T cd08295         158 SAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAV  237 (338)
T ss_pred             ecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHHHHHHH
Confidence            99999999999999999999999999999999999933999999997643478888888877789999999999999999


Q ss_pred             HHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeCh
Q 042784          251 LNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGV  330 (356)
Q Consensus       251 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~  330 (356)
                      +++++++|+++.+|.......  .......+...++.+++++.++..........+.++++++++.+|.+++.+...|++
T Consensus       238 ~~~l~~~G~iv~~G~~~~~~~--~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l  315 (338)
T cd08295         238 LLNMNLHGRIAACGMISQYNL--EWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIADGL  315 (338)
T ss_pred             HHHhccCcEEEEecccccCCC--CCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceeecccCH
Confidence            999999999999986543110  000011223455667788887665544333456788899999999999887778999


Q ss_pred             hhHHHHHHHHHcCCCcceEEEEe
Q 042784          331 ESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       331 ~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +++++|++.+.+++..||+|+++
T Consensus       316 ~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         316 ESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEC
Confidence            99999999999999999999874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.1e-47  Score=323.93  Aligned_cols=312  Identities=19%  Similarity=0.190  Sum_probs=263.6

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      ..|++.++...        .++++++.++    |++ .|+||+|++.++|||.+|.|.+.....+.+..+.|+..|+|.+
T Consensus         3 ~~~~A~vl~g~--------~di~i~~~p~----p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEss   70 (354)
T KOG0024|consen    3 ADNLALVLRGK--------GDIRIEQRPI----PTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESS   70 (354)
T ss_pred             cccceeEEEcc--------CceeEeeCCC----CCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccc
Confidence            35778887744        7899997654    555 9999999999999999999999976677765556666667999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCcc
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFP  139 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~  139 (356)
                      |+|.++|++|++||+||||++-                              .|++++|++.+++.|++.   ||++|++
T Consensus        71 GiV~evG~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KL---Pd~vs~e  147 (354)
T KOG0024|consen   71 GIVEEVGDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKL---PDNVSFE  147 (354)
T ss_pred             cchhhhcccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeC---CCCCchh
Confidence            9999999999999999999961                              289999999999999555   9999999


Q ss_pred             ccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecC
Q 042784          140 DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYN  218 (356)
Q Consensus       140 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~  218 (356)
                      +  .+|..+++++|||.+ ++++++|++|||+|| |++|+++...||++|+ +|++++..+.|+++++ +||++.+.+..
T Consensus       148 e--GAl~ePLsV~~HAcr-~~~vk~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak-~~Ga~~~~~~~  222 (354)
T KOG0024|consen  148 E--GALIEPLSVGVHACR-RAGVKKGSKVLVLGA-GPIGLLTGLVAKAMGASDVVITDLVANRLELAK-KFGATVTDPSS  222 (354)
T ss_pred             h--cccccchhhhhhhhh-hcCcccCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHH-HhCCeEEeecc
Confidence            8  789999999999996 799999999999998 9999999999999999 9999999999999999 79998666544


Q ss_pred             C---hhhHHHHHHHHCC-CCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEE
Q 042784          219 S---EMSFDAALTKYFP-NGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKME  293 (356)
Q Consensus       219 ~---~~~~~~~i~~~~~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (356)
                      .   .+.+.+.+.+..+ ..+|+.|||+|.. .++.++.+++.+|+++++|+...        ....+......|++.+.
T Consensus       223 ~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~--------~~~fpi~~v~~kE~~~~  294 (354)
T KOG0024|consen  223 HKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAE--------EIQFPIIDVALKEVDLR  294 (354)
T ss_pred             ccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCC--------ccccChhhhhhheeeee
Confidence            3   2455666666655 3699999999986 89999999999999999998654        23456677788999999


Q ss_pred             EEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcc-eEEEEecC
Q 042784          294 GFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIG-KVVIQVKA  355 (356)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~g-kvvi~~~~  355 (356)
                      |...+..     ..+..+++++++|++.  +.+++.|+++++.+||+.+++++... |+++..++
T Consensus       295 g~fry~~-----~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~  354 (354)
T KOG0024|consen  295 GSFRYCN-----GDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE  354 (354)
T ss_pred             eeeeecc-----ccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence            8765432     3578899999999875  68999999999999999998887644 99887653

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.2e-46  Score=319.14  Aligned_cols=312  Identities=18%  Similarity=0.188  Sum_probs=266.1

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      .+.++|..+...     +...+++.++++    |+++++||+|||++||||++|+|...|.| +.  ..+|+..|+|+.|
T Consensus         8 ~k~~g~~~~~~~-----G~l~p~~~~~~~----~~~g~~dv~vkI~~cGIChsDlH~~~gdw-g~--s~~PlV~GHEiaG   75 (360)
T KOG0023|consen    8 EKQFGWAARDPS-----GVLSPEVFSFPV----REPGENDVLVKIEYCGVCHSDLHAWKGDW-GL--SKYPLVPGHEIAG   75 (360)
T ss_pred             hhhEEEEEECCC-----CCCCcceeEcCC----CCCCCCcEEEEEEEEeccchhHHHhhccC-Cc--ccCCccCCceeeE
Confidence            356788888653     444666677754    89999999999999999999999999855 33  4455555569999


Q ss_pred             EEEEeccCCCCCCCCCEEEec-------------------------------------cCCeeeEEeecCCcccccCCCC
Q 042784           91 IARVIRSKDSKYSDGDIVLRA-------------------------------------FLPVAEYSLLPCDLLTRKLDPA  133 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~-------------------------------------~g~~a~~~~v~~~~~~~~i~~P  133 (356)
                      +|+++|++|++||+||||-++                                     .|+||+|+++++.+++++   |
T Consensus        76 ~VvkvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kI---P  152 (360)
T KOG0023|consen   76 VVVKVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKI---P  152 (360)
T ss_pred             EEEEECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEEC---C
Confidence            999999999999999999862                                     166999999999998665   9


Q ss_pred             CCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc
Q 042784          134 SGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD  213 (356)
Q Consensus       134 ~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~  213 (356)
                      ++++++. ||.|.|++.|+|.+|. ..++.||+++.|.|+ |++|.+++|+||++|.+|+++++++++.+.+-+.||++.
T Consensus       153 ~~~pl~~-aAPlLCaGITvYspLk-~~g~~pG~~vgI~Gl-GGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~  229 (360)
T KOG0023|consen  153 ENLPLAS-AAPLLCAGITVYSPLK-RSGLGPGKWVGIVGL-GGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV  229 (360)
T ss_pred             CCCChhh-ccchhhcceEEeehhH-HcCCCCCcEEEEecC-cccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce
Confidence            9999999 8999999999999997 577899999999998 679999999999999999999998855555544899999


Q ss_pred             eeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEE
Q 042784          214 AFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKME  293 (356)
Q Consensus       214 v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (356)
                      .++..+++++.+.+.+.+++++|-|... ..-.++.++.+++++|++|++|.+..        ....+..++..+.+.+.
T Consensus       230 fv~~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p~~--------~~~~~~~~lil~~~~I~  300 (360)
T KOG0023|consen  230 FVDSTEDPDIMKAIMKTTDGGIDTVSNL-AEHALEPLLGLLKVNGTLVLVGLPEK--------PLKLDTFPLILGRKSIK  300 (360)
T ss_pred             eEEecCCHHHHHHHHHhhcCcceeeeec-cccchHHHHHHhhcCCEEEEEeCcCC--------cccccchhhhcccEEEE
Confidence            9998855899999999887777777766 44588999999999999999999764        23456677788899999


Q ss_pred             EEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          294 GFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      |+.+++.     ...++++++..++.+++.+. ..+++++++||+.|.+++.++|.|++++.
T Consensus       301 GS~vG~~-----ket~E~Ldf~a~~~ik~~IE-~v~~~~v~~a~erm~kgdV~yRfVvD~s~  356 (360)
T KOG0023|consen  301 GSIVGSR-----KETQEALDFVARGLIKSPIE-LVKLSEVNEAYERMEKGDVRYRFVVDVSK  356 (360)
T ss_pred             eeccccH-----HHHHHHHHHHHcCCCcCceE-EEehhHHHHHHHHHHhcCeeEEEEEEccc
Confidence            9999875     45689999999999999986 89999999999999999999999999864

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=3.8e-46  Score=321.43  Aligned_cols=310  Identities=17%  Similarity=0.189  Sum_probs=264.9

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ++++.+..+..       ++|+++++++    ++|+++|||||+.|+|+|++|.+.++|..    +.++|...|+|+.|+
T Consensus         2 k~~aAV~~~~~-------~Pl~i~ei~l----~~P~~gEVlVri~AtGVCHTD~~~~~G~~----p~~~P~vLGHEgAGi   66 (366)
T COG1062           2 KTRAAVAREAG-------KPLEIEEVDL----DPPRAGEVLVRITATGVCHTDAHTLSGDD----PEGFPAVLGHEGAGI   66 (366)
T ss_pred             CceEeeeecCC-------CCeEEEEEec----CCCCCCeEEEEEEEeeccccchhhhcCCC----CCCCceecccccccE
Confidence            35666666543       8999999999    88999999999999999999999998643    444666666799999


Q ss_pred             EEEeccCCCCCCCCCEEEec------------------------------------------------c--CCeeeEEee
Q 042784           92 ARVIRSKDSKYSDGDIVLRA------------------------------------------------F--LPVAEYSLL  121 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~------------------------------------------------~--g~~a~~~~v  121 (356)
                      |++||++|..+|+||.|+..                                                +  ++|+||.++
T Consensus        67 Ve~VG~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv  146 (366)
T COG1062          67 VEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVV  146 (366)
T ss_pred             EEEecCCccccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheee
Confidence            99999999999999999941                                                1  489999999


Q ss_pred             cCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChH
Q 042784          122 PCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDD  200 (356)
Q Consensus       122 ~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~  200 (356)
                      ++.++++ +  ++..+++. ++.+.|...|.+.++.+.+++++|++|.|.|- |++|++++|-|+..|+ +|++++..++
T Consensus       147 ~~~s~vk-i--~~~~p~~~-a~llGCgV~TG~Gav~nta~v~~G~tvaV~Gl-GgVGlaaI~gA~~agA~~IiAvD~~~~  221 (366)
T COG1062         147 HEISLVK-I--DPDAPLEK-ACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGL-GGVGLAAIQGAKAAGAGRIIAVDINPE  221 (366)
T ss_pred             cccceEE-C--CCCCCccc-eEEEeeeeccChHHhhhcccCCCCCeEEEEec-cHhHHHHHHHHHHcCCceEEEEeCCHH
Confidence            9988855 4  67789988 89999999999999999999999999999996 9999999999999999 9999999999


Q ss_pred             HHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccch
Q 042784          201 NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGV  279 (356)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  279 (356)
                      |+++++ +||+.+++|.++..++.+.+.++|++|+|++|||+|+ ..+++++.++.++|+.+.+|......      ...
T Consensus       222 Kl~~A~-~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~------~i~  294 (366)
T COG1062         222 KLELAK-KFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQ------EIS  294 (366)
T ss_pred             HHHHHH-hcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCc------eee
Confidence            999999 9999999999873479999999998899999999998 58999999999999999999876522      122


Q ss_pred             hhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          280 RNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      .+...+... .+++|+..+....  +.++..+++++.+|+|.  ..+++.++|+|+++||++|.+++.. |-||+
T Consensus       295 ~~~~~lv~g-r~~~Gs~~G~~~p--~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi~  365 (366)
T COG1062         295 TRPFQLVTG-RVWKGSAFGGARP--RSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVIR  365 (366)
T ss_pred             cChHHeecc-ceEEEEeecCCcc--ccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEec
Confidence            344444444 7888887776543  25678899999999876  4788899999999999999998875 55554

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=2.8e-45  Score=310.16  Aligned_cols=330  Identities=39%  Similarity=0.697  Sum_probs=286.8

Q ss_pred             eeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEE
Q 042784           14 KEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIAR   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~   93 (356)
                      +.|++. ..+.+.+.+++|++++.++    |+|+++|||||+.+.+++|+.+..++-  ...+.+|+.+|-...+-++..
T Consensus        10 ~~~~la-~rP~g~p~~d~F~lee~~v----p~p~~GqvLl~~~ylS~DPymRgrm~d--~~SY~~P~~lG~~~~gg~V~~   82 (340)
T COG2130          10 RRIVLA-SRPEGAPVPDDFRLEEVDV----PEPGEGQVLLRTLYLSLDPYMRGRMSD--APSYAPPVELGEVMVGGTVAK   82 (340)
T ss_pred             heeeec-cCCCCCCCCCCceeEeccC----CCCCcCceEEEEEEeccCHHHeecccC--CcccCCCcCCCceeECCeeEE
Confidence            445544 4688888999999999988    788999999999999999988877763  236788999998777666667


Q ss_pred             EeccCCCCCCCCCEEEeccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcC
Q 042784           94 VIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAA  173 (356)
Q Consensus        94 ~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~  173 (356)
                      ++.|+.+.|++||.|. +..+|+||.+++.+.+ ++++ |....+...+..|..++.|||.+|.++++.++|++|+|.+|
T Consensus        83 Vv~S~~~~f~~GD~V~-~~~GWq~y~i~~~~~l-~Kvd-~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaA  159 (340)
T COG2130          83 VVASNHPGFQPGDIVV-GVSGWQEYAISDGEGL-RKLD-PSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAA  159 (340)
T ss_pred             EEecCCCCCCCCCEEE-ecccceEEEeechhhc-eecC-CCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEec
Confidence            7788999999999999 9999999999999876 6666 44333333357899999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHh
Q 042784          174 AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNH  253 (356)
Q Consensus       174 ~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~  253 (356)
                      +|.+|..+.|+||..|++|+.++.+++|..++++.+|.+.++||++ .++.+.+.+..++|+|+.||++|++.+...+..
T Consensus       160 aGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~-~d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~  238 (340)
T COG2130         160 AGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKA-EDFAQALKEACPKGIDVYFENVGGEVLDAVLPL  238 (340)
T ss_pred             ccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCc-ccHHHHHHHHCCCCeEEEEEcCCchHHHHHHHh
Confidence            9999999999999999999999999999999997799999999999 799999999999999999999999999999999


Q ss_pred             cccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-chHHHHHHHHHHHHHcCCeeeeeeEEeChhh
Q 042784          254 VNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEGKIRSKHVIYYGVES  332 (356)
Q Consensus       254 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~  332 (356)
                      |+..+++..||..+..+.. ..+..+..+..++.+.+++.|+-+.+.+ .+.++.++++-+|+.+|+|+...+.+-.||+
T Consensus       239 ln~~aRi~~CG~IS~YN~~-~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEn  317 (340)
T COG2130         239 LNLFARIPVCGAISQYNAP-ELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLEN  317 (340)
T ss_pred             hccccceeeeeehhhcCCC-CCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehhhhhc
Confidence            9999999999987764422 2233445666778889999999885544 4455999999999999999999988888999


Q ss_pred             HHHHHHHHHcCCCcceEEEEecC
Q 042784          333 FLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       333 ~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +++||.-+.+++.+||+|+++.+
T Consensus       318 aP~Af~gLl~G~N~GK~vvKv~~  340 (340)
T COG2130         318 APEAFIGLLSGKNFGKLVVKVAD  340 (340)
T ss_pred             cHHHHHHHhcCCccceEEEEecC
Confidence            99999999999999999999864

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1.2e-44  Score=336.07  Aligned_cols=316  Identities=16%  Similarity=0.161  Sum_probs=264.1

Q ss_pred             eeeEEEeccc-CCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYA-SDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      |||+++++++ +.+++.++.++++++++    |+|+++||+|||.+++||++|++.+.|...  ...|..+  |+|++|+
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~----P~~~~~evlV~v~~~gi~~~D~~~~~g~~~--~~~p~i~--GhE~~G~   72 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVEL----DPPGPGEVLVKIAAAGLCHSDLSVINGDRP--RPLPMAL--GHEAAGV   72 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeec----CCCCCCeEEEEEEEEeeCccchHhhcCCCC--CCCCccC--CccceeE
Confidence            6889999876 23344578899999866    778999999999999999999999887432  1233444  4599999


Q ss_pred             EEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEee
Q 042784           92 ARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSLL  121 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~v  121 (356)
                      |+++|++++++++||||++.                                                  .|+|+||+.+
T Consensus        73 V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v  152 (371)
T cd08281          73 VVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVV  152 (371)
T ss_pred             EEEeCCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEe
Confidence            99999999999999999831                                                  1689999999


Q ss_pred             cCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChH
Q 042784          122 PCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDD  200 (356)
Q Consensus       122 ~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~  200 (356)
                      +++.++++   |+++++++ |+.+.+++.|||+++...+++++|++|||+|+ |++|++++|+||..|+ +|++++.+++
T Consensus       153 ~~~~~~~l---P~~l~~~~-aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~  227 (371)
T cd08281         153 SRRSVVKI---DKDVPLEI-AALFGCAVLTGVGAVVNTAGVRPGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNED  227 (371)
T ss_pred             cccceEEC---CCCCChHH-hhhhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence            99888555   99999998 78888999999999877788999999999985 9999999999999999 7999999999


Q ss_pred             HHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccch
Q 042784          201 NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGV  279 (356)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  279 (356)
                      ++++++ ++|+++++++.+ .++.+.+++++++++|++|||+|. ..+..++++++++|+++.+|......      ...
T Consensus       228 r~~~a~-~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~------~~~  299 (371)
T cd08281         228 KLALAR-ELGATATVNAGD-PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEA------RLS  299 (371)
T ss_pred             HHHHHH-HcCCceEeCCCc-hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCc------eee
Confidence            999998 999999999876 678888888876689999999986 58899999999999999998754311      112


Q ss_pred             hhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          280 RNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      .+...++.+++++.++...++.  ..+.++++++++.+|++++  .++++|+|+|+++||+.+.+++..+|+|+
T Consensus       300 ~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~  371 (371)
T cd08281         300 VPALSLVAEERTLKGSYMGSCV--PRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL  371 (371)
T ss_pred             ecHHHHhhcCCEEEEEecCCCC--hHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence            3445678899999998766542  1346788899999999975  57889999999999999999998888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=1.1e-42  Score=320.51  Aligned_cols=332  Identities=33%  Similarity=0.615  Sum_probs=254.5

Q ss_pred             eeeEEEecccC-CCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCC-CccCCCccCceeeee
Q 042784           13 SKEWYISAYAS-DGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDG-LYFPQFNLNQVILAF   89 (356)
Q Consensus        13 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~~~~~~   89 (356)
                      .|.++++...+ .+.+.++.+++++.+.    |+| +++||||||.++|||+.|+...... .+ .+..+++...|+|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~evlV~v~a~gin~~d~~~~~~~-~~~~~~~~~~~~~G~e~~   77 (345)
T cd08293           3 NKRVVLNSRPGKNGNPVAENFRVEECTL----PDELNEGQVLVRTLYLSVDPYMRCRMNED-TGTDYLAPWQLSQVLDGG   77 (345)
T ss_pred             ceEEEEecccCCCCCCCccceEEEeccC----CCCCCCCeEEEEEEEEecCHHHHhhcccc-cccccCCCccCCCceEee
Confidence            45566665532 6777889999998866    666 4999999999999999986433211 11 112234455566999


Q ss_pred             EEEEEeccCCCCCCCCCEEEeccCCeeeEEeecCCcccccCCCCCCCCccc---cccccCchhhhHHHHHHHhCCCCCC-
Q 042784           90 GIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPD---YLSSLGIPGFAAWVGIEVLGQPKSG-  165 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~---~aa~l~~~~~ta~~~l~~~~~~~~g-  165 (356)
                      |+|+++|+++++|++||+|+...++|+||++++++.++++   |++++..+   .+++++.+++|||+++.+.+++++| 
T Consensus        78 G~V~~vG~~v~~~~~Gd~V~~~~~~~ae~~~v~~~~~~~i---P~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~  154 (345)
T cd08293          78 GVGVVEESKHQKFAVGDIVTSFNWPWQTYAVLDGSSLEKV---DPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGA  154 (345)
T ss_pred             EEEEEeccCCCCCCCCCEEEecCCCceeEEEecHHHeEEc---CccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCC
Confidence            9999999999999999999933368999999999888555   87754332   0357788999999999878888877 


Q ss_pred             -CEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 -SNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 -~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                       ++|||+|++|++|++++|+||.+|+ +|+++++++++.+.+++++|+++++++++ .++.+.+++++++++|++|||+|
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~~~~gvd~vid~~g  233 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT-DNVAERLRELCPEGVDVYFDNVG  233 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHCCCCceEEEECCC
Confidence             9999999999999999999999999 89999999999999984599999999886 67888888888778999999999


Q ss_pred             hhhHHHHHHhcccCCEEEEEecccccccccccccch-hhhhh-hhccceEEEEEecccccchHHHHHHHHHHHHHcCCee
Q 042784          244 GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGV-RNLLN-MIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       244 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      +..+..++++++++|+++.+|............... ..... ...+++++..+..........+.++++++++.+|.++
T Consensus       234 ~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~  313 (345)
T cd08293         234 GEISDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLK  313 (345)
T ss_pred             cHHHHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCcc
Confidence            988899999999999999998643211000000000 00111 1234555554443333333456788899999999998


Q ss_pred             eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          322 SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       322 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +.+...++++++++|++.+.+++..||+|+++
T Consensus       314 ~~~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         314 VKETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             ceeEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            87666789999999999999999899999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=4.2e-43  Score=324.37  Aligned_cols=310  Identities=17%  Similarity=0.169  Sum_probs=256.3

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +||++++.+++       +.++++++++    |+|+++||+|||.++++|++|++...|...    ..+|...|+|++|+
T Consensus         1 ~mka~~~~~~~-------~~~~~~~~~~----p~~~~~evlV~v~~~gi~~~D~~~~~g~~~----~~~p~i~G~e~~G~   65 (358)
T TIGR03451         1 TVRGVIARSKG-------APVELETIVV----PDPGPGEVIVDIQACGVCHTDLHYREGGIN----DEFPFLLGHEAAGV   65 (358)
T ss_pred             CcEEEEEccCC-------CCCEEEEEEC----CCCCCCeEEEEEEEEeecHHHHHHhcCCcc----ccCCcccccceEEE
Confidence            48899998764       4478888866    778999999999999999999999886432    22333444599999


Q ss_pred             EEEeccCCCCCCCCCEEEe------------------------------------------ccCCeeeEEeecCCccccc
Q 042784           92 ARVIRSKDSKYSDGDIVLR------------------------------------------AFLPVAEYSLLPCDLLTRK  129 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~------------------------------------------~~g~~a~~~~v~~~~~~~~  129 (356)
                      |+++|+++++|++||||++                                          ..|+|+||+.++++.++.+
T Consensus        66 V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  145 (358)
T TIGR03451        66 VEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKV  145 (358)
T ss_pred             EEEeCCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEEC
Confidence            9999999999999999983                                          1388999999999887554


Q ss_pred             CCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHH
Q 042784          130 LDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEE  208 (356)
Q Consensus       130 i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~  208 (356)
                         |+++++++ ++.+++.+.+||+++...+++++|++|||+|+ |++|++++|+||..|+ +|++++++++++++++ +
T Consensus       146 ---p~~~~~~~-aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~-~  219 (358)
T TIGR03451       146 ---DPAADPAA-AGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR-E  219 (358)
T ss_pred             ---CCCCChhH-hhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-H
Confidence               89999988 78899999999999877788999999999985 9999999999999999 5999999999999998 8


Q ss_pred             hCCCceeecCChhhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh
Q 042784          209 FGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI  286 (356)
Q Consensus       209 ~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  286 (356)
                      +|+++++++.+ .++.+.+.+.++ .++|++|||+|+ ..+..++++++++|+++.+|......      ....+...++
T Consensus       220 ~Ga~~~i~~~~-~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~------~~~~~~~~~~  292 (358)
T TIGR03451       220 FGATHTVNSSG-TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDM------TLELPLLDVF  292 (358)
T ss_pred             cCCceEEcCCC-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCc------eeeccHHHHh
Confidence            99999999876 678888888875 489999999997 58899999999999999999754311      1123445667


Q ss_pred             ccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          287 GKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      .+++++.++......  ..+.++++++++.+|.+++  .++++|+++|+++||+.+.+++.. |+++.
T Consensus       293 ~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~  357 (358)
T TIGR03451       293 GRGGALKSSWYGDCL--PERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE  357 (358)
T ss_pred             hcCCEEEEeecCCCC--cHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence            788888887543221  2356888999999999965  578899999999999999888765 77764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=4.6e-43  Score=323.71  Aligned_cols=315  Identities=17%  Similarity=0.186  Sum_probs=248.9

Q ss_pred             CCccccccceeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCC
Q 042784            1 MGSAEEKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQF   80 (356)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~   80 (356)
                      |+.+.|...++++.+|....       ..+.+++.+++.    |+|+++||+|||.+++||++|++.+.|.+. ....|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~----p~~~~~eVlV~v~~~gic~sD~~~~~g~~~-~~~~p~   68 (360)
T PLN02586          1 MAKSPEEEHPQKAFGWAARD-------PSGVLSPFHFSR----RENGDEDVTVKILYCGVCHSDLHTIKNEWG-FTRYPI   68 (360)
T ss_pred             CCCChhhhchhheeEEEecC-------CCCCceEEeecC----CCCCCCeEEEEEEEecCChhhHhhhcCCcC-CCCCCc
Confidence            66666666554455555432       336677777644    788999999999999999999999886432 112344


Q ss_pred             ccCceeeeeEEEEEeccCCCCCCCCCEEEec-------------------------------------cCCeeeEEeecC
Q 042784           81 NLNQVILAFGIARVIRSKDSKYSDGDIVLRA-------------------------------------FLPVAEYSLLPC  123 (356)
Q Consensus        81 ~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~-------------------------------------~g~~a~~~~v~~  123 (356)
                      .+|  +|++|+|+++|+++++|++||||++.                                     .|+|+||+++++
T Consensus        69 i~G--hE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~  146 (360)
T PLN02586         69 VPG--HEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQ  146 (360)
T ss_pred             cCC--cceeEEEEEECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEch
Confidence            455  59999999999999999999999731                                     388999999999


Q ss_pred             CcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHH
Q 042784          124 DLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK  203 (356)
Q Consensus       124 ~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~  203 (356)
                      +.++++   |+++++++ +|++++++.|||+++.....+++|++|+|.|+ |++|++++|+||.+|++|++++.++++..
T Consensus       147 ~~~~~l---P~~ls~~~-aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~  221 (360)
T PLN02586        147 HFVLRF---PDNLPLDA-GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKED  221 (360)
T ss_pred             HHeeeC---CCCCCHHH-hhhhhcchHHHHHHHHHhcccCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhh
Confidence            888555   99999999 78999999999999976677789999999886 99999999999999999988877766654


Q ss_pred             HHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhh
Q 042784          204 LLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNL  282 (356)
Q Consensus       204 ~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  282 (356)
                      .+.+++|++.++++.+ .   +.+++.++ ++|+|||++|.. .+..++++++++|+++.+|.....        ...+.
T Consensus       222 ~~~~~~Ga~~vi~~~~-~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~--------~~~~~  288 (360)
T PLN02586        222 EAINRLGADSFLVSTD-P---EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKP--------LELPI  288 (360)
T ss_pred             hHHHhCCCcEEEcCCC-H---HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCC--------CccCH
Confidence            4433899998888764 2   24555544 699999999974 788999999999999999865321        12234


Q ss_pred             hhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          283 LNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ..++.++..+.++..++.     +.++++++++.+|++++.+ ++|+|+|+++||+.+.+++..||+|+++
T Consensus       289 ~~~~~~~~~i~g~~~~~~-----~~~~~~~~li~~g~i~~~~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  353 (360)
T PLN02586        289 FPLVLGRKLVGGSDIGGI-----KETQEMLDFCAKHNITADI-ELIRMDEINTAMERLAKSDVRYRFVIDV  353 (360)
T ss_pred             HHHHhCCeEEEEcCcCCH-----HHHHHHHHHHHhCCCCCcE-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            455667777777654432     4578899999999999877 4899999999999999999889999986

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=8.3e-43  Score=320.42  Aligned_cols=304  Identities=19%  Similarity=0.159  Sum_probs=250.0

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..        ++.++++++++    |+++++||+|||.++++|++|++.+.|........|..+|  +|++|+|
T Consensus         1 mka~~~~~--------~~~l~~~~~~~----p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G--~e~~G~V   66 (339)
T cd08239           1 MRGAVFPG--------DRTVELREFPV----PVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPG--HEPAGVV   66 (339)
T ss_pred             CeEEEEec--------CCceEEEecCC----CCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceec--cCceEEE
Confidence            56777662        36788988755    7789999999999999999999988754322111234444  5999999


Q ss_pred             EEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +++|++++.+++||+|+..                              .|+|+||+.++.+.++.+   |+++++++ +
T Consensus        67 ~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~---P~~~~~~~-a  142 (339)
T cd08239          67 VAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPL---PDDLSFAD-G  142 (339)
T ss_pred             EEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEEC---CCCCCHHH-h
Confidence            9999999999999999831                              388999999999888555   99999999 7


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      +++++++.|||+++. ..++++|++|||+|+ |++|++++|+||.+|++ |+++++++++.++++ ++|++.++++++ .
T Consensus       143 a~l~~~~~ta~~~l~-~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~-~~ga~~~i~~~~-~  218 (339)
T cd08239         143 ALLLCGIGTAYHALR-RVGVSGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELAK-ALGADFVINSGQ-D  218 (339)
T ss_pred             hhhcchHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEcCCc-c
Confidence            889999999999996 577899999999986 99999999999999997 999999999999998 899999999876 4


Q ss_pred             hHHHHHHHHCC-CCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccc
Q 042784          222 SFDAALTKYFP-NGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS  299 (356)
Q Consensus       222 ~~~~~i~~~~~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (356)
                      + .+.+.++++ .++|++|||+|+. .+..++++++++|+++.+|.....        .......++.+++++.++...+
T Consensus       219 ~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~i~g~~~~~  289 (339)
T cd08239         219 D-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGEL--------TIEVSNDLIRKQRTLIGSWYFS  289 (339)
T ss_pred             h-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCc--------ccCcHHHHHhCCCEEEEEecCC
Confidence            4 667777764 4899999999986 558899999999999999875431        1112235677889998876543


Q ss_pred             ccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          300 HMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                           .+.++++++++.+|.+.  +.++++|+++++++||+.+.+++ .||+|+++
T Consensus       290 -----~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~gKvvi~~  339 (339)
T cd08239         290 -----VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-SGKVVFVF  339 (339)
T ss_pred             -----HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence                 24678899999999886  47888999999999999998875 69999975

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=1.8e-42  Score=316.35  Aligned_cols=322  Identities=31%  Similarity=0.519  Sum_probs=255.0

Q ss_pred             eeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEE
Q 042784           14 KEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIAR   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~   93 (356)
                      |.|+++.. +.+.++++.+++.+.+.    |.|+++||||||.++++|+.++.-..    .....+.  ..|.+++|+|.
T Consensus         2 ~~~~~~~~-~~~~~~~~~l~~~~~~~----p~~~~~evlv~v~a~~~n~~~~~g~~----~~~~~~~--i~G~~~~g~v~   70 (325)
T TIGR02825         2 KTWTLKKH-FVGYPTDSDFELKTVEL----PPLNNGEVLLEALFLSVDPYMRVAAK----RLKEGDT--MMGQQVARVVE   70 (325)
T ss_pred             cEEEEecC-CCCCCCCCceEEEeccC----CCCCCCcEEEEEEEEecCHHHhcccC----cCCCCCc--EecceEEEEEE
Confidence            56777765 46778889999998755    78999999999999999997654322    1111233  44558999999


Q ss_pred             EeccCCCCCCCCCEEEeccCCeeeEEeecCCccccc-CCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEc
Q 042784           94 VIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRK-LDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSA  172 (356)
Q Consensus        94 ~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~~~-i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g  172 (356)
                      .+|+   .|++||||+ ++++|++|++++.+.+... .+.|+++++++++++++++++|||+++.+.+++++|++|||+|
T Consensus        71 ~~~~---~~~~GdrV~-~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~g  146 (325)
T TIGR02825        71 SKNV---ALPKGTIVL-ASPGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNA  146 (325)
T ss_pred             eCCC---CCCCCCEEE-EecCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeC
Confidence            9774   599999999 8889999999998776433 1238899998822689999999999998889999999999999


Q ss_pred             CCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHH
Q 042784          173 AAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLN  252 (356)
Q Consensus       173 ~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~  252 (356)
                      ++|++|++++|+||..|++|+++++++++.+.++ ++|++.++++++...+.+.++..+++++|++|||+|+..+..+++
T Consensus       147 a~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~-~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~~~~~~~~  225 (325)
T TIGR02825       147 AAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK-KLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIG  225 (325)
T ss_pred             CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHHHHHHHHH
Confidence            9999999999999999999999999999999998 899999999876335666777777678999999999998899999


Q ss_pred             hcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-chHHHHHHHHHHHHHcCCeeeeeeEEeChh
Q 042784          253 HVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEGKIRSKHVIYYGVE  331 (356)
Q Consensus       253 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~  331 (356)
                      +++++|+++.+|...........+ .......++.+++++.++....+. ....+.++++++++++|++++.+..+|+++
T Consensus       226 ~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~  304 (325)
T TIGR02825       226 QMKKFGRIAICGAISTYNRTGPLP-PGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFE  304 (325)
T ss_pred             HhCcCcEEEEecchhhcccCCCCC-CCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccceeccccHH
Confidence            999999999998754311000001 011233445677777776554332 223457889999999999998877789999


Q ss_pred             hHHHHHHHHHcCCCcceEEEE
Q 042784          332 SFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       332 ~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ++++|++.+.+++..||+|++
T Consensus       305 ~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       305 NMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             HHHHHHHHHhcCCCCCeEEeC
Confidence            999999999999999999973

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=2.1e-42  Score=316.47  Aligned_cols=320  Identities=34%  Similarity=0.610  Sum_probs=256.3

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +|++|++.... .+.+.++.+++++.+.    |+|+++||+|||.+++||+.|+....    ..  .+++...|.+++|+
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~----p~~~~~evlVkv~a~~in~~~~~~~~----~~--~~~p~v~G~e~~G~   70 (329)
T cd08294           2 KAKTWVLKKHF-DGKPKESDFELVEEEL----PPLKDGEVLCEALFLSVDPYMRPYSK----RL--NEGDTMIGTQVAKV   70 (329)
T ss_pred             CceEEEEecCC-CCCCCccceEEEecCC----CCCCCCcEEEEEEEEecCHHHhcccc----cC--CCCCcEecceEEEE
Confidence            58899999731 1234458899998866    78999999999999999998765221    11  12333444588899


Q ss_pred             EEEeccCCCCCCCCCEEEeccCCeeeEEeecCC---cccccCCCCCCCC--c---cccccccCchhhhHHHHHHHhCCCC
Q 042784           92 ARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCD---LLTRKLDPASGIP--F---PDYLSSLGIPGFAAWVGIEVLGQPK  163 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~---~~~~~i~~P~~~s--~---~~~aa~l~~~~~ta~~~l~~~~~~~  163 (356)
                      |++   .++++++||||+ ++++|++|+.++.+   .++.+   |++++  +   .. +++++++++|||+++.+.++++
T Consensus        71 V~~---~~~~~~~Gd~V~-~~~~~~~~~~~~~~~~~~~~~i---P~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~  142 (329)
T cd08294          71 IES---KNSKFPVGTIVV-ASFGWRTHTVSDGKDQPDLYKL---PADLPDDLPPSLA-LGVLGMPGLTAYFGLLEICKPK  142 (329)
T ss_pred             Eec---CCCCCCCCCEEE-eeCCeeeEEEECCccccceEEC---CccccccCChHHH-HHhcccHHHHHHHHHHHhcCCC
Confidence            984   456899999999 88899999999998   77554   99988  2   22 3578899999999998889999


Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|++|||+|++|++|.+++|+|+..|++|+++++++++.++++ ++|+++++++++ .++.+.+++++++++|++||++|
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~-~~Ga~~vi~~~~-~~~~~~v~~~~~~gvd~vld~~g  220 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK-ELGFDAVFNYKT-VSLEEALKEAAPDGIDCYFDNVG  220 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCC-ccHHHHHHHHCCCCcEEEEECCC
Confidence            9999999999999999999999999999999999999999999 799999999987 67888888887778999999999


Q ss_pred             hhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeee
Q 042784          244 GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSK  323 (356)
Q Consensus       244 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~  323 (356)
                      ++.+..++++++++|+++.+|............ .......++.+++++.++....+.....+.++++++++.+|.+++.
T Consensus       221 ~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~  299 (329)
T cd08294         221 GEFSSTVLSHMNDFGRVAVCGSISTYNDKEPKK-GPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR  299 (329)
T ss_pred             HHHHHHHHHhhccCCEEEEEcchhccCCCCCCc-CcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC
Confidence            999999999999999999998643211000000 0112334566788888876554433445678899999999999987


Q ss_pred             eeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          324 HVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       324 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +..+|+++++++|++.+.+++..||+|+++
T Consensus       300 ~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         300 EHVTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             cccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            667899999999999999999999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.7e-42  Score=322.55  Aligned_cols=314  Identities=16%  Similarity=0.165  Sum_probs=253.8

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      .+||++++.+..       +.+.+++++.    |+|+++||+|||.++++|++|++.+.|.....  .++|...|+|++|
T Consensus         9 ~~mka~~~~~~~-------~~~~~~e~~~----P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~--~~~p~i~GhE~~G   75 (381)
T PLN02740          9 ITCKAAVAWGPG-------EPLVMEEIRV----DPPQKMEVRIKILYTSICHTDLSAWKGENEAQ--RAYPRILGHEAAG   75 (381)
T ss_pred             eeeEEEEEecCC-------CCcEEEEeeC----CCCCCCeEEEEEEEEecChhhHHHhCCCCccc--CCCCccccccceE
Confidence            468888887542       4578888765    77899999999999999999999988754222  2233444459999


Q ss_pred             EEEEeccCCCCCCCCCEEEec-----------------------------------------------------cCCeee
Q 042784           91 IARVIRSKDSKYSDGDIVLRA-----------------------------------------------------FLPVAE  117 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~-----------------------------------------------------~g~~a~  117 (356)
                      +|+++|++++++++||||++.                                                     .|+|+|
T Consensus        76 ~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~ae  155 (381)
T PLN02740         76 IVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTE  155 (381)
T ss_pred             EEEEeCCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCcccee
Confidence            999999999999999999831                                                     378999


Q ss_pred             EEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEe
Q 042784          118 YSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGST  196 (356)
Q Consensus       118 ~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~  196 (356)
                      |++++.+.++++   |+++++++ +|.+++++.|||+++...+++++|++|||+|+ |++|++++|+||.+|+ +|++++
T Consensus       156 y~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~  230 (381)
T PLN02740        156 YTVLDSACVVKI---DPNAPLKK-MSLLSCGVSTGVGAAWNTANVQAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVD  230 (381)
T ss_pred             EEEEehHHeEEC---CCCCCHHH-hhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEc
Confidence            999999887554   99999998 78899999999999877789999999999996 9999999999999999 799999


Q ss_pred             CChHHHHHHHHHhCCCceeecCCh-hhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEeccccccccc
Q 042784          197 GSDDNVKLLKEEFGYDDAFNYNSE-MSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVW  273 (356)
Q Consensus       197 ~s~~~~~~~~~~~g~~~v~~~~~~-~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~  273 (356)
                      +++++.+.++ ++|++.++++.+. .++.+.+++++++++|++||++|. ..+..++++++++ |+++.+|......   
T Consensus       231 ~~~~r~~~a~-~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~---  306 (381)
T PLN02740        231 INPEKFEKGK-EMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPK---  306 (381)
T ss_pred             CChHHHHHHH-HcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCc---
Confidence            9999999998 8999989987752 247788888876589999999997 5889999999996 9999999764311   


Q ss_pred             ccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          274 TERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                         ........+ .+++++.++..+++..  ...+.++++++.++.+++  .++++|+|+|+++|++.+.+++. .|++|
T Consensus       307 ---~~~~~~~~~-~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~  379 (381)
T PLN02740        307 ---MLPLHPMEL-FDGRSITGSVFGDFKG--KSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLL  379 (381)
T ss_pred             ---eecccHHHH-hcCCeEEEEecCCCCc--HHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEE
Confidence               011122222 3678888876655432  245788999999998864  68889999999999999988765 59998


Q ss_pred             Ee
Q 042784          352 QV  353 (356)
Q Consensus       352 ~~  353 (356)
                      ++
T Consensus       380 ~~  381 (381)
T PLN02740        380 HL  381 (381)
T ss_pred             eC
Confidence            64

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=3e-42  Score=320.21  Aligned_cols=311  Identities=15%  Similarity=0.150  Sum_probs=255.8

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      ..||++++...       .+.+++++.++    |.|+++||+|||.++++|++|++.+.|..    ..|..+|  +|++|
T Consensus        11 ~~mka~~~~~~-------~~~~~~~e~~~----P~~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~G--hE~~G   73 (378)
T PLN02827         11 ITCRAAVAWGA-------GEALVMEEVEV----SPPQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFG--HEASG   73 (378)
T ss_pred             ceeEEEEEecC-------CCCceEEEeec----CCCCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeec--ccceE
Confidence            34778877643       25688888866    77999999999999999999999887531    2344455  59999


Q ss_pred             EEEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEe
Q 042784           91 IARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSL  120 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~  120 (356)
                      +|+++|++++++++||||+..                                                  .|+|+||+.
T Consensus        74 ~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~  153 (378)
T PLN02827         74 IVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTV  153 (378)
T ss_pred             EEEEcCCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEE
Confidence            999999999999999999931                                                  178999999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      ++++.++++   |+++++++ ++.+.+++.++|+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ .|++++.++
T Consensus       154 v~~~~~~~i---P~~l~~~~-aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~  228 (378)
T PLN02827        154 VHSGCAVKV---DPLAPLHK-ICLLSCGVAAGLGAAWNVADVSKGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINP  228 (378)
T ss_pred             echhheEEC---CCCCCHHH-hhhhcchhHhhHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            999888554   99999988 78888899999998876788999999999996 9999999999999999 688888899


Q ss_pred             HHHHHHHHHhCCCceeecCCh-hhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccC-CEEEEEecccccccccccc
Q 042784          200 DNVKLLKEEFGYDDAFNYNSE-MSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVH-ARIILCGMISQYNKVWTER  276 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~-~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~  276 (356)
                      ++.++++ ++|+++++++++. .++.+.+++++++++|++|||+|.. .+..+++.++++ |+++.+|.....      .
T Consensus       229 ~~~~~a~-~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~------~  301 (378)
T PLN02827        229 EKAEKAK-TFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK------P  301 (378)
T ss_pred             HHHHHHH-HcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC------c
Confidence            9999998 8999989988642 3677788888766899999999985 789999999998 999999975431      1


Q ss_pred             cchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          277 DGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                       .......++.+++++.++....+.  ....++++++++.+|++++  .++++|+|+++++||+.+.+++. .|+||.++
T Consensus       302 -~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~~~  377 (378)
T PLN02827        302 -EVSAHYGLFLSGRTLKGSLFGGWK--PKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIHMP  377 (378)
T ss_pred             -cccccHHHHhcCceEEeeecCCCc--hhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEEec
Confidence             111123456788999887765442  1345788999999999998  78899999999999999998876 69999876

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=1.9e-42  Score=315.96  Aligned_cols=313  Identities=18%  Similarity=0.225  Sum_probs=255.0

Q ss_pred             eeeEEEecccCCCCCCC---CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           13 SKEWYISAYASDGVPTS---DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      ||++++..++     .+   +.+++++.+.    |.|+++||+||+.++++|++|++...|.+......|..+|  +|++
T Consensus         1 m~a~~~~~~~-----~~~~~~~~~~~~~~~----p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G--~e~~   69 (324)
T cd08291           1 MKALLLEEYG-----KPLEVKELSLPEPEV----PEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPG--FEGS   69 (324)
T ss_pred             CeEEEEeecC-----CCccccEEEecccCC----CCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCC--cceE
Confidence            5778877653     23   5677877755    7889999999999999999999988875432212234444  5999


Q ss_pred             EEEEEeccCCCC-CCCCCEEEecc----CCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCC
Q 042784           90 GIARVIRSKDSK-YSDGDIVLRAF----LPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKS  164 (356)
Q Consensus        90 G~v~~vg~~v~~-~~~Gd~V~~~~----g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~  164 (356)
                      |+|+++|+++.+ +++||+|+ +.    |+|+||+.++++.++++   |+++++++ ++++++.++|||.++ ...+. +
T Consensus        70 G~V~~vG~~v~~~~~vGd~V~-~~~~~~g~~a~~~~v~~~~~~~i---P~~~~~~~-aa~~~~~~~ta~~~~-~~~~~-~  142 (324)
T cd08291          70 GTVVAAGGGPLAQSLIGKRVA-FLAGSYGTYAEYAVADAQQCLPL---PDGVSFEQ-GASSFVNPLTALGML-ETARE-E  142 (324)
T ss_pred             EEEEEECCCccccCCCCCEEE-ecCCCCCcchheeeecHHHeEEC---CCCCCHHH-HhhhcccHHHHHHHH-Hhhcc-C
Confidence            999999999996 99999999 43    89999999999887554   99999998 788888999998655 45555 5


Q ss_pred             CCEEEEE-cCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECC
Q 042784          165 GSNVFVS-AAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNV  242 (356)
Q Consensus       165 g~~VlV~-g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~  242 (356)
                      +++++|+ |++|++|++++|+|+.+|++|+++++++++.+.++ ++|++++++++. .++.+.++++++ +++|++|||+
T Consensus       143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~-~~~~~~v~~~~~~~~~d~vid~~  220 (324)
T cd08291         143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLK-KIGAEYVLNSSD-PDFLEDLKELIAKLNATIFFDAV  220 (324)
T ss_pred             CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEECCC-ccHHHHHHHHhCCCCCcEEEECC
Confidence            6667676 78899999999999999999999999999999999 899999999886 678888888874 5899999999


Q ss_pred             chhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc-hHHHHHHHHHHHHHcCCee
Q 042784          243 GGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD-RFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       243 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~g~i~  321 (356)
                      |+......+++++++|+++.+|......      ....+...++.+++++.++....+.. ...+.++++++++. +.++
T Consensus       221 g~~~~~~~~~~l~~~G~~v~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  293 (324)
T cd08291         221 GGGLTGQILLAMPYGSTLYVYGYLSGKL------DEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELK  293 (324)
T ss_pred             CcHHHHHHHHhhCCCCEEEEEEecCCCC------cccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Cccc
Confidence            9988888999999999999998754321      11123445677899999887765432 23567888999988 9999


Q ss_pred             eeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          322 SKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       322 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      +.++++|+|+|+.+||+.+.+++..||+|++
T Consensus       294 ~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         294 TTFASRYPLALTLEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             cceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence            9999999999999999999999999999974

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-42  Score=317.87  Aligned_cols=302  Identities=15%  Similarity=0.108  Sum_probs=241.8

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      .+++.++.+        ++.+++++.+.    | +.++||||||.++|||++|++++.+...+.+..++|...|+|++|+
T Consensus         4 ~~~~~~~~~--------~~~~~~~~~~~----p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~   70 (343)
T PRK09880          4 KTQSCVVAG--------KKDVAVTEQEI----E-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGK   70 (343)
T ss_pred             cceEEEEec--------CCceEEEecCC----C-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEE
Confidence            456666653        36789988765    4 4789999999999999999998753222222223344445599999


Q ss_pred             EEEeccCCCCCCCCCEEEe----------------------------------ccCCeeeEEeecCCcccccCCCCCCCC
Q 042784           92 ARVIRSKDSKYSDGDIVLR----------------------------------AFLPVAEYSLLPCDLLTRKLDPASGIP  137 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~----------------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s  137 (356)
                      |+++  ++++|++||||++                                  ..|+|+||++++++.++++   |++++
T Consensus        71 V~~v--~v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~---P~~l~  145 (343)
T PRK09880         71 IVHS--DSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPY---PEKAD  145 (343)
T ss_pred             EEEe--cCccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEEC---CCCCC
Confidence            9999  7889999999983                                  1388999999999988555   99999


Q ss_pred             ccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceee
Q 042784          138 FPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFN  216 (356)
Q Consensus       138 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~  216 (356)
                      +++  +++..++.+||+++.+ ....+|++|+|+|+ |++|++++|+|+.+|+ +|++++++++++++++ ++|++.++|
T Consensus       146 ~~~--aa~~~~~~~a~~al~~-~~~~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~-~lGa~~vi~  220 (343)
T PRK09880        146 EKV--MAFAEPLAVAIHAAHQ-AGDLQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR-EMGADKLVN  220 (343)
T ss_pred             HHH--HHhhcHHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH-HcCCcEEec
Confidence            876  5677888999999975 45568999999996 9999999999999999 7999999999999999 899999999


Q ss_pred             cCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEE
Q 042784          217 YNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGF  295 (356)
Q Consensus       217 ~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      +++ .++.+.. +. .+++|++|||+|.+ .+..++++++++|+++.+|.....        ...++..++.+++++.++
T Consensus       221 ~~~-~~~~~~~-~~-~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~--------~~~~~~~~~~k~~~i~g~  289 (343)
T PRK09880        221 PQN-DDLDHYK-AE-KGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAP--------PEFPMMTLIVKEISLKGS  289 (343)
T ss_pred             CCc-ccHHHHh-cc-CCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCC--------CccCHHHHHhCCcEEEEE
Confidence            876 4444322 22 23699999999984 789999999999999999974321        123455667888998887


Q ss_pred             ecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          296 MIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ...      .+.++++++++.+|++++  .++++|+|+|+++||+.+.+++..||+|+.+
T Consensus       290 ~~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        290 FRF------TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             eec------cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            532      245788999999999975  6788999999999999999888889999864

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=2e-41  Score=314.04  Aligned_cols=311  Identities=16%  Similarity=0.185  Sum_probs=247.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++.+....       +.+++++++.    |+|+++||+|||.++++|++|++...|....   .++|...|+|++|+|
T Consensus         2 ~~a~~~~~~~-------~~l~~~~~~~----P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~---~~~p~i~GhE~~G~V   67 (368)
T TIGR02818         2 SRAAVAWAAG-------QPLKIEEVDV----EMPQKGEVLVRIVATGVCHTDAFTLSGADPE---GVFPVILGHEGAGIV   67 (368)
T ss_pred             ceEEEEecCC-------CCeEEEEecC----CCCCCCeEEEEEEEecccHHHHHHhcCCCCC---CCCCeeeccccEEEE
Confidence            6677776532       5688888755    7789999999999999999999998875321   223344445999999


Q ss_pred             EEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEeec
Q 042784           93 RVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSLLP  122 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~v~  122 (356)
                      +++|++++++++||||++.                                                  .|+|+||++++
T Consensus        68 ~~vG~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~  147 (368)
T TIGR02818        68 EAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVP  147 (368)
T ss_pred             EEECCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEec
Confidence            9999999999999999831                                                  15899999999


Q ss_pred             CCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHH
Q 042784          123 CDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDN  201 (356)
Q Consensus       123 ~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~  201 (356)
                      ++.++++   |+++++++ +|++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|++++.++++
T Consensus       148 ~~~~~~l---P~~l~~~~-aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~  222 (368)
T TIGR02818       148 EISLAKI---NPAAPLEE-VCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAK  222 (368)
T ss_pred             hhheEEC---CCCCCHHH-hhhhcchhHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            9888555   99999999 78899999999999977788999999999986 9999999999999999 89999999999


Q ss_pred             HHHHHHHhCCCceeecCC-hhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEecccccccccccccc
Q 042784          202 VKLLKEEFGYDDAFNYNS-EMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVWTERDG  278 (356)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~-~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~  278 (356)
                      +++++ ++|++.++++.+ ..++.+.+++++++++|++|||+|. ..+..++++++++ |+++.+|......     + .
T Consensus       223 ~~~a~-~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~-----~-~  295 (368)
T TIGR02818       223 FELAK-KLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQ-----E-I  295 (368)
T ss_pred             HHHHH-HhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCC-----c-c
Confidence            99998 899998998764 2456777888776689999999996 4788999999886 9999999754211     0 1


Q ss_pred             hhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          279 VRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ......++. +..+.+...+...  ....+.++++++.+|++.  +.++++|+|+|+++||+.+.+++. .|+++++
T Consensus       296 ~~~~~~~~~-~~~~~g~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~  368 (368)
T TIGR02818       296 STRPFQLVT-GRVWRGSAFGGVK--GRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY  368 (368)
T ss_pred             cccHHHHhc-cceEEEeeccCCC--cHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence            112222222 3345555433221  234578899999999875  568889999999999999987764 6999875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.2e-41  Score=313.45  Aligned_cols=306  Identities=18%  Similarity=0.174  Sum_probs=246.2

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +.|+..+....     .++.+++.+++.    |.|+++||+|||.++++|++|++.+.|.+.. ...|..+|  +|++|+
T Consensus         4 ~~~a~~~~~~~-----~~~~l~~~~~~~----p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~G--hE~aG~   71 (375)
T PLN02178          4 QNKAFGWAAND-----ESGVLSPFHFSR----RENGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPG--HEIVGI   71 (375)
T ss_pred             cceeEEEEEcc-----CCCCceEEeecC----CCCCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccC--ceeeEE
Confidence            45666666542     345677777644    6789999999999999999999998874321 12244455  599999


Q ss_pred             EEEeccCCCCCCCCCEEEec-------------------------------------cCCeeeEEeecCCcccccCCCCC
Q 042784           92 ARVIRSKDSKYSDGDIVLRA-------------------------------------FLPVAEYSLLPCDLLTRKLDPAS  134 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~-------------------------------------~g~~a~~~~v~~~~~~~~i~~P~  134 (356)
                      |+++|+++++|++||||++.                                     .|+|+||++++++.++.+   |+
T Consensus        72 Vv~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~l---P~  148 (375)
T PLN02178         72 ATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSI---PD  148 (375)
T ss_pred             EEEECCCCCccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEEC---CC
Confidence            99999999999999999731                                     478999999999887554   99


Q ss_pred             CCCccccccccCchhhhHHHHHHHhCC-CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-HHHHHHHhCCC
Q 042784          135 GIPFPDYLSSLGIPGFAAWVGIEVLGQ-PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-VKLLKEEFGYD  212 (356)
Q Consensus       135 ~~s~~~~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-~~~~~~~~g~~  212 (356)
                      ++++++ ++++.+++.|||+++..... .++|++|+|.|+ |++|++++|+||.+|++|++++.++++ .+.++ ++|++
T Consensus       149 ~ls~~~-aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~-~lGa~  225 (375)
T PLN02178        149 GLPSDS-GAPLLCAGITVYSPMKYYGMTKESGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAID-RLGAD  225 (375)
T ss_pred             CCCHHH-cchhhccchHHHHHHHHhCCCCCCCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH-hCCCc
Confidence            999999 78999999999999865443 368999999986 999999999999999999998876554 67776 89999


Q ss_pred             ceeecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceE
Q 042784          213 DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVK  291 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (356)
                      +++++.+ .   +.+.+.++ ++|++|||+|.. .+..++++++++|+++.+|.....        ...+...++.++++
T Consensus       226 ~~i~~~~-~---~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~--------~~~~~~~~~~~~~~  292 (375)
T PLN02178        226 SFLVTTD-S---QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKP--------LDLPIFPLVLGRKM  292 (375)
T ss_pred             EEEcCcC-H---HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCC--------CccCHHHHHhCCeE
Confidence            8888764 2   34555444 699999999986 789999999999999999875321        12344556778888


Q ss_pred             EEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          292 MEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      +.++..++.     +.+.++++++.+|++++.+ ++|+|+|+++||+.+.+++..||+|+++.
T Consensus       293 i~g~~~~~~-----~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~~  349 (375)
T PLN02178        293 VGGSQIGGM-----KETQEMLEFCAKHKIVSDI-ELIKMSDINSAMDRLAKSDVRYRFVIDVA  349 (375)
T ss_pred             EEEeCccCH-----HHHHHHHHHHHhCCCcccE-EEEeHHHHHHHHHHHHcCCCceEEEEEec
Confidence            888765432     4578899999999999877 47999999999999999998899999874

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=5.1e-41  Score=311.84  Aligned_cols=310  Identities=14%  Similarity=0.155  Sum_probs=252.3

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +||++++....       +.++++++++    |+|+++||+|||.++++|++|++.+.|...   ..++|...|+|++|+
T Consensus         2 ~~ka~~~~~~~-------~~~~l~~~~~----p~~~~~evlIkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~   67 (369)
T cd08301           2 TCKAAVAWEAG-------KPLVIEEVEV----APPQAMEVRIKILHTSLCHTDVYFWEAKGQ---TPLFPRILGHEAAGI   67 (369)
T ss_pred             ccEEEEEecCC-------CCcEEEEeeC----CCCCCCeEEEEEEEEeeCchhHHHhcCCCC---CCCCCcccccccceE
Confidence            57888887543       5688988866    778999999999999999999998887432   223344445599999


Q ss_pred             EEEeccCCCCCCCCCEEEec---------------------------------------------------cCCeeeEEe
Q 042784           92 ARVIRSKDSKYSDGDIVLRA---------------------------------------------------FLPVAEYSL  120 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~---------------------------------------------------~g~~a~~~~  120 (356)
                      |+++|+++++|++||||+..                                                   .|+|+||+.
T Consensus        68 V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~  147 (369)
T cd08301          68 VESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTV  147 (369)
T ss_pred             EEEeCCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEE
Confidence            99999999999999999831                                                   267999999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      ++.+.++.+   |+++++++ ++.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++
T Consensus       148 v~~~~~~~i---P~~~~~~~-aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~  222 (369)
T cd08301         148 VHVGCVAKI---NPEAPLDK-VCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNP  222 (369)
T ss_pred             EecccEEEC---CCCCCHHH-hhhhcchhhHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            999888555   99999998 78899999999999877889999999999986 9999999999999999 899999999


Q ss_pred             HHHHHHHHHhCCCceeecCCh-hhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccC-CEEEEEecccccccccccc
Q 042784          200 DNVKLLKEEFGYDDAFNYNSE-MSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVH-ARIILCGMISQYNKVWTER  276 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~-~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~  276 (356)
                      ++.++++ ++|++.++++.+. .++.+.+++++++++|++|||+|.. .+..++++++++ |+++.+|......     .
T Consensus       223 ~~~~~~~-~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~-----~  296 (369)
T cd08301         223 SKFEQAK-KFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDA-----V  296 (369)
T ss_pred             HHHHHHH-HcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCc-----c
Confidence            9999998 8999988887642 3577778887766899999999875 788899999996 9999999865311     1


Q ss_pred             cchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          277 DGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                       .......++ +++++.++...++.  .+..++++++++.++.++.  .++++|+|+|+++||+.+.+++.. |+|+
T Consensus       297 -~~~~~~~~~-~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~  368 (369)
T cd08301         297 -FSTHPMNLL-NGRTLKGTLFGGYK--PKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECL-RCIL  368 (369)
T ss_pred             -cccCHHHHh-cCCeEEEEecCCCC--hHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCce-eEEe
Confidence             111222233 68899888765542  2345788999999998764  578899999999999999988764 8876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=5.5e-41  Score=311.29  Aligned_cols=311  Identities=17%  Similarity=0.200  Sum_probs=248.5

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +||++.+....       +.+++++++.    |.|+++||+|||.++++|++|.+.+.|.... ...|+.+|  +|++|+
T Consensus         2 ~~~a~~~~~~~-------~~~~~~~~~~----P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G--~E~~G~   67 (368)
T cd08300           2 TCKAAVAWEAG-------KPLSIEEVEV----APPKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILG--HEGAGI   67 (368)
T ss_pred             cceEEEEecCC-------CCcEEEEeec----CCCCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceec--cceeEE
Confidence            47777776542       5688888865    7789999999999999999999998875321 12334444  599999


Q ss_pred             EEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEee
Q 042784           92 ARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSLL  121 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~v  121 (356)
                      |+++|+++++|++||||+..                                                  .|+|+||+.+
T Consensus        68 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v  147 (368)
T cd08300          68 VESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVV  147 (368)
T ss_pred             EEEeCCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEE
Confidence            99999999999999999831                                                  2589999999


Q ss_pred             cCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChH
Q 042784          122 PCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDD  200 (356)
Q Consensus       122 ~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~  200 (356)
                      +++.++++   |+++++++ ++.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|++++++++
T Consensus       148 ~~~~~~~i---P~~l~~~~-aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~  222 (368)
T cd08300         148 AEISVAKI---NPEAPLDK-VCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPD  222 (368)
T ss_pred             chhceEeC---CCCCChhh-hhhhccchhhhHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            99888554   99999998 78899999999999877788999999999985 9999999999999999 7999999999


Q ss_pred             HHHHHHHHhCCCceeecCCh-hhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEeccccccccccccc
Q 042784          201 NVKLLKEEFGYDDAFNYNSE-MSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVWTERD  277 (356)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~-~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~  277 (356)
                      +.+.++ ++|+++++++++. +++.+.+.+++++++|+||||+|. ..+..++++++++ |+++.+|......     + 
T Consensus       223 ~~~~~~-~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~-----~-  295 (368)
T cd08300         223 KFELAK-KFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQ-----E-  295 (368)
T ss_pred             HHHHHH-HcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCC-----c-
Confidence            999998 8999999998752 257888888886689999999997 5889999999886 9999999753211     0 


Q ss_pred             chhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          278 GVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      .......+. ++..+.++..+.+.  ..+.+.++++++.+|++++  .++++|+|+|+++||+.+.+++. .|++++
T Consensus       296 ~~~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~  368 (368)
T cd08300         296 ISTRPFQLV-TGRVWKGTAFGGWK--SRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK  368 (368)
T ss_pred             cccCHHHHh-hcCeEEEEEecccC--cHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence            111111222 23455555444332  2356788999999999875  58889999999999999987764 588874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.8e-41  Score=286.55  Aligned_cols=311  Identities=16%  Similarity=0.172  Sum_probs=256.8

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ++||.+.....       ++|.++|+++    ++|+.+||+||++++++|++|....+|..   ....+|...|+|..|+
T Consensus         7 ~CKAAV~w~a~-------~PL~IEei~V----~pPka~EVRIKI~~t~vCHTD~~~~~g~~---~~~~fP~IlGHEaaGI   72 (375)
T KOG0022|consen    7 TCKAAVAWEAG-------KPLVIEEIEV----APPKAHEVRIKILATGVCHTDAYVWSGKD---PEGLFPVILGHEAAGI   72 (375)
T ss_pred             EEeEeeeccCC-------CCeeEEEEEe----CCCCCceEEEEEEEEeeccccceeecCCC---ccccCceEecccceeE
Confidence            46666666443       8999999999    88999999999999999999999998753   2333455555599999


Q ss_pred             EEEeccCCCCCCCCCEEEec---------------------------------------------------cCCeeeEEe
Q 042784           92 ARVIRSKDSKYSDGDIVLRA---------------------------------------------------FLPVAEYSL  120 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~---------------------------------------------------~g~~a~~~~  120 (356)
                      |+.+|.+|.++++||+|+-.                                                   ..+|+||.+
T Consensus        73 VESvGegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTV  152 (375)
T KOG0022|consen   73 VESVGEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTV  152 (375)
T ss_pred             EEEecCCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEE
Confidence            99999999999999999920                                                   047999999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      ++...+.. |  ++..+++. ++.|.|...|+|.|..+.+++++|++|.|.|- |++|+++++-||+.|+ +|++++.++
T Consensus       153 v~~~~v~k-I--d~~aPl~k-vcLLgCGvsTG~GAa~~~Akv~~GstvAVfGL-G~VGLav~~Gaka~GAsrIIgvDiN~  227 (375)
T KOG0022|consen  153 VDDISVAK-I--DPSAPLEK-VCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGL-GGVGLAVAMGAKAAGASRIIGVDINP  227 (375)
T ss_pred             eecceeEe-c--CCCCChhh-eeEeeccccccchhhhhhcccCCCCEEEEEec-chHHHHHHHhHHhcCcccEEEEecCH
Confidence            99988844 5  66788888 79999999999999999999999999999996 9999999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCceeecCCh-hhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEecccccccccccc
Q 042784          200 DNVKLLKEEFGYDDAFNYNSE-MSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVWTER  276 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~-~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~  276 (356)
                      ++.+.++ +||+.+++|..+. ....+.|.++|++|+|+-|||+|+ +.+.+++.+...+ |+-+.+|......     .
T Consensus       228 ~Kf~~ak-~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~-----~  301 (375)
T KOG0022|consen  228 DKFEKAK-EFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQ-----E  301 (375)
T ss_pred             HHHHHHH-hcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCc-----c
Confidence            9999999 9999999998743 348889999999999999999998 4888999999888 9999999876522     1


Q ss_pred             cchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCe--eeeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          277 DGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKI--RSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                       ....... +.++.++.+...+.+..  ...+..+.+.+.++++  ...|++.+||+++++||++|.+++.. |.|+.
T Consensus       302 -i~~~p~~-l~~GR~~~Gs~FGG~K~--~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~  374 (375)
T KOG0022|consen  302 -ISTRPFQ-LVTGRTWKGSAFGGFKS--KSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLW  374 (375)
T ss_pred             -cccchhh-hccccEEEEEecccccc--hhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEe
Confidence             1122222 33466667776666543  2456667777777765  46799999999999999999999876 77765

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.3e-40  Score=307.33  Aligned_cols=306  Identities=19%  Similarity=0.187  Sum_probs=249.2

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ++++|.+.+.+       +.+.+++++.    |.++++||+|||.++++|++|++.+.|... ....|..+|  +|++|+
T Consensus         9 ~~~~~~~~~~~-------~~~~~~~~~~----p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~-~~~~p~i~G--~E~~G~   74 (357)
T PLN02514          9 KTTGWAARDPS-------GHLSPYTYTL----RKTGPEDVVIKVIYCGICHTDLHQIKNDLG-MSNYPMVPG--HEVVGE   74 (357)
T ss_pred             eEEEEEEecCC-------CCceEEeecC----CCCCCCcEEEEEEEeccChHHHHhhcCCcC-cCCCCccCC--ceeeEE
Confidence            36788877653       6688888765    778999999999999999999998886432 112234444  599999


Q ss_pred             EEEeccCCCCCCCCCEEEec-------------------------------------cCCeeeEEeecCCcccccCCCCC
Q 042784           92 ARVIRSKDSKYSDGDIVLRA-------------------------------------FLPVAEYSLLPCDLLTRKLDPAS  134 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~-------------------------------------~g~~a~~~~v~~~~~~~~i~~P~  134 (356)
                      |+++|+++++|++||+|++.                                     .|+|+||++++.+.++++   |+
T Consensus        75 Vv~vG~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~  151 (357)
T PLN02514         75 VVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKI---PE  151 (357)
T ss_pred             EEEECCCcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEEC---CC
Confidence            99999999999999999731                                     388999999999887554   99


Q ss_pred             CCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce
Q 042784          135 GIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA  214 (356)
Q Consensus       135 ~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v  214 (356)
                      ++++++ ++++++++.|||+++......++|++|+|+|+ |++|++++|+||..|++|++++.++++.+.+.+++|++.+
T Consensus       152 ~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~  229 (357)
T PLN02514        152 GMAPEQ-AAPLLCAGVTVYSPLSHFGLKQSGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDY  229 (357)
T ss_pred             CCCHHH-hhhhhhhHHHHHHHHHHcccCCCCCeEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEE
Confidence            999998 78999999999999987676789999999975 9999999999999999999888888877766548999877


Q ss_pred             eecCChhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEE
Q 042784          215 FNYNSEMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKME  293 (356)
Q Consensus       215 ~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (356)
                      +++.+ .   +.+.+.+ .++|++|||+|. ..+..++++++++|+++.+|.....        ...+...++.+++++.
T Consensus       230 i~~~~-~---~~~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~--------~~~~~~~~~~~~~~i~  296 (357)
T PLN02514        230 LVSSD-A---AEMQEAA-DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTP--------LQFVTPMLMLGRKVIT  296 (357)
T ss_pred             ecCCC-h---HHHHHhc-CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCC--------CcccHHHHhhCCcEEE
Confidence            77654 2   2344444 369999999996 5888999999999999999976431        1233445667888998


Q ss_pred             EEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          294 GFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      ++...+.     ..++++++++.+|++++.++ +|+++|+.+||+.+.+++..||+|++++.
T Consensus       297 g~~~~~~-----~~~~~~~~~~~~g~l~~~i~-~~~l~~~~~A~~~~~~~~~~gk~v~~~~~  352 (357)
T PLN02514        297 GSFIGSM-----KETEEMLEFCKEKGLTSMIE-VVKMDYVNTAFERLEKNDVRYRFVVDVAG  352 (357)
T ss_pred             EEecCCH-----HHHHHHHHHHHhCCCcCcEE-EEcHHHHHHHHHHHHcCCCceeEEEEccc
Confidence            8866542     45788999999999988774 89999999999999999988999998763

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.7e-40  Score=303.02  Aligned_cols=285  Identities=15%  Similarity=0.095  Sum_probs=235.7

Q ss_pred             CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEE
Q 042784           30 DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVL  109 (356)
Q Consensus        30 ~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~  109 (356)
                      +.+++++.|.    |.|+++||+|||.++++|++|.+.+.|..... .+|..+|  +|++|+|+++|++++.+++||+|+
T Consensus        13 ~~l~~~~~p~----P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~-~~p~i~G--~e~~G~V~~vG~~v~~~~~Gd~V~   85 (329)
T TIGR02822        13 GPLRFVERPV----PRPGPGELLVRVRACGVCRTDLHVSEGDLPVH-RPRVTPG--HEVVGEVAGRGADAGGFAVGDRVG   85 (329)
T ss_pred             CCceEEeCCC----CCCCCCeEEEEEEEEeecchhHHHHcCCCCCC-CCCccCC--cceEEEEEEECCCCcccCCCCEEE
Confidence            5789988755    78999999999999999999999998753211 2234445  599999999999999999999997


Q ss_pred             ec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHh
Q 042784          110 RA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVL  159 (356)
Q Consensus       110 ~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~  159 (356)
                      +.                              .|+|+||+.++.+.++.+   |+++++++ ++++++.+.|||+++. .
T Consensus        86 ~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~l---P~~~~~~~-aa~l~~~~~ta~~~~~-~  160 (329)
T TIGR02822        86 IAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRL---PTGYDDVE-LAPLLCAGIIGYRALL-R  160 (329)
T ss_pred             EcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEEC---CCCCCHHH-hHHHhccchHHHHHHH-h
Confidence            31                              389999999999888554   99999998 7889999999999996 5


Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEE
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      +++++|++|||+|+ |++|++++|+|+..|++|++++++++++++++ ++|+++++++.+ ..         .+++|+++
T Consensus       161 ~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~-~~Ga~~vi~~~~-~~---------~~~~d~~i  228 (329)
T TIGR02822       161 ASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGAAARRLAL-ALGAASAGGAYD-TP---------PEPLDAAI  228 (329)
T ss_pred             cCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HhCCceeccccc-cC---------cccceEEE
Confidence            88999999999997 99999999999999999999999999999999 999998887542 10         13689999


Q ss_pred             ECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcC
Q 042784          240 DNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEG  318 (356)
Q Consensus       240 d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  318 (356)
                      ++.+. ..+..++++++++|+++.+|......       ...+...++.+++++.+.....     .+.+.++++++.+|
T Consensus       229 ~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~-------~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g  296 (329)
T TIGR02822       229 LFAPAGGLVPPALEALDRGGVLAVAGIHLTDT-------PPLNYQRHLFYERQIRSVTSNT-----RADAREFLELAAQH  296 (329)
T ss_pred             ECCCcHHHHHHHHHhhCCCcEEEEEeccCccC-------CCCCHHHHhhCCcEEEEeecCC-----HHHHHHHHHHHHhC
Confidence            88765 58899999999999999999753311       1123445567788888765432     24567889999999


Q ss_pred             CeeeeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          319 KIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       319 ~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      ++++ ++++|+|+|+++||+.+.+++..||+|+
T Consensus       297 ~i~~-i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       297 GVRV-TTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             CCee-EEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence            9974 5789999999999999999999999987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-40  Score=304.40  Aligned_cols=311  Identities=19%  Similarity=0.178  Sum_probs=242.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ||++++...        +.+++++.++    |.| .++||+|||.++++|++|.+.+.+.  +....|..+|  +|++|+
T Consensus         1 Mka~~~~~~--------~~~~~~~~~~----P~~~~~~evlV~v~~~gi~~~D~~~~~~~--~~~~~p~i~G--~e~~G~   64 (347)
T PRK10309          1 MKSVVNDTD--------GIVRVAESPI----PEIKHQDDVLVKVASSGLCGSDIPRIFKN--GAHYYPITLG--HEFSGY   64 (347)
T ss_pred             CceEEEeCC--------CceEEEECCC----CCCCCCCEEEEEEEEEEEchhcHHHHhCC--CCCCCCcccc--cceEEE
Confidence            567777643        3588888765    666 5899999999999999998754321  1112234444  599999


Q ss_pred             EEEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           92 ARVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      |+++|+++++|++||+|+..                             .|+|+||+.++++.++.+   |+++++++ +
T Consensus        65 V~~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~l---P~~~s~~~-a  140 (347)
T PRK10309         65 VEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFAL---PTDMPIED-G  140 (347)
T ss_pred             EEEeCCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEEC---cCCCCHHH-h
Confidence            99999999999999999831                             489999999999887554   99999988 5


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      +.+ ....++++++ +..++++|++|+|+|+ |++|++++|+|+.+|++ |+++++++++.+.++ ++|+++++++++ .
T Consensus       141 a~~-~~~~~~~~~~-~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~~~~-~  215 (347)
T PRK10309        141 AFI-EPITVGLHAF-HLAQGCEGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSEKLALAK-SLGAMQTFNSRE-M  215 (347)
T ss_pred             hhh-hHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCceEecCcc-c
Confidence            544 3566688886 4678899999999985 99999999999999995 788988999999998 899998998875 3


Q ss_pred             hHHHHHHHHC-CCCce-EEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecc
Q 042784          222 SFDAALTKYF-PNGID-VYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIG  298 (356)
Q Consensus       222 ~~~~~i~~~~-~~~~d-~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (356)
                      + .+.+.+++ +.++| ++|||+|.. .+..++++++++|+++.+|......     .........++.+++++.++..+
T Consensus       216 ~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~~~~i~g~~~~  289 (347)
T PRK10309        216 S-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDL-----HLTSATFGKILRKELTVIGSWMN  289 (347)
T ss_pred             C-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCc-----ccChhhhhHHhhcCcEEEEEecc
Confidence            3 44566665 45788 999999975 8899999999999999999764311     11111233567788999987654


Q ss_pred             cccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          299 SHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       299 ~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      .......+.++++++++.+|.+.  +.++++|+|+|+++|++.+.+++..||+|++++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  347 (347)
T PRK10309        290 YSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQIP  347 (347)
T ss_pred             ccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeCC
Confidence            22111135678899999999984  678899999999999999999888899999864

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=4e-40  Score=305.22  Aligned_cols=308  Identities=16%  Similarity=0.169  Sum_probs=248.9

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ++|++++...+       +.+++++++.    |.++++||+|||.++++|++|++.+.|...    ..+|...++|++|+
T Consensus         2 ~~ka~~~~~~~-------~~~~~~~~~~----p~~~~~evlVkv~~~gi~~sD~~~~~g~~~----~~~p~i~G~e~~G~   66 (365)
T cd08277           2 KCKAAVAWEAG-------KPLVIEEIEV----APPKANEVRIKMLATSVCHTDILAIEGFKA----TLFPVILGHEGAGI   66 (365)
T ss_pred             ccEEEEEccCC-------CCcEEEEEEC----CCCCCCEEEEEEEEEeechhhHHHhcCCCC----CCCCeecccceeEE
Confidence            47788777542       4588888866    778999999999999999999999887432    23344445599999


Q ss_pred             EEEeccCCCCCCCCCEEEec-------------------------------------------------cCCeeeEEeec
Q 042784           92 ARVIRSKDSKYSDGDIVLRA-------------------------------------------------FLPVAEYSLLP  122 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~-------------------------------------------------~g~~a~~~~v~  122 (356)
                      |+++|++++++++||+|+..                                                 .|+|+||+.++
T Consensus        67 V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~  146 (365)
T cd08277          67 VESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVD  146 (365)
T ss_pred             EEeeCCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEc
Confidence            99999999999999999831                                                 37899999999


Q ss_pred             CCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHH
Q 042784          123 CDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDN  201 (356)
Q Consensus       123 ~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~  201 (356)
                      .+.++.+   |+++++++ ++.+.+++.|||+++...+++++|++|+|+|+ |++|++++++|+.+|+ +|+++++++++
T Consensus       147 ~~~~~~l---P~~l~~~~-aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~  221 (365)
T cd08277         147 ENYVAKI---DPAAPLEH-VCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDK  221 (365)
T ss_pred             hhheEEC---CCCCCHHH-hhHhcchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHH
Confidence            9888555   99999998 78899999999999877788999999999985 9999999999999999 89999999999


Q ss_pred             HHHHHHHhCCCceeecCCh-hhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEecccccccccccccc
Q 042784          202 VKLLKEEFGYDDAFNYNSE-MSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVWTERDG  278 (356)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~-~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~  278 (356)
                      ++.++ ++|+++++++.+. .++.+.+++++++++|++|||+|. ..+..++++++++ |+++.+|...+..       .
T Consensus       222 ~~~~~-~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~-------~  293 (365)
T cd08277         222 FEKAK-EFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAE-------L  293 (365)
T ss_pred             HHHHH-HcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccc-------c
Confidence            99998 8999989887642 245677877776789999999996 5778999999885 9999999764311       1


Q ss_pred             hhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          279 VRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      ..+...++. ++++.++..+++.  ....++++++++.++.+.  +.++++|+|+|+++||+.+.+++ ..|+++
T Consensus       294 ~~~~~~~~~-~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i  364 (365)
T cd08277         294 SIRPFQLIL-GRTWKGSFFGGFK--SRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-CIRTVI  364 (365)
T ss_pred             ccCHhHHhh-CCEEEeeecCCCC--hHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-CceEee
Confidence            112223332 6788877665542  224578899999988754  57888999999999999998877 468886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=100.00  E-value=6.1e-40  Score=276.75  Aligned_cols=340  Identities=41%  Similarity=0.730  Sum_probs=296.7

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      ...++|+++.+.+ +.+...++.+++..+..+ ..+++++||||.++.+..|+.+..++......+.+++.+|..+.+.|
T Consensus         2 v~nkqvvLk~y~~-g~P~~~d~~~~~~~~el~-~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~G   79 (343)
T KOG1196|consen    2 VTNKQVILKNYVT-GFPTESDFEFTTTTVELR-VPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFG   79 (343)
T ss_pred             ccccEEEEeccCC-CCCccccceeeeeeeccc-CCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCc
Confidence            4578999999865 777778888877665432 56899999999999999999988777433344778899999888899


Q ss_pred             EEEEeccCCCCCCCCCEEEeccCCeeeEEeecCC-cccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEE
Q 042784           91 IARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCD-LLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVF  169 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~-~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  169 (356)
                      +...+.++.+++++||.|+ +.-+|.||.+++.. ...++|+.|.++++.....++..+++|||-.+.+++..+.|++|+
T Consensus        80 V~kVi~S~~~~~~~GD~v~-g~~gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~  158 (343)
T KOG1196|consen   80 VAKVIDSGHPNYKKGDLVW-GIVGWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVF  158 (343)
T ss_pred             eEEEEecCCCCCCcCceEE-EeccceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEE
Confidence            9999999999999999999 77799999999764 444567667777766666899999999999999999999999999


Q ss_pred             EEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHH
Q 042784          170 VSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEA  249 (356)
Q Consensus       170 V~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~  249 (356)
                      |.||+|.+|.++.|+||.+|++|++++.|+++..+++.+||.+..|||.++.++.+.+++..+.|+|+.||++|+..+..
T Consensus       159 VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDa  238 (343)
T KOG1196|consen  159 VSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDA  238 (343)
T ss_pred             EeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999668999999988899999999999999999


Q ss_pred             HHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeC
Q 042784          250 VLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYG  329 (356)
Q Consensus       250 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~  329 (356)
                      .+..|+..|+++.+|+.+..+..  .+....+....+.|.+.+.++-...+.+.+++.++.+..++++|+|+..-+..-.
T Consensus       239 vl~nM~~~gri~~CG~ISqYN~~--~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi~~G  316 (343)
T KOG1196|consen  239 VLLNMNLHGRIAVCGMISQYNLE--NPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDIADG  316 (343)
T ss_pred             HHHhhhhccceEeeeeehhcccc--CCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhHHHH
Confidence            99999999999999987753321  2233445667788999999998888888899999999999999999988887778


Q ss_pred             hhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          330 VESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       330 ~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      |+..++||.-|.+++..||.++++..
T Consensus       317 len~P~A~vglf~GkNvGKqiv~va~  342 (343)
T KOG1196|consen  317 LENGPSALVGLFHGKNVGKQLVKVAR  342 (343)
T ss_pred             HhccHHHHHHHhccCcccceEEEeec
Confidence            99999999999999999999999874

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=8.1e-40  Score=298.69  Aligned_cols=315  Identities=19%  Similarity=0.172  Sum_probs=257.8

Q ss_pred             eeeEEEecccCCCCCCC-CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTS-DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ||+++++++     +.+ +.+++++++.    |.+.++||+|||.++++|+.|++...|........|..+|  +|++|+
T Consensus         1 m~a~~~~~~-----~~~~~~~~~~~~~~----p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G--~e~~G~   69 (324)
T cd08292           1 MRAAVHTQF-----GDPADVLEIGEVPK----PTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGG--SEAVGV   69 (324)
T ss_pred             CeeEEEccC-----CChhHeEEEeecCC----CCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCC--cceEEE
Confidence            467777653     222 4588888865    6789999999999999999999988765432112233444  589999


Q ss_pred             EEEeccCCCCCCCCCEEEec--cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEE
Q 042784           92 ARVIRSKDSKYSDGDIVLRA--FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVF  169 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~--~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  169 (356)
                      |+++|++++++++||+|+..  .|+|++|+.++.+.++++   |+++++++ ++.+++.+++||+++. .+++++|++|+
T Consensus        70 V~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~i---p~~~~~~~-aa~~~~~~~ta~~~~~-~~~~~~g~~vl  144 (324)
T cd08292          70 VDAVGEGVKGLQVGQRVAVAPVHGTWAEYFVAPADGLVPL---PDGISDEV-AAQLIAMPLSALMLLD-FLGVKPGQWLI  144 (324)
T ss_pred             EEEeCCCCCCCCCCCEEEeccCCCcceeEEEEchHHeEEC---CCCCCHHH-hhhccccHHHHHHHHH-hhCCCCCCEEE
Confidence            99999999999999999932  589999999999887554   99999998 7888889999999985 58899999999


Q ss_pred             EEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHH
Q 042784          170 VSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLE  248 (356)
Q Consensus       170 V~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~  248 (356)
                      |+|++|.+|++++++|+.+|++|++++.++++.+.++ ++|+++++++.+ .++.+.+.++++ .++|++|||+|+....
T Consensus       145 I~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  222 (324)
T cd08292         145 QNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELR-ALGIGPVVSTEQ-PGWQDKVREAAGGAPISVALDSVGGKLAG  222 (324)
T ss_pred             EcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHH-hcCCCEEEcCCC-chHHHHHHHHhCCCCCcEEEECCCChhHH
Confidence            9999999999999999999999999998999999998 689988888876 678888888874 5899999999998889


Q ss_pred             HHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc-----hHHHHHHHHHHHHHcCCeeee
Q 042784          249 AVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD-----RFADFTVEMESYIKEGKIRSK  323 (356)
Q Consensus       249 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~g~i~~~  323 (356)
                      .++++++++|+++.+|.....      . ........+.+++++.++....+..     ...+.++++++++.+|.+.+.
T Consensus       223 ~~~~~l~~~g~~v~~g~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~  295 (324)
T cd08292         223 ELLSLLGEGGTLVSFGSMSGE------P-MQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP  295 (324)
T ss_pred             HHHHhhcCCcEEEEEecCCCC------C-CcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc
Confidence            999999999999999875321      1 1123334566899999887654321     234678889999999999876


Q ss_pred             eeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          324 HVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       324 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      +.+.|+++++.+|++.+.++...+|+|++
T Consensus       296 ~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         296 VEAVFDLGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             cccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence            77789999999999999988888899874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=2.2e-39  Score=298.62  Aligned_cols=295  Identities=15%  Similarity=0.120  Sum_probs=239.0

Q ss_pred             CeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEEe
Q 042784           31 HLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLR  110 (356)
Q Consensus        31 ~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~  110 (356)
                      .+++++.+.    |.++++||+|||.++++|++|.+...+........|..+  |+|++|+|+++|+++..+ +||||++
T Consensus        10 ~~~~~~~p~----P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~--GhE~~G~V~~vG~~v~~~-~GdrV~~   82 (349)
T TIGR03201        10 PMVKTRVEI----PELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLAL--GHEISGRVIQAGAGAASW-IGKAVIV   82 (349)
T ss_pred             CceEEeccC----CCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeec--cccceEEEEEeCCCcCCC-CCCEEEE
Confidence            378888755    779999999999999999999988743221111223444  459999999999999887 9999984


Q ss_pred             -----------------------------ccCCeeeEEeecCCcccccCCCCC------CCCccccccccCchhhhHHHH
Q 042784          111 -----------------------------AFLPVAEYSLLPCDLLTRKLDPAS------GIPFPDYLSSLGIPGFAAWVG  155 (356)
Q Consensus       111 -----------------------------~~g~~a~~~~v~~~~~~~~i~~P~------~~s~~~~aa~l~~~~~ta~~~  155 (356)
                                                   ..|+|+||+.++.+.++..   |+      ++++++ ++++++++.|||++
T Consensus        83 ~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~i---p~~~~~~~~~~~~~-~a~~~~~~~ta~~a  158 (349)
T TIGR03201        83 PAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVV---DEARLAAAGLPLEH-VSVVADAVTTPYQA  158 (349)
T ss_pred             CCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEEC---CcccccccCCCHHH-hhhhcchHHHHHHH
Confidence                                         1489999999999887554   76      899988 78899999999999


Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCCh--hhHHHHHHHHCC-
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSE--MSFDAALTKYFP-  232 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~--~~~~~~i~~~~~-  232 (356)
                      +. ..++++|++|+|+|+ |++|++++++|+..|++|++++++++++++++ ++|++.++++.+.  .++.+.++++++ 
T Consensus       159 ~~-~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~-~~Ga~~~i~~~~~~~~~~~~~~~~~t~~  235 (349)
T TIGR03201       159 AV-QAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK-GFGADLTLNPKDKSAREVKKLIKAFAKA  235 (349)
T ss_pred             HH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HhCCceEecCccccHHHHHHHHHhhccc
Confidence            96 478999999999998 99999999999999999999999999999998 8999988887652  357777888774 


Q ss_pred             CCce----EEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHH
Q 042784          233 NGID----VYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADF  307 (356)
Q Consensus       233 ~~~d----~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (356)
                      .++|    ++|||+|.. .+..++++++++|+++.+|.....        ...+...++.++.++.+....+     .+.
T Consensus       236 ~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~--------~~~~~~~~~~~~~~~~g~~~~~-----~~~  302 (349)
T TIGR03201       236 RGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAK--------TEYRLSNLMAFHARALGNWGCP-----PDR  302 (349)
T ss_pred             CCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCC--------cccCHHHHhhcccEEEEEecCC-----HHH
Confidence            4776    899999985 677889999999999999986431        1123345566677777765322     246


Q ss_pred             HHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          308 TVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       308 l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ++++++++.+|++.+  .++ +|+|+++++||+.+.+++..||+++++
T Consensus       303 ~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k~~~~~  349 (349)
T TIGR03201       303 YPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRRAILTP  349 (349)
T ss_pred             HHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccceEEecC
Confidence            788999999999865  444 799999999999999999899999853

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=2.9e-39  Score=298.24  Aligned_cols=305  Identities=16%  Similarity=0.171  Sum_probs=247.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCc--------cCCCccCc
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLY--------FPQFNLNQ   84 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~--------~~~~~~g~   84 (356)
                      ||+|++...        +.++++++++    |.++++||+||+.++++|+.|++.+.+......        ..+++...
T Consensus         1 mka~~~~~~--------~~l~~~~~~~----p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~   68 (351)
T cd08233           1 MKAARYHGR--------KDIRVEEVPE----PPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTL   68 (351)
T ss_pred             CceEEEecC--------CceEEEeccC----CCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCcee
Confidence            578888742        5688988765    778999999999999999999887653211000        01133344


Q ss_pred             eeeeeEEEEEeccCCCCCCCCCEEEe----------------------------c--cCCeeeEEeecCCcccccCCCCC
Q 042784           85 VILAFGIARVIRSKDSKYSDGDIVLR----------------------------A--FLPVAEYSLLPCDLLTRKLDPAS  134 (356)
Q Consensus        85 ~~~~~G~v~~vg~~v~~~~~Gd~V~~----------------------------~--~g~~a~~~~v~~~~~~~~i~~P~  134 (356)
                      |+|++|+|+++|++++++++||+|+.                            .  .|+|++|+.++.+.++.+   |+
T Consensus        69 G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l---P~  145 (351)
T cd08233          69 GHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKL---PD  145 (351)
T ss_pred             cccceEEEEEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEEC---cC
Confidence            45999999999999999999999983                            1  489999999999887555   99


Q ss_pred             CCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCc
Q 042784          135 GIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDD  213 (356)
Q Consensus       135 ~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~  213 (356)
                      ++++++ ++. ..++.|||+++ ..+++++|++|+|+|+ |++|.+++|+|+..|+ +|+++++++++.++++ ++|++.
T Consensus       146 ~~~~~~-aa~-~~~~~ta~~~l-~~~~~~~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~-~~ga~~  220 (351)
T cd08233         146 NVPLEE-AAL-VEPLAVAWHAV-RRSGFKPGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELAE-ELGATI  220 (351)
T ss_pred             CCCHHH-hhh-ccHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCE
Confidence            999988 444 47889999999 5788999999999985 9999999999999999 8999998999999998 899999


Q ss_pred             eeecCChhhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceE
Q 042784          214 AFNYNSEMSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVK  291 (356)
Q Consensus       214 v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (356)
                      ++++++ .++.+.+++.++ +++|++|||+|. ..+..++++++++|+++.+|.....        ...+...++.++++
T Consensus       221 ~i~~~~-~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~  291 (351)
T cd08233         221 VLDPTE-VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKP--------ISFNPNDLVLKEKT  291 (351)
T ss_pred             EECCCc-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCC--------CccCHHHHHhhCcE
Confidence            999887 678888888775 479999999985 5889999999999999999975421        12344556778899


Q ss_pred             EEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhH-HHHHHHHHcCCCc-ceEEE
Q 042784          292 MEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESF-LESLGSLFSSSNI-GKVVI  351 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~-~~a~~~~~~~~~~-gkvvi  351 (356)
                      +.+.....     .+.++++++++.++.++  +.++++|+++|+ ++|++.+.+++.. +|+|+
T Consensus       292 i~g~~~~~-----~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~  350 (351)
T cd08233         292 LTGSICYT-----REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV  350 (351)
T ss_pred             EEEEeccC-----cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence            98875432     25678999999999995  457789999996 7899999988874 89987

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=1.9e-39  Score=272.05  Aligned_cols=320  Identities=19%  Similarity=0.245  Sum_probs=259.0

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      ...|++.|..++    ...+.+++.++++    |....++|+||.+|+.|||+|+.+++|.+.-.  +++|..-|.||.|
T Consensus        18 ~~~kalvY~~hg----dP~kVlql~~~~~----p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvr--P~~PAVgGnEGv~   87 (354)
T KOG0025|consen   18 ARSKALVYSEHG----DPAKVLQLKNLEL----PAVPGSDVLVKMLAAPINPSDINQIQGVYPVR--PELPAVGGNEGVG   87 (354)
T ss_pred             cccceeeecccC----CchhhheeecccC----CCCCCCceeeeeeecCCChHHhhhhccccCCC--CCCCcccCCcceE
Confidence            346788888876    4458889999987    67777789999999999999999999877654  4455555569999


Q ss_pred             EEEEeccCCCCCCCCCEEEe---ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           91 IARVIRSKDSKYSDGDIVLR---AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~---~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      .|+.+|+++++|++||.|+.   +.|+|++|.+..++.++. +  ++.++++. ||++....+|||.+|.+.-++.+||+
T Consensus        88 eVv~vGs~vkgfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~-v--d~~~pl~~-AAT~~VNP~TAyrmL~dfv~L~~GD~  163 (354)
T KOG0025|consen   88 EVVAVGSNVKGFKPGDWVIPLSANLGTWRTEAVFSESDLIK-V--DKDIPLAS-AATLSVNPCTAYRMLKDFVQLNKGDS  163 (354)
T ss_pred             EEEEecCCcCccCCCCeEeecCCCCccceeeEeecccceEE-c--CCcCChhh-hheeccCchHHHHHHHHHHhcCCCCe
Confidence            99999999999999999993   469999999999998844 4  77899999 89999999999999999999999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHC--CCCceEEEECC
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYF--PNGIDVYLDNV  242 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~--~~~~d~vld~~  242 (356)
                      |.-+||.+++|.+.+|+||++|.+-+-+.|+-.+.+.+++   .+||++|+...+  --.....+..  ..++.+.|+|+
T Consensus       164 vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeee--l~~~~~~k~~~~~~~prLalNcV  241 (354)
T KOG0025|consen  164 VIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEE--LRDRKMKKFKGDNPRPRLALNCV  241 (354)
T ss_pred             eeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHH--hcchhhhhhhccCCCceEEEecc
Confidence            9999999999999999999999977777766555544432   699999985432  1111122222  34799999999


Q ss_pred             chhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc------hHHHHHHHHHHHHH
Q 042784          243 GGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD------RFADFTVEMESYIK  316 (356)
Q Consensus       243 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~  316 (356)
                      |+....+..+.|..+|+++++|-.+..       ....+...++.|+++++|+++..|..      .+.+.++++++|+.
T Consensus       242 GGksa~~iar~L~~GgtmvTYGGMSkq-------Pv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~  314 (354)
T KOG0025|consen  242 GGKSATEIARYLERGGTMVTYGGMSKQ-------PVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYR  314 (354)
T ss_pred             CchhHHHHHHHHhcCceEEEecCccCC-------CcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHH
Confidence            999888999999999999999976541       23346677899999999999988753      34477899999999


Q ss_pred             cCCeeeeeeEEeChhhHHHHHHHHHcC-CCcceEEEEe
Q 042784          317 EGKIRSKHVIYYGVESFLESLGSLFSS-SNIGKVVIQV  353 (356)
Q Consensus       317 ~g~i~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~~  353 (356)
                      .|+|..+.....+|++...|++..... ...||-++.+
T Consensus       315 ~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~  352 (354)
T KOG0025|consen  315 RGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIVL  352 (354)
T ss_pred             cCeeccccceeeechhhhHHHHHHHHHhccCCceEEEe
Confidence            999999988889999998888864433 3335666554

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=6.3e-39  Score=298.45  Aligned_cols=315  Identities=15%  Similarity=0.118  Sum_probs=234.8

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCC-----CCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCcee
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDS-----IPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVI   86 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~-----~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~   86 (356)
                      .||++++.+.        ++++++++++|.  |.     |.++||||||.++|||++|++.+.|...  ...|+.+|  +
T Consensus         2 ~mka~v~~~~--------~~~~~~e~~~P~--~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~--~~~p~i~G--h   67 (393)
T TIGR02819         2 GNRGVVYLGP--------GKVEVQDIDYPK--LELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT--APTGLVLG--H   67 (393)
T ss_pred             CceEEEEecC--------CceeEEeccCCc--ccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC--CCCCcccc--c
Confidence            4778777643        568898887632  22     2379999999999999999999886421  12344454  5


Q ss_pred             eeeEEEEEeccCCCCCCCCCEEEec---------------------------------------cCCeeeEEeecCC--c
Q 042784           87 LAFGIARVIRSKDSKYSDGDIVLRA---------------------------------------FLPVAEYSLLPCD--L  125 (356)
Q Consensus        87 ~~~G~v~~vg~~v~~~~~Gd~V~~~---------------------------------------~g~~a~~~~v~~~--~  125 (356)
                      |++|+|+++|++|+++++||||++.                                       .|+|+||+++++.  .
T Consensus        68 E~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~  147 (393)
T TIGR02819        68 EITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFN  147 (393)
T ss_pred             eeEEEEEEEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCc
Confidence            9999999999999999999999641                                       3789999999974  4


Q ss_pred             ccccCCCCCCCCc----cccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChH
Q 042784          126 LTRKLDPASGIPF----PDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDD  200 (356)
Q Consensus       126 ~~~~i~~P~~~s~----~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~  200 (356)
                      +++ +  |++++.    ++ ++++.+++.+||+++. .+++++|++|+|.|+ |++|++++|+|+.+|++ |++++.+++
T Consensus       148 l~~-v--P~~~~~~~~~~~-~a~l~~~~~ta~~a~~-~~~~~~g~~VlV~G~-G~iG~~aiqlAk~~Ga~~vi~~d~~~~  221 (393)
T TIGR02819       148 LLK-F--PDRDQALEKIRD-LTMLSDIFPTGYHGAV-TAGVGPGSTVYIAGA-GPVGLAAAASAQLLGAAVVIVGDLNPA  221 (393)
T ss_pred             eEE-C--CCcccccccccc-eeeeccHHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            534 4  776643    34 5788889999999986 578999999999765 99999999999999996 555567788


Q ss_pred             HHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchh---------------hHHHHHHhcccCCEEEEEe
Q 042784          201 NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGK---------------MLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~---------------~~~~~~~~l~~~G~~v~~g  264 (356)
                      ++++++ ++|++ .+++....++.+.+.++++ .++|++|||+|.+               .+.+++++++++|+++.+|
T Consensus       222 r~~~a~-~~Ga~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       222 RLAQAR-SFGCE-TVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             HHHHHH-HcCCe-EEecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            999999 89997 4665432467777888774 4899999999974               7999999999999999999


Q ss_pred             cccccccccc-----cccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eee-EEeChhhHHHH
Q 042784          265 MISQYNKVWT-----ERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHV-IYYGVESFLES  336 (356)
Q Consensus       265 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~-~~~~~~~~~~a  336 (356)
                      ..........     .............+++++.+...     ...++..++++++.+|++.+  .++ ++|+|+|+++|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~-----~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a  374 (393)
T TIGR02819       300 LYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQT-----PVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEG  374 (393)
T ss_pred             ecCCcccccccccccccccccchHHhhccCceEEeccC-----ChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHH
Confidence            8632110000     00011123334456666665211     11234567899999999875  455 68999999999


Q ss_pred             HHHHHcCCCcceEEEEec
Q 042784          337 LGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       337 ~~~~~~~~~~gkvvi~~~  354 (356)
                      |+.+.+++ .+|+++++.
T Consensus       375 ~~~~~~~~-~~Kvvi~~~  391 (393)
T TIGR02819       375 YAEFDAGA-AKKFVIDPH  391 (393)
T ss_pred             HHHHhhCC-ceEEEEeCC
Confidence            99998775 489999763

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=5.9e-39  Score=301.41  Aligned_cols=314  Identities=18%  Similarity=0.131  Sum_probs=238.5

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhh-cCCCCCCc---cCCCccCceee
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATM-TGTNDGLY---FPQFNLNQVIL   87 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~-~g~~~~~~---~~~~~~g~~~~   87 (356)
                      .|+++.+..        ++.+++++++.    |+++++||+|||.++|+|++|++.+ .|......   ..++|...|+|
T Consensus         2 ~~~a~~~~~--------~~~l~~~e~p~----P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE   69 (410)
T cd08238           2 KTKAWRMYG--------KGDLRLEKFEL----PEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHE   69 (410)
T ss_pred             CcEEEEEEc--------CCceEEEecCC----CCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccc
Confidence            367777763        24688888755    7789999999999999999999976 34211110   01234445569


Q ss_pred             eeEEEEEeccCCC-CCCCCCEEEec------------------cCCeeeEEeecCC----cccccCCCCCCCCccccccc
Q 042784           88 AFGIARVIRSKDS-KYSDGDIVLRA------------------FLPVAEYSLLPCD----LLTRKLDPASGIPFPDYLSS  144 (356)
Q Consensus        88 ~~G~v~~vg~~v~-~~~~Gd~V~~~------------------~g~~a~~~~v~~~----~~~~~i~~P~~~s~~~~aa~  144 (356)
                      ++|+|+++|++++ +|++||||++.                  .|+|+||++++.+    .+++ +  |+++++++ ++ 
T Consensus        70 ~~G~V~~vG~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~-l--P~~l~~~~-aa-  144 (410)
T cd08238          70 FAGTILKVGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLL-I--YEGDGYAE-AS-  144 (410)
T ss_pred             cEEEEEEeCCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEE-C--CCCCCHHH-Hh-
Confidence            9999999999998 69999999842                  3899999999987    3434 3  99999988 44 


Q ss_pred             cCchh---hhHHHHH--------HHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHh-
Q 042784          145 LGIPG---FAAWVGI--------EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC---KVVGSTGSDDNVKLLKEEF-  209 (356)
Q Consensus       145 l~~~~---~ta~~~l--------~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~---~V~~~~~s~~~~~~~~~~~-  209 (356)
                      +..++   .+++.++        ...+++++|++|+|+|++|++|++++|+|+.+|+   +|++++.++++++.++ ++ 
T Consensus       145 l~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~-~~~  223 (410)
T cd08238         145 LVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQ-RLF  223 (410)
T ss_pred             hcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHH-Hhc
Confidence            33222   2233332        2356789999999999889999999999999854   8999999999999998 66 


Q ss_pred             -------CCC-ceeecCChhhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccch
Q 042784          210 -------GYD-DAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGV  279 (356)
Q Consensus       210 -------g~~-~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  279 (356)
                             |++ .++++++..++.+.++++++ .++|++||++|. ..+..++++++++|+++.++......     ....
T Consensus       224 ~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~-----~~~~  298 (410)
T cd08238         224 PPEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKN-----FSAP  298 (410)
T ss_pred             cccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCC-----cccc
Confidence                   665 46776532467788888875 489999999985 68899999999999887764422100     0112


Q ss_pred             hhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          280 RNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      .+...++.+++++.++...+     .+.++++++++.+|++++  .++++|+|+++++||+.+. ++..||+|+.+.
T Consensus       299 ~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~~  369 (410)
T cd08238         299 LNFYNVHYNNTHYVGTSGGN-----TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYTQ  369 (410)
T ss_pred             ccHHHhhhcCcEEEEeCCCC-----HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEEECC
Confidence            34556778899998875432     245788999999999987  6888999999999999998 778899999874

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=3.1e-39  Score=298.37  Aligned_cols=306  Identities=17%  Similarity=0.119  Sum_probs=229.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..      +.++ ++++++++    |+|+++||||||.++++|++|++.+.|.........+|...|+|++|+|
T Consensus         1 mka~~~~~------~~~~-l~~~~~p~----p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V   69 (355)
T cd08230           1 MKAIAVKP------GKPG-VRVVDIPE----PEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVV   69 (355)
T ss_pred             CceeEecC------CCCC-CeEEeCCC----CCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEE
Confidence            46777762      2223 88888755    7889999999999999999999999875322111123344455999999


Q ss_pred             EEeccCCCCCCCCCEEEec--------------------------------cCCeeeEEeecCCcccccCCCCCCCCccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA--------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPD  140 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~  140 (356)
                      +++|++ +.|++||||+..                                .|+|+||++++++.++.+   |++++ +.
T Consensus        70 ~~vG~~-~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~---P~~~~-~~  144 (355)
T cd08230          70 EEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKV---PPSLA-DV  144 (355)
T ss_pred             EEecCC-CCCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEEC---CCCCC-cc
Confidence            999999 999999999831                                278999999999988555   99999 43


Q ss_pred             cccccCchhhhHHHHHHHh------CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC---ChHHHHHHHHHhCC
Q 042784          141 YLSSLGIPGFAAWVGIEVL------GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG---SDDNVKLLKEEFGY  211 (356)
Q Consensus       141 ~aa~l~~~~~ta~~~l~~~------~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~---s~~~~~~~~~~~g~  211 (356)
                        +++..++.++++++...      .+.++|++|+|+|+ |++|++++|+||..|++|+++++   +++++++++ ++|+
T Consensus       145 --a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~-~~Ga  220 (355)
T cd08230         145 --GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE-ELGA  220 (355)
T ss_pred             --eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCC
Confidence              66777777766655322      23578999999996 99999999999999999999987   688999998 8999


Q ss_pred             CceeecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccch-hhhhhhhccc
Q 042784          212 DDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGV-RNLLNMIGKE  289 (356)
Q Consensus       212 ~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~  289 (356)
                      +. +++.+ .++.+ ..  ..+++|+||||+|.. .+..++++++++|+++.+|...+..   ..+... .....++.++
T Consensus       221 ~~-v~~~~-~~~~~-~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~---~~~~~~~~~~~~~~~k~  292 (355)
T cd08230         221 TY-VNSSK-TPVAE-VK--LVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGR---EFEVDGGELNRDLVLGN  292 (355)
T ss_pred             EE-ecCCc-cchhh-hh--hcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCC---ccccChhhhhhhHhhcC
Confidence            85 56654 34433 21  235799999999975 7899999999999999999865411   001110 0134567789


Q ss_pred             eEEEEEecccccchHHHHHHHHHHHHHcCC------eeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          290 VKMEGFMIGSHMDRFADFTVEMESYIKEGK------IRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~------i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +++.++...+.     +.++++++++.++.      +++.++++|+++|+++||+.+.++.  +|+|+++
T Consensus       293 ~~i~g~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~~  355 (355)
T cd08230         293 KALVGSVNANK-----RHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIEW  355 (355)
T ss_pred             cEEEEecCCch-----hhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEeeC
Confidence            99988754432     34567777777665      6677889999999999999887554  5999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=3.2e-39  Score=291.56  Aligned_cols=315  Identities=22%  Similarity=0.269  Sum_probs=237.5

Q ss_pred             CCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCc-cCCCccCceeeeeEE---EEEec-cCCCC
Q 042784           27 PTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLY-FPQFNLNQVILAFGI---ARVIR-SKDSK  101 (356)
Q Consensus        27 ~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~~~~~~G~---v~~vg-~~v~~  101 (356)
                      ++......++.++    |.|.+++++|++.++++||.|+.++.|...... ...+|...+.++.|+   +...| ..+..
T Consensus        15 ~~~~~~~~~~~~i----P~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~   90 (347)
T KOG1198|consen   15 GGGEVLFSEEVPI----PEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGG   90 (347)
T ss_pred             CCcceEEeecccC----CCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccc
Confidence            3334445555544    899999999999999999999999997543332 012332223344444   44445 34455


Q ss_pred             CCCCCEEEe--ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhC------CCCCCCEEEEEcC
Q 042784          102 YSDGDIVLR--AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLG------QPKSGSNVFVSAA  173 (356)
Q Consensus       102 ~~~Gd~V~~--~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~------~~~~g~~VlV~g~  173 (356)
                      +..||++..  ..|+|+||+++|...+++.   |+++++++ +|+++.++.|||.++.+.+      ++++|++|||+||
T Consensus        91 ~~~g~~~~~~~~~g~~aey~v~p~~~~~~~---P~~l~~~~-aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~gg  166 (347)
T KOG1198|consen   91 WVHGDAVVAFLSSGGLAEYVVVPEKLLVKI---PESLSFEE-AAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGG  166 (347)
T ss_pred             eEeeeEEeeccCCCceeeEEEcchhhccCC---CCccChhh-hhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeC
Confidence            778887772  3499999999998777555   99999999 8999999999999999989      8999999999999


Q ss_pred             CChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHh
Q 042784          174 AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNH  253 (356)
Q Consensus       174 ~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~  253 (356)
                      +|++|++++|+|++.|+..+++++++++.++++ ++|+++++||++ .++.+.+.+.++++||+||||+|+.....+..+
T Consensus       167 sggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k-~lGAd~vvdy~~-~~~~e~~kk~~~~~~DvVlD~vg~~~~~~~~~~  244 (347)
T KOG1198|consen  167 SGGVGTAAIQLAKHAGAIKVVTACSKEKLELVK-KLGADEVVDYKD-ENVVELIKKYTGKGVDVVLDCVGGSTLTKSLSC  244 (347)
T ss_pred             CcHHHHHHHHHHHhcCCcEEEEEcccchHHHHH-HcCCcEeecCCC-HHHHHHHHhhcCCCccEEEECCCCCccccchhh
Confidence            999999999999999964444555999999999 999999999999 899999999887799999999999888888889


Q ss_pred             cccCCEEEEEecccccccccccccchhhhhhhhcc---ceEEEEEeccc-ccchHHHHHHHHHHHHHcCCeeeeeeEEeC
Q 042784          254 VNVHARIILCGMISQYNKVWTERDGVRNLLNMIGK---EVKMEGFMIGS-HMDRFADFTVEMESYIKEGKIRSKHVIYYG  329 (356)
Q Consensus       254 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~  329 (356)
                      +...|....++............  . .+.....+   ...+.+..... .....++.++.+.++++.+++++.+.+.||
T Consensus       245 l~~~g~~~~i~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp~i~~~~p  321 (347)
T KOG1198|consen  245 LLKGGGGAYIGLVGDELANYKLD--D-LWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKPVIDSVYP  321 (347)
T ss_pred             hccCCceEEEEeccccccccccc--c-chhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcccCCcceeee
Confidence            88888655554433211000000  0 00011111   11111111111 112345889999999999999999999999


Q ss_pred             hhhHHHHHHHHHcCCCcceEEEEec
Q 042784          330 VESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       330 ~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      ++++.+|++.+.++...||+++++.
T Consensus       322 ~~~~~ea~~~~~~~~~~GK~vl~~~  346 (347)
T KOG1198|consen  322 FSQAKEAFEKLEKSHATGKVVLEKD  346 (347)
T ss_pred             HHHHHHHHHHHhhcCCcceEEEEec
Confidence            9999999999999999999999875

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=8.6e-39  Score=289.30  Aligned_cols=291  Identities=12%  Similarity=0.110  Sum_probs=222.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeC-hhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISID-PYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~-~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +|++++..        ++.+++++.+.    |+|+++||||||.+++|| .+|++.+.|.........+|...|+|++|+
T Consensus         2 ~ka~~~~~--------~~~l~~~e~~~----p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~   69 (308)
T TIGR01202         2 TQAIVLSG--------PNQIELREVTL----TPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGR   69 (308)
T ss_pred             ceEEEEeC--------CCeEEEEEecC----CCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEE
Confidence            56777763        36788888765    788999999999999996 589988877532211112344445599999


Q ss_pred             EEEeccCCCCCCCCCEEEec-----------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhC
Q 042784           92 ARVIRSKDSKYSDGDIVLRA-----------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLG  160 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~-----------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~  160 (356)
                      |+++|+++ .|++||||++.           .|+|+||++++++.++++   |++++.+.  +.+ ..+.|||+++.+ .
T Consensus        70 V~~vG~~v-~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~i---p~~~~~~~--a~~-~~~~~a~~~~~~-~  141 (308)
T TIGR01202        70 VVEAGPDT-GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRL---DPALGPQG--ALL-ALAATARHAVAG-A  141 (308)
T ss_pred             EEEecCCC-CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeC---CCCCCHHH--Hhh-hHHHHHHHHHHh-c
Confidence            99999998 59999999941           599999999999888554   88898753  444 457899999964 3


Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEE
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                       ..++++|+|+|+ |++|++++|+||.+|++ |++++..+++++.+. .+   .++|+.+  .        .++++|+||
T Consensus       142 -~~~~~~vlV~G~-G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~-~~---~~i~~~~--~--------~~~g~Dvvi  205 (308)
T TIGR01202       142 -EVKVLPDLIVGH-GTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT-GY---EVLDPEK--D--------PRRDYRAIY  205 (308)
T ss_pred             -ccCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh-hc---cccChhh--c--------cCCCCCEEE
Confidence             346899999985 99999999999999995 666666667766655 32   3455432  1        235799999


Q ss_pred             ECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcC
Q 042784          240 DNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEG  318 (356)
Q Consensus       240 d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  318 (356)
                      ||+|.. .++.++++++++|+++.+|.....        ...++..++.|++++.++....     .+.++++++++.+|
T Consensus       206 d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~--------~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~l~~~g  272 (308)
T TIGR01202       206 DASGDPSLIDTLVRRLAKGGEIVLAGFYTEP--------VNFDFVPAFMKEARLRIAAEWQ-----PGDLHAVRELIESG  272 (308)
T ss_pred             ECCCCHHHHHHHHHhhhcCcEEEEEeecCCC--------cccccchhhhcceEEEEecccc-----hhHHHHHHHHHHcC
Confidence            999985 689999999999999999975431        1123445667888887654322     35688999999999


Q ss_pred             Ceee--eeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          319 KIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       319 ~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ++.+  .++++|+|+|+++||+.+.++...+|++++
T Consensus       273 ~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       273 ALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             CCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence            9875  588899999999999998877777899874

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1.2e-38  Score=292.41  Aligned_cols=287  Identities=14%  Similarity=0.106  Sum_probs=220.6

Q ss_pred             CCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCc-cCCCccCceeeeeEEEEEeccCCCCCCCCCE
Q 042784           29 SDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLY-FPQFNLNQVILAFGIARVIRSKDSKYSDGDI  107 (356)
Q Consensus        29 ~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~  107 (356)
                      |+.+++++.+.    |. +++||||||.++|||++|++.++|...... ..++|...|+|++|+|+++|.+  .|++|||
T Consensus        11 ~~~~~~~~~~~----P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~~vGdr   83 (341)
T cd08237          11 PKFFEVTYEEE----NL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TYKVGTK   83 (341)
T ss_pred             cceEEEeecCC----CC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--ccCCCCE
Confidence            46899988865    54 899999999999999999999987532211 1234445556999999998765  7999999


Q ss_pred             EEec--------------------------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHh--
Q 042784          108 VLRA--------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVL--  159 (356)
Q Consensus       108 V~~~--------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~--  159 (356)
                      |++.                          .|+|+||+++++++++++   |+++++++  |++..++.++++++...  
T Consensus        84 V~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~v---P~~l~~~~--aa~~~~~~~a~~a~~~~~~  158 (341)
T cd08237          84 VVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKL---PDNVDPEV--AAFTELVSVGVHAISRFEQ  158 (341)
T ss_pred             EEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEEC---CCCCChHH--hhhhchHHHHHHHHHHHhh
Confidence            9841                          288999999999988555   99999987  45777899999998643  


Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHH-CCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceE
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKL-KGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~-~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      ..+++|++|+|+|+ |++|++++|+++. .|. +|++++++++|+++++ ++++...+     .++.+      ..++|+
T Consensus       159 ~~~~~g~~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~-~~~~~~~~-----~~~~~------~~g~d~  225 (341)
T cd08237         159 IAHKDRNVIGVWGD-GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS-FADETYLI-----DDIPE------DLAVDH  225 (341)
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh-hcCceeeh-----hhhhh------ccCCcE
Confidence            34688999999996 9999999999986 665 8999999999999998 66654222     11211      126999


Q ss_pred             EEECCch----hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHH
Q 042784          238 YLDNVGG----KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMES  313 (356)
Q Consensus       238 vld~~g~----~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (356)
                      ||||+|+    ..+..++++++++|+++.+|.....        ...+...++.+++++.++...+     .+.++++++
T Consensus       226 viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~--------~~~~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~  292 (341)
T cd08237         226 AFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYP--------VPINTRMVLEKGLTLVGSSRST-----REDFERAVE  292 (341)
T ss_pred             EEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCC--------cccCHHHHhhCceEEEEecccC-----HHHHHHHHH
Confidence            9999994    3789999999999999999975321        1234455678999998875432     245788999


Q ss_pred             HHHcC-----CeeeeeeEEeChh---hHHHHHHHHHcCCCcceEEEEec
Q 042784          314 YIKEG-----KIRSKHVIYYGVE---SFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       314 ~~~~g-----~i~~~~~~~~~~~---~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      ++.++     .+++.++++|+++   ++.++++.+.++ ..||+||+++
T Consensus       293 ~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~-~~gKvvi~~~  340 (341)
T cd08237         293 LLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTN-SWGKTVMEWE  340 (341)
T ss_pred             HHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhc-CcceEEEEee
Confidence            99988     5778888899974   666666666554 6799999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=4.6e-38  Score=288.13  Aligned_cols=302  Identities=18%  Similarity=0.194  Sum_probs=250.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++.+..       +.+++++++.    |++.++||+||+.++++|+.|...+.|....   .+++...++|++|+|
T Consensus         1 m~a~~~~~~~-------~~~~~~~~~~----p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~---~~~p~~~g~e~~G~v   66 (333)
T cd08296           1 YKAVQVTEPG-------GPLELVERDV----PLPGPGEVLIKVEACGVCHSDAFVKEGAMPG---LSYPRVPGHEVVGRI   66 (333)
T ss_pred             CeEEEEccCC-------CCceEEeccC----CCCCCCEEEEEEEEEecchHHHHHHhCCCCC---CCCCcccCcceeEEE
Confidence            5788887542       4688888755    7789999999999999999999988774322   122334445999999


Q ss_pred             EEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +++|++++++++||+|+..                              .|++++|+.++.+.++..   |+++++++ +
T Consensus        67 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~l---p~~~~~~~-a  142 (333)
T cd08296          67 DAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARI---PDDLDAAE-A  142 (333)
T ss_pred             EEECCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeC---CCCCCHHH-h
Confidence            9999999999999999831                              488999999999877544   99999988 7


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      +.++++++|||+++.. .++.++++|+|+| +|++|++++++|+.+|++|+++++++++.+.++ ++|+++++++.+ .+
T Consensus       143 a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~-~~  218 (333)
T cd08296         143 APLLCAGVTTFNALRN-SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR-KLGAHHYIDTSK-ED  218 (333)
T ss_pred             hhhhhhhHHHHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HcCCcEEecCCC-cc
Confidence            8899999999999965 4899999999999 699999999999999999999999999999997 899998998876 56


Q ss_pred             HHHHHHHHCCCCceEEEECCc-hhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc
Q 042784          223 FDAALTKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM  301 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (356)
                      +.+.+++.  +++|+++|++| ...+..++++++++|+++.+|....        ....+...++.+++++.+.....  
T Consensus       219 ~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--------~~~~~~~~~~~~~~~i~~~~~~~--  286 (333)
T cd08296         219 VAEALQEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGE--------PVAVSPLQLIMGRKSIHGWPSGT--  286 (333)
T ss_pred             HHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCC--------CCCcCHHHHhhcccEEEEeCcCC--
Confidence            77777665  46999999986 5688999999999999999987542        12234456678999999876432  


Q ss_pred             chHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          302 DRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       302 ~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                         ...++.+++++.++.+++.+ ..|+++++.+||+.+.+++..||+|++
T Consensus       287 ---~~~~~~~~~~~~~~~l~~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         287 ---ALDSEDTLKFSALHGVRPMV-ETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             ---HHHHHHHHHHHHhCCCCceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence               24577888899999998775 489999999999999999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=2.9e-38  Score=289.14  Aligned_cols=295  Identities=21%  Similarity=0.179  Sum_probs=234.4

Q ss_pred             EEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCC-ccCceeeeeEEEEEeccCCCCCCCCCEEEec-
Q 042784           34 LRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQF-NLNQVILAFGIARVIRSKDSKYSDGDIVLRA-  111 (356)
Q Consensus        34 ~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~-~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~-  111 (356)
                      +++.+.    |.+.++||+|||.++|||.+|+|.++|..... ..+. .+||  |++|+|+++| .++.+++||||++. 
T Consensus        15 ~~~~~~----p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~-~~~~~i~GH--E~~G~V~evG-~~~~~~~GdrVvv~~   86 (350)
T COG1063          15 LEEPPP----PIPGPGDVLIRVTATGICGSDLHIYRGGEPFV-PPGDIILGH--EFVGEVVEVG-VVRGFKVGDRVVVEP   86 (350)
T ss_pred             cccCCC----CCCCCCeEEEEEEEEeEchhhhhhccCCCCCC-CCCCcccCc--cceEEEEEec-cccCCCCCCEEEECC
Confidence            555533    46889999999999999999999999743222 2222 5555  8999999999 77889999999951 


Q ss_pred             ---------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHH
Q 042784          112 ---------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEV  158 (356)
Q Consensus       112 ---------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~  158 (356)
                                                       .|+|+||+.+|.+.++.++  |++++.+  +++|..++.+++++...
T Consensus        87 ~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~--pd~~~~~--~aal~epla~~~~~~a~  162 (350)
T COG1063          87 NIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKL--PDGIDEE--AAALTEPLATAYHGHAE  162 (350)
T ss_pred             CcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecC--CCCCChh--hhhhcChhhhhhhhhhh
Confidence                                             1789999999987776765  7777554  58999999999877444


Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC-Cce
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN-GID  236 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~-~~d  236 (356)
                      .....++++|+|.|+ |++|++++++++..|+ +|++++.+++|++++++.+|++.+++... .+....+.+++++ ++|
T Consensus       163 ~~~~~~~~~V~V~Ga-GpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~-~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         163 RAAVRPGGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE-DDAGAEILELTGGRGAD  240 (350)
T ss_pred             ccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc-ccHHHHHHHHhCCCCCC
Confidence            555566669999997 9999999999999998 99999999999999993366665555443 3667777788755 999


Q ss_pred             EEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHH
Q 042784          237 VYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYI  315 (356)
Q Consensus       237 ~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (356)
                      ++|||+|.. .+.+++++++++|+++.+|......       ...+...++.|++++.++....    ....++.+++++
T Consensus       241 ~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~-------~~~~~~~~~~kel~l~gs~~~~----~~~~~~~~~~ll  309 (350)
T COG1063         241 VVIEAVGSPPALDQALEALRPGGTVVVVGVYGGED-------IPLPAGLVVSKELTLRGSLRPS----GREDFERALDLL  309 (350)
T ss_pred             EEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCcc-------CccCHHHHHhcccEEEeccCCC----CcccHHHHHHHH
Confidence            999999975 7899999999999999999987621       0345667889999999983311    124578899999


Q ss_pred             HcCCeee--eeeEEeChhhHHHHHHHHHcCCC-cceEEEEe
Q 042784          316 KEGKIRS--KHVIYYGVESFLESLGSLFSSSN-IGKVVIQV  353 (356)
Q Consensus       316 ~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~-~gkvvi~~  353 (356)
                      .+|++.+  .+++.++++++++||+.+.+++. ..|+++.+
T Consensus       310 ~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         310 ASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             HcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            9999876  46778999999999999987554 55888863

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=5.1e-38  Score=291.06  Aligned_cols=307  Identities=18%  Similarity=0.190  Sum_probs=243.0

Q ss_pred             eeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEE
Q 042784           14 KEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIAR   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~   93 (356)
                      |++++.+++       +.+++++.+.    |.|+++||+|||.++++|++|+....|.... ...|..+  |+|++|+|+
T Consensus         2 ka~~~~~~~-------~~l~~~~~~~----p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~--G~e~~G~V~   67 (361)
T cd08231           2 RAAVLTGPG-------KPLEIREVPL----PDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIIL--GHEGVGRVV   67 (361)
T ss_pred             eEEEEcCCC-------CCCEEEeccC----CCCCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCccc--ccCCceEEE
Confidence            567777553       5789998865    7789999999999999999999988875321 1233344  459999999


Q ss_pred             EeccCCCC------CCCCCEEEec------------------------------------cCCeeeEEeecCC-cccccC
Q 042784           94 VIRSKDSK------YSDGDIVLRA------------------------------------FLPVAEYSLLPCD-LLTRKL  130 (356)
Q Consensus        94 ~vg~~v~~------~~~Gd~V~~~------------------------------------~g~~a~~~~v~~~-~~~~~i  130 (356)
                      ++|++++.      +++||+|+..                                    .|+|++|+.++++ .++. +
T Consensus        68 ~vG~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~-l  146 (361)
T cd08231          68 ALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVR-V  146 (361)
T ss_pred             EeCCCccccccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEE-C
Confidence            99999986      9999999832                                    3899999999986 5644 4


Q ss_pred             CCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh
Q 042784          131 DPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEF  209 (356)
Q Consensus       131 ~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~  209 (356)
                        |++++.+. ++++++++.|||+++......++|++|||+| +|++|++++++|+.+|+ +|+++++++++.++++ ++
T Consensus       147 --P~~~~~~~-aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~  221 (361)
T cd08231         147 --PDNVPDEV-AAPANCALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR-EF  221 (361)
T ss_pred             --CCCCCHHH-HHHhcCHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc
Confidence              88899887 6788899999999998777777999999998 49999999999999999 9999999999999998 89


Q ss_pred             CCCceeecCCh--hhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh
Q 042784          210 GYDDAFNYNSE--MSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM  285 (356)
Q Consensus       210 g~~~v~~~~~~--~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  285 (356)
                      |++.++++++.  .++...+.+.++ +++|++|||+|+ ..+..++++++++|+++.+|......      ........+
T Consensus       222 g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~------~~~~~~~~~  295 (361)
T cd08231         222 GADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAG------TVPLDPERI  295 (361)
T ss_pred             CCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCC------ccccCHHHH
Confidence            99888887642  123356777774 589999999986 57889999999999999998754211      011223346


Q ss_pred             hccceEEEEEecccccchHHHHHHHHHHHHHcC----CeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          286 IGKEVKMEGFMIGSHMDRFADFTVEMESYIKEG----KIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g----~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      +.+++++.++...+     ++.++++++++.++    .+.+.++++|+++++++||+.+.++. .+|+||.
T Consensus       296 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~~k~vi~  360 (361)
T cd08231         296 VRKNLTIIGVHNYD-----PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGT-ALKVVID  360 (361)
T ss_pred             hhcccEEEEcccCC-----chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCC-ceEEEeC
Confidence            77888888876543     23456677777766    34567788999999999999998876 4799985

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=3.2e-38  Score=290.26  Aligned_cols=318  Identities=20%  Similarity=0.209  Sum_probs=256.7

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCC-CcEEEEEEEEEeChhhhhhhcCCCCCCcc----CCCccCceee
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPD-HHVAVETLWISIDPYLRATMTGTNDGLYF----PQFNLNQVIL   87 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~-~eVlVkv~~~~i~~~d~~~~~g~~~~~~~----~~~~~g~~~~   87 (356)
                      ||+|++.+.+    ..++.+.+++.+.    |.+.+ ++|+||+.++++|+.|.....|.......    .+..+|  ++
T Consensus         1 ~~a~~~~~~~----~~~~~~~~~~~~~----p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g--~e   70 (341)
T cd08290           1 AKALVYTEHG----EPKEVLQLESYEI----PPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGG--NE   70 (341)
T ss_pred             CceEEEccCC----CchhheEEeecCC----CCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCC--cc
Confidence            6788887653    1124688988865    55666 99999999999999999988764321111    223444  58


Q ss_pred             eeEEEEEeccCCCCCCCCCEEEec---cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCC
Q 042784           88 AFGIARVIRSKDSKYSDGDIVLRA---FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKS  164 (356)
Q Consensus        88 ~~G~v~~vg~~v~~~~~Gd~V~~~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~  164 (356)
                      ++|+|+++|+++..+++||+|+..   .|+|++|+.++.+.++.+   |+++++++ ++++++.++|||+++...+++++
T Consensus        71 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~l---p~~~~~~~-aa~~~~~~~ta~~~l~~~~~~~~  146 (341)
T cd08290          71 GVGEVVKVGSGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKV---PNDVDPEQ-AATLSVNPCTAYRLLEDFVKLQP  146 (341)
T ss_pred             eEEEEEEeCCCCCCCCCCCEEEecCCCCccchheEeccHHHeEeC---CCCCCHHH-HHHhhccHHHHHHHHHhhcccCC
Confidence            999999999999999999999932   289999999999887554   99999998 78999999999999987788999


Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh----HHHHHHHHHhCCCceeecCChh---hHHHHHHHHCCCCceE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD----DNVKLLKEEFGYDDAFNYNSEM---SFDAALTKYFPNGIDV  237 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~----~~~~~~~~~~g~~~v~~~~~~~---~~~~~i~~~~~~~~d~  237 (356)
                      |++|||+|++|++|++++++|+..|++|++++.++    ++.+.++ ++|++++++++. .   ++.+.++++.++++|+
T Consensus       147 g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~~d~  224 (341)
T cd08290         147 GDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLK-ALGADHVLTEEE-LRSLLATELLKSAPGGRPKL  224 (341)
T ss_pred             CCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHH-hcCCCEEEeCcc-cccccHHHHHHHHcCCCceE
Confidence            99999999999999999999999999999888765    6788887 899999998875 3   6777787776558999


Q ss_pred             EEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-----chHHHHHHHHH
Q 042784          238 YLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-----DRFADFTVEME  312 (356)
Q Consensus       238 vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~  312 (356)
                      +|||+|+..+..++++++++|+++.+|.....       ....+....+.+++++.+.....+.     ......+++++
T Consensus       225 vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (341)
T cd08290         225 ALNCVGGKSATELARLLSPGGTMVTYGGMSGQ-------PVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELA  297 (341)
T ss_pred             EEECcCcHhHHHHHHHhCCCCEEEEEeccCCC-------CcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHH
Confidence            99999998888899999999999999864321       0112333457889999888765432     12335688899


Q ss_pred             HHHHcCCeeeeeeEEe---ChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          313 SYIKEGKIRSKHVIYY---GVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       313 ~~~~~g~i~~~~~~~~---~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +++.++.+.+.+..++   +++++.++++.+.+++..||+|+++
T Consensus       298 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         298 ELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             HHHHcCCccCCcccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            9999999988766677   9999999999999999899999863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1.2e-37  Score=291.65  Aligned_cols=317  Identities=15%  Similarity=0.213  Sum_probs=253.0

Q ss_pred             eeeeeeEEEecccCCCCCCC-CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCC---------ccCC
Q 042784           10 TVESKEWYISAYASDGVPTS-DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGL---------YFPQ   79 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~---------~~~~   79 (356)
                      +.+|+++++....   ++.+ +.+++++.++    |.++++||+||+.++++|.+|.+...|.....         ..++
T Consensus        10 ~~~~~a~~~~~~~---~g~~~~~~~~~~~~~----p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~   82 (393)
T cd08246          10 PEKMYAFAIRPER---YGDPAQAIQLEDVPV----PELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPY   82 (393)
T ss_pred             chhhhheeeeccc---CCCcccceEEeecCC----CCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCc
Confidence            4568888876321   2223 4678888865    77899999999999999999998876541110         0111


Q ss_pred             CccCceeeeeEEEEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCccccc
Q 042784           80 FNLNQVILAFGIARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRK  129 (356)
Q Consensus        80 ~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~  129 (356)
                      ..+|  +|++|+|+.+|++++.+++||+|+..                              .|+|++|+.++...++.+
T Consensus        83 ~~~G--~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~i  160 (393)
T cd08246          83 HIGG--SDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPK  160 (393)
T ss_pred             cccc--cceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEEC
Confidence            2445  48999999999999999999999832                              289999999999887554


Q ss_pred             CCCCCCCCccccccccCchhhhHHHHHHHh--CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Q 042784          130 LDPASGIPFPDYLSSLGIPGFAAWVGIEVL--GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE  207 (356)
Q Consensus       130 i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~  207 (356)
                         |+++++++ ++.+++.+.|||+++...  +++++|++|+|+|++|++|++++++|+.+|+++++++.++++.+.++ 
T Consensus       161 ---P~~l~~~~-aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~-  235 (393)
T cd08246         161 ---PKHLSWEE-AAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCR-  235 (393)
T ss_pred             ---CCCCCHHH-HhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-
Confidence               99999998 788999999999998755  67899999999999999999999999999999888998999999998 


Q ss_pred             HhCCCceeecCCh---------------------hhHHHHHHHHCCC--CceEEEECCchhhHHHHHHhcccCCEEEEEe
Q 042784          208 EFGYDDAFNYNSE---------------------MSFDAALTKYFPN--GIDVYLDNVGGKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       208 ~~g~~~v~~~~~~---------------------~~~~~~i~~~~~~--~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ++|+++++++++.                     ..+.+.+.+++++  ++|++|||+|...+..++++++++|+++.+|
T Consensus       236 ~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g  315 (393)
T cd08246         236 ALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVCDRGGMVVICA  315 (393)
T ss_pred             HcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHhccCCEEEEEc
Confidence            7999988886431                     1356677777754  7999999999988999999999999999998


Q ss_pred             cccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcC-
Q 042784          265 MISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSS-  343 (356)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~-  343 (356)
                      ......       ...+...++.++.++.+.....     .+.+.+++++++++.+.+.++++|+++++++|++.+.++ 
T Consensus       316 ~~~~~~-------~~~~~~~l~~~~~~i~g~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~  383 (393)
T cd08246         316 GTTGYN-------HTYDNRYLWMRQKRIQGSHFAN-----DREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRNQ  383 (393)
T ss_pred             ccCCCC-------CCCcHHHHhhheeEEEecccCc-----HHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhCc
Confidence            754311       1123344556777777665443     245788999999999988788899999999999999988 


Q ss_pred             CCcceEEEE
Q 042784          344 SNIGKVVIQ  352 (356)
Q Consensus       344 ~~~gkvvi~  352 (356)
                      +..||+|+-
T Consensus       384 ~~~gkvvv~  392 (393)
T cd08246         384 HHVGNMAVL  392 (393)
T ss_pred             cccceEEEe
Confidence            788999874

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=1.8e-37  Score=287.40  Aligned_cols=310  Identities=19%  Similarity=0.220  Sum_probs=251.6

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +||++++..++       +.+++++.++    |.+.++||+|||.++++|+.|++...|.+.  ...|  ...++|++|+
T Consensus         2 ~~~a~~~~~~~-------~~~~~~~~~~----p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~--~~~p--~v~G~e~~G~   66 (365)
T cd08278           2 KTTAAVVREPG-------GPFVLEDVEL----DDPRPDEVLVRIVATGICHTDLVVRDGGLP--TPLP--AVLGHEGAGV   66 (365)
T ss_pred             ccEEeeeccCC-------CcceEEEeec----CCCCCCeEEEEEEEeecCcccHHHhcCCCC--CCCC--cccccceeEE
Confidence            57888888643       4578888766    778999999999999999999999886432  1223  3444599999


Q ss_pred             EEEeccCCCCCCCCCEEEe---------------------------------------------------ccCCeeeEEe
Q 042784           92 ARVIRSKDSKYSDGDIVLR---------------------------------------------------AFLPVAEYSL  120 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~---------------------------------------------------~~g~~a~~~~  120 (356)
                      |+++|+++..+++||+|++                                                   +.|+|++|+.
T Consensus        67 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~  146 (365)
T cd08278          67 VEAVGSAVTGLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAV  146 (365)
T ss_pred             EEEeCCCcccCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEE
Confidence            9999999999999999983                                                   1378999999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      ++++.++++   |+++++++ ++.++++++||+.++.+.+++++|++|+|+|+ |++|++++++|+..|+ +|++++.++
T Consensus       147 v~~~~~~~i---P~~~s~~~-a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~vG~~~~~la~~~G~~~v~~~~~~~  221 (365)
T cd08278         147 VHERNVVKV---DKDVPLEL-LAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGA-GAVGLAAVMAAKIAGCTTIIAVDIVD  221 (365)
T ss_pred             ecchhEEEC---CCCCCHHH-hhhhcchhhhhhHHHhhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            999888555   99999998 89999999999999988888999999999975 9999999999999999 699998899


Q ss_pred             HHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccc
Q 042784          200 DNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDG  278 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  278 (356)
                      ++.+.++ ++|++.++++.. .++.+.+.+.+++++|+++||+|. ..+..++++++++|+++.+|......      ..
T Consensus       222 ~k~~~~~-~~g~~~~i~~~~-~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~------~~  293 (365)
T cd08278         222 SRLELAK-ELGATHVINPKE-EDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGA------EV  293 (365)
T ss_pred             HHHHHHH-HcCCcEEecCCC-cCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCC------cc
Confidence            9999888 899998898876 567777877776689999999986 57899999999999999998753211      11


Q ss_pred             hhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee-eeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          279 VRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS-KHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~-~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ..+...++.+++++.++.....  ...+.+++++++++++.+.+ .+...|+++++++|++.+.+++. -|+|++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~  365 (365)
T cd08278         294 TLDVNDLLVSGKTIRGVIEGDS--VPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADSESGKV-IKPVLR  365 (365)
T ss_pred             ccCHHHHhhcCceEEEeecCCc--ChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHHHCCCc-eEEEEC
Confidence            2344455578888887765432  12466788999999999854 34458999999999999987765 488774

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=4.4e-37  Score=280.63  Aligned_cols=318  Identities=19%  Similarity=0.207  Sum_probs=256.8

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++.+...     +.++.+++.+.+.    |.+.+++|+||+.++++|+.|++...|..........+...+++++|+|
T Consensus         1 ~~a~~~~~~-----~~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v   71 (324)
T cd08244           1 MRAIRLHEF-----GPPEVLVPEDVPD----PVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVV   71 (324)
T ss_pred             CeEEEEcCC-----CCccceEEeccCC----CCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEE
Confidence            467776543     3446777776644    5688999999999999999999988764322111222333345899999


Q ss_pred             EEeccCCCCCCCCCEEEec----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEE
Q 042784           93 RVIRSKDSKYSDGDIVLRA----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNV  168 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~V  168 (356)
                      +++|++++.+++||+|+..    .|+|++|+.++.+.++++   |+++++++ ++++++.++||| ++...++++++++|
T Consensus        72 ~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~l---p~~~~~~~-a~~~~~~~~ta~-~~~~~~~~~~~~~v  146 (324)
T cd08244          72 DAVGPGVDPAWLGRRVVAHTGRAGGGYAELAVADVDSLHPV---PDGLDLEA-AVAVVHDGRTAL-GLLDLATLTPGDVV  146 (324)
T ss_pred             EEeCCCCCCCCCCCEEEEccCCCCceeeEEEEEchHHeEeC---CCCCCHHH-HhhhcchHHHHH-HHHHhcCCCCCCEE
Confidence            9999999999999999932    589999999999888555   99999998 789999999995 45557889999999


Q ss_pred             EEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhH
Q 042784          169 FVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKML  247 (356)
Q Consensus       169 lV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~  247 (356)
                      +|+|++|++|.+++++|+..|++|+++++++++.+.++ ++|++.++++++ .++.+.+.+.++ +++|+++||+|+...
T Consensus       147 lI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~g~~~~  224 (324)
T cd08244         147 LVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVR-ALGADVAVDYTR-PDWPDQVREALGGGGVTVVLDGVGGAIG  224 (324)
T ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEecCC-ccHHHHHHHHcCCCCceEEEECCChHhH
Confidence            99999999999999999999999999999999999997 899988888876 567777877764 589999999999888


Q ss_pred             HHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-chHHHHHHHHHHHHHcCCeeeeeeE
Q 042784          248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEGKIRSKHVI  326 (356)
Q Consensus       248 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~i~~~~~~  326 (356)
                      ..++++++++|+++.+|......      . ..+....+.+++++.+....... ....+.++++++++.++.+.+.++.
T Consensus       225 ~~~~~~l~~~g~~v~~g~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  297 (324)
T cd08244         225 RAALALLAPGGRFLTYGWASGEW------T-ALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVPVVGQ  297 (324)
T ss_pred             HHHHHHhccCcEEEEEecCCCCC------C-ccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCccce
Confidence            99999999999999998754311      1 12333456788888877654432 2345678889999999999877778


Q ss_pred             EeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          327 YYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       327 ~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      .|+++++++|++.+.+++..||+|+++
T Consensus       298 ~~~~~~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         298 TFPLERAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             EEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence            999999999999999999999999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=2.6e-37  Score=289.61  Aligned_cols=320  Identities=18%  Similarity=0.249  Sum_probs=254.9

Q ss_pred             eeeeeeEEEec--ccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCC------Cc---cC
Q 042784           10 TVESKEWYISA--YASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDG------LY---FP   78 (356)
Q Consensus        10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~------~~---~~   78 (356)
                      +.+||+|.+++  ++    +.++.+++.+.+.    |.++++||+||+.++++|.+|.+...+....      .+   ..
T Consensus         5 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~----p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~   76 (398)
T TIGR01751         5 PETMYAFAIREERDG----DPRQAIQLEVVPV----PELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDL   76 (398)
T ss_pred             chhhhheEEecccCC----CcccceEEeecCC----CCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCC
Confidence            35689999975  43    2336788888755    7789999999999999999988766543210      00   11


Q ss_pred             C-CccCceeeeeEEEEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCccc
Q 042784           79 Q-FNLNQVILAFGIARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLT  127 (356)
Q Consensus        79 ~-~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~  127 (356)
                      + ..+|  +|++|+|+++|++++.+++||+|+..                              .|+|+||+.++.+.++
T Consensus        77 ~~~v~G--~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~  154 (398)
T TIGR01751        77 PFHIIG--SDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLM  154 (398)
T ss_pred             Cceecc--cceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeE
Confidence            2 1344  58999999999999999999999831                              3899999999998875


Q ss_pred             ccCCCCCCCCccccccccCchhhhHHHHHHH--hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Q 042784          128 RKLDPASGIPFPDYLSSLGIPGFAAWVGIEV--LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLL  205 (356)
Q Consensus       128 ~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~  205 (356)
                      .+   |+++++++ ++.+...+.|||+++..  .+++.+|++|+|+|++|++|++++++|+..|++++++++++++.+.+
T Consensus       155 ~v---P~~l~~~~-aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~  230 (398)
T TIGR01751       155 PK---PKHLTWEE-AACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYC  230 (398)
T ss_pred             EC---CCCCCHHH-HhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            55   99999998 78899999999999865  47789999999999999999999999999999988888899999999


Q ss_pred             HHHhCCCceeecCCh---------------------hhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCCEEEEE
Q 042784          206 KEEFGYDDAFNYNSE---------------------MSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       206 ~~~~g~~~v~~~~~~---------------------~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~  263 (356)
                      + ++|++.++|+...                     ..+.+.+.++++ +++|++|||+|...+..++++++++|+++.+
T Consensus       231 ~-~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~  309 (398)
T TIGR01751       231 R-ELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVIC  309 (398)
T ss_pred             H-HcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhhccCCEEEEE
Confidence            8 7999989887531                     124566777774 5899999999988899999999999999999


Q ss_pred             ecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcC
Q 042784          264 GMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSS  343 (356)
Q Consensus       264 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~  343 (356)
                      |......       ...+...++.++.++.+......     ..++++++++.++.+.+.++.++++++++++++.+.++
T Consensus       310 g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~  377 (398)
T TIGR01751       310 GGTTGYN-------HDYDNRYLWMRQKRIQGSHFANL-----REAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRN  377 (398)
T ss_pred             ccccCCC-------CCcCHHHHhhcccEEEccccCcH-----HHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcC
Confidence            8764411       11123334455666665543322     33678899999999998888899999999999999999


Q ss_pred             CCcceEEEEecCC
Q 042784          344 SNIGKVVIQVKAP  356 (356)
Q Consensus       344 ~~~gkvvi~~~~~  356 (356)
                      +..||+|+++..|
T Consensus       378 ~~~gkvvv~~~~~  390 (398)
T TIGR01751       378 HHQGNVAVLVLAP  390 (398)
T ss_pred             CCCceEEEEeCCC
Confidence            9999999998653

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=2e-37  Score=284.90  Aligned_cols=307  Identities=20%  Similarity=0.243  Sum_probs=250.5

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++.+++       +.+++.+.+.    |.+.+++|+||+.++++|++|+....|.+.......++...+++++|+|
T Consensus         1 ~ka~~~~~~~-------~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V   69 (340)
T cd05284           1 MKAARLYEYG-------KPLRLEDVPV----PEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWV   69 (340)
T ss_pred             CeeeEeccCC-------CCceEEeCCC----CCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEE
Confidence            4677777542       4577877754    7789999999999999999999988875532222333445556999999


Q ss_pred             EEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      .++|+++..+++||+|+..                             .|+|++|+.++.+.++.+   |+++++++ ++
T Consensus        70 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~---P~~ls~~~-aa  145 (340)
T cd05284          70 EEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKL---PRGLDPVE-AA  145 (340)
T ss_pred             EEeCCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEEC---CCCCCHHH-hh
Confidence            9999999999999999821                             378999999999888555   99999998 79


Q ss_pred             ccCchhhhHHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          144 SLGIPGFAAWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      +++..+.|||+++... .++.++++|||+|+ |++|++++++|+..| .+|+++++++++.+.++ ++|++++++++. .
T Consensus       146 ~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~-~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~  222 (340)
T cd05284         146 PLADAGLTAYHAVKKALPYLDPGSTVVVIGV-GGLGHIAVQILRALTPATVIAVDRSEEALKLAE-RLGADHVLNASD-D  222 (340)
T ss_pred             hhcchHHHHHHHHHHhcccCCCCCEEEEEcC-cHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH-HhCCcEEEcCCc-c
Confidence            9999999999999866 46889999999995 779999999999999 79999998999999997 899998998876 4


Q ss_pred             hHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccc
Q 042784          222 SFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS  299 (356)
Q Consensus       222 ~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (356)
                       +.+.++++++ .++|+++||+|+ .....++++++++|+++.+|.... .        ..+....+.+++++.+.....
T Consensus       223 -~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-~--------~~~~~~~~~~~~~~~~~~~~~  292 (340)
T cd05284         223 -VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-G--------RLPTSDLVPTEISVIGSLWGT  292 (340)
T ss_pred             -HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-C--------ccCHHHhhhcceEEEEEeccc
Confidence             7788888774 489999999996 688999999999999999986532 0        112223356888888765432


Q ss_pred             ccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          300 HMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                           .+.+++++++++++.+++. ...|+++++++|++.+.+++..||+|+.+
T Consensus       293 -----~~~~~~~~~~l~~g~l~~~-~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         293 -----RAELVEVVALAESGKVKVE-ITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             -----HHHHHHHHHHHHhCCCCcc-eEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence                 3567889999999998864 45799999999999999999899999753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.6e-37  Score=283.67  Aligned_cols=312  Identities=16%  Similarity=0.172  Sum_probs=245.7

Q ss_pred             eeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEE
Q 042784           14 KEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIAR   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~   93 (356)
                      |||.+.+..  ..+.++.+++.+.|.    |.++++||+|||.++++|+.|...+.|... .  .+++...+++++|+|+
T Consensus         1 ~~~~~~~~~--~~~~~~~~~~~~~~~----p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~-~--~~~~~~~g~e~~G~V~   71 (336)
T TIGR02817         1 KAVGYKKPL--PITDPDALVDIDLPK----PKPGGRDLLVEVKAISVNPVDTKVRARMAP-E--AGQPKILGWDAAGVVV   71 (336)
T ss_pred             Cceeecccc--CCCCcccceecccCC----CCCCCCEEEEEEEEEEcChHHHHHHcCCCC-C--CCCCcccceeeEEEEE
Confidence            456666531  114567788887754    789999999999999999999988876421 1  2233344559999999


Q ss_pred             EeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCC----
Q 042784           94 VIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKS----  164 (356)
Q Consensus        94 ~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~----  164 (356)
                      ++|++++.+++||+|+..     .|+|++|+.++++.++.+   |+++++++ +|.++++++|||+++...+++++    
T Consensus        72 ~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~i---p~~~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~~  147 (336)
T TIGR02817        72 AVGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHK---PKSLSFAE-AAALPLTSITAWELLFDRLGINDPVAG  147 (336)
T ss_pred             EeCCCCCCCCCCCEEEEcCCCCCCCcccceEEEcHHHcccC---CCCCCHHH-HhhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence            999999999999999932     489999999999888555   99999998 78999999999999987888877    


Q ss_pred             -CCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          165 -GSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       165 -g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                       |++|||+|++|++|++++|+||.+ |++|++++.++++.+.++ ++|+++++++.  .++.+.+++..++++|+++|++
T Consensus       148 ~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~-~~g~~~~~~~~--~~~~~~i~~~~~~~vd~vl~~~  224 (336)
T TIGR02817       148 DKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVL-ELGAHHVIDHS--KPLKAQLEKLGLEAVSYVFSLT  224 (336)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHH-HcCCCEEEECC--CCHHHHHHHhcCCCCCEEEEcC
Confidence             999999999999999999999998 999999998999999998 89999999876  3677777776566899999998


Q ss_pred             c-hhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecc--ccc---ch--HHHHHHHHHHH
Q 042784          243 G-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIG--SHM---DR--FADFTVEMESY  314 (356)
Q Consensus       243 g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~--~~~~l~~~~~~  314 (356)
                      + ......++++++++|+++.++....           .+...+..+++++......  ...   ..  ....+++++++
T Consensus       225 ~~~~~~~~~~~~l~~~G~~v~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  293 (336)
T TIGR02817       225 HTDQHFKEIVELLAPQGRFALIDDPAE-----------LDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARL  293 (336)
T ss_pred             CcHHHHHHHHHHhccCCEEEEEccccc-----------ccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHH
Confidence            5 4688899999999999998743211           1222334454555543322  111   11  12567889999


Q ss_pred             HHcCCeeeeeeEEeC---hhhHHHHHHHHHcCCCcceEEEE
Q 042784          315 IKEGKIRSKHVIYYG---VESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       315 ~~~g~i~~~~~~~~~---~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      +.++.+++.++..++   ++++++|++.+.+++..||+|++
T Consensus       294 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       294 VDAGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             HHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            999999887666554   79999999999999989999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=9.5e-37  Score=279.50  Aligned_cols=322  Identities=24%  Similarity=0.312  Sum_probs=258.4

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +||++++...+     ....+.+++.+.    |.+.++||+|||.++++|+.|.....|.....  .+.+...+++++|+
T Consensus         1 ~m~a~~~~~~~-----~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~--~~~~~~~g~e~~G~   69 (334)
T PTZ00354          1 MMRAVTLKGFG-----GVDVLKIGESPK----PAPKRNDVLIKVSAAGVNRADTLQRQGKYPPP--PGSSEILGLEVAGY   69 (334)
T ss_pred             CcEEEEEEecC-----CCcceEEEeCCC----CCCCCCEEEEEEEEEecCHHHHHHhCCCCCCC--CCCCcccceeeEEE
Confidence            47888888653     345677777644    57889999999999999999998887643221  12222344589999


Q ss_pred             EEEeccCCCCCCCCCEEEecc---CCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEE
Q 042784           92 ARVIRSKDSKYSDGDIVLRAF---LPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNV  168 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~~---g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~V  168 (356)
                      |+++|+++..+++||+|+ ++   |+|++|+.++.+.++.+   |++++.++ ++.+++++.+||+++...+++++|++|
T Consensus        70 v~~vG~~v~~~~~Gd~V~-~~~~~g~~~~~~~v~~~~~~~i---p~~~~~~~-a~~~~~~~~ta~~~l~~~~~~~~~~~v  144 (334)
T PTZ00354         70 VEDVGSDVKRFKEGDRVM-ALLPGGGYAEYAVAHKGHVMHI---PQGYTFEE-AAAIPEAFLTAWQLLKKHGDVKKGQSV  144 (334)
T ss_pred             EEEeCCCCCCCCCCCEEE-EecCCCceeeEEEecHHHcEeC---CCCCCHHH-HHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            999999999999999999 53   89999999999888555   99999988 788999999999999877899999999


Q ss_pred             EEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCchhhH
Q 042784          169 FVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKML  247 (356)
Q Consensus       169 lV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~~  247 (356)
                      +|+|++|++|++++++|+..|++++++++++++.+.++ ++|++.++++....++.+.+++.+ ++++|++|||+|+..+
T Consensus       145 lI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  223 (334)
T PTZ00354        145 LIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCK-KLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYL  223 (334)
T ss_pred             EEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCchHHH
Confidence            99999999999999999999998888888999999997 899988888865223777888877 4589999999999899


Q ss_pred             HHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-----chHHHHHHHHHHHHHcCCeee
Q 042784          248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-----DRFADFTVEMESYIKEGKIRS  322 (356)
Q Consensus       248 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~g~i~~  322 (356)
                      ..++++++++|+++.+|...+..      ....+...++.+..++.+.......     ....+.++++++++.++.+.+
T Consensus       224 ~~~~~~l~~~g~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  297 (334)
T PTZ00354        224 SETAEVLAVDGKWIVYGFMGGAK------VEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKP  297 (334)
T ss_pred             HHHHHHhccCCeEEEEecCCCCc------ccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccC
Confidence            99999999999999998543211      0102334445666677776544311     122255678889999999988


Q ss_pred             eeeEEeChhhHHHHHHHHHcCCCcceEEEEecCC
Q 042784          323 KHVIYYGVESFLESLGSLFSSSNIGKVVIQVKAP  356 (356)
Q Consensus       323 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~~  356 (356)
                      .+...+++++++++++.+.+++..+|+|+++.+|
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~~~  331 (334)
T PTZ00354        298 IVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNEP  331 (334)
T ss_pred             ccccEEcHHHHHHHHHHHHhCCCCceEEEecCCC
Confidence            7777899999999999999888889999988764

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=1.3e-36  Score=278.14  Aligned_cols=324  Identities=27%  Similarity=0.447  Sum_probs=257.6

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      .||+|.+..+.   ...++.+++++.+.    |.+.++||+|||.++++|+.|++...|.......+|..+|  ++++|+
T Consensus         1 ~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g--~e~~G~   71 (329)
T cd08250           1 SFRKLVVHRLS---PNFREATSIVDVPV----PLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCG--FEGVGE   71 (329)
T ss_pred             CceEEEeccCC---CCcccCceEEecCC----CCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccC--ceeEEE
Confidence            37899998754   33467889988755    6789999999999999999999988765432223334445  489999


Q ss_pred             EEEeccCCCCCCCCCEEEec-cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784           92 ARVIRSKDSKYSDGDIVLRA-FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~-~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      |+.+|+++..+++||+|+.. .|+|++|+.++.+.++.+   |++  +.+ ++++++++.|||+++...+++.+|++|+|
T Consensus        72 v~~vG~~v~~~~~Gd~V~~~~~g~~~s~~~v~~~~~~~i---p~~--~~~-~a~l~~~~~ta~~~l~~~~~~~~~~~vlI  145 (329)
T cd08250          72 VVAVGEGVTDFKVGDAVATMSFGAFAEYQVVPARHAVPV---PEL--KPE-VLPLLVSGLTASIALEEVGEMKSGETVLV  145 (329)
T ss_pred             EEEECCCCCCCCCCCEEEEecCcceeEEEEechHHeEEC---CCC--cch-hhhcccHHHHHHHHHHHhcCCCCCCEEEE
Confidence            99999999999999999932 489999999999887554   776  345 68899999999999987888999999999


Q ss_pred             EcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHH
Q 042784          171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAV  250 (356)
Q Consensus       171 ~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~  250 (356)
                      +|++|++|.+++++|+..|++|+++++++++.+.++ ++|++.++++.+ .++.+.+.+..++++|++|||+|+..+..+
T Consensus       146 ~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~-~~~~~~~~~~~~~~vd~v~~~~g~~~~~~~  223 (329)
T cd08250         146 TAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLK-SLGCDRPINYKT-EDLGEVLKKEYPKGVDVVYESVGGEMFDTC  223 (329)
T ss_pred             EeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH-HcCCceEEeCCC-ccHHHHHHHhcCCCCeEEEECCcHHHHHHH
Confidence            999999999999999999999999998999999997 899988888765 566666766666689999999999889999


Q ss_pred             HHhcccCCEEEEEecccccccc-cccc-cchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeee--eE
Q 042784          251 LNHVNVHARIILCGMISQYNKV-WTER-DGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKH--VI  326 (356)
Q Consensus       251 ~~~l~~~G~~v~~g~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~--~~  326 (356)
                      +++++++|+++.+|........ ...+ .........+.+++++.+.....+.....+.+.++++++.++.+.+.+  ..
T Consensus       224 ~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  303 (329)
T cd08250         224 VDNLALKGRLIVIGFISGYQSGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTR  303 (329)
T ss_pred             HHHhccCCeEEEEecccCCcccCcccccccccccHHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCcc
Confidence            9999999999999875431100 0000 000112244678888888876544333557788899999999998743  34


Q ss_pred             EeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          327 YYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       327 ~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      .++++++++|++.+.++...+|+|++
T Consensus       304 ~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         304 FRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             ccCHHHHHHHHHHHHcCCCCceEEeC
Confidence            69999999999999988888899874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=100.00  E-value=8.4e-37  Score=279.40  Aligned_cols=323  Identities=37%  Similarity=0.648  Sum_probs=256.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCC--ccCceeeeeE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQF--NLNQVILAFG   90 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~--~~g~~~~~~G   90 (356)
                      +++|.+.+. +.++++++.+++++.+.    |++.+++|+||+.++++|+.|+....+..  ....+.  ....+++++|
T Consensus         2 ~~~~~~~~~-~~~~~~~~~~~~~~~~~----p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~g~e~~G   74 (329)
T cd05288           2 NRQVVLAKR-PEGPPPPDDFELVEVPL----PELKDGEVLVRTLYLSVDPYMRGWMSDAK--SYSPPVQLGEPMRGGGVG   74 (329)
T ss_pred             CcEEEEecc-CCCCCCccceeEEeccC----CCCCCCeEEEEEEEEecCHHHhhhhccCc--ccCCCccCCCcccCceEE
Confidence            678988765 44457889999998865    77899999999999999998876554321  111111  1223458899


Q ss_pred             EEEEeccCCCCCCCCCEEEeccCCeeeEEeecC-CcccccCCCCCCCC--ccccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           91 IARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPC-DLLTRKLDPASGIP--FPDYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~-~~~~~~i~~P~~~s--~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      +|+++|++  ++++||+|+ ++++|++|+.++. +.++.+   |++++  +...++++++++.|||+++...+++.++++
T Consensus        75 ~V~~~G~~--~~~~Gd~V~-~~~~~~~~~~v~~~~~~~~l---P~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~  148 (329)
T cd05288          75 EVVESRSP--DFKVGDLVS-GFLGWQEYAVVDGASGLRKL---DPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGET  148 (329)
T ss_pred             EEEecCCC--CCCCCCEEe-cccceEEEEEecchhhcEEC---CcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCE
Confidence            99999965  799999999 8899999999999 887554   88885  444233499999999999987788999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhH
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKML  247 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~  247 (356)
                      |+|+|++|++|++++++|+..|++|+++++++++.+.+++.+|+++++++++ .++.+.+.+.+++++|++|||+|+..+
T Consensus       149 vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~~~~~d~vi~~~g~~~~  227 (329)
T cd05288         149 VVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKT-PDLAEALKEAAPDGIDVYFDNVGGEIL  227 (329)
T ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCC-hhHHHHHHHhccCCceEEEEcchHHHH
Confidence            9999999999999999999999999999989999999983399988998876 567777887776789999999999999


Q ss_pred             HHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEE
Q 042784          248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIY  327 (356)
Q Consensus       248 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~  327 (356)
                      ..++++++++|+++.+|........  ......+....+.+++++.+...........+.+.++++++.++.+.+.....
T Consensus       228 ~~~~~~l~~~G~~v~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  305 (329)
T cd05288         228 DAALTLLNKGGRIALCGAISQYNAT--EPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDVV  305 (329)
T ss_pred             HHHHHhcCCCceEEEEeeccCcccc--cccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCcccccccc
Confidence            9999999999999999875432100  00001123445678888888766544334456788899999999998776667


Q ss_pred             eChhhHHHHHHHHHcCCCcceEEE
Q 042784          328 YGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       328 ~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      ++++++.++++.+.+++..||+|+
T Consensus       306 ~~l~~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         306 EGLENAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             ccHHHHHHHHHHHhcCCCccceeC
Confidence            999999999999998888888874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.2e-36  Score=280.78  Aligned_cols=309  Identities=19%  Similarity=0.208  Sum_probs=244.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCC------------------
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDG------------------   74 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~------------------   74 (356)
                      ||++.+.+.     +.++.+.+.+. +  |.|.+.+++|+|||.++++|++|++.+.|.+..                  
T Consensus         1 ~~a~~~~~~-----~~~~~~~~~~~-~--~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~   72 (350)
T cd08274           1 MRAVLLTGH-----GGLDKLVYRDD-V--PVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWG   72 (350)
T ss_pred             CeEEEEecc-----CCccceeeccc-C--CCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCcccccccccccccccccc
Confidence            467766543     23456666542 1  226689999999999999999999988764321                  


Q ss_pred             -CccCCCccCceeeeeEEEEEeccCCCCCCCCCEEEec---------------------cCCeeeEEeecCCcccccCCC
Q 042784           75 -LYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRA---------------------FLPVAEYSLLPCDLLTRKLDP  132 (356)
Q Consensus        75 -~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~---------------------~g~~a~~~~v~~~~~~~~i~~  132 (356)
                       ....|..+|  +|++|+|+.+|++++++++||+|+..                     .|++++|+.++.+.++++   
T Consensus        73 ~~~~~p~~~G--~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i---  147 (350)
T cd08274          73 GTLSFPRIQG--ADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPV---  147 (350)
T ss_pred             CCCCCCcccC--CcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeC---
Confidence             112233445  48999999999999999999999831                     289999999999887554   


Q ss_pred             CCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Q 042784          133 ASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       133 P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      |+++++++ ++++++++.|||+++ ..+++++|++|||+|++|++|++++++|+.+|++|++++.++ +.+.++ ++|++
T Consensus       148 p~~~~~~~-~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~-~~g~~  223 (350)
T cd08274         148 NSPLSDVE-LATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR-ALGAD  223 (350)
T ss_pred             CCCCCHHH-HHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH-hcCCe
Confidence            99999988 789999999999998 578899999999999999999999999999999999888655 888887 89987


Q ss_pred             ceeecCChhhHHHHHHHHC-CCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceE
Q 042784          213 DAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVK  291 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (356)
                      .+.+... ..+.+  .+.+ ++++|++|||+|+..+..++++++++|+++.+|.....       ....+...++.++++
T Consensus       224 ~~~~~~~-~~~~~--~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-------~~~~~~~~~~~~~~~  293 (350)
T cd08274         224 TVILRDA-PLLAD--AKALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGP-------VVELDLRTLYLKDLT  293 (350)
T ss_pred             EEEeCCC-ccHHH--HHhhCCCCCcEEEecCCHHHHHHHHHHhccCCEEEEecccCCc-------cccCCHHHhhhcceE
Confidence            5554432 33333  3444 46899999999999999999999999999999865321       012244555778888


Q ss_pred             EEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          292 MEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +.+.....     .+.++++++++.++.+.+.+..+|+++++.+|++.+.++...+|+|+++
T Consensus       294 ~~~~~~~~-----~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         294 LFGSTLGT-----REVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             EEEeecCC-----HHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            88776532     3568889999999999887778999999999999999888889999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=2.8e-36  Score=275.42  Aligned_cols=313  Identities=21%  Similarity=0.301  Sum_probs=245.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..++     +++.+++++.++    |.+.++||+||+.++++|+.|+....|.....  .+++...++|++|+|
T Consensus         1 ~~a~~~~~~~-----~~~~~~~~~~~~----p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~v   69 (325)
T cd05280           1 FKALVVEEQD-----GGVSLFLRTLPL----DDLPEGDVLIRVHYSSLNYKDALAATGNGGVT--RNYPHTPGIDAAGTV   69 (325)
T ss_pred             CceEEEcccC-----CCCcceEEeCCC----CCCCCCeEEEEEEEeecChHHHHHhcCCCCCC--CCCCCccCcccEEEE
Confidence            5778887653     335899988866    77899999999999999999999888753221  222333445899999


Q ss_pred             EEeccCCCCCCCCCEEEec--------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCC--
Q 042784           93 RVIRSKDSKYSDGDIVLRA--------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQP--  162 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~--  162 (356)
                      +++  +++.+++||+|+..        .|+|++|+.++.+.++.+   |+++++++ ++.+++.+.+||+++....+.  
T Consensus        70 ~~~--~~~~~~~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~l---p~~~~~~~-aa~~~~~~~ta~~~l~~~~~~~~  143 (325)
T cd05280          70 VSS--DDPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPL---PEGLSLRE-AMILGTAGFTAALSVHRLEDNGQ  143 (325)
T ss_pred             EEe--CCCCCCCCCEEEEcccccCCCCCceeEEEEEEchhhEEEC---CCCCCHHH-HHhhHHHHHHHHHHHHHHhhccC
Confidence            998  45689999999932        589999999999887555   99999999 789999999999998755433  


Q ss_pred             C-CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          163 K-SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       163 ~-~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      . .+++|+|+|++|++|++++++|+..|++|+++++++++.+.++ ++|++.++++.+ . ..+..+...++++|++|||
T Consensus       144 ~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~-~~~~~~~~~~~~~d~vi~~  220 (325)
T cd05280         144 TPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLK-SLGASEVLDRED-L-LDESKKPLLKARWAGAIDT  220 (325)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEEcchh-H-HHHHHHHhcCCCccEEEEC
Confidence            5 3579999999999999999999999999999999999999998 899988887653 1 2222333445679999999


Q ss_pred             CchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-chHHHHHHHHHHHHHcCCe
Q 042784          242 VGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       242 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~i  320 (356)
                      +|+..+..++++++++|+++.+|......       .......++.+++++.+....... ....+.++.+.+++..+ +
T Consensus       221 ~~~~~~~~~~~~l~~~g~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  292 (325)
T cd05280         221 VGGDVLANLLKQTKYGGVVASCGNAAGPE-------LTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPD-L  292 (325)
T ss_pred             CchHHHHHHHHhhcCCCEEEEEecCCCCc-------cccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcC-C
Confidence            99999999999999999999998754311       112333445788888887654332 23345667777777777 4


Q ss_pred             eeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          321 RSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       321 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      .+.+..+|++++++++++.+.+++..||+|+++
T Consensus       293 ~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         293 LEIVVREISLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             ccceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence            445777999999999999999999999999864

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.8e-36  Score=281.22  Aligned_cols=308  Identities=19%  Similarity=0.240  Sum_probs=252.0

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++....       ..+++++.++    |.++++||+||+.++++|+.|+....|....  ..|..+  +++++|+|
T Consensus         1 ~~a~~~~~~~-------~~~~~~~~~~----~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~--g~e~~G~v   65 (367)
T cd08263           1 MKAAVLKGPN-------PPLTIEEIPV----PRPKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVL--GHEISGEV   65 (367)
T ss_pred             CeeEEEecCC-------CCcEEEEeeC----CCCCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCccc--ccccceEE
Confidence            5788888652       4578887765    6789999999999999999999988764422  223344  45899999


Q ss_pred             EEeccCCCC---CCCCCEEEe---------------------------------------------------ccCCeeeE
Q 042784           93 RVIRSKDSK---YSDGDIVLR---------------------------------------------------AFLPVAEY  118 (356)
Q Consensus        93 ~~vg~~v~~---~~~Gd~V~~---------------------------------------------------~~g~~a~~  118 (356)
                      +.+|+++.+   +++||+|+.                                                   ..|+|++|
T Consensus        66 ~~vG~~~~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  145 (367)
T cd08263          66 VEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEY  145 (367)
T ss_pred             EEeCCCCCCCCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeE
Confidence            999999988   999999983                                                   13889999


Q ss_pred             EeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeC
Q 042784          119 SLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTG  197 (356)
Q Consensus       119 ~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~  197 (356)
                      +.++.+.++.+   |+++++.+ +++++.+++|||+++.+.+.+.++++|+|+| +|++|.+++++|+..|++ |++++.
T Consensus       146 ~~~~~~~~~~~---P~~is~~~-aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~vi~~~~  220 (367)
T cd08263         146 AVVPATALAPL---PESLDYTE-SAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPIIAVDV  220 (367)
T ss_pred             EEechhhEEEC---CCCCCHHH-HhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeC
Confidence            99999888555   99999998 7999999999999998888889999999996 699999999999999996 999988


Q ss_pred             ChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCchh-hHHHHHHhcccCCEEEEEeccccccccccc
Q 042784          198 SDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTE  275 (356)
Q Consensus       198 s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  275 (356)
                      ++++.+.++ ++|++.+++++. .++.+.+++.. +.++|++||++|+. ....++++++++|+++.+|......     
T Consensus       221 s~~~~~~~~-~~g~~~v~~~~~-~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~-----  293 (367)
T cd08263         221 RDEKLAKAK-ELGATHTVNAAK-EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGA-----  293 (367)
T ss_pred             CHHHHHHHH-HhCCceEecCCc-ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCC-----
Confidence            999999997 899998998876 67777888776 45899999999987 8899999999999999998643211     


Q ss_pred             ccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeee--eeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          276 RDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSK--HVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                       ....+...++.+++++.+.....    ..+.++++++++.++.+.+.  +++.++++++.++++.+++++..||+|++
T Consensus       294 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         294 -TAEIPITRLVRRGIKIIGSYGAR----PRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             -ccccCHHHHhhCCeEEEecCCCC----cHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence             11123344556788877643221    14578889999999998864  56789999999999999999888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.9e-36  Score=279.54  Aligned_cols=310  Identities=19%  Similarity=0.171  Sum_probs=241.4

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..+        +.+++++.+.    |.+.++||+|||.++++|++|++...|.... ...|..+|  ++++|+|
T Consensus         1 mka~~~~~~--------~~~~l~~~~~----p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G--~e~~G~V   65 (351)
T cd08285           1 MKAFAMLGI--------GKVGWIEKPI----PVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILG--HEAVGVV   65 (351)
T ss_pred             CceEEEccC--------CccEEEECCC----CCCCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccC--cceEEEE
Confidence            567777753        3467877755    6789999999999999999999888764322 12234444  5999999


Q ss_pred             EEeccCCCCCCCCCEEEe--------------------------------ccCCeeeEEeecCC--cccccCCCCCCCCc
Q 042784           93 RVIRSKDSKYSDGDIVLR--------------------------------AFLPVAEYSLLPCD--LLTRKLDPASGIPF  138 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~--------------------------------~~g~~a~~~~v~~~--~~~~~i~~P~~~s~  138 (356)
                      +++|++++++++||+|+.                                ..|+|+||+.++.+  .++. +  |+++++
T Consensus        66 ~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~-l--P~~~~~  142 (351)
T cd08285          66 EEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAP-L--PDGLTD  142 (351)
T ss_pred             EEecCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEE-C--CCCCCH
Confidence            999999999999999993                                14889999999974  5534 4  999999


Q ss_pred             cccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeec
Q 042784          139 PDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNY  217 (356)
Q Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~  217 (356)
                      ++ ++.++..+.|||+++ ..+++++|++|||+| +|++|++++|+|+..|+ .|+++++++++.++++ ++|++.++++
T Consensus       143 ~~-aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~  218 (351)
T cd08285         143 EQ-AVMLPDMMSTGFHGA-ELANIKLGDTVAVFG-IGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK-EYGATDIVDY  218 (351)
T ss_pred             HH-hhhhccchhhHHHHH-HccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HcCCceEecC
Confidence            98 788889999999997 578899999999997 59999999999999999 6899988888999998 8999999988


Q ss_pred             CChhhHHHHHHHHC-CCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEE
Q 042784          218 NSEMSFDAALTKYF-PNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGF  295 (356)
Q Consensus       218 ~~~~~~~~~i~~~~-~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      .. .++.+.+.+++ +.++|++|||+|+ ..+..++++++++|+++.+|......   ... .....+....+...+.+.
T Consensus       219 ~~-~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~---~~~-~~~~~~~~~~~~~~i~~~  293 (351)
T cd08285         219 KN-GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDD---YLP-IPREEWGVGMGHKTINGG  293 (351)
T ss_pred             CC-CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCc---eee-cChhhhhhhccccEEEEe
Confidence            76 67777788776 4589999999997 58899999999999999998754311   000 000111122334444433


Q ss_pred             ecccccchHHHHHHHHHHHHHcCCeee---eeeEEeChhhHHHHHHHHHcCC-CcceEEEEe
Q 042784          296 MIGSHMDRFADFTVEMESYIKEGKIRS---KHVIYYGVESFLESLGSLFSSS-NIGKVVIQV  353 (356)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~g~i~~---~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~~  353 (356)
                      ....    .++.++++++++.+|++++   .++.+|+++++++|++.+.+++ ...|+++++
T Consensus       294 ~~~~----~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         294 LCPG----GRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             ecCC----ccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            2111    2356788999999999987   3445699999999999999887 467999874

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=2.2e-36  Score=279.00  Aligned_cols=309  Identities=17%  Similarity=0.171  Sum_probs=248.5

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCC---------CccCCCccC
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDG---------LYFPQFNLN   83 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~---------~~~~~~~~g   83 (356)
                      ||+|+.....       ..+++++.++    |++.++||+||+.++++|++|++...|....         ....+++..
T Consensus         1 ~~a~~~~~~~-------~~~~~~~~~~----p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~   69 (350)
T cd08240           1 MKAAAVVEPG-------KPLEEVEIDT----PKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLV   69 (350)
T ss_pred             CeeEEeccCC-------CCceEEecCC----CCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcc
Confidence            5677776542       4478887755    7789999999999999999999988764210         001112233


Q ss_pred             ceeeeeEEEEEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCC
Q 042784           84 QVILAFGIARVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPAS  134 (356)
Q Consensus        84 ~~~~~~G~v~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~  134 (356)
                      .+++++|+|+++|++++.+++||+|+.                             ..|++++|+.++.+.++.+   |+
T Consensus        70 ~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---p~  146 (350)
T cd08240          70 LGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVD---PG  146 (350)
T ss_pred             cccceeEEEEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeC---CC
Confidence            445899999999999999999999983                             2488999999999887555   99


Q ss_pred             CCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCc
Q 042784          135 GIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDD  213 (356)
Q Consensus       135 ~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~  213 (356)
                      ++++++ ++++.+.++|||+++.....+.++++|+|+| +|++|++++|+|+..|+ +|++++.++++.+.++ ++|++.
T Consensus       147 ~~s~~~-aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~  223 (350)
T cd08240         147 GLDPAL-AATLACSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANIIVVDIDEAKLEAAK-AAGADV  223 (350)
T ss_pred             CCCHHH-eehhhchhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCcE
Confidence            999998 7899999999999998777777899999997 59999999999999999 8999998999999997 899988


Q ss_pred             eeecCChhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          214 AFNYNSEMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       214 v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      ++++++ .++.+.+.+..++++|++||++|. ..+..++++|+++|+++.+|......        .........+++++
T Consensus       224 ~~~~~~-~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~--------~~~~~~~~~~~~~i  294 (350)
T cd08240         224 VVNGSD-PDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEA--------TLPLPLLPLRALTI  294 (350)
T ss_pred             EecCCC-ccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCC--------cccHHHHhhcCcEE
Confidence            888765 566677777665589999999985 68899999999999999998754311        11122233477777


Q ss_pred             EEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      .+.....     .+.+.+++++++++.+++.+...|+++++++|++.+.+++..||++++
T Consensus       295 ~~~~~~~-----~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  349 (350)
T cd08240         295 QGSYVGS-----LEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLK  349 (350)
T ss_pred             EEcccCC-----HHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence            7765443     256788999999999987777789999999999999999989999985

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=2.9e-36  Score=275.69  Aligned_cols=315  Identities=20%  Similarity=0.184  Sum_probs=250.7

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|.+..+     +.++.+++++.+.    |.++++||+||+.++++|++|.+...|.+..   ..++...+++++|+|
T Consensus         2 ~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~---~~~~~~~g~e~~G~v   69 (327)
T PRK10754          2 AKRIEFHKH-----GGPEVLQAVEFTP----ADPAENEVQVENKAIGINYIDTYIRSGLYPP---PSLPSGLGTEAAGVV   69 (327)
T ss_pred             ceEEEEecc-----CChhHeEEeeccC----CCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC---CCCCCccCcceEEEE
Confidence            778888754     5678899998865    7789999999999999999999988764321   223334455899999


Q ss_pred             EEeccCCCCCCCCCEEEec---cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEE
Q 042784           93 RVIRSKDSKYSDGDIVLRA---FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVF  169 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  169 (356)
                      +.+|++++.+++||+|++.   .|+|++|+.++.+.++.+   |+++++++ ++.++..+++||.++...+++.+|++|+
T Consensus        70 ~~vG~~v~~~~~Gd~V~~~~~~~g~~~~~v~v~~~~~~~l---p~~~~~~~-~~~~~~~~~ta~~~l~~~~~~~~g~~vl  145 (327)
T PRK10754         70 SKVGSGVKHIKVGDRVVYAQSALGAYSSVHNVPADKAAIL---PDAISFEQ-AAASFLKGLTVYYLLRKTYEIKPDEQFL  145 (327)
T ss_pred             EEeCCCCCCCCCCCEEEECCCCCcceeeEEEcCHHHceeC---CCCCCHHH-HHHHHHHHHHHHHHHHhhcCCCCCCEEE
Confidence            9999999999999999832   389999999999887554   99999988 7888899999999998788899999999


Q ss_pred             EEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHH
Q 042784          170 VSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLE  248 (356)
Q Consensus       170 V~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~  248 (356)
                      |+|++|.+|++++++|+..|++|++++.++++.+.++ ++|++++++++. .++.+.+++.++ +++|++|||+|+..+.
T Consensus       146 I~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~~~~~~~  223 (327)
T PRK10754        146 FHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAK-KAGAWQVINYRE-ENIVERVKEITGGKKVRVVYDSVGKDTWE  223 (327)
T ss_pred             EEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HCCCCEEEcCCC-CcHHHHHHHHcCCCCeEEEEECCcHHHHH
Confidence            9999999999999999999999999999999999997 899988888776 678888888774 5899999999998889


Q ss_pred             HHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceE-EEEEec---ccccchHHHHHHHHHHHHHcCCeeee-
Q 042784          249 AVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVK-MEGFMI---GSHMDRFADFTVEMESYIKEGKIRSK-  323 (356)
Q Consensus       249 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~l~~~~~~~~~g~i~~~-  323 (356)
                      ..+++++++|+++.+|......     .  ......+..++.. ......   ........+.++++++++.+|.+++. 
T Consensus       224 ~~~~~l~~~g~~v~~g~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~  296 (327)
T PRK10754        224 ASLDCLQRRGLMVSFGNASGPV-----T--GVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDV  296 (327)
T ss_pred             HHHHHhccCCEEEEEccCCCCC-----C--CcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeec
Confidence            9999999999999998754210     0  0111111122211 111111   11112233556778999999999864 


Q ss_pred             -eeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          324 -HVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       324 -~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                       +.+.|+++++.++++.+.++...+|+|++
T Consensus       297 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (327)
T PRK10754        297 AEQQKFPLKDAQRAHEILESRATQGSSLLI  326 (327)
T ss_pred             ccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence             45789999999999999999999999986

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=3.7e-36  Score=276.55  Aligned_cols=309  Identities=17%  Similarity=0.180  Sum_probs=253.4

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++++++      +..+++++.++    |.+.++||+||+.++++|+.|.....|........+..+|  ++++|+|
T Consensus         1 m~a~~~~~~~------~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g--~e~~G~V   68 (341)
T cd08297           1 MKAAVVEEFG------EKPYEVKDVPV----PEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGG--HEGAGVV   68 (341)
T ss_pred             CceEEeeccC------CCCceEEEeeC----CCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCC--cccceEE
Confidence            5788887542      46888988866    6789999999999999999999888764422111233344  4899999


Q ss_pred             EEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +.+|++++.+++||+|+..                              .|++++|+.++.+.++.+   |++++.++ +
T Consensus        69 ~~vG~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~l---p~~~~~~~-~  144 (341)
T cd08297          69 VAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPI---PDGLSFEQ-A  144 (341)
T ss_pred             EEeCCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEEC---CCCCCHHH-H
Confidence            9999999999999999831                              588999999999888554   99999998 7


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      ++++..++|||+++.. .+++++++|||+|+++++|++++++|+++|++|++++.++++.+.++ ++|++.++++.+ .+
T Consensus       145 a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~-~~  221 (341)
T cd08297         145 APLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAK-ELGADAFVDFKK-SD  221 (341)
T ss_pred             HHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HcCCcEEEcCCC-cc
Confidence            8899999999999975 58999999999999888999999999999999999999999999997 899998998876 57


Q ss_pred             HHHHHHHHC-CCCceEEEECCc-hhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc
Q 042784          223 FDAALTKYF-PNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH  300 (356)
Q Consensus       223 ~~~~i~~~~-~~~~d~vld~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (356)
                      +.+.+.+.+ ++++|++||+.+ ...+..++++++++|+++.+|.....       ....+...+..+++++.+..... 
T Consensus       222 ~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-  293 (341)
T cd08297         222 DVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGG-------FIPLDPFDLVLRGITIVGSLVGT-  293 (341)
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCC-------CCCCCHHHHHhcccEEEEeccCC-
Confidence            888888877 468999999666 46888999999999999999865421       11123345567888887754332 


Q ss_pred             cchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          301 MDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       301 ~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                          .+.++++++++.++.+.+.+ ..|++++++++++.+.++...||+|+++
T Consensus       294 ----~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         294 ----RQDLQEALEFAARGKVKPHI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             ----HHHHHHHHHHHHcCCCccee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence                36788899999999998755 5799999999999999999999999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.1e-36  Score=272.71  Aligned_cols=301  Identities=21%  Similarity=0.230  Sum_probs=244.4

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++.+.     + |..+++++.+.    |.++++||+||+.++++|+.|.+...+.     ..+..+|  ++++|+|
T Consensus         1 ~~~~~~~~~-----~-~~~~~~~~~~~----p~~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g--~e~~G~v   63 (305)
T cd08270           1 MRALVVDPD-----A-PLRLRLGEVPD----PQPAPHEALVRVAAISLNRGELKFAAER-----PDGAVPG--WDAAGVV   63 (305)
T ss_pred             CeEEEEccC-----C-CceeEEEecCC----CCCCCCEEEEEEEEEecCHHHHHhhccC-----CCCCccc--ceeEEEE
Confidence            467777643     2 56788888755    6789999999999999999999876521     2233444  4899999


Q ss_pred             EEeccCCCCCCCCCEEEec--cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784           93 RVIRSKDSKYSDGDIVLRA--FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      +++|+++..+++||+|+..  .|+|++|+.++.++++.+   |+++++++ ++++++.+.|||+++...... +|++|+|
T Consensus        64 ~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~v~~~~~~~i---p~~~~~~~-a~~~~~~~~ta~~~~~~~~~~-~~~~vli  138 (305)
T cd08270          64 ERAAADGSGPAVGARVVGLGAMGAWAELVAVPTGWLAVL---PDGVSFAQ-AATLPVAGVTALRALRRGGPL-LGRRVLV  138 (305)
T ss_pred             EEeCCCCCCCCCCCEEEEecCCcceeeEEEEchHHeEEC---CCCCCHHH-HHHhHhHHHHHHHHHHHhCCC-CCCEEEE
Confidence            9999999999999999932  489999999999888555   99999998 799999999999999876655 5999999


Q ss_pred             EcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHH
Q 042784          171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAV  250 (356)
Q Consensus       171 ~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~  250 (356)
                      +|++|++|.+++++++..|++|+++++++++.+.++ ++|++..++..  .       ++.++++|+++||+|+..+..+
T Consensus       139 ~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~--~-------~~~~~~~d~vl~~~g~~~~~~~  208 (305)
T cd08270         139 TGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLR-ELGAAEVVVGG--S-------ELSGAPVDLVVDSVGGPQLARA  208 (305)
T ss_pred             ECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecc--c-------cccCCCceEEEECCCcHHHHHH
Confidence            999999999999999999999999999999999999 79987555432  1       1233579999999999889999


Q ss_pred             HHhcccCCEEEEEecccccccccccccchhhhhhhhc--cceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEe
Q 042784          251 LNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIG--KEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYY  328 (356)
Q Consensus       251 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~  328 (356)
                      +++++++|+++.+|.....       ....+...+..  ++.++.++.... .....+.++.+++++.++++.+.+..++
T Consensus       209 ~~~l~~~G~~v~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~  280 (305)
T cd08270         209 LELLAPGGTVVSVGSSSGE-------PAVFNPAAFVGGGGGRRLYTFFLYD-GEPLAADLARLLGLVAAGRLDPRIGWRG  280 (305)
T ss_pred             HHHhcCCCEEEEEeccCCC-------cccccHHHHhcccccceEEEEEccC-HHHHHHHHHHHHHHHHCCCccceeccEE
Confidence            9999999999999875421       11123333333  588888877654 2334567889999999999998777899


Q ss_pred             ChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          329 GVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       329 ~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +++++++|++.+.+++..||+|+++
T Consensus       281 ~~~~~~~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         281 SWTEIDEAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             cHHHHHHHHHHHHcCCCCceEEEeC
Confidence            9999999999999999899999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=3.1e-36  Score=274.92  Aligned_cols=304  Identities=21%  Similarity=0.216  Sum_probs=251.3

Q ss_pred             CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEE
Q 042784           30 DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVL  109 (356)
Q Consensus        30 ~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~  109 (356)
                      +.+++++.+.    |.+.+++|+|||.++++|+.|.....|........+..+|  ++++|+|+.+|++++.+++||+|+
T Consensus        12 ~~~~~~~~~~----~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g--~e~~G~v~~~G~~v~~~~~Gd~V~   85 (323)
T cd05282          12 LVLELVSLPI----PPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPG--NEGVGVVVEVGSGVSGLLVGQRVL   85 (323)
T ss_pred             ceEEeEeCCC----CCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCC--cceEEEEEEeCCCCCCCCCCCEEE
Confidence            3677777654    6789999999999999999999988764332222223444  589999999999999999999999


Q ss_pred             ec--cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 042784          110 RA--FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKL  187 (356)
Q Consensus       110 ~~--~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~  187 (356)
                      ..  .|+|++|+.++.+.++++   |++++.++ ++.+++.+.+||+++...+++.+|++|+|+|++|.+|++++++|+.
T Consensus        86 ~~~~~g~~~~~~~~~~~~~~~l---p~~~~~~~-~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~  161 (323)
T cd05282          86 PLGGEGTWQEYVVAPADDLIPV---PDSISDEQ-AAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKL  161 (323)
T ss_pred             EeCCCCcceeEEecCHHHeEEC---CCCCCHHH-HHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHH
Confidence            32  589999999999877554   99999988 7889999999999998888899999999999999999999999999


Q ss_pred             CCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCCEEEEEecc
Q 042784          188 KGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       188 ~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +|++|++++.++++.+.++ ++|++.++++.+ .++.+.+.+.++ +++|++|||+|+.....++++++++|+++.+|..
T Consensus       162 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~  239 (323)
T cd05282         162 LGFKTINVVRRDEQVEELK-ALGADEVIDSSP-EDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLL  239 (323)
T ss_pred             CCCeEEEEecChHHHHHHH-hcCCCEEecccc-hhHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccC
Confidence            9999999999999999997 899998998876 567778887774 5899999999998888899999999999999875


Q ss_pred             cccccccccccchhhhhhhhccceEEEEEeccccc-----chHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHH
Q 042784          267 SQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-----DRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLF  341 (356)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~  341 (356)
                      ....       ...+...+..+++++.+.....+.     ....+.++++++++.++.+.+.+.+.|+++++.+|++.+.
T Consensus       240 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~  312 (323)
T cd05282         240 SGEP-------VPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAE  312 (323)
T ss_pred             CCCC-------CCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHHHHHHHHHh
Confidence            4310       112233334488888887765542     2345678889999999999887778899999999999999


Q ss_pred             cCCCcceEEEE
Q 042784          342 SSSNIGKVVIQ  352 (356)
Q Consensus       342 ~~~~~gkvvi~  352 (356)
                      +++..+|+|++
T Consensus       313 ~~~~~~kvv~~  323 (323)
T cd05282         313 QPGRGGKVLLT  323 (323)
T ss_pred             cCCCCceEeeC
Confidence            88888899863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=4.4e-36  Score=276.69  Aligned_cols=306  Identities=22%  Similarity=0.195  Sum_probs=245.5

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ||+|++...        +.+++.+.+.    |.+ .++||+|||.++++|+.|++...|.+..   .+++...+++++|+
T Consensus         1 ~ka~~~~~~--------~~~~~~~~~~----p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~   65 (347)
T cd05278           1 MKALVYLGP--------GKIGLEEVPD----PKIQGPHDAIVRVTATSICGSDLHIYRGGVPG---AKHGMILGHEFVGE   65 (347)
T ss_pred             CceEEEecC--------CceEEEEcCC----CCCCCCCeEEEEEEEEEechhhHHHHcCCCCC---CCCCceeccceEEE
Confidence            467777743        4578887755    677 8999999999999999999988875432   22233444589999


Q ss_pred             EEEeccCCCCCCCCCEEEe--------------------------------ccCCeeeEEeecCC--cccccCCCCCCCC
Q 042784           92 ARVIRSKDSKYSDGDIVLR--------------------------------AFLPVAEYSLLPCD--LLTRKLDPASGIP  137 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~--------------------------------~~g~~a~~~~v~~~--~~~~~i~~P~~~s  137 (356)
                      |+++|++++++++||+|+.                                ..|+|++|+.++++  .++++   |++++
T Consensus        66 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~l---P~~~~  142 (347)
T cd05278          66 VVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKI---PDGLP  142 (347)
T ss_pred             EEEECCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEEC---CCCCC
Confidence            9999999999999999983                                14899999999987  56444   99999


Q ss_pred             ccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceee
Q 042784          138 FPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFN  216 (356)
Q Consensus       138 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~  216 (356)
                      +++ ++.++.+++|||+++ ...++++|++|+|.|+ |++|.+++|+|+.+|+ +|+++++++++.+.++ ++|++.+++
T Consensus       143 ~~~-aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~-g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~  218 (347)
T cd05278         143 DED-ALMLSDILPTGFHGA-ELAGIKPGSTVAVIGA-GPVGLCAVAGARLLGAARIIAVDSNPERLDLAK-EAGATDIIN  218 (347)
T ss_pred             HHH-Hhhhcchhhheeehh-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HhCCcEEEc
Confidence            998 789999999999998 5788999999999875 9999999999999997 8999888888888888 899988998


Q ss_pred             cCChhhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          217 YNSEMSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       217 ~~~~~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      +++ .++.+.+++.++ +++|++||++|+ ..+..++++++++|+++.+|......     . . ......+.+++++.+
T Consensus       219 ~~~-~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-----~-~-~~~~~~~~~~~~~~~  290 (347)
T cd05278         219 PKN-GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPD-----P-L-PLLGEWFGKNLTFKT  290 (347)
T ss_pred             CCc-chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCc-----c-c-CccchhhhceeEEEe
Confidence            876 567788887764 589999999987 68899999999999999998643311     0 0 011223467777766


Q ss_pred             EecccccchHHHHHHHHHHHHHcCCeeee--eeEEeChhhHHHHHHHHHcCCC-cceEEEEe
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGKIRSK--HVIYYGVESFLESLGSLFSSSN-IGKVVIQV  353 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~-~gkvvi~~  353 (356)
                      .....     .+.++++++++.++.+.+.  +...|+++++++|++.+..++. .+|+|+++
T Consensus       291 ~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         291 GLVPV-----RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             eccCc-----hhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            54322     4578889999999998863  5568999999999999988776 67998763

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=5.1e-36  Score=273.90  Aligned_cols=314  Identities=18%  Similarity=0.256  Sum_probs=238.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++...     +.+..+++++.++    |.+.++||+||+.++++|++|.....+........+..+|  +|++|+|
T Consensus         1 ~~a~~~~~~-----~~~~~~~~~~~~~----p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g--~e~~G~V   69 (326)
T cd08289           1 FQALVVEKD-----EDDVSVSVKNLTL----DDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPG--IDLAGTV   69 (326)
T ss_pred             CeeEEEecc-----CCcceeEEEEccC----CCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcc--cceeEEE
Confidence            578888754     2345788888755    6789999999999999999998765421111111234444  5899999


Q ss_pred             EEeccCCCCCCCCCEEEec--------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhC--C-
Q 042784           93 RVIRSKDSKYSDGDIVLRA--------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLG--Q-  161 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~--~-  161 (356)
                      +..|  +..+++||+|+..        .|+|++|+.++++.+...   |+++++++ ++.+++++.|||+++....  . 
T Consensus        70 ~~~~--~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~---p~~~~~~~-a~~~~~~~~ta~~~l~~~~~~~~  143 (326)
T cd08289          70 VESN--DPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPL---PKGLTLKE-AMILGTAGFTAALSIHRLEENGL  143 (326)
T ss_pred             EEcC--CCCCCCCCEEEEcccccCCCCCCcceeEEEEcHHHeEEC---CCCCCHHH-HhhhhhHHHHHHHHHHHHHhcCC
Confidence            8854  5679999999932        589999999999888554   99999998 7899999999999886432  2 


Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      ...+++|+|+|++|++|.+++++|+.+|++|+++++++++.+.++ ++|++.++++++ . ..+.+.+++++++|++|||
T Consensus       144 ~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~-~-~~~~~~~~~~~~~d~vld~  220 (326)
T cd08289         144 TPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLK-KLGAKEVIPREE-L-QEESIKPLEKQRWAGAVDP  220 (326)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHH-HcCCCEEEcchh-H-HHHHHHhhccCCcCEEEEC
Confidence            345789999999999999999999999999999999999999998 899988888764 2 3455666655689999999


Q ss_pred             CchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc-cchHHHHHHHHHHHHHcCCe
Q 042784          242 VGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       242 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~g~i  320 (356)
                      +|+..+..++++++++|+++.+|......       .......++.+++++.+...... .....+.++.+.+.+....+
T Consensus       221 ~g~~~~~~~~~~l~~~G~~i~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (326)
T cd08289         221 VGGKTLAYLLSTLQYGGSVAVSGLTGGGE-------VETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLATDLKPTQL  293 (326)
T ss_pred             CcHHHHHHHHHHhhcCCEEEEEeecCCCC-------CCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHhhcCcccc
Confidence            99998999999999999999998753211       11123445578888888753221 11223444445444433334


Q ss_pred             eeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          321 RSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       321 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ...+..+|+++++.+||+.+.+++..||+|+++
T Consensus       294 ~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         294 LNEIKQEITLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             ccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence            445678999999999999999999999999864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=1e-35  Score=273.32  Aligned_cols=305  Identities=18%  Similarity=0.184  Sum_probs=243.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..++       ....+++.++    |.++++||+|||.++++|+.|++...|....  ..+..+|  ++++|+|
T Consensus         1 mka~~~~~~~-------~~~~~~~~~~----p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g--~e~~G~V   65 (338)
T PRK09422          1 MKAAVVNKDH-------TGDVVVEKTL----RPLKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILG--HEGIGIV   65 (338)
T ss_pred             CeEEEecCCC-------CCceEEEecC----CCCCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCC--cccceEE
Confidence            5778877542       1222777755    7799999999999999999999988765321  1233444  5899999


Q ss_pred             EEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +.+|++++.|++||+|++.                              .|++++|+.++.+.++..   |+++++++ +
T Consensus        66 ~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~---p~~~~~~~-a  141 (338)
T PRK09422         66 KEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKV---PEGLDPAQ-A  141 (338)
T ss_pred             EEECCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeC---CCCCCHHH-e
Confidence            9999999999999999831                              489999999999877544   99999998 7


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKL-KGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~-~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      ++++..++|||+++ ..+++++|++|||+| +|++|++++++|+. .|++|+++++++++.+.++ ++|++.+++++...
T Consensus       142 a~l~~~~~ta~~~~-~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~~  218 (338)
T PRK09422        142 SSITCAGVTTYKAI-KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK-EVGADLTINSKRVE  218 (338)
T ss_pred             ehhhcchhHHHHHH-HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH-HcCCcEEecccccc
Confidence            99999999999998 578899999999999 59999999999998 4999999999999999997 89998888875324


Q ss_pred             hHHHHHHHHCCCCce-EEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc
Q 042784          222 SFDAALTKYFPNGID-VYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH  300 (356)
Q Consensus       222 ~~~~~i~~~~~~~~d-~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (356)
                      ++.+.+++.++ ++| +++++.+...+..++++++++|+++.+|.....        ...+...+..+...+.+..... 
T Consensus       219 ~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-  288 (338)
T PRK09422        219 DVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPES--------MDLSIPRLVLDGIEVVGSLVGT-  288 (338)
T ss_pred             cHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCC--------ceecHHHHhhcCcEEEEecCCC-
Confidence            56677777665 688 555666667899999999999999999865321        1123344455667776543321 


Q ss_pred             cchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          301 MDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       301 ~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                          .+.+++++++++++.+.+.++ .++++++++|++.+.++...||+|+.+.
T Consensus       289 ----~~~~~~~~~l~~~g~l~~~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~~~  337 (338)
T PRK09422        289 ----RQDLEEAFQFGAEGKVVPKVQ-LRPLEDINDIFDEMEQGKIQGRMVIDFT  337 (338)
T ss_pred             ----HHHHHHHHHHHHhCCCCccEE-EEcHHHHHHHHHHHHcCCccceEEEecC
Confidence                356788999999999877655 6899999999999999999999998764

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=100.00  E-value=1.4e-35  Score=270.74  Aligned_cols=311  Identities=21%  Similarity=0.293  Sum_probs=243.8

Q ss_pred             eeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEE
Q 042784           14 KEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIAR   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~   93 (356)
                      ||++++..     ++++.++++++|+    |.+.++||+||+.++++|++|.+...|.+...  .+++...+++++|+|+
T Consensus         1 ~a~~~~~~-----~~~~~~~~~~~~~----p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~V~   69 (323)
T TIGR02823         1 KALVVEKE-----DGKVSAQVETLDL----SDLPEGDVLIKVAYSSLNYKDALAITGKGGVV--RSYPMIPGIDAAGTVV   69 (323)
T ss_pred             CeEEEccC-----CCCcceeEeecCC----CCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCC--CCCCccceeeeEEEEE
Confidence            45666643     4567889999866    77999999999999999999999888754221  2223344458999998


Q ss_pred             EeccCCCCCCCCCEEEec--------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHh--CCCC
Q 042784           94 VIRSKDSKYSDGDIVLRA--------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVL--GQPK  163 (356)
Q Consensus        94 ~vg~~v~~~~~Gd~V~~~--------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~--~~~~  163 (356)
                      .  +++..|++||+|+..        .|++++|+.++.+.++.+   |+++++++ ++.++..+.+|+.++...  +.+.
T Consensus        70 ~--~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~i---P~~~~~~~-aa~~~~~~~ta~~~~~~~~~~~~~  143 (323)
T TIGR02823        70 S--SEDPRFREGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPL---PEGLSLRE-AMALGTAGFTAALSVMALERNGLT  143 (323)
T ss_pred             e--cCCCCCCCCCEEEEccCCCCCCCCccceEEEEEchhheEEC---CCCCCHHH-hhhhhhhHHHHHHHHHHhhhcCCC
Confidence            8  567789999999932        489999999999887554   99999998 789999999999887543  3378


Q ss_pred             CCC-EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGS-NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~-~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +|+ +|+|+|++|.+|.+++++|+.+|++|++++.++++.+.++ ++|++.+++..+ .+.  .++.+.++++|.++||+
T Consensus       144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~--~~~~~~~~~~d~vld~~  219 (323)
T TIGR02823       144 PEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLK-ELGASEVIDRED-LSP--PGKPLEKERWAGAVDTV  219 (323)
T ss_pred             CCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-hcCCcEEEcccc-HHH--HHHHhcCCCceEEEECc
Confidence            898 9999999999999999999999999998888888889997 899988887654 222  45555555699999999


Q ss_pred             chhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-chHHHHHHHHHHHHHcCCee
Q 042784          243 GGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       243 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~i~  321 (356)
                      |+..+..++++++++|+++.+|......       ...+...++.+++++.+....... ....+.++++.+++..+.+.
T Consensus       220 g~~~~~~~~~~l~~~G~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (323)
T TIGR02823       220 GGHTLANVLAQLKYGGAVAACGLAGGPD-------LPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLE  292 (323)
T ss_pred             cHHHHHHHHHHhCCCCEEEEEcccCCCC-------ccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCc
Confidence            9988999999999999999998763210       111223455788888886543221 22335567777888888876


Q ss_pred             eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          322 SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       322 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +. ...|+++++++|++.+.+++..+|+|+++
T Consensus       293 ~~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~~  323 (323)
T TIGR02823       293 SI-TREITLEELPEALEQILAGQHRGRTVVDV  323 (323)
T ss_pred             Cc-eeeecHHHHHHHHHHHhCCCccceEEEeC
Confidence            64 45899999999999999999999999864

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.2e-35  Score=273.61  Aligned_cols=310  Identities=19%  Similarity=0.191  Sum_probs=250.4

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++..++       ..+++++.+.    |.+.+++|+||+.++++|+.|+....|.... .  .++...+++++|+|
T Consensus         1 m~a~~~~~~~-------~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~--~~~~~~g~e~~G~V   66 (345)
T cd08260           1 MRAAVYEEFG-------EPLEIREVPD----PEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-V--TLPHVPGHEFAGVV   66 (345)
T ss_pred             CeeEEEecCC-------CCcEEEEccC----CCCCCCeEEEEEEEeeccHHHHHHhcCCCCC-C--CCCeeeccceeEEE
Confidence            6888887553       3478887755    6789999999999999999999988875332 1  22334445899999


Q ss_pred             EEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCC--cccccCCCCCCCCcccc
Q 042784           93 RVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCD--LLTRKLDPASGIPFPDY  141 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~--~~~~~i~~P~~~s~~~~  141 (356)
                      +.+|+++..+++||+|+.                             ..|+|++|+.++..  .++.+   |++++.++ 
T Consensus        67 ~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~i---P~~~~~~~-  142 (345)
T cd08260          67 VEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRL---PDDVDFVT-  142 (345)
T ss_pred             EEECCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEEC---CCCCCHHH-
Confidence            999999999999999983                             15899999999974  56444   99999988 


Q ss_pred             ccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          142 LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       142 aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      ++.++..++|||+++...+++.++++|+|+| +|++|++++++|+..|++|++++.++++.+.++ ++|+++++++++..
T Consensus       143 aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~~~  220 (345)
T cd08260         143 AAGLGCRFATAFRALVHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELAR-ELGAVATVNASEVE  220 (345)
T ss_pred             hhhhccchHHHHHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HhCCCEEEccccch
Confidence            7899999999999997788899999999999 699999999999999999999999999999998 79999899887424


Q ss_pred             hHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc
Q 042784          222 SFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH  300 (356)
Q Consensus       222 ~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (356)
                      ++.+.+.++.++++|++|||+|+ ..+..++++++++|+++.+|......     .....++..++.+++++.+..... 
T Consensus       221 ~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-  294 (345)
T cd08260         221 DVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEE-----AGVALPMDRVVARELEIVGSHGMP-  294 (345)
T ss_pred             hHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCC-----CccccCHHHHhhcccEEEeCCcCC-
Confidence            66777777765589999999985 68889999999999999998754311     001123334457778877765422 


Q ss_pred             cchHHHHHHHHHHHHHcCCeeee--eeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          301 MDRFADFTVEMESYIKEGKIRSK--HVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       301 ~~~~~~~l~~~~~~~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                          .+.++++++++.++.+.+.  +...++++++++|++.+.+++..||+|++
T Consensus       295 ----~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         295 ----AHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             ----HHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence                3567889999999988763  56789999999999999999999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=1.1e-35  Score=277.44  Aligned_cols=306  Identities=16%  Similarity=0.124  Sum_probs=244.8

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      |+++++..        ++.+++++.+.    |.| ++++|+||+.++++|++|...+.|.+.. ..  ++...++|++|+
T Consensus         1 m~a~~~~~--------~~~~~~~~~~~----p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~--~p~~~G~e~~G~   65 (386)
T cd08283           1 MKALVWHG--------KGDVRVEEVPD----PKIEDPTDAIVRVTATAICGSDLHLYHGYIPG-MK--KGDILGHEFMGV   65 (386)
T ss_pred             CeeEEEec--------CCCceEEeCCC----CCCCCCCeEEEEEEEEecchhhhhhhcCCCCC-CC--CCccccccceEE
Confidence            56777652        36788888755    666 5999999999999999999999875433 12  334445599999


Q ss_pred             EEEeccCCCCCCCCCEEEec-------------------------------------------------cCCeeeEEeec
Q 042784           92 ARVIRSKDSKYSDGDIVLRA-------------------------------------------------FLPVAEYSLLP  122 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~-------------------------------------------------~g~~a~~~~v~  122 (356)
                      |+++|+++.++++||+|+..                                                 .|+|++|++++
T Consensus        66 V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~  145 (386)
T cd08283          66 VEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVP  145 (386)
T ss_pred             EEEeCCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcc
Confidence            99999999999999999831                                                 37899999999


Q ss_pred             CC--cccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          123 CD--LLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       123 ~~--~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      .+  .++. +  |+++++++ +++++..++|||+++ ..+++.+|++|+|+|+ |++|.+++++|+..|+ +|++++.++
T Consensus       146 ~~~~~~~~-l--p~~~~~~~-aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~-G~vG~~~~~la~~~g~~~vi~~~~~~  219 (386)
T cd08283         146 FADVGPFK-I--PDDLSDEK-ALFLSDILPTGYHAA-ELAEVKPGDTVAVWGC-GPVGLFAARSAKLLGAERVIAIDRVP  219 (386)
T ss_pred             cccCeEEE-C--CCCCCHHH-HhhhccchhhhHHHH-hhccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            87  5544 4  99999998 788999999999999 6788999999999974 9999999999999998 699999999


Q ss_pred             HHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchh----------------------hHHHHHHhccc
Q 042784          200 DNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGK----------------------MLEAVLNHVNV  256 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~----------------------~~~~~~~~l~~  256 (356)
                      ++.++++ +++...++++....++.+.++++++ +++|++|||+|++                      .+..+++++++
T Consensus       220 ~~~~~~~-~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  298 (386)
T cd08283         220 ERLEMAR-SHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRK  298 (386)
T ss_pred             HHHHHHH-HcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhcc
Confidence            9999999 6744457777652248888888774 4899999999742                      67889999999


Q ss_pred             CCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHH
Q 042784          257 HARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFL  334 (356)
Q Consensus       257 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~  334 (356)
                      +|+++.+|.....       ....+....+.+++++.+....     ..+.++++++++.++++.+  .++..|+++++.
T Consensus       299 ~G~iv~~g~~~~~-------~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~  366 (386)
T cd08283         299 GGTVSIIGVYGGT-------VNKFPIGAAMNKGLTLRMGQTH-----VQRYLPRLLELIESGELDPSFIITHRLPLEDAP  366 (386)
T ss_pred             CCEEEEEcCCCCC-------cCccCHHHHHhCCcEEEeccCC-----chHHHHHHHHHHHcCCCChhHceEEEecHHHHH
Confidence            9999999875431       1112333457788888876432     2356888999999999986  356789999999


Q ss_pred             HHHHHHHcCC-CcceEEEE
Q 042784          335 ESLGSLFSSS-NIGKVVIQ  352 (356)
Q Consensus       335 ~a~~~~~~~~-~~gkvvi~  352 (356)
                      +|++.+.++. ..+|+|++
T Consensus       367 ~a~~~~~~~~~~~~k~~~~  385 (386)
T cd08283         367 EAYKIFDKKEDGCIKVVLK  385 (386)
T ss_pred             HHHHHHHhCCCCeEEEEec
Confidence            9999998776 56799986

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=1.5e-35  Score=269.89  Aligned_cols=310  Identities=21%  Similarity=0.242  Sum_probs=246.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++.+.+.     +.++.+++.+.+.    |.++++||+||+.++++|+.|.....|.... ...|..+|  ++++|+|
T Consensus         1 ~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g--~e~~G~v   68 (320)
T cd08243           1 MKAIVIEQP-----GGPEVLKLREIPI----PEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLG--IEAVGEV   68 (320)
T ss_pred             CeEEEEcCC-----CCccceEEeecCC----CCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccc--ceeEEEE
Confidence            456666532     3345677776644    5689999999999999999999988764321 12233444  5899999


Q ss_pred             EEeccCCCCCCCCCEEEecc---------CCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCC
Q 042784           93 RVIRSKDSKYSDGDIVLRAF---------LPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPK  163 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~~---------g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~  163 (356)
                      +.+|.  ..+++||+|+ ++         |+|++|+.++.+.++++   |+++++++ ++++++++.|||+++.+..+++
T Consensus        69 ~~vG~--~~~~~Gd~V~-~~~~~~~~~~~g~~~~~~~~~~~~~~~i---p~~~~~~~-aa~~~~~~~ta~~~l~~~~~~~  141 (320)
T cd08243          69 EEAPG--GTFTPGQRVA-TAMGGMGRTFDGSYAEYTLVPNEQVYAI---DSDLSWAE-LAALPETYYTAWGSLFRSLGLQ  141 (320)
T ss_pred             EEecC--CCCCCCCEEE-EecCCCCCCCCcccceEEEcCHHHcEeC---CCCCCHHH-HHhcchHHHHHHHHHHHhcCCC
Confidence            99995  5799999999 43         89999999999887555   99999988 7999999999999998888899


Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|++|+|+|++|++|.+++++|+..|++|++++.++++.+.++ ++|++++++. . .++.+.++++ ++++|+++||+|
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~-~-~~~~~~i~~~-~~~~d~vl~~~~  217 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK-ELGADEVVID-D-GAIAEQLRAA-PGGFDKVLELVG  217 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEEec-C-ccHHHHHHHh-CCCceEEEECCC
Confidence            9999999999999999999999999999999999999999997 8999877754 3 5677778777 778999999999


Q ss_pred             hhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeee
Q 042784          244 GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSK  323 (356)
Q Consensus       244 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~  323 (356)
                      +..+..++++++++|+++.+|........  ..... .....+.+++++.++.....   ..+.+++++++++++.+++.
T Consensus       218 ~~~~~~~~~~l~~~g~~v~~g~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  291 (320)
T cd08243         218 TATLKDSLRHLRPGGIVCMTGLLGGQWTL--EDFNP-MDDIPSGVNLTLTGSSSGDV---PQTPLQELFDFVAAGHLDIP  291 (320)
T ss_pred             hHHHHHHHHHhccCCEEEEEccCCCCccc--CCcch-hhhhhhccceEEEecchhhh---hHHHHHHHHHHHHCCceecc
Confidence            98899999999999999999875431100  00000 11112356777776654332   13567889999999999887


Q ss_pred             eeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          324 HVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       324 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      +...|+++++++|++.+.+++..+|+|+
T Consensus       292 ~~~~~~l~~~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         292 PSKVFTFDEIVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             cccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            7778999999999999998888889886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=100.00  E-value=6.4e-36  Score=274.58  Aligned_cols=306  Identities=19%  Similarity=0.166  Sum_probs=244.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |++++++..     + ++.+++++.+.    |+++++||+||+.++++|++|+....+..  ....+..+  +++++|+|
T Consensus         1 m~a~~~~~~-----~-~~~~~~~~~~~----p~~~~~ev~i~v~~~~i~~~d~~~~~~~~--~~~~~~~~--g~e~~G~v   66 (339)
T cd08249           1 QKAAVLTGP-----G-GGLLVVVDVPV----PKPGPDEVLVKVKAVALNPVDWKHQDYGF--IPSYPAIL--GCDFAGTV   66 (339)
T ss_pred             CceEEeccC-----C-CCcccccCCCC----CCCCCCEEEEEEEEEEcCchheeeeeccc--ccCCCcee--eeeeeEEE
Confidence            567777643     2 57788888755    78999999999999999999998875432  11123334  45899999


Q ss_pred             EEeccCCCCCCCCCEEEec----------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCC
Q 042784           93 RVIRSKDSKYSDGDIVLRA----------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQP  162 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~----------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~  162 (356)
                      +.+|++++.+++||+|+..          .|+|++|+.++.+.++.+   |+++++++ ++.+++.+.|||+++.+..++
T Consensus        67 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i---p~~~~~~~-~~~~~~~~~ta~~~l~~~~~~  142 (339)
T cd08249          67 VEVGSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKI---PDNISFEE-AATLPVGLVTAALALFQKLGL  142 (339)
T ss_pred             EEeCCCcCcCCCCCEEEEEeccccCCCCCCCcccceEEechhheEEC---CCCCCHHH-ceecchHHHHHHHHHhccccC
Confidence            9999999999999999932          289999999999887554   99999998 789999999999998766554


Q ss_pred             ----------CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC
Q 042784          163 ----------KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       163 ----------~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                                .++++|+|+|++|++|++++++|+..|++|++++ ++++.+.++ ++|+++++++.+ .++.+.++++++
T Consensus       143 ~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~-~~g~~~v~~~~~-~~~~~~l~~~~~  219 (339)
T cd08249         143 PLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVK-SLGADAVFDYHD-PDVVEDIRAATG  219 (339)
T ss_pred             CCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHH-hcCCCEEEECCC-chHHHHHHHhcC
Confidence                      7899999999999999999999999999999888 668889997 899998999876 678888888777


Q ss_pred             CCceEEEECCch-hhHHHHHHhccc--CCEEEEEecccccccccccccchhhhhhhhccceEEEE---Eecc----cccc
Q 042784          233 NGIDVYLDNVGG-KMLEAVLNHVNV--HARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG---FMIG----SHMD  302 (356)
Q Consensus       233 ~~~d~vld~~g~-~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~  302 (356)
                      +++|++||++|. ..+..+++++++  +|+++.+|......              .+..+.++..   ..+.    ....
T Consensus       220 ~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~  285 (339)
T cd08249         220 GKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEET--------------EPRKGVKVKFVLGYTVFGEIPEDRE  285 (339)
T ss_pred             CCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccc--------------cCCCCceEEEEEeeeeccccccccc
Confidence            789999999998 789999999999  99999998754311              0111122222   2211    1112


Q ss_pred             hHHHHHHHHHHHHHcCCeeeeeeEEeC--hhhHHHHHHHHHcCC-CcceEEEEe
Q 042784          303 RFADFTVEMESYIKEGKIRSKHVIYYG--VESFLESLGSLFSSS-NIGKVVIQV  353 (356)
Q Consensus       303 ~~~~~l~~~~~~~~~g~i~~~~~~~~~--~~~~~~a~~~~~~~~-~~gkvvi~~  353 (356)
                      .....++++++++.++.+.+.+...++  ++++++|++.+.+++ ..+|+|+++
T Consensus       286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         286 FGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             chHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            234567889999999999887666788  999999999999988 889999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=3.2e-35  Score=272.93  Aligned_cols=311  Identities=16%  Similarity=0.155  Sum_probs=240.6

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ++|+.++...       ++.+++++.|.    |++.++||+|||.++++|++|.+...|...  ...|..+|  +|++|+
T Consensus         7 ~~~a~~~~~~-------~~~~~l~~~p~----p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~--~~~p~v~G--~e~~G~   71 (373)
T cd08299           7 KCKAAVLWEP-------KKPFSIEEIEV----APPKAHEVRIKIVATGICRSDDHVVSGKLV--TPFPVILG--HEAAGI   71 (373)
T ss_pred             eeEEEEEecC-------CCCcEEEEeec----CCCCCCEEEEEEEEEEcCcccHHHhcCCCC--CCCCcccc--ccceEE
Confidence            3666655532       24588888765    778999999999999999999999887531  12334444  599999


Q ss_pred             EEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEee
Q 042784           92 ARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSLL  121 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~v  121 (356)
                      |+++|++++.+++||+|+..                                                  .|+|+||+++
T Consensus        72 V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v  151 (373)
T cd08299          72 VESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVV  151 (373)
T ss_pred             EEEeCCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEe
Confidence            99999999999999999832                                                  3789999999


Q ss_pred             cCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChH
Q 042784          122 PCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDD  200 (356)
Q Consensus       122 ~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~  200 (356)
                      +.+.++++   |+++++++ ++.+.+++.+||+++...+++++|++|+|+|+ |++|++++++|+..|+ +|++++++++
T Consensus       152 ~~~~~~~l---P~~l~~~~-aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~  226 (373)
T cd08299         152 DEIAVAKI---DAAAPLEK-VCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSAIMGCKAAGASRIIAVDINKD  226 (373)
T ss_pred             cccceeeC---CCCCChHH-hheeccchHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            99888554   99999998 78899999999999877889999999999975 9999999999999999 8999999999


Q ss_pred             HHHHHHHHhCCCceeecCCh-hhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhc-ccCCEEEEEeccccccccccccc
Q 042784          201 NVKLLKEEFGYDDAFNYNSE-MSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHV-NVHARIILCGMISQYNKVWTERD  277 (356)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~-~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~  277 (356)
                      +++.++ ++|+++++++.+. .++.+.+.+++++++|+++||+|. ..+..++..+ +++|+++.+|......     . 
T Consensus       227 ~~~~a~-~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~-----~-  299 (373)
T cd08299         227 KFAKAK-ELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQ-----N-  299 (373)
T ss_pred             HHHHHH-HcCCceEecccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCc-----e-
Confidence            999998 8999988887641 236677777776789999999996 5677767655 6799999998754310     0 


Q ss_pred             chhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCe--eeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          278 GVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKI--RSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ...... .+.++.++.++..+.+.+  .+.+.++++++.++.+  ++.++++|+++++.+|++.+.+++. .|+++++
T Consensus       300 ~~~~~~-~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~~  373 (373)
T cd08299         300 LSINPM-LLLTGRTWKGAVFGGWKS--KDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLTF  373 (373)
T ss_pred             eecCHH-HHhcCCeEEEEEecCCcc--HHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            111111 234677888877665432  2344556666666644  4457789999999999999887664 5887753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3e-35  Score=270.09  Aligned_cols=303  Identities=19%  Similarity=0.175  Sum_probs=245.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++..+        +.+++.+.++    |.+.++||+|||.++++|+.|+....|.....   +++...+++++|+|
T Consensus         1 ~~a~~~~~~--------~~~~~~~~~~----~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~---~~~~~~g~e~~G~V   65 (337)
T cd08261           1 MKALVCEKP--------GRLEVVDIPE----PVPGAGEVLVRVKRVGICGSDLHIYHGRNPFA---SYPRILGHELSGEV   65 (337)
T ss_pred             CeEEEEeCC--------CceEEEECCC----CCCCCCeEEEEEEEEeEcccChHHHcCCCCcC---CCCcccccccEEEE
Confidence            577777642        4678888755    77899999999999999999999887643221   22334455899999


Q ss_pred             EEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|++++.+++||+|+.                             ..|+|++|+.++++ ++++   |+++++++ ++
T Consensus        66 ~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~---p~~~~~~~-aa  140 (337)
T cd08261          66 VEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLV---PEGLSLDQ-AA  140 (337)
T ss_pred             EEeCCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEEC---CCCCCHHH-hh
Confidence            999999999999999983                             15899999999998 7554   99999998 56


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      .+ ..+.++++++ ...++.+|++|||+| +|.+|.+++++|+.+|++|+++.+++++.+.++ ++|+++++++.+ .++
T Consensus       141 ~~-~~~~~a~~~~-~~~~l~~g~~vLI~g-~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~-~~g~~~v~~~~~-~~~  215 (337)
T cd08261         141 LV-EPLAIGAHAV-RRAGVTAGDTVLVVG-AGPIGLGVIQVAKARGARVIVVDIDDERLEFAR-ELGADDTINVGD-EDV  215 (337)
T ss_pred             hh-chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHH-HhCCCEEecCcc-cCH
Confidence            55 6788899888 678999999999997 599999999999999999999988999999997 899999999886 568


Q ss_pred             HHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc
Q 042784          224 DAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM  301 (356)
Q Consensus       224 ~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (356)
                      .+.+.++++ .++|+++||+|+ ..+..++++++++|+++.+|.....        ...+...+..+++++.+..     
T Consensus       216 ~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~--------~~~~~~~~~~~~~~~~~~~-----  282 (337)
T cd08261         216 AARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGP--------VTFPDPEFHKKELTILGSR-----  282 (337)
T ss_pred             HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCC--------CccCHHHHHhCCCEEEEec-----
Confidence            888888764 579999999976 5788999999999999998865421        1112234455667766542     


Q ss_pred             chHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcC-CCcceEEEEe
Q 042784          302 DRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSS-SNIGKVVIQV  353 (356)
Q Consensus       302 ~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~~  353 (356)
                      ....+.++++++++.++.+++  .+..++++++++++++.+.++ ...+|+|+++
T Consensus       283 ~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         283 NATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             cCChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            123467888999999999987  677789999999999999988 4778999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=2.1e-35  Score=271.49  Aligned_cols=308  Identities=18%  Similarity=0.147  Sum_probs=240.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|+.+..+       +.+++.+.+.    |.|+++||+||+.++++|++|.+++.|........++++..+++++|+|
T Consensus         1 ~~~~~~~~~~-------~~~~~~~~~~----p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V   69 (341)
T PRK05396          1 MKALVKLKAE-------PGLWLTDVPV----PEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEV   69 (341)
T ss_pred             CceEEEecCC-------CceEEEECCC----CCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEE
Confidence            4677776432       6789988866    7899999999999999999999987653211111223334455999999


Q ss_pred             EEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +++|++++.+++||+|+.                             ..|+|++|+.++.+.++.+   |+++++++ ++
T Consensus        70 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i---P~~l~~~~-~~  145 (341)
T PRK05396         70 VEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKI---PDDIPDDL-AA  145 (341)
T ss_pred             EEeCCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEEC---cCCCCHHH-hH
Confidence            999999999999999993                             1489999999999887554   99999987 44


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                       +...+.++++++..  ...+|++|+|+|+ |++|++++++|+..|+ +|++++.++++.++++ ++|++.++++++ .+
T Consensus       146 -~~~~~~~~~~~~~~--~~~~g~~vlV~~~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~lg~~~~~~~~~-~~  219 (341)
T PRK05396        146 -IFDPFGNAVHTALS--FDLVGEDVLITGA-GPIGIMAAAVAKHVGARHVVITDVNEYRLELAR-KMGATRAVNVAK-ED  219 (341)
T ss_pred             -hhhHHHHHHHHHHc--CCCCCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HhCCcEEecCcc-cc
Confidence             45666677666542  3468999999875 9999999999999999 7888888889998888 899999998876 67


Q ss_pred             HHHHHHHHC-CCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc
Q 042784          223 FDAALTKYF-PNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH  300 (356)
Q Consensus       223 ~~~~i~~~~-~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (356)
                      +.+.+++++ ++++|++|||.|. ..+..++++++++|+++.+|......        ......+..+++++.++.....
T Consensus       220 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~  291 (341)
T PRK05396        220 LRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDM--------AIDWNKVIFKGLTIKGIYGREM  291 (341)
T ss_pred             HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCC--------cccHHHHhhcceEEEEEEccCc
Confidence            888888877 4589999999886 47889999999999999998754311        1123455667777777642221


Q ss_pred             cchHHHHHHHHHHHHHcC-CeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          301 MDRFADFTVEMESYIKEG-KIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       301 ~~~~~~~l~~~~~~~~~g-~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                          .+.+..+++++.++ ++.+.+..+++++++++|++.+.+++ .||+|++++
T Consensus       292 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~gk~vv~~~  341 (341)
T PRK05396        292 ----FETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQ-SGKVILDWD  341 (341)
T ss_pred             ----cchHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence                23456678888888 56566778899999999999998877 799999864

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=3.2e-35  Score=270.12  Aligned_cols=304  Identities=17%  Similarity=0.127  Sum_probs=238.6

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..        ++.+++++++.    |.|+++||+||+.++++|++|.+...|....   .+++...++|++|+|
T Consensus         1 m~a~~~~~--------~~~~~~~~~~~----p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~---~~~p~i~G~e~~G~V   65 (339)
T PRK10083          1 MKSIVIEK--------PNSLAIEERPI----PQPAAGEVRVKVKLAGICGSDSHIYRGHNPF---AKYPRVIGHEFFGVI   65 (339)
T ss_pred             CeEEEEec--------CCeeEEEeccC----CCCCCCeEEEEEEEEEEcccchHHHcCCCCc---CCCCcccccceEEEE
Confidence            46777764        25688888865    7789999999999999999999988764321   123444455999999


Q ss_pred             EEeccCCCCCCCCCEEEe--------------------------c---cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR--------------------------A---FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~--------------------------~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|+++..+++||+|++                          +   .|+|++|+.++.+.++++   |++++.+. + 
T Consensus        66 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i---p~~~~~~~-a-  140 (339)
T PRK10083         66 DAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRI---PDAIADQY-A-  140 (339)
T ss_pred             EEECCCCccCCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEEC---cCCCCHHH-H-
Confidence            999999999999999972                          1   489999999999888555   99999987 4 


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHH-CCC-EEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKL-KGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~-~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      ++...+.++++++ ..+++++|++|+|+| +|++|++++|+|+. +|+ .|+++++++++.++++ ++|+++++++++ .
T Consensus       141 ~~~~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~~~~-~  216 (339)
T PRK10083        141 VMVEPFTIAANVT-GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK-ESGADWVINNAQ-E  216 (339)
T ss_pred             hhhchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HhCCcEEecCcc-c
Confidence            4667888888655 578899999999999 59999999999996 699 5777888899999998 899999998875 5


Q ss_pred             hHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc
Q 042784          222 SFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH  300 (356)
Q Consensus       222 ~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (356)
                      ++.+.+.. .+.++|++||++|. ..+..++++++++|+++.+|.....     ..   .+...+..+++++.+...   
T Consensus       217 ~~~~~~~~-~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~---~~~~~~~~~~~~~~~~~~---  284 (339)
T PRK10083        217 PLGEALEE-KGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEP-----SE---IVQQGITGKELSIFSSRL---  284 (339)
T ss_pred             cHHHHHhc-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCC-----ce---ecHHHHhhcceEEEEEec---
Confidence            56666543 23357899999995 5889999999999999999875421     11   122233356777665432   


Q ss_pred             cchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcC-CCcceEEEEecC
Q 042784          301 MDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSS-SNIGKVVIQVKA  355 (356)
Q Consensus       301 ~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~~~~  355 (356)
                         ..+.++++++++.++.+.+  .++++|+++++++|++.+.++ ...+|+|+++.+
T Consensus       285 ---~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~  339 (339)
T PRK10083        285 ---NANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE  339 (339)
T ss_pred             ---ChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence               1256788999999999987  477899999999999999865 456899998764

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-35  Score=269.60  Aligned_cols=304  Identities=20%  Similarity=0.237  Sum_probs=245.5

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |+++++.+++       +.+++++.+.    |.+.++||+||+.++++|++|++...|....   .+++...+++++|+|
T Consensus         1 m~a~~~~~~~-------~~~~~~~~~~----~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~v   66 (334)
T PRK13771          1 MKAVILPGFK-------QGYRIEEVPD----PKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR---MKYPVILGHEVVGTV   66 (334)
T ss_pred             CeeEEEcCCC-------CCcEEEeCCC----CCCCCCeEEEEEEEEeechhhHHHhcCCCCC---CCCCeeccccceEEE
Confidence            5677776543       3588888755    7899999999999999999999888764321   122333445899999


Q ss_pred             EEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|+++..+++||+|+..                             .|+|++|+.++.+.++.+   |+++++.+ ++
T Consensus        67 ~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l---p~~~~~~~-~a  142 (334)
T PRK13771         67 EEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKV---PPNVSDEG-AV  142 (334)
T ss_pred             EEeCCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEEC---CCCCCHHH-hh
Confidence            9999999889999999932                             478999999999887555   99999988 78


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      .+.+.+.+||+++... +++++++|+|+|++|.+|++++++|+..|++|+++++++++.+.++ ++ ++.++++.   ++
T Consensus       143 ~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~-~~-~~~~~~~~---~~  216 (334)
T PRK13771        143 IVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVS-KY-ADYVIVGS---KF  216 (334)
T ss_pred             cccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HH-HHHhcCch---hH
Confidence            9999999999999765 8999999999999999999999999999999999999999999997 77 76666654   45


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccch
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDR  303 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (356)
                      .+.++++  +++|+++||+|+.....++++++++|+++.+|......      .........+.+++++.+...     .
T Consensus       217 ~~~v~~~--~~~d~~ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~  283 (334)
T PRK13771        217 SEEVKKI--GGADIVIETVGTPTLEESLRSLNMGGKIIQIGNVDPSP------TYSLRLGYIILKDIEIIGHIS-----A  283 (334)
T ss_pred             HHHHHhc--CCCcEEEEcCChHHHHHHHHHHhcCCEEEEEeccCCCC------CcccCHHHHHhcccEEEEecC-----C
Confidence            5566654  36999999999988899999999999999999754311      000112223567777776532     1


Q ss_pred             HHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          304 FADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       304 ~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ..+.++++++++.++.+++.++..|+++++++|++.+.++...||+|++.
T Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        284 TKRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             CHHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence            24668889999999999888888999999999999999888889999865

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=4.9e-35  Score=271.15  Aligned_cols=308  Identities=17%  Similarity=0.203  Sum_probs=248.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++...+       +.++++++++    |.+++++|+||+.++++|+.|+....|...    .+++...+++++|+|
T Consensus         1 m~a~~~~~~~-------~~~~~~~~~~----p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V   65 (363)
T cd08279           1 MRAAVLHEVG-------KPLEIEEVEL----DDPGPGEVLVRIAAAGLCHSDLHVVTGDLP----APLPAVLGHEGAGVV   65 (363)
T ss_pred             CeEEEEecCC-------CCceEEEeeC----CCCCCCeEEEEEEEeecCcHHHHHhcCCCC----CCCCccccccceEEE
Confidence            5788888653       4578888866    778999999999999999999998876432    223333445899999


Q ss_pred             EEeccCCCCCCCCCEEEe-------------------------------------------------ccCCeeeEEeecC
Q 042784           93 RVIRSKDSKYSDGDIVLR-------------------------------------------------AFLPVAEYSLLPC  123 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~-------------------------------------------------~~g~~a~~~~v~~  123 (356)
                      +.+|++++.+++||+|+.                                                 ..|+|++|+.++.
T Consensus        66 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  145 (363)
T cd08279          66 EEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPE  145 (363)
T ss_pred             EEeCCCccccCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEecc
Confidence            999999999999999983                                                 1488999999999


Q ss_pred             CcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHH
Q 042784          124 DLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNV  202 (356)
Q Consensus       124 ~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~  202 (356)
                      +.++.+   |+++++++ ++.+++++++||.++.+.+++.++++|+|+| +|++|.+++++|+..|++ |++++.++++.
T Consensus       146 ~~~~~l---p~~~~~~~-aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~  220 (363)
T cd08279         146 ASVVKI---DDDIPLDR-AALLGCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARIAGASRIIAVDPVPEKL  220 (363)
T ss_pred             ccEEEC---CCCCChHH-eehhcchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEcCCHHHH
Confidence            888555   99999998 7889999999999988888999999999996 499999999999999995 99999899999


Q ss_pred             HHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchh
Q 042784          203 KLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVR  280 (356)
Q Consensus       203 ~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  280 (356)
                      +.++ ++|++++++++. .++...+++++ ++++|++||++++ ..+..++++++++|+++.+|......      ....
T Consensus       221 ~~~~-~~g~~~vv~~~~-~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~------~~~~  292 (363)
T cd08279         221 ELAR-RFGATHTVNASE-DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGE------TVSL  292 (363)
T ss_pred             HHHH-HhCCeEEeCCCC-ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCc------cccc
Confidence            9987 899988888876 57777888776 4689999999995 58899999999999999998654210      1112


Q ss_pred             hhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEE
Q 042784          281 NLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVV  350 (356)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv  350 (356)
                      +...+..++..+.+......  ...+.+++++++++++.+.+  .+..+|+++++.+|++.+.+++..+.++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         293 PALELFLSEKRLQGSLYGSA--NPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             CHHHHhhcCcEEEEEEecCc--CcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            33344456666666544322  22467889999999999876  3667899999999999998887665544

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=4e-35  Score=271.80  Aligned_cols=297  Identities=14%  Similarity=0.166  Sum_probs=239.9

Q ss_pred             CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEE
Q 042784           30 DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVL  109 (356)
Q Consensus        30 ~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~  109 (356)
                      +.+++++.++    |.+++++|+||+.++++|+.|++.+.|...    ...+...++|++|+|+++|++++.+++||+|+
T Consensus        11 ~~~~~~~~~~----p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~----~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv   82 (365)
T cd05279          11 KPLSIEEIEV----APPKAGEVRIKVVATGVCHTDLHVIDGKLP----TPLPVILGHEGAGIVESIGPGVTTLKPGDKVI   82 (365)
T ss_pred             CCcEEEEeec----CCCCCCeEEEEEEEeeecchhHHHhcCCCC----CCCCcccccceeEEEEEeCCCcccCCCCCEEE
Confidence            5688988866    778999999999999999999998886432    12233444589999999999999999999998


Q ss_pred             ec--------------------------------------------------cCCeeeEEeecCCcccccCCCCCCCCcc
Q 042784          110 RA--------------------------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFP  139 (356)
Q Consensus       110 ~~--------------------------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~  139 (356)
                      ..                                                  .|+|++|+.++.+.++++   |++++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~l---P~~~~~~  159 (365)
T cd05279          83 PLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKI---DPDAPLE  159 (365)
T ss_pred             EcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEEC---CCCCCHH
Confidence            31                                                  268999999999888665   9999999


Q ss_pred             ccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecC
Q 042784          140 DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYN  218 (356)
Q Consensus       140 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~  218 (356)
                      + ++.+.+++.+||+++.+.+++++|++|||+| +|++|++++++|+.+|+ .|+++++++++.+.++ ++|+++++++.
T Consensus       160 ~-a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~  236 (365)
T cd05279         160 K-VCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK-QLGATECINPR  236 (365)
T ss_pred             H-hhHhccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCCeecccc
Confidence            8 7889999999999988888999999999997 59999999999999999 5778887999999997 89999888876


Q ss_pred             Chh--hHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcc-cCCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          219 SEM--SFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVN-VHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       219 ~~~--~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~-~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      + .  ++.+.+++++++++|++||++|. ..+..++++++ ++|+++.+|......      ....+...+ .++.++.+
T Consensus       237 ~-~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~------~~~~~~~~~-~~~~~l~g  308 (365)
T cd05279         237 D-QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGT------EATLDPNDL-LTGRTIKG  308 (365)
T ss_pred             c-ccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCC------ceeeCHHHH-hcCCeEEE
Confidence            5 4  67777888777789999999986 68889999999 999999998753110      111223333 56677777


Q ss_pred             EecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      ....++.  ..+.+.++++++.++.+.+  .+.++|+++++.+|++.+.+++. .|+++
T Consensus       309 ~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~~~~~  364 (365)
T cd05279         309 TVFGGWK--SKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGES-IRTIL  364 (365)
T ss_pred             EeccCCc--hHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCc-eeeee
Confidence            6554432  2356788999999998875  47778999999999999887664 36654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4.4e-35  Score=270.28  Aligned_cols=305  Identities=18%  Similarity=0.158  Sum_probs=240.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCC--C----ccCCCccCcee
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDG--L----YFPQFNLNQVI   86 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~--~----~~~~~~~g~~~   86 (356)
                      ||++++..        ++.+++++.+.    |++.+++|+||+.++++|++|+..+.|....  .    ...+++...++
T Consensus         1 mka~~~~~--------~~~~~~~~~~~----p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~   68 (350)
T cd08256           1 MRAVVCHG--------PQDYRLEEVPV----PRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGH   68 (350)
T ss_pred             CeeEEEec--------CCceEEEECCC----CCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCc
Confidence            46777753        24688888755    7799999999999999999999988764210  0    00123333455


Q ss_pred             eeeEEEEEeccCCC--CCCCCCEEEe-------------------------------ccCCeeeEEeecCCcccccCCCC
Q 042784           87 LAFGIARVIRSKDS--KYSDGDIVLR-------------------------------AFLPVAEYSLLPCDLLTRKLDPA  133 (356)
Q Consensus        87 ~~~G~v~~vg~~v~--~~~~Gd~V~~-------------------------------~~g~~a~~~~v~~~~~~~~i~~P  133 (356)
                      |++|+|+.+|++++  ++++||+|+.                               ..|+|++|+.++++..+.++  |
T Consensus        69 e~~G~v~~vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~l--P  146 (350)
T cd08256          69 EFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKV--P  146 (350)
T ss_pred             ceeEEEEEeCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEEC--C
Confidence            99999999999999  8999999983                               24899999999988544455  9


Q ss_pred             CCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC
Q 042784          134 SGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       134 ~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      +++++++ ++.+ .++.|+|+++ +.+++++|++|+|.| +|++|++++++|+.+|+ .|+++++++++...++ ++|++
T Consensus       147 ~~~~~~~-aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~  221 (350)
T cd08256         147 DDIPPED-AILI-EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR-KFGAD  221 (350)
T ss_pred             CCCCHHH-Hhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHH-HcCCc
Confidence            9999988 6666 8999999998 678999999999955 59999999999999998 5778888888888887 89998


Q ss_pred             ceeecCChhhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh-hccc
Q 042784          213 DAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM-IGKE  289 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~  289 (356)
                      .++++.. .++.+.+.++++ .++|++||++|. ..+..++++++++|+++.+|......        ......+ ..++
T Consensus       222 ~v~~~~~-~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--------~~~~~~~~~~~~  292 (350)
T cd08256         222 VVLNPPE-VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPV--------TVDWSIIGDRKE  292 (350)
T ss_pred             EEecCCC-cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCC--------ccChhHhhcccc
Confidence            8888775 677778888764 489999999995 57888999999999999998643211        0111111 3566


Q ss_pred             eEEEEEecccccchHHHHHHHHHHHHHcCCeeee--eeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          290 VKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSK--HVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      +++.++....      ..++++++++.++.+++.  +..+|+++++++|++.+.+++..+|+|+
T Consensus       293 ~~i~~~~~~~------~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         293 LDVLGSHLGP------YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             cEEEEeccCc------hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            7777665432      347788999999999873  6778999999999999999888889874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=4.9e-35  Score=272.19  Aligned_cols=311  Identities=17%  Similarity=0.125  Sum_probs=241.7

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ||+|++..        ++.++++++++    |.+ .++||+|||.++++|++|++...|...    .+++...+++++|+
T Consensus         1 m~~~~~~~--------~~~~~~~~~~~----p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~----~~~p~~~g~e~~G~   64 (375)
T cd08282           1 MKAVVYGG--------PGNVAVEDVPD----PKIEHPTDAIVRITTTAICGSDLHMYRGRTG----AEPGLVLGHEAMGE   64 (375)
T ss_pred             CceEEEec--------CCceeEEeCCC----CCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC----CCCCceeccccEEE
Confidence            46676642        35788888766    564 799999999999999999999887543    22233444599999


Q ss_pred             EEEeccCCCCCCCCCEEEec---------------------------------------cCCeeeEEeecCC--cccccC
Q 042784           92 ARVIRSKDSKYSDGDIVLRA---------------------------------------FLPVAEYSLLPCD--LLTRKL  130 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~---------------------------------------~g~~a~~~~v~~~--~~~~~i  130 (356)
                      |+++|+++..+++||+|+..                                       +|+|++|+.++.+  .++.+ 
T Consensus        65 V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~l-  143 (375)
T cd08282          65 VEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKL-  143 (375)
T ss_pred             EEEeCCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEEC-
Confidence            99999999999999999830                                       2789999999975  56444 


Q ss_pred             CCCCCCCccc--cccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHH
Q 042784          131 DPASGIPFPD--YLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKE  207 (356)
Q Consensus       131 ~~P~~~s~~~--~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~  207 (356)
                        |+++++++  .+++++.++.|||+++ ..+++++|++|+|.|+ |++|++++++|+..|+ +|++++.++++.++++ 
T Consensus       144 --P~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~-g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~-  218 (375)
T cd08282         144 --PDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGA-GPVGLMAAYSAILRGASRVYVVDHVPERLDLAE-  218 (375)
T ss_pred             --CCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-
Confidence              99999983  1688899999999999 6788999999999775 9999999999999998 8999988999999998 


Q ss_pred             HhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh------------hHHHHHHhcccCCEEEEEeccccccccccc
Q 042784          208 EFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK------------MLEAVLNHVNVHARIILCGMISQYNKVWTE  275 (356)
Q Consensus       208 ~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~------------~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  275 (356)
                      ++|+. .+++++ .++.+.+.+++++++|+++||+|..            .+..++++++++|+++.+|...........
T Consensus       219 ~~g~~-~v~~~~-~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~  296 (375)
T cd08282         219 SIGAI-PIDFSD-GDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGD  296 (375)
T ss_pred             HcCCe-EeccCc-ccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCccccccc
Confidence            89984 667765 6677788887767899999999876            388999999999999988865421100000


Q ss_pred             -----ccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcce
Q 042784          276 -----RDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGK  348 (356)
Q Consensus       276 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gk  348 (356)
                           .....+...++.++..+.+...     ..++.+.++++++.++.+.+  .++++|+++++++|++.+.+++ .+|
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k  370 (375)
T cd08282         297 AAAKQGELSFDFGLLWAKGLSFGTGQA-----PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETK  370 (375)
T ss_pred             ccccCccccccHHHHHhcCcEEEEecC-----CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceE
Confidence                 0011233444556665554322     12356788899999999986  3778999999999999999888 889


Q ss_pred             EEEEe
Q 042784          349 VVIQV  353 (356)
Q Consensus       349 vvi~~  353 (356)
                      +|+++
T Consensus       371 vvv~~  375 (375)
T cd08282         371 VVIKP  375 (375)
T ss_pred             EEeCC
Confidence            99863

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.8e-35  Score=270.21  Aligned_cols=290  Identities=17%  Similarity=0.152  Sum_probs=240.1

Q ss_pred             CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEE
Q 042784           30 DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVL  109 (356)
Q Consensus        30 ~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~  109 (356)
                      ..+++.+.++    |++.++||+||+.++++|++|++...|...   ..+++...+++++|+|+.+|++++++++||+|+
T Consensus        10 ~~~~~~~~~~----p~~~~~evlirv~a~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   82 (337)
T cd05283          10 GKLEPFTFER----RPLGPDDVDIKITYCGVCHSDLHTLRNEWG---PTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVG   82 (337)
T ss_pred             CCceEEeccC----CCCCCCeEEEEEEEecccchHHHHhcCCcC---CCCCCcccCcceeeEEEEECCCCcccCCCCEEE
Confidence            7889998866    789999999999999999999999887542   122333344599999999999999999999997


Q ss_pred             e-------------------------------------ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhH
Q 042784          110 R-------------------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAA  152 (356)
Q Consensus       110 ~-------------------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta  152 (356)
                      +                                     ..|+|++|+.++.+.++++   |+++++++ ++.+++.+.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l---p~~~~~~~-aa~l~~~~~ta  158 (337)
T cd05283          83 VGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKI---PEGLDSAA-AAPLLCAGITV  158 (337)
T ss_pred             EecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEEC---CCCCCHHH-hhhhhhHHHHH
Confidence            2                                     1488999999999888555   99999998 78999999999


Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC
Q 042784          153 WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       153 ~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      |+++... .+++|++++|.| .|++|++++++|+..|++|+++++++++.+.++ ++|++.+++..+ .++...    .+
T Consensus       159 ~~~~~~~-~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~-~~~~~~----~~  230 (337)
T cd05283         159 YSPLKRN-GVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL-KLGADEFIATKD-PEAMKK----AA  230 (337)
T ss_pred             HHHHHhc-CCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEecCcc-hhhhhh----cc
Confidence            9999754 589999999977 599999999999999999999999999999997 899988888765 333221    24


Q ss_pred             CCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHH
Q 042784          233 NGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEM  311 (356)
Q Consensus       233 ~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  311 (356)
                      +++|+++||+|.. .+..++++++++|+++.+|.....        ...+...++.+++++.+.....     .+.++.+
T Consensus       231 ~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~  297 (337)
T cd05283         231 GSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEP--------LPVPPFPLIFGRKSVAGSLIGG-----RKETQEM  297 (337)
T ss_pred             CCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCC--------CccCHHHHhcCceEEEEecccC-----HHHHHHH
Confidence            6799999999987 589999999999999999875431        1223445567899998876653     3567888


Q ss_pred             HHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          312 ESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       312 ~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ++++.++++.+.+ ..|+++++++||+.+.+++..||+|++
T Consensus       298 ~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         298 LDFAAEHGIKPWV-EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             HHHHHhCCCccce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            9999999998765 589999999999999999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=6.6e-35  Score=268.57  Aligned_cols=302  Identities=18%  Similarity=0.147  Sum_probs=242.5

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      |++|+++..        +.+++++.++    |.| +++||+||+.++++|+.|.....|.+..  ..+..+|  ++++|+
T Consensus         1 ~~a~~~~~~--------~~~~~~~~~~----p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g--~e~~G~   64 (344)
T cd08284           1 MKAVVFKGP--------GDVRVEEVPI----PQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS--TPGFVLG--HEFVGE   64 (344)
T ss_pred             CeeEEEecC--------CCceEEeccC----CCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCCcccc--cceEEE
Confidence            567877632        5688888866    666 4999999999999999999888764431  2234444  489999


Q ss_pred             EEEeccCCCCCCCCCEEEec---------------------------------cCCeeeEEeecCC--cccccCCCCCCC
Q 042784           92 ARVIRSKDSKYSDGDIVLRA---------------------------------FLPVAEYSLLPCD--LLTRKLDPASGI  136 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~---------------------------------~g~~a~~~~v~~~--~~~~~i~~P~~~  136 (356)
                      |+.+|++++.+++||+|+..                                 .|+|++|+.++.+  .++++   |+++
T Consensus        65 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~---p~~l  141 (344)
T cd08284          65 VVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKL---PDGL  141 (344)
T ss_pred             EEeeCCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEEC---CCCC
Confidence            99999999999999999931                                 3889999999974  66444   9999


Q ss_pred             CccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCcee
Q 042784          137 PFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       137 s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      ++++ +++++.+++|||+++. ..++.+|++|+|+| +|++|++++++|+.+|+ +|++++.++++.++++ ++|+. .+
T Consensus       142 ~~~~-a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~~  216 (344)
T cd08284         142 SDEA-ALLLGDILPTGYFGAK-RAQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPVPERLERAA-ALGAE-PI  216 (344)
T ss_pred             CHHH-hhhhcCchHHHHhhhH-hcCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-HhCCe-EE
Confidence            9998 7899999999999996 47889999999997 59999999999999997 8999988888888888 89975 56


Q ss_pred             ecCChhhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEE
Q 042784          216 NYNSEMSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKME  293 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (356)
                      +++. .++...+.++++ +++|++|||+|+ ..+..++++++++|+++.+|......       ........+.+++++.
T Consensus       217 ~~~~-~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~  288 (344)
T cd08284         217 NFED-AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEE-------FPFPGLDAYNKNLTLR  288 (344)
T ss_pred             ecCC-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCC-------ccccHHHHhhcCcEEE
Confidence            6665 567777887764 589999999996 58889999999999999999765311       1123344567777776


Q ss_pred             EEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          294 GFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ...     ....+.++++++++.++.+.+  .+..++++++++++++.+.+++. +|+|++
T Consensus       289 ~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~  343 (344)
T cd08284         289 FGR-----CPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLD  343 (344)
T ss_pred             Eec-----CCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEec
Confidence            431     123467888999999999876  36678999999999999988877 999985

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=5.2e-35  Score=269.14  Aligned_cols=308  Identities=19%  Similarity=0.210  Sum_probs=244.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++...        +.+.+++.++    |+++++||+||+.++++|+.|+..+.|..  ....+..+|  .+++|+|
T Consensus         1 ~~a~~~~~~--------~~l~~~~~~~----~~l~~~~v~v~v~~~~~n~~d~~~~~~~~--~~~~~~~~g--~~~~G~V   64 (343)
T cd08236           1 MKALVLTGP--------GDLRYEDIPK----PEPGPGEVLVKVKACGICGSDIPRYLGTG--AYHPPLVLG--HEFSGTV   64 (343)
T ss_pred             CeeEEEecC--------CceeEEecCC----CCCCCCeEEEEEEEEEECccchHhhcCCC--CCCCCcccC--cceEEEE
Confidence            578888754        3578887765    67999999999999999999999887643  112334444  4899999


Q ss_pred             EEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|+++..+++||+|+.                             ..|+|++|+.++.+.++.+   |+++++++ +|
T Consensus        65 ~~~g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l---P~~~~~~~-aa  140 (343)
T cd08236          65 EEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKI---PDHVDYEE-AA  140 (343)
T ss_pred             EEECCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEEC---cCCCCHHH-HH
Confidence            999999999999999993                             1489999999999888555   99999988 56


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      .+ ..+++||+++. ..+++++++|+|+| +|.+|.+++++|+.+|++ |+++++++++.+.++ ++|+..++++++ ..
T Consensus       141 ~~-~~~~ta~~~l~-~~~~~~~~~vlI~g-~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~-~~g~~~~~~~~~-~~  215 (343)
T cd08236         141 MI-EPAAVALHAVR-LAGITLGDTVVVIG-AGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR-ELGADDTINPKE-ED  215 (343)
T ss_pred             hc-chHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEecCcc-cc
Confidence            66 67899999996 78899999999997 599999999999999996 999998999999987 899988898876 44


Q ss_pred             HHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc
Q 042784          223 FDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH  300 (356)
Q Consensus       223 ~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (356)
                       .+.+.+..+ .++|++|||+|. ..+..++++++++|+++.+|.....     .......+..++.+++++.++.....
T Consensus       216 -~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (343)
T cd08236         216 -VEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGD-----VTLSEEAFEKILRKELTIQGSWNSYS  289 (343)
T ss_pred             -HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCC-----cccccCCHHHHHhcCcEEEEEeeccc
Confidence             666766664 479999999976 5788999999999999999865431     11111233445677888888765433


Q ss_pred             cchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHc-CCCcceEEE
Q 042784          301 MDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFS-SSNIGKVVI  351 (356)
Q Consensus       301 ~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~-~~~~gkvvi  351 (356)
                      .....+.++++++++.++.+.  +.+...+++++++++++.+.+ +...||+|+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         290 APFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             cccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            223346678889999999875  445678999999999999998 666778874

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.3e-34  Score=265.61  Aligned_cols=312  Identities=26%  Similarity=0.338  Sum_probs=257.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|+++.+     +..+.+++++.+.    |.+.++|++||+.++++|++|+....|........|..+|  +++.|+|
T Consensus         1 ~~a~~~~~~-----~~~~~~~~~~~~~----~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g--~e~~G~v   69 (336)
T cd08276           1 MKAWRLSGG-----GGLDNLKLVEEPV----PEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPL--SDGAGEV   69 (336)
T ss_pred             CeEEEEecc-----CCCcceEEEeccC----CCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccc--cceeEEE
Confidence            678888754     3446788877654    5689999999999999999999988765433222233444  5888999


Q ss_pred             EEeccCCCCCCCCCEEEec-----------------------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchh
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPG  149 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~  149 (356)
                      +.+|++++++++||+|+..                       .|+|++|+.++.+.++.+   |+++++.+ ++.+...+
T Consensus        70 ~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l---p~~~~~~~-a~~~~~~~  145 (336)
T cd08276          70 VAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRA---PDHLSFEE-AATLPCAG  145 (336)
T ss_pred             EEeCCCCcCCCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEEC---CCCCCHHH-hhhhhHHH
Confidence            9999999999999999932                       478999999999887554   99999988 78899999


Q ss_pred             hhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHH
Q 042784          150 FAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       150 ~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~  229 (356)
                      ++||+++...+++++|++|+|+| +|++|++++++++..|++|++++.++++.+.++ ++|.+.++++....++.+.+++
T Consensus       146 ~~a~~~l~~~~~~~~g~~vli~g-~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~  223 (336)
T cd08276         146 LTAWNALFGLGPLKPGDTVLVQG-TGGVSLFALQFAKAAGARVIATSSSDEKLERAK-ALGADHVINYRTTPDWGEEVLK  223 (336)
T ss_pred             HHHHHHHHhhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEcCCcccCHHHHHHH
Confidence            99999998788899999999996 699999999999999999999999999999998 7898888887642457777888


Q ss_pred             HCC-CCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHH
Q 042784          230 YFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFT  308 (356)
Q Consensus       230 ~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (356)
                      .++ +++|.++|+++......++++++++|+++.+|......       ........+.+++++.+.....     .+.+
T Consensus       224 ~~~~~~~d~~i~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~  291 (336)
T cd08276         224 LTGGRGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLSGFE-------APVLLLPLLTKGATLRGIAVGS-----RAQF  291 (336)
T ss_pred             HcCCCCCcEEEECCChHHHHHHHHhhcCCCEEEEEccCCCCc-------cCcCHHHHhhcceEEEEEecCc-----HHHH
Confidence            775 58999999999888899999999999999998765421       1123455678899998877653     3567


Q ss_pred             HHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          309 VEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       309 ~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +++++++.++.+.+.+...+++++++++++.+.+++..+|+|+++
T Consensus       292 ~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  336 (336)
T cd08276         292 EAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIRV  336 (336)
T ss_pred             HHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            888899999988877777899999999999999888889999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=8.6e-35  Score=267.91  Aligned_cols=305  Identities=18%  Similarity=0.167  Sum_probs=243.7

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ||++++.+.        +.+++++.++    |+| .++||+|||.++++|++|+....|..... .++..+|  +|++|+
T Consensus         1 m~a~~~~~~--------~~~~~~~~~~----p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~-~~~~~~g--~e~~G~   65 (345)
T cd08286           1 MKALVYHGP--------GKISWEDRPK----PTIQEPTDAIVKMLKTTICGTDLHILKGDVPTV-TPGRILG--HEGVGV   65 (345)
T ss_pred             CceEEEecC--------CceeEEecCC----CCCCCCCeEEEEEEEeeecchhhHHHcCCCCCC-CCCceec--ccceEE
Confidence            567777643        3588888755    565 79999999999999999999988754321 2233444  589999


Q ss_pred             EEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCC--cccccCCCCCCCCcc
Q 042784           92 ARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCD--LLTRKLDPASGIPFP  139 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~--~~~~~i~~P~~~s~~  139 (356)
                      |+.+|++++++++||+|+..                              .|+|++|+.++.+  .++. +  |++++.+
T Consensus        66 V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~-l--p~~~~~~  142 (345)
T cd08286          66 VEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYK-L--PEGVDEE  142 (345)
T ss_pred             EEEeccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEE-C--CCCCCHH
Confidence            99999999999999999831                              1789999999987  5644 4  9999998


Q ss_pred             ccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCCceeecC
Q 042784          140 DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDDAFNYN  218 (356)
Q Consensus       140 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~~v~~~~  218 (356)
                      + ++.++..++|||.++...+++.+|++|+|+|+ |++|.+++|+|+..| .+|++++.++++...++ ++|++.++++.
T Consensus       143 ~-aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~  219 (345)
T cd08286         143 A-AVMLSDILPTGYECGVLNGKVKPGDTVAIVGA-GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK-KLGATHTVNSA  219 (345)
T ss_pred             H-hhhccchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCceeccc
Confidence            8 78999999999998777788999999999885 999999999999999 69999888888888888 89999899887


Q ss_pred             ChhhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEe
Q 042784          219 SEMSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFM  296 (356)
Q Consensus       219 ~~~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (356)
                      . .++.+.+.++++ +++|++|||+|. ..+..++++++++|+++.+|.....        ...+...++.+++++.+..
T Consensus       220 ~-~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~--------~~~~~~~~~~~~~~~~~~~  290 (345)
T cd08286         220 K-GDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKP--------VDLHLEKLWIKNITITTGL  290 (345)
T ss_pred             c-ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCC--------CCcCHHHHhhcCcEEEeec
Confidence            6 567777777764 589999999986 4788899999999999999864321        1224445577888887643


Q ss_pred             cccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCC--CcceEEEEe
Q 042784          297 IGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSS--NIGKVVIQV  353 (356)
Q Consensus       297 ~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~--~~gkvvi~~  353 (356)
                      ..      .+.+++++++++++.+.+  .++++|+++++++|++.+....  ...|+||++
T Consensus       291 ~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         291 VD------TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             Cc------hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            22      145778889999998875  3567899999999999998764  344999864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=7.6e-35  Score=267.40  Aligned_cols=308  Identities=22%  Similarity=0.267  Sum_probs=247.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++.++.     .+. +.+.+.+    .|.+.+++|+||+.++++|+.|.....|......  +++...+.+++|+|
T Consensus         1 ~~~~~~~~~~-----~~~-~~~~~~~----~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~--~~~~~~g~~~~G~v   68 (338)
T cd08254           1 MKAWRFHKGS-----KGL-LVLEEVP----VPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLT--KLPLTLGHEIAGTV   68 (338)
T ss_pred             CeeEEEecCC-----CCc-eEEeccC----CCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccC--CCCEeccccccEEE
Confidence            5777777653     223 5666553    3788999999999999999999998887543222  22333445899999


Q ss_pred             EEeccCCCCCCCCCEEEe-------------------c----------cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR-------------------A----------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~-------------------~----------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|++++.+++||+|+.                   +          .|+|++|+.++.+.++.+   |++++.++ ++
T Consensus        69 ~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l---p~~~~~~~-a~  144 (338)
T cd08254          69 VEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPV---PDGVPFAQ-AA  144 (338)
T ss_pred             EEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEEC---CCCCCHHH-hh
Confidence            999999999999999982                   0          489999999999887555   99999998 78


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      +++.++.|||+++....+++++++|||.| +|++|++++++|+..|++|++++.++++.+.++ ++|.+.++++.+ ..+
T Consensus       145 ~~~~~~~ta~~~l~~~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~-~~g~~~~~~~~~-~~~  221 (338)
T cd08254         145 VATDAVLTPYHAVVRAGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK-ELGADEVLNSLD-DSP  221 (338)
T ss_pred             hhcchHHHHHHHHHhccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhCCCEEEcCCC-cCH
Confidence            99999999999998888899999999986 599999999999999999999999999999997 899988888765 455


Q ss_pred             HHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD  302 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
                      .+.++...++++|+++||+|. ..+..++++++++|+++.+|.....        ...+...++.++.++.+....    
T Consensus       222 ~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~----  289 (338)
T cd08254         222 KDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDK--------LTVDLSDLIARELRIIGSFGG----  289 (338)
T ss_pred             HHHHHHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCC--------CccCHHHHhhCccEEEEeccC----
Confidence            555633335689999999985 5888999999999999999875431        112334556777777765432    


Q ss_pred             hHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          303 RFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       303 ~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                       ..+.++.++++++++.+.+. ...++++++.++++.+.+++..||+|+++
T Consensus       290 -~~~~~~~~~~ll~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         290 -TPEDLPEVLDLIAKGKLDPQ-VETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             -CHHHHHHHHHHHHcCCCccc-ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence             23678889999999999876 56899999999999999999999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=8.1e-35  Score=267.86  Aligned_cols=304  Identities=19%  Similarity=0.161  Sum_probs=242.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|+++..        +.+.+++.++    |.+.+++|+|||.++++|+.|+....|... ....+..+|  ++++|+|
T Consensus         1 ~~~~~~~~~--------~~~~~~~~~~----~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~-~~~~~~~~g--~~~~G~V   65 (343)
T cd08235           1 MKAAVLHGP--------NDVRLEEVPV----PEPGPGEVLVKVRACGICGTDVKKIRGGHT-DLKPPRILG--HEIAGEI   65 (343)
T ss_pred             CeEEEEecC--------CceEEEEccC----CCCCCCeEEEEEEEeeeccccHHHHcCCCc-cCCCCcccc--cceEEEE
Confidence            478888753        3578887755    668999999999999999999998876432 112233344  5899999


Q ss_pred             EEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCc-----ccccCCCCCCCCc
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDL-----LTRKLDPASGIPF  138 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~-----~~~~i~~P~~~s~  138 (356)
                      +.+|++++.+++||+|+..                             .|+|++|+.++.+.     ++++   |+++++
T Consensus        66 ~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~l---P~~~~~  142 (343)
T cd08235          66 VEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKL---PDNVSF  142 (343)
T ss_pred             EeeCCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEEC---CCCCCH
Confidence            9999999999999999931                             38999999999987     7554   999999


Q ss_pred             cccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeec
Q 042784          139 PDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNY  217 (356)
Q Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~  217 (356)
                      ++ ++.+ ..+.+||+++. ..++++|++|+|+| +|++|.+++++|+..|++ |++++.++++.+.++ ++|.++++++
T Consensus       143 ~~-aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~-~~g~~~~~~~  217 (343)
T cd08235         143 EE-AALV-EPLACCINAQR-KAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK-KLGADYTIDA  217 (343)
T ss_pred             HH-HHhh-hHHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCcEEecC
Confidence            98 5554 78899999996 45899999999997 599999999999999998 999988999999997 8999888888


Q ss_pred             CChhhHHHHHHHHCC-CCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEE
Q 042784          218 NSEMSFDAALTKYFP-NGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGF  295 (356)
Q Consensus       218 ~~~~~~~~~i~~~~~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      ++ .++.+.++++++ +++|+++||+++. .+..++++++++|+++.+|......      ....+......+++.+.+.
T Consensus       218 ~~-~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~------~~~~~~~~~~~~~~~l~~~  290 (343)
T cd08235         218 AE-EDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGS------TVNIDPNLIHYREITITGS  290 (343)
T ss_pred             Cc-cCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCC------CcccCHHHHhhCceEEEEE
Confidence            87 678778887764 5799999999964 8889999999999999988644311      1111223445566666654


Q ss_pred             ecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          296 MIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ...     ..+.+++++++++++.+.+  .+..+|+++++.++++.+.+++ .+|+|+.
T Consensus       291 ~~~-----~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~  343 (343)
T cd08235         291 YAA-----SPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT  343 (343)
T ss_pred             ecC-----ChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence            432     2356788899999999863  4566899999999999999988 8899873

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=7e-35  Score=268.23  Aligned_cols=295  Identities=16%  Similarity=0.166  Sum_probs=233.7

Q ss_pred             CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEE
Q 042784           30 DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVL  109 (356)
Q Consensus        30 ~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~  109 (356)
                      ..+++++.+.    |.+.++||+|||.++++|+.|.+...+...+.....++...+++++|+|+.+|+++.++++||+|+
T Consensus         8 ~~~~~~~~~~----~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   83 (343)
T cd05285           8 GDLRLEERPI----PEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVA   83 (343)
T ss_pred             CceeEEECCC----CCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEE
Confidence            6788888755    678999999999999999999987643222222222333344589999999999999999999998


Q ss_pred             e------------------------------ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHh
Q 042784          110 R------------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVL  159 (356)
Q Consensus       110 ~------------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~  159 (356)
                      .                              ..|+|++|++++++.++++   |+++++++ ++.+ .++.+|++++ ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l---P~~~~~~~-aa~~-~~~~~a~~~~-~~  157 (343)
T cd05285          84 IEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKL---PDNVSLEE-GALV-EPLSVGVHAC-RR  157 (343)
T ss_pred             EccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEEC---cCCCCHHH-hhhh-hHHHHHHHHH-Hh
Confidence            3                              1489999999999887555   99999998 5555 6888999997 68


Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChhh---HHHHHHHHCC-CC
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS---FDAALTKYFP-NG  234 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~---~~~~i~~~~~-~~  234 (356)
                      +++++|++|+|+|+ |++|++++++|+.+|++ |+++++++++.+.++ ++|++.++++++ .+   +.+.+.+.++ ++
T Consensus       158 ~~~~~g~~vlI~g~-g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~-~~~~~~~~~~~~~~~~~~  234 (343)
T cd05285         158 AGVRPGDTVLVFGA-GPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK-ELGATHTVNVRT-EDTPESAEKIAELLGGKG  234 (343)
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCcEEecccc-ccchhHHHHHHHHhCCCC
Confidence            99999999999875 99999999999999996 999988899999998 899999998875 34   3677777664 57


Q ss_pred             ceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHH
Q 042784          235 IDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMES  313 (356)
Q Consensus       235 ~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (356)
                      +|++|||+|.. .+...+++++++|+++.+|.....        ...+......+++.+.+.....      +.++++++
T Consensus       235 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  300 (343)
T cd05285         235 PDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPE--------VTLPLSAASLREIDIRGVFRYA------NTYPTAIE  300 (343)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCC--------CccCHHHHhhCCcEEEEeccCh------HHHHHHHH
Confidence            99999999986 889999999999999999864331        1112224455666666553221      56788899


Q ss_pred             HHHcCCee--eeeeEEeChhhHHHHHHHHHcCC-CcceEEE
Q 042784          314 YIKEGKIR--SKHVIYYGVESFLESLGSLFSSS-NIGKVVI  351 (356)
Q Consensus       314 ~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi  351 (356)
                      ++.++.+.  +.+..+|+++++.+|++.+.+++ ..+|++|
T Consensus       301 ~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~  341 (343)
T cd05285         301 LLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI  341 (343)
T ss_pred             HHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence            99999865  44667899999999999998774 5689988

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.7e-34  Score=264.38  Aligned_cols=303  Identities=23%  Similarity=0.221  Sum_probs=244.6

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |+++++.+.       ++.+.+++.+.    |.+.+++|+|+++++++|+.|++...|.... ...+..+|  ++++|+|
T Consensus         1 m~a~~~~~~-------~~~~~~~~~~~----p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g--~e~~G~v   66 (332)
T cd08259           1 MKAAILHKP-------NKPLQIEEVPD----PEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILG--HEIVGTV   66 (332)
T ss_pred             CeEEEEecC-------CCceEEEEccC----CCCCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeecc--ccceEEE
Confidence            567777742       26788887754    7789999999999999999999988864332 12233444  5899999


Q ss_pred             EEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|++++.+++||+|+..                             .|+|++|+.++.+.++.+   |+++++++ ++
T Consensus        67 ~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i---p~~~~~~~-~~  142 (332)
T cd08259          67 EEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKL---PDNVSDES-AA  142 (332)
T ss_pred             EEECCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEEC---CCCCCHHH-Hh
Confidence            9999999999999999932                             478999999999887554   99999998 78


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      .+++++.+||+++.. +++.++++++|+|++|++|++++++++..|++|+++++++++.+.++ ++|...+++..  . +
T Consensus       143 ~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~--~-~  217 (332)
T cd08259         143 LAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILK-ELGADYVIDGS--K-F  217 (332)
T ss_pred             hhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HcCCcEEEecH--H-H
Confidence            999999999999986 88999999999999999999999999999999999998888988887 78887777654  2 6


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccch
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDR  303 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (356)
                      .+.+.+..  ++|++++|+|......++++++++|+++.+|......      . .........++..+.+...     .
T Consensus       218 ~~~~~~~~--~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~g~~~~~~------~-~~~~~~~~~~~~~~~~~~~-----~  283 (332)
T cd08259         218 SEDVKKLG--GADVVIELVGSPTIEESLRSLNKGGRLVLIGNVTPDP------A-PLRPGLLILKEIRIIGSIS-----A  283 (332)
T ss_pred             HHHHHhcc--CCCEEEECCChHHHHHHHHHhhcCCEEEEEcCCCCCC------c-CCCHHHHHhCCcEEEEecC-----C
Confidence            66666553  6999999999988899999999999999998754311      0 0111122245666655431     1


Q ss_pred             HHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          304 FADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       304 ~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ....++++++++.++.+++.++.+|+++++++|++.+.+++..||+|++
T Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         284 TKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             CHHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence            2466788999999999988888899999999999999999888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=1.8e-34  Score=267.47  Aligned_cols=297  Identities=18%  Similarity=0.186  Sum_probs=230.1

Q ss_pred             CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEE
Q 042784           30 DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVL  109 (356)
Q Consensus        30 ~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~  109 (356)
                      +.+++++.+.    |.+.++||+||+.++++|++|.+...|...+.+...++...++|++|+|+++|+++.+|++||+|+
T Consensus        27 ~~l~~~~~~~----p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~  102 (364)
T PLN02702         27 NTLKIQPFKL----PPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVA  102 (364)
T ss_pred             CceEEEeccC----CCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEE
Confidence            5678877654    678999999999999999999998876332322222333444599999999999999999999998


Q ss_pred             ec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHh
Q 042784          110 RA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVL  159 (356)
Q Consensus       110 ~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~  159 (356)
                      ..                              .|+|++|+.++.+.++++   |+++++++ ++ +..++.++++++ ..
T Consensus       103 ~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~---P~~l~~~~-aa-~~~~~~~a~~~~-~~  176 (364)
T PLN02702        103 LEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKL---PENVSLEE-GA-MCEPLSVGVHAC-RR  176 (364)
T ss_pred             EcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEEC---CCCCCHHH-Hh-hhhHHHHHHHHH-Hh
Confidence            31                              489999999999887554   99999988 44 334555688887 57


Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCC-hhhHHHHHHHH---CCCC
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNS-EMSFDAALTKY---FPNG  234 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~-~~~~~~~i~~~---~~~~  234 (356)
                      .++.+|++|+|+| +|++|++++++|+..|+ .|++++.++++.+.++ ++|++.++++.. ..++.+.+.++   ++++
T Consensus       177 ~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (364)
T PLN02702        177 ANIGPETNVLVMG-AGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK-QLGADEIVLVSTNIEDVESEVEEIQKAMGGG  254 (364)
T ss_pred             cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEecCcccccHHHHHHHHhhhcCCC
Confidence            8899999999997 59999999999999999 5788888888888888 899988877642 14566666554   3457


Q ss_pred             ceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHH
Q 042784          235 IDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMES  313 (356)
Q Consensus       235 ~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (356)
                      +|++|||+|. ..+..++++++++|+++.+|.....        ..........+++++.++....      ..++.+++
T Consensus       255 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~  320 (364)
T PLN02702        255 IDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNE--------MTVPLTPAAAREVDVVGVFRYR------NTWPLCLE  320 (364)
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCC--------CcccHHHHHhCccEEEEeccCh------HHHHHHHH
Confidence            9999999994 6889999999999999999865321        1112334566778887765321      35678899


Q ss_pred             HHHcCCee--eeeeEEeCh--hhHHHHHHHHHcCCCcceEEEE
Q 042784          314 YIKEGKIR--SKHVIYYGV--ESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       314 ~~~~g~i~--~~~~~~~~~--~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      +++++.+.  +.++++|++  +++++|++.+.+++..+|+|++
T Consensus       321 ~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        321 FLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             HHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence            99999875  446667555  8999999999988888999985

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=100.00  E-value=2.8e-34  Score=261.28  Aligned_cols=315  Identities=23%  Similarity=0.302  Sum_probs=254.0

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++...     +.++.+++.+.+.    |.+.+++|+||+.++++|+.|+....|........|..+|  ++++|+|
T Consensus         1 ~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g--~e~~G~v   69 (323)
T cd05276           1 MKAIVIKEP-----GGPEVLELGEVPK----PAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILG--LEVAGVV   69 (323)
T ss_pred             CeEEEEecC-----CCcccceEEecCC----CCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCccc--ceeEEEE
Confidence            577777653     3456788877654    5688999999999999999999888764332222233444  5899999


Q ss_pred             EEeccCCCCCCCCCEEEec--cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784           93 RVIRSKDSKYSDGDIVLRA--FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      +.+|+++..+++||+|+..  .|+|++|+.++.+.++..   |+++++++ +++++..+.++++++.+.+++.++++|+|
T Consensus        70 ~~vg~~~~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~---p~~~~~~~-~~~l~~~~~~a~~~~~~~~~~~~~~~vlv  145 (323)
T cd05276          70 VAVGPGVTGWKVGDRVCALLAGGGYAEYVVVPAGQLLPV---PEGLSLVE-AAALPEVFFTAWQNLFQLGGLKAGETVLI  145 (323)
T ss_pred             EeeCCCCCCCCCCCEEEEecCCCceeEEEEcCHHHhccC---CCCCCHHH-HhhchhHHHHHHHHHHHhcCCCCCCEEEE
Confidence            9999999999999999931  289999999999887554   99999988 78999999999999988888999999999


Q ss_pred             EcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCchhhHHH
Q 042784          171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKMLEA  249 (356)
Q Consensus       171 ~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~~~~  249 (356)
                      +|++|++|++++++++..|++|+++++++++.+.++ .+|++.++++.. .++.+.+.+.. ++++|+++|++|+..+..
T Consensus       146 ~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~  223 (323)
T cd05276         146 HGGASGVGTAAIQLAKALGARVIATAGSEEKLEACR-ALGADVAINYRT-EDFAEEVKEATGGRGVDVILDMVGGDYLAR  223 (323)
T ss_pred             EcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEeCCc-hhHHHHHHHHhCCCCeEEEEECCchHHHHH
Confidence            999999999999999999999999998989999997 899888888766 56777777765 458999999999988888


Q ss_pred             HHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-----chHHHHHHHHHHHHHcCCeeeee
Q 042784          250 VLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-----DRFADFTVEMESYIKEGKIRSKH  324 (356)
Q Consensus       250 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~g~i~~~~  324 (356)
                      ++++++++|+++.+|......       .......++.+++++.+.......     ......+.++++++.++.+.+..
T Consensus       224 ~~~~~~~~g~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (323)
T cd05276         224 NLRALAPDGRLVLIGLLGGAK-------AELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPVI  296 (323)
T ss_pred             HHHhhccCCEEEEEecCCCCC-------CCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCCc
Confidence            999999999999998754311       112333345688888887655431     12235577888999999998777


Q ss_pred             eEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          325 VIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       325 ~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      +..|++++++++++.+.++...||+|+
T Consensus       297 ~~~~~~~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         297 DKVFPLEEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             ceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            789999999999999998888888874

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=100.00  E-value=3.3e-34  Score=261.17  Aligned_cols=316  Identities=22%  Similarity=0.312  Sum_probs=255.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++.+...     +.++.+.+.+.+.    |.+.+++|+|++.++++|+.|.....|........|..+|  ++++|+|
T Consensus         1 ~~~~~~~~~-----~~~~~~~~~~~~~----~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g--~e~~G~v   69 (325)
T cd08253           1 MRAIRYHEF-----GAPDVLRLGDLPV----PTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPG--SDGAGVV   69 (325)
T ss_pred             CceEEEccc-----CCcccceeeecCC----CCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecc--cceEEEE
Confidence            456666643     2345688877744    7789999999999999999999888764433223344445  4889999


Q ss_pred             EEeccCCCCCCCCCEEEec-------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCC
Q 042784           93 RVIRSKDSKYSDGDIVLRA-------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSG  165 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g  165 (356)
                      +.+|+++.++++||+|+..       .|++++|+.++.+.++..   |+++++++ ++.+++++.+||+++...+++.+|
T Consensus        70 ~~~g~~~~~~~~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~i---p~~~~~~~-aa~~~~~~~~a~~~l~~~~~~~~g  145 (325)
T cd08253          70 EAVGEGVDGLKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPL---PDGVSFEQ-GAALGIPALTAYRALFHRAGAKAG  145 (325)
T ss_pred             EeeCCCCCCCCCCCEEEEeccccCCCCcceeeEEEecHHHcEeC---CCCCCHHH-HhhhhhHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999932       589999999999877554   99999998 789999999999999887899999


Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCch
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGG  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~  244 (356)
                      ++|+|+|++|++|++++++++..|++|+++++++++.+.++ ++|++.++++.. .++.+.+.+.+ ++++|+++||+|.
T Consensus       146 ~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~  223 (325)
T cd08253         146 ETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QAGADAVFNYRA-EDLADRILAATAGQGVDVIIEVLAN  223 (325)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCC-cCHHHHHHHHcCCCceEEEEECCch
Confidence            99999999999999999999999999999999999999997 799988888766 56777777766 4589999999999


Q ss_pred             hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-chHHHHHHHHHHHHHcCCeeee
Q 042784          245 KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEGKIRSK  323 (356)
Q Consensus       245 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~i~~~  323 (356)
                      ......+++++++|+++.+|.....        .......++.++.++.+....... ....+.++.+.+++.++.+++.
T Consensus       224 ~~~~~~~~~l~~~g~~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  295 (325)
T cd08253         224 VNLAKDLDVLAPGGRIVVYGSGGLR--------GTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPV  295 (325)
T ss_pred             HHHHHHHHhhCCCCEEEEEeecCCc--------CCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCc
Confidence            8888899999999999999875310        111223345677777766544322 2344667888889999999887


Q ss_pred             eeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          324 HVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       324 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ++.+|++++++++++.+.++...||+++++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         296 IAREYPLEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             cccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            778999999999999999988899999863

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=100.00  E-value=4.5e-34  Score=260.81  Aligned_cols=312  Identities=19%  Similarity=0.241  Sum_probs=245.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++..+     ++++.+++++.+.    |.++++||+||+.++++|+.|.....|........+..+|  ++++|+|
T Consensus         1 ~~a~~~~~~-----~~~~~~~~~~~~~----p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g--~e~~G~V   69 (324)
T cd08288           1 FKALVLEKD-----DGGTSAELRELDE----SDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPG--IDLAGTV   69 (324)
T ss_pred             CeeEEEecc-----CCCcceEEEECCC----CCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccc--cceEEEE
Confidence            578888854     3346889998866    7789999999999999999999888764321112234444  4888999


Q ss_pred             EEeccCCCCCCCCCEEEec--------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHH---HhCC
Q 042784           93 RVIRSKDSKYSDGDIVLRA--------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIE---VLGQ  161 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~---~~~~  161 (356)
                      +.  ++++.+++||+|+..        .|+|++|+.++.+.++.+   |+++++++ ++.++..+++|+.++.   ....
T Consensus        70 ~~--~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~l---p~~~~~~~-~~~~~~~~~ta~~~~~~~~~~~~  143 (324)
T cd08288          70 VE--SSSPRFKPGDRVVLTGWGVGERHWGGYAQRARVKADWLVPL---PEGLSARQ-AMAIGTAGFTAMLCVMALEDHGV  143 (324)
T ss_pred             Ee--CCCCCCCCCCEEEECCccCCCCCCCcceeEEEEchHHeeeC---CCCCCHHH-HhhhhhHHHHHHHHHHHHhhcCc
Confidence            88  777889999999931        589999999999887554   99999998 7899999999987764   2333


Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .+++++|+|+|++|++|.+++++|+.+|++|++++.++++.+.++ ++|+++++++++   +...++.++++++|.++|+
T Consensus       144 ~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~d~  219 (324)
T cd08288         144 TPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLR-SLGASEIIDRAE---LSEPGRPLQKERWAGAVDT  219 (324)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hcCCCEEEEcch---hhHhhhhhccCcccEEEEC
Confidence            336789999999999999999999999999999998999999997 899998898864   3335566665579999999


Q ss_pred             CchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-chHHHHHHHHHHHHHcCCe
Q 042784          242 VGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       242 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~i  320 (356)
                      +++..+..++..++.+|+++.+|......       ...+...++.+++++.+....... ....+.++.+.+++.++.+
T Consensus       220 ~~~~~~~~~~~~~~~~g~~~~~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (324)
T cd08288         220 VGGHTLANVLAQTRYGGAVAACGLAGGAD-------LPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALL  292 (324)
T ss_pred             CcHHHHHHHHHHhcCCCEEEEEEecCCCC-------CCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCc
Confidence            99877778888999999999998753210       112333445788888887543221 2345678888889999988


Q ss_pred             eeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          321 RSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       321 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      .+ +...++++++++|++.+.+++..+|+|+++
T Consensus       293 ~~-i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         293 EA-LTREIPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             cc-cceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            76 467899999999999999999999999864

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=9.4e-34  Score=260.20  Aligned_cols=312  Identities=21%  Similarity=0.263  Sum_probs=252.8

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++...     +.++.+++.+.+.    |.+.+++|+||+.++++|+.|++...|........+..+|+  |++|+|
T Consensus         1 ~~a~~~~~~-----~~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~--e~~G~v   69 (342)
T cd08266           1 MKAVVIRGH-----GGPEVLEYGDLPE----PEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGS--DGAGVV   69 (342)
T ss_pred             CeEEEEecC-----CCccceeEeecCC----CCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeeccc--ceEEEE
Confidence            467766632     3456788877755    56889999999999999999999887643222222344554  899999


Q ss_pred             EEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|+++..+++||+|+..                             .|++++|+.++.+.++.+   |+++++++ ++
T Consensus        70 ~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~---p~~~~~~~-a~  145 (342)
T cd08266          70 EAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPI---PDNLSFEE-AA  145 (342)
T ss_pred             EEeCCCCCCCCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeC---CCCCCHHH-HH
Confidence            9999999999999999932                             378999999999887554   99999988 78


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      .++.++.+|++++.+..++.++++++|+|+++++|++++++++..|++|+++++++++.+.++ .++...+++..+ .++
T Consensus       146 ~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~  223 (342)
T cd08266         146 AAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-ELGADYVIDYRK-EDF  223 (342)
T ss_pred             hhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCeEEecCC-hHH
Confidence            889999999999887888999999999999899999999999999999999999999999887 788877777665 566


Q ss_pred             HHHHHHHC-CCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc
Q 042784          224 DAALTKYF-PNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD  302 (356)
Q Consensus       224 ~~~i~~~~-~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
                      .+.+.+.+ ++++|++++++|...+..++++++++|+++.+|......       ........+.+++++.+.....   
T Consensus       224 ~~~~~~~~~~~~~d~~i~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---  293 (342)
T cd08266         224 VREVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGYE-------APIDLRHVFWRQLSILGSTMGT---  293 (342)
T ss_pred             HHHHHHHhCCCCCcEEEECCcHHHHHHHHHHhhcCCEEEEEecCCCCC-------CCcCHHHHhhcceEEEEEecCC---
Confidence            66676665 458999999999988999999999999999998654311       1122334467788887765543   


Q ss_pred             hHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          303 RFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       303 ~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                        ...+.++++++.++.+.+.++..|+++++++|++.+.++...+|+|+++
T Consensus       294 --~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         294 --KAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             --HHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence              2467888999999999888888999999999999999888889999863

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4.9e-34  Score=262.45  Aligned_cols=296  Identities=17%  Similarity=0.141  Sum_probs=230.6

Q ss_pred             CeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCC--------CCccCCCccCceeeeeEEEEEeccCCCC-
Q 042784           31 HLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTND--------GLYFPQFNLNQVILAFGIARVIRSKDSK-  101 (356)
Q Consensus        31 ~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~--------~~~~~~~~~g~~~~~~G~v~~vg~~v~~-  101 (356)
                      .+++++.+.    |+++++||+|||.++++|+.|++...|...        ......++...+++++|+|+++|++++. 
T Consensus        10 ~~~~~~~~~----p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   85 (341)
T cd08262          10 PLVVRDVPD----PEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTERK   85 (341)
T ss_pred             ceEEEecCC----CCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeCCCCcCC
Confidence            688887755    789999999999999999999998876211        0111223334456999999999999987 


Q ss_pred             CCCCCEEEe-------------------ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCC
Q 042784          102 YSDGDIVLR-------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQP  162 (356)
Q Consensus       102 ~~~Gd~V~~-------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~  162 (356)
                      +++||+|+.                   ..|+|++|+.++.+.+..+   |+++++++ + +++.++++||+++ ..+++
T Consensus        86 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l---P~~~s~~~-a-~~~~~~~~a~~~~-~~~~~  159 (341)
T cd08262          86 LKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRV---PDGLSMED-A-ALTEPLAVGLHAV-RRARL  159 (341)
T ss_pred             CCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEEC---CCCCCHHH-h-hhhhhHHHHHHHH-HhcCC
Confidence            999999993                   2489999999999887555   99999987 4 4778899999996 67899


Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChh---hHHHHHHHHC-CCCceE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEM---SFDAALTKYF-PNGIDV  237 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~---~~~~~i~~~~-~~~~d~  237 (356)
                      ++|++|+|+|+ |++|.+++|+|+.+|++ +++++.++++.+.++ ++|++++++++...   .+. .+.+.. ++++|+
T Consensus       160 ~~g~~VlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~~d~  236 (341)
T cd08262         160 TPGEVALVIGC-GPIGLAVIAALKARGVGPIVASDFSPERRALAL-AMGADIVVDPAADSPFAAWA-AELARAGGPKPAV  236 (341)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCcEEEcCCCcCHHHHHH-HHHHHhCCCCCCE
Confidence            99999999975 99999999999999995 777777888999888 89998888876521   222 344444 458999


Q ss_pred             EEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHH
Q 042784          238 YLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIK  316 (356)
Q Consensus       238 vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (356)
                      +||++|+ ..+..++++++++|+++.+|......     .  ... ...+.+++++......     ..+.++++++++.
T Consensus       237 vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~-----~--~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  303 (341)
T cd08262         237 IFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESD-----N--IEP-ALAIRKELTLQFSLGY-----TPEEFADALDALA  303 (341)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEECCCCCCC-----c--cCH-HHHhhcceEEEEEecc-----cHHHHHHHHHHHH
Confidence            9999998 47888999999999999998763311     0  111 1123466666543321     2346788999999


Q ss_pred             cCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          317 EGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       317 ~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ++.+.+  .+.+++++++++++++.+.+++..||+|++
T Consensus       304 ~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         304 EGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             cCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            999875  346789999999999999999999999974

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=1.4e-33  Score=256.38  Aligned_cols=306  Identities=22%  Similarity=0.258  Sum_probs=249.3

Q ss_pred             CCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCC
Q 042784           27 PTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGD  106 (356)
Q Consensus        27 ~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd  106 (356)
                      +.+..+.+.+.+.    |.+.++||+|||.++++|+.|.....|....  ..+..+|+  ++.|+|+.+|+++.++++||
T Consensus         9 ~~~~~~~~~~~~~----~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~--e~~G~v~~~g~~~~~~~~G~   80 (320)
T cd05286           9 GGPEVLEYEDVPV----PEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGV--EGAGVVEAVGPGVTGFKVGD   80 (320)
T ss_pred             CCccceEEeecCC----CCCCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCc--ceeEEEEEECCCCCCCCCCC
Confidence            3445677777644    5688999999999999999999888764322  22334554  88899999999999999999


Q ss_pred             EEEec--cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHH
Q 042784          107 IVLRA--FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQL  184 (356)
Q Consensus       107 ~V~~~--~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~l  184 (356)
                      +|+..  .|++++|+.++.+.+++.   |+++++++ +++++..++++++++...+++.+|++|+|+|++|++|++++++
T Consensus        81 ~V~~~~~~g~~~~~~~~~~~~~~~~---p~~~~~~~-~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~  156 (320)
T cd05286          81 RVAYAGPPGAYAEYRVVPASRLVKL---PDGISDET-AAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQW  156 (320)
T ss_pred             EEEEecCCCceeEEEEecHHHceeC---CCCCCHHH-HhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHH
Confidence            99932  589999999999887555   99999988 7889999999999998888999999999999999999999999


Q ss_pred             HHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCchhhHHHHHHhcccCCEEEEE
Q 042784          185 AKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       185 a~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~  263 (356)
                      ++.+|++|++++.++++.+.++ ++|++.+++..+ .++.+.+.+.+ ++++|.+++|+++.....++++++++|+++.+
T Consensus       157 a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~  234 (320)
T cd05286         157 AKALGATVIGTVSSEEKAELAR-AAGADHVINYRD-EDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLVSF  234 (320)
T ss_pred             HHHcCCEEEEEcCCHHHHHHHH-HCCCCEEEeCCc-hhHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhhccCcEEEEE
Confidence            9999999999999999999997 899988887765 67777788776 45899999999988889999999999999999


Q ss_pred             ecccccccccccccchhhhhhhhccceEEEEEeccccc---chHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHH
Q 042784          264 GMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM---DRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSL  340 (356)
Q Consensus       264 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~  340 (356)
                      |......       ...+...+..+++++.......+.   ....+.++++++++.++.+.+.++..|++++++++++.+
T Consensus       235 g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~  307 (320)
T cd05286         235 GNASGPV-------PPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDL  307 (320)
T ss_pred             ecCCCCC-------CccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHHHHHH
Confidence            8754310       111223333778888765543322   233456778899999999887777789999999999999


Q ss_pred             HcCCCcceEEEEe
Q 042784          341 FSSSNIGKVVIQV  353 (356)
Q Consensus       341 ~~~~~~gkvvi~~  353 (356)
                      .++...+|+|+++
T Consensus       308 ~~~~~~~~vv~~~  320 (320)
T cd05286         308 ESRKTTGKLLLIP  320 (320)
T ss_pred             HcCCCCceEEEeC
Confidence            9988889999863

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=100.00  E-value=8.2e-34  Score=260.42  Aligned_cols=314  Identities=19%  Similarity=0.191  Sum_probs=245.4

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |+++++++.+  +...++.+.+++++.    |.+.+++|+||+.++++|++|+....|... ....+..+|  +++.|+|
T Consensus         1 ~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~-~~~~~~~~g--~e~~G~v   71 (336)
T cd08252           1 MKAIGFTQPL--PITDPDSLIDIELPK----PVPGGRDLLVRVEAVSVNPVDTKVRAGGAP-VPGQPKILG--WDASGVV   71 (336)
T ss_pred             CceEEecCCC--CCCcccceeEccCCC----CCCCCCEEEEEEEEEEcCHHHHHHHcCCCC-CCCCCcccc--cceEEEE
Confidence            4567777542  101122466666644    678999999999999999999988776432 112333445  4889999


Q ss_pred             EEeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCC---
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKS---  164 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~---  164 (356)
                      +.+|+++..+++||+|+..     .|+|++|+.++.+.+...   |+++++++ ++.+++.+.+||+++.+.+++.+   
T Consensus        72 ~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~i---p~~~~~~~-~~~~~~~~~ta~~~l~~~~~~~~~~~  147 (336)
T cd08252          72 EAVGSEVTLFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHK---PKSLSFAE-AAALPLTSLTAWEALFDRLGISEDAE  147 (336)
T ss_pred             EEcCCCCCCCCCCCEEEEcCCCCCCccceEEEEEchHHeeeC---CCCCCHHH-hhhhhhHHHHHHHHHHHhcCCCCCcC
Confidence            9999999999999999932     289999999999887554   99999998 78999999999999877788887   


Q ss_pred             --CCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          165 --GSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       165 --g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                        |++|+|+|++|++|++++++|+.+| ++|++++.++++.+.++ ++|++.++++..  ++.+.++...++++|++|||
T Consensus       148 ~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~--~~~~~i~~~~~~~~d~vl~~  224 (336)
T cd08252         148 NEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVK-ELGADHVINHHQ--DLAEQLEALGIEPVDYIFCL  224 (336)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHH-hcCCcEEEeCCc--cHHHHHHhhCCCCCCEEEEc
Confidence              9999999999999999999999999 89999998999999997 899988888763  56666665545689999999


Q ss_pred             Cch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc---c----chHHHHHHHHHH
Q 042784          242 VGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH---M----DRFADFTVEMES  313 (356)
Q Consensus       242 ~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~l~~~~~  313 (356)
                      +|+ ..+..++++++++|+++.+|....          ..+...++.+++++.+......   .    ......++++++
T Consensus       225 ~~~~~~~~~~~~~l~~~g~~v~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (336)
T cd08252         225 TDTDQHWDAMAELIAPQGHICLIVDPQE----------PLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVAD  294 (336)
T ss_pred             cCcHHHHHHHHHHhcCCCEEEEecCCCC----------cccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHH
Confidence            995 688999999999999999986421          1122233467777776544321   1    123466888999


Q ss_pred             HHHcCCeeeeeeE---EeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          314 YIKEGKIRSKHVI---YYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       314 ~~~~g~i~~~~~~---~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ++.++.+.+.+..   .++++++++|++.+.++...+|+|++
T Consensus       295 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         295 LLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             HHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            9999999876443   47999999999999999888999863

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=9.1e-34  Score=259.92  Aligned_cols=300  Identities=21%  Similarity=0.222  Sum_probs=237.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++.+.        +.+++.+.++    |.++++||+||+.++++|+.|+....|.....    +|...+.+++|+|
T Consensus         1 ~~a~~~~~~--------~~~~~~~~~~----~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~----~p~~~g~~~~G~v   64 (334)
T cd08234           1 MKALVYEGP--------GELEVEEVPV----PEPGPDEVLIKVAACGICGTDLHIYEGEFGAA----PPLVPGHEFAGVV   64 (334)
T ss_pred             CeeEEecCC--------CceEEEeccC----CCCCCCeEEEEEEEEeEchhhhHHhcCCCCCC----CCcccccceEEEE
Confidence            567777643        3678887755    77999999999999999999999888654321    3334445899999


Q ss_pred             EEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|++++.+++||+|+.                             ..|+|++|+.++.+.++.+   |+++++.+ ++
T Consensus        65 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l---P~~~~~~~-aa  140 (334)
T cd08234          65 VAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKI---PDNLSFEE-AA  140 (334)
T ss_pred             EEeCCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEEC---cCCCCHHH-Hh
Confidence            999999999999999983                             1488999999999888665   99999988 55


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      .+ ..+.++++++ +.+++++|++|+|+|+ |.+|.+++++|+..|++ |+++++++++.+.++ ++|++.++++.+ .+
T Consensus       141 ~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~  215 (334)
T cd08234         141 LA-EPLSCAVHGL-DLLGIKPGDSVLVFGA-GPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK-KLGATETVDPSR-ED  215 (334)
T ss_pred             hh-hHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCeEEecCCC-CC
Confidence            54 7888999998 6789999999999975 99999999999999996 888988999999997 899988888765 34


Q ss_pred             HHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc
Q 042784          223 FDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM  301 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (356)
                      +... +...++++|++|||+|. ..+..++++++++|+++.+|......     . .......++.+++++.+....   
T Consensus       216 ~~~~-~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~---  285 (334)
T cd08234         216 PEAQ-KEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDA-----R-VSISPFEIFQKELTIIGSFIN---  285 (334)
T ss_pred             HHHH-HHhcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCC-----C-cccCHHHHHhCCcEEEEeccC---
Confidence            4444 33445689999999975 57889999999999999998754311     0 111223344567777765432   


Q ss_pred             chHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          302 DRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       302 ~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                         .+.++++++++.++.+.+  .++.++++++++++++.+.+ ...||+|+
T Consensus       286 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         286 ---PYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             ---HHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence               346788999999999875  35678999999999999998 77889886

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=7e-34  Score=261.22  Aligned_cols=294  Identities=17%  Similarity=0.195  Sum_probs=231.5

Q ss_pred             CCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhc-CCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCC
Q 042784           28 TSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMT-GTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGD  106 (356)
Q Consensus        28 ~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~-g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd  106 (356)
                      +.+.+++++.++    |.++++||+|||.++++|++|..... |.. +.....++...+++++|+|+.+|+++..+++||
T Consensus         5 ~~~~~~~~~~~~----p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~-~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   79 (339)
T cd08232           5 AAGDLRVEERPA----PEPGPGEVRVRVAAGGICGSDLHYYQHGGF-GTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQ   79 (339)
T ss_pred             cCCceEEEEcCC----CCCCCCEEEEEEEEEEECcccHHHHcCCCC-CcccccCCeecCccceEEEEeeCCCCCcCCCCC
Confidence            347899999866    77999999999999999999988763 321 111222333445599999999999999999999


Q ss_pred             EEEe----------------------------------ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhH
Q 042784          107 IVLR----------------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAA  152 (356)
Q Consensus       107 ~V~~----------------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta  152 (356)
                      +|+.                                  ..|+|++|+.++.+.++++   |+++++++ ++ +..++++|
T Consensus        80 ~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i---P~~~~~~~-aa-~~~~~~~a  154 (339)
T cd08232          80 RVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPL---PDGLSLRR-AA-LAEPLAVA  154 (339)
T ss_pred             EEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEEC---cCCCCHHH-hh-hcchHHHH
Confidence            9983                                  1488999999999888565   99999988 44 46888999


Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC
Q 042784          153 WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       153 ~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      |+++.....+ ++++|||+| +|++|.+++++|+.+|+ +|++++.++++.++++ ++|+++++++++ .++    .++.
T Consensus       155 ~~~l~~~~~~-~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~-~~g~~~vi~~~~-~~~----~~~~  226 (339)
T cd08232         155 LHAVNRAGDL-AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATDLADAPLAVAR-AMGADETVNLAR-DPL----AAYA  226 (339)
T ss_pred             HHHHHhcCCC-CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCCEEEcCCc-hhh----hhhh
Confidence            9999766666 899999987 59999999999999999 8999998888888887 899988898865 332    2222


Q ss_pred             --CCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHH
Q 042784          232 --PNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFT  308 (356)
Q Consensus       232 --~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (356)
                        .+++|+++||+|. ..+...+++|+++|+++.+|.....        ...+...++.+++++.+...      ..+.+
T Consensus       227 ~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~------~~~~~  292 (339)
T cd08232         227 ADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGP--------VPLPLNALVAKELDLRGSFR------FDDEF  292 (339)
T ss_pred             ccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCC--------ccCcHHHHhhcceEEEEEec------CHHHH
Confidence              2469999999995 5788999999999999999864310        11123334567777766542      23467


Q ss_pred             HHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          309 VEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       309 ~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +++++++.++.+++  .+..+|+++++++|++.+.++...||+|+++
T Consensus       293 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         293 AEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             HHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence            88999999998864  3667899999999999999888889999874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=9.9e-34  Score=259.29  Aligned_cols=317  Identities=21%  Similarity=0.213  Sum_probs=242.5

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      +|+|.+...     +.++.+++++.++    |.|.++||+|++.++++|+.|..+..|......  +++...+++++|+|
T Consensus         1 ~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~--~~~~~~g~e~~G~v   69 (331)
T cd08273           1 NREVVVTRR-----GGPEVLKVVEADL----PEPAAGEVVVKVEASGVSFADVQMRRGLYPDQP--PLPFTPGYDLVGRV   69 (331)
T ss_pred             CeeEEEccC-----CCcccEEEeccCC----CCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCC--CCCcccccceEEEE
Confidence            366777754     4567899998876    678899999999999999999998876432221  23333445889999


Q ss_pred             EEeccCCCCCCCCCEEEec--cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784           93 RVIRSKDSKYSDGDIVLRA--FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      +.+|+++..+++||+|+..  .|+|++|+.++.+.++..   |+++++++ ++.+++++.+||+++.+.+++.+|++|+|
T Consensus        70 ~~vG~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~---p~~~~~~~-a~~~~~~~~ta~~~l~~~~~~~~g~~vlI  145 (331)
T cd08273          70 DALGSGVTGFEVGDRVAALTRVGGNAEYINLDAKYLVPV---PEGVDAAE-AVCLVLNYVTAYQMLHRAAKVLTGQRVLI  145 (331)
T ss_pred             EEeCCCCccCCCCCEEEEeCCCcceeeEEEechHHeEEC---CCCCCHHH-HHhhhhHHHHHHHHHHHhcCCCCCCEEEE
Confidence            9999999999999999932  289999999999887555   99999998 78999999999999987788999999999


Q ss_pred             EcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHH
Q 042784          171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAV  250 (356)
Q Consensus       171 ~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~  250 (356)
                      +|++|++|++++++|+..|++|++++. +++.+.++ ++|+. .+++.. .++...  +..++++|.++||+|+.....+
T Consensus       146 ~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~-~~g~~-~~~~~~-~~~~~~--~~~~~~~d~vl~~~~~~~~~~~  219 (331)
T cd08273         146 HGASGGVGQALLELALLAGAEVYGTAS-ERNHAALR-ELGAT-PIDYRT-KDWLPA--MLTPGGVDVVFDGVGGESYEES  219 (331)
T ss_pred             ECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHH-HcCCe-EEcCCC-cchhhh--hccCCCceEEEECCchHHHHHH
Confidence            999999999999999999999999996 88888887 78975 455543 344333  3344689999999999888999


Q ss_pred             HHhcccCCEEEEEecccccccccccccchh---------hhhhhhccceEEEEEeccc--ccchHHHHHHHHHHHHHcCC
Q 042784          251 LNHVNVHARIILCGMISQYNKVWTERDGVR---------NLLNMIGKEVKMEGFMIGS--HMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       251 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~g~  319 (356)
                      +++++++|+++.+|........ .....+.         .....+.+++++.......  ......+.++++++++.++.
T Consensus       220 ~~~l~~~g~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  298 (331)
T cd08273         220 YAALAPGGTLVCYGGNSSLLQG-RRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGK  298 (331)
T ss_pred             HHHhcCCCEEEEEccCCCCCCc-cccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999876542100 0000000         0011122333333322211  11234577889999999999


Q ss_pred             eeeeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          320 IRSKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       320 i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      +.+.+..++++++++++++.+.+++..||+|+
T Consensus       299 l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         299 IRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             ccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence            98877789999999999999998888889886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.3e-33  Score=260.10  Aligned_cols=303  Identities=16%  Similarity=0.157  Sum_probs=238.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ||+|++.+        ++.+++++.++    |.| +++||+||+.++++|++|+....|....  ..+..+  ++|++|+
T Consensus         1 m~~~~~~~--------~~~~~~~~~~~----p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~--g~e~~G~   64 (345)
T cd08287           1 MRATVIHG--------PGDIRVEEVPD----PVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPI--GHEFVGV   64 (345)
T ss_pred             CceeEEec--------CCceeEEeCCC----CCCCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCccc--ccceEEE
Confidence            56777764        24688888866    665 8999999999999999999888764321  223444  4599999


Q ss_pred             EEEeccCCCCCCCCCEEEecc-----------------------------CCeeeEEeecCC--cccccCCCCCCCCccc
Q 042784           92 ARVIRSKDSKYSDGDIVLRAF-----------------------------LPVAEYSLLPCD--LLTRKLDPASGIPFPD  140 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~~-----------------------------g~~a~~~~v~~~--~~~~~i~~P~~~s~~~  140 (356)
                      |+++|+++..+++||+|+..+                             |+|++|+.++.+  .++++   |++++++.
T Consensus        65 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~l---P~~l~~~~  141 (345)
T cd08287          65 VEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKV---PGSPSDDE  141 (345)
T ss_pred             EEEeCCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEEC---CCCCChhh
Confidence            999999999999999998311                             889999999974  56444   99998722


Q ss_pred             c-c---cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCcee
Q 042784          141 Y-L---SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       141 ~-a---a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      . +   +++...+.+|++++. .+++++|++|+|.| +|++|++++++|+..|+ .++++++++++.+.++ ++|++.++
T Consensus       142 ~~~~~~~~l~~~~~~a~~~~~-~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~ga~~v~  218 (345)
T cd08287         142 DLLPSLLALSDVMGTGHHAAV-SAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR-EFGATDIV  218 (345)
T ss_pred             hhhhhhHhhhcHHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCceEe
Confidence            0 1   134467899999985 68899999999977 69999999999999999 5888887888888888 89999999


Q ss_pred             ecCChhhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEE
Q 042784          216 NYNSEMSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKME  293 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (356)
                      +++. .++.+.+.++++ +++|+++||+|+ ..+..++++++++|+++.+|.....        ...+....+.+++++.
T Consensus       219 ~~~~-~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~--------~~~~~~~~~~~~~~~~  289 (345)
T cd08287         219 AERG-EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGG--------VELDVRELFFRNVGLA  289 (345)
T ss_pred             cCCc-ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCC--------CccCHHHHHhcceEEE
Confidence            9876 567788888764 589999999986 5889999999999999998865421        1122334567888887


Q ss_pred             EEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          294 GFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      +....     ..+.++++++++.++.+++  .++..++++++++|++.+.+++. .|++|+
T Consensus       290 ~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~  344 (345)
T cd08287         290 GGPAP-----VRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRA-IKVLLR  344 (345)
T ss_pred             EecCC-----cHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCc-eEEEeC
Confidence            64322     2357888999999999886  45678999999999999887665 499985

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=1.2e-33  Score=259.88  Aligned_cols=307  Identities=20%  Similarity=0.137  Sum_probs=237.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++...+       ..+++.+.+.    |.+.++|++|||.++++|+.|..++.+.........++...+++++|+|
T Consensus         1 ~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V   69 (341)
T cd05281           1 MKAIVKTKAG-------PGAELVEVPV----PKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEV   69 (341)
T ss_pred             CcceEEecCC-------CceEEEeCCC----CCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEE
Confidence            5778888543       3688887754    7789999999999999999998876542211111122333445899999


Q ss_pred             EEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|++++.+++||+|+.                             ..|+|++|++++.+.++.+   |++++.+.  +
T Consensus        70 ~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~l---P~~~~~~~--a  144 (341)
T cd05281          70 VEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKN---DKDIPPEI--A  144 (341)
T ss_pred             EEECCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEEC---cCCCCHHH--h
Confidence            999999999999999983                             1488999999999887554   99999854  6


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      +++..+.++++++.  ...++|++|+|+|+ |++|++++++|+..|+ +|++++.++++...++ ++|++++++++. .+
T Consensus       145 ~~~~~~~~a~~~~~--~~~~~g~~vlV~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~  219 (341)
T cd05281         145 SIQEPLGNAVHTVL--AGDVSGKSVLITGC-GPIGLMAIAVAKAAGASLVIASDPNPYRLELAK-KMGADVVINPRE-ED  219 (341)
T ss_pred             hhhhHHHHHHHHHH--hcCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCcceeeCccc-cc
Confidence            78888899998875  34578999999875 9999999999999999 7999988888888888 899988888765 56


Q ss_pred             HHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc
Q 042784          223 FDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH  300 (356)
Q Consensus       223 ~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (356)
                      +. .++++++ +++|++|||+|. .....++++|+++|+++.+|.....     ...  ........+++.+.+..... 
T Consensus       220 ~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~-  290 (341)
T cd05281         220 VV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGP-----VDI--DLNNLVIFKGLTVQGITGRK-  290 (341)
T ss_pred             HH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCC-----ccc--ccchhhhccceEEEEEecCC-
Confidence            76 7777764 589999999986 4788999999999999998865431     010  11112455666666654221 


Q ss_pred             cchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          301 MDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       301 ~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                         ..+.++++++++.++.+.  +.+...++++++++||+.+.+++ .||+|+++
T Consensus       291 ---~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~  341 (341)
T cd05281         291 ---MFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP  341 (341)
T ss_pred             ---cchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence               224567889999999876  44666899999999999999988 89999863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.3e-33  Score=254.86  Aligned_cols=311  Identities=21%  Similarity=0.293  Sum_probs=249.4

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++...     +.++.+++++.+.    |.+.+++|+|++.++++|++|+....|........+..+|+  +++|+|
T Consensus         1 ~~a~~~~~~-----~~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~--e~~G~v   69 (326)
T cd08272           1 MKALVLESF-----GGPEVFELREVPR----PQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGC--DVAGVV   69 (326)
T ss_pred             CeEEEEccC-----CCchheEEeecCC----CCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCccccc--ceeEEE
Confidence            577877654     3445688887755    56889999999999999999999887643211112334454  889999


Q ss_pred             EEeccCCCCCCCCCEEEec-------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCC
Q 042784           93 RVIRSKDSKYSDGDIVLRA-------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSG  165 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g  165 (356)
                      +.+|+++.++++||+|+..       .|+|++|+.++.+.++..   |+++++.+ ++.++..+.+||+++.+..++++|
T Consensus        70 ~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~---p~~~~~~~-~~~~~~~~~~a~~~l~~~~~~~~~  145 (326)
T cd08272          70 EAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALK---PANLSMRE-AAALPLVGITAWEGLVDRAAVQAG  145 (326)
T ss_pred             EEeCCCCCCCCCCCEEEEccCCcCCCCCceeEEEEecHHHcccC---CCCCCHHH-HHHhHHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999932       478999999998877554   99999988 788899999999998878999999


Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCch
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGG  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~  244 (356)
                      ++++|+|++|++|++++++++..|++|++++++ ++.+.++ ++|.+.+++... . +...+.+.++ .++|.++||+|+
T Consensus       146 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~-~-~~~~~~~~~~~~~~d~v~~~~~~  221 (326)
T cd08272         146 QTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFAR-SLGADPIIYYRE-T-VVEYVAEHTGGRGFDVVFDTVGG  221 (326)
T ss_pred             CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHHH-HcCCCEEEecch-h-HHHHHHHhcCCCCCcEEEECCCh
Confidence            999999999999999999999999999999977 8888887 899988888765 4 7777887774 589999999999


Q ss_pred             hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccc--c----cchHHHHHHHHHHHHHcC
Q 042784          245 KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS--H----MDRFADFTVEMESYIKEG  318 (356)
Q Consensus       245 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~g  318 (356)
                      .....++++++++|+++.+|.... .          .......+++++.+.....  .    .....+.+.++++++.++
T Consensus       222 ~~~~~~~~~l~~~g~~v~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  290 (326)
T cd08272         222 ETLDASFEAVALYGRVVSILGGAT-H----------DLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERG  290 (326)
T ss_pred             HHHHHHHHHhccCCEEEEEecCCc-c----------chhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCC
Confidence            888889999999999999876531 0          1111225666666655322  1    122346788899999999


Q ss_pred             Ceeeeee-EEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          319 KIRSKHV-IYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       319 ~i~~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      .+.+.++ ..|+++++.++++.+.+++..+|+|+++
T Consensus       291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         291 QLRPLLDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             CcccccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence            9987765 8899999999999999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=100.00  E-value=3.4e-34  Score=264.40  Aligned_cols=323  Identities=25%  Similarity=0.330  Sum_probs=236.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCC------------ccCC
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGL------------YFPQ   79 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~------------~~~~   79 (356)
                      ||++.+.+++    ...+.+++++.++    |.| +++||+|||.++++|++|.....|...+.            ....
T Consensus         1 ~~a~~~~~~~----~~~~~~~~~~~~~----p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~   72 (350)
T cd08248           1 MKAWQIHSYG----GIDSLLLLENARI----PVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIE   72 (350)
T ss_pred             CceEEecccC----CCcceeeecccCC----CCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCC
Confidence            5777777653    1112478887655    778 49999999999999999999887631100            0112


Q ss_pred             CccCceeeeeEEEEEeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHH
Q 042784           80 FNLNQVILAFGIARVIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWV  154 (356)
Q Consensus        80 ~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~  154 (356)
                      +|...|+|++|+|..+|+++..+++||+|+..     .|+|++|+.++.+.++..   |+++++++ ++.+++.+.|||+
T Consensus        73 ~p~~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~l---p~~~~~~~-aa~~~~~~~ta~~  148 (350)
T cd08248          73 FPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKK---PKNLSHEE-AASLPYAGLTAWS  148 (350)
T ss_pred             CCeeecceeEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecC---CCCCCHHH-HhhchhHHHHHHH
Confidence            23344458999999999999999999999931     589999999999888554   99999988 7899999999999


Q ss_pred             HHHHhCCCCC----CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHH
Q 042784          155 GIEVLGQPKS----GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       155 ~l~~~~~~~~----g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      ++...+++.+    |++|+|+|++|++|++++++|+.+|++|+++.++ ++.+.++ ++|.+.+++..+ .++.+.+.. 
T Consensus       149 ~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~-~~~~~~l~~-  224 (350)
T cd08248         149 ALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVK-SLGADDVIDYNN-EDFEEELTE-  224 (350)
T ss_pred             HHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHH-HhCCceEEECCC-hhHHHHHHh-
Confidence            9987777754    9999999999999999999999999999988854 6777777 899988888765 455555543 


Q ss_pred             CCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccccccccc-ccc-cchhhhhhhhccceE-E-EEEec-ccccchHH
Q 042784          231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVW-TER-DGVRNLLNMIGKEVK-M-EGFMI-GSHMDRFA  305 (356)
Q Consensus       231 ~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~~-~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~  305 (356)
                       .+++|++|||+|......++++++++|+++.+|......... ... ........+...... + ..... ........
T Consensus       225 -~~~vd~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (350)
T cd08248         225 -RGKFDVILDTVGGDTEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSG  303 (350)
T ss_pred             -cCCCCEEEECCChHHHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCH
Confidence             257999999999988999999999999999998643211000 000 000000011111100 0 00000 00011234


Q ss_pred             HHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          306 DFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       306 ~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ..+.++++++.++.+.+.++..|++++++++++.+.++...+|++++
T Consensus       304 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  350 (350)
T cd08248         304 SALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGKTVIK  350 (350)
T ss_pred             HHHHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence            67889999999999988888899999999999999988878888863

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.5e-33  Score=256.90  Aligned_cols=285  Identities=19%  Similarity=0.151  Sum_probs=226.4

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|++...        ++++++++++    |+++++||+||+.++++|+.|.....|.+    .  ++...+++++|+|
T Consensus         1 ~~a~~~~~~--------~~~~~~~~~~----p~~~~~~vlV~v~a~~i~~~d~~~~~g~~----~--~~~~~G~e~~G~V   62 (319)
T cd08242           1 MKALVLDGG--------LDLRVEDLPK----PEPPPGEALVRVLLAGICNTDLEIYKGYY----P--FPGVPGHEFVGIV   62 (319)
T ss_pred             CeeEEEeCC--------CcEEEEECCC----CCCCCCeEEEEEEEEEEccccHHHHcCCC----C--CCCccCceEEEEE
Confidence            467887642        4688988866    78999999999999999999999887643    2  3334445999999


Q ss_pred             EEeccCCCCCCCCCEEEe--------------------------c----cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR--------------------------A----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~--------------------------~----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +++|++   +++||||..                          +    .|+|++|+.++.+.+++.   |++++.++ +
T Consensus        63 v~~G~~---~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l---P~~~~~~~-a  135 (319)
T cd08242          63 EEGPEA---ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVV---PDLVPDEQ-A  135 (319)
T ss_pred             EEeCCC---CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEEC---cCCCCHHH-h
Confidence            999998   679999951                          1    478999999999887555   99999987 4


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      +.+ ....++|.++ +..++++|++|+|+| +|++|++++|+|+.+|++|++++.++++.+.++ ++|++.++++.. . 
T Consensus       136 a~~-~~~~~~~~~~-~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~-~-  209 (319)
T cd08242         136 VFA-EPLAAALEIL-EQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR-RLGVETVLPDEA-E-  209 (319)
T ss_pred             hhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEeCccc-c-
Confidence            443 5556677666 578899999999997 599999999999999999999999999999999 799987777643 1 


Q ss_pred             HHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc
Q 042784          223 FDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM  301 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (356)
                             ..++++|+++||+|. ..+..++++++++|+++..+.....        ...+...++.++.++.+.....  
T Consensus       210 -------~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~--  272 (319)
T cd08242         210 -------SEGGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGP--------ASFDLTKAVVNEITLVGSRCGP--  272 (319)
T ss_pred             -------ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCC--------CccCHHHheecceEEEEEeccc--
Confidence                   234579999999987 4788999999999999986654321        1223445667788887764432  


Q ss_pred             chHHHHHHHHHHHHHcCCe--eeeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          302 DRFADFTVEMESYIKEGKI--RSKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       302 ~~~~~~l~~~~~~~~~g~i--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                            ++++++++.++.+  .+.+++.|+++++.+||+.+.++. .+|+|++
T Consensus       273 ------~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi~  318 (319)
T cd08242         273 ------FAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLLR  318 (319)
T ss_pred             ------HHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEeC
Confidence                  5778899999998  556778999999999999998665 5899986

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=5.7e-33  Score=253.44  Aligned_cols=316  Identities=18%  Similarity=0.244  Sum_probs=254.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|.+..-     +.++.+.+++.+.    |.+++++|+|+|.++++|+.|.....|........+..+|+  +++|+|
T Consensus         1 ~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~--e~~G~v   69 (328)
T cd08268           1 MRAVRFHQF-----GGPEVLRIEELPV----PAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGY--EAAGVV   69 (328)
T ss_pred             CeEEEEecc-----CCcceeEEeecCC----CCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCc--ceEEEE
Confidence            456666532     3346778877655    56889999999999999999998877654333222344454  889999


Q ss_pred             EEeccCCCCCCCCCEEEecc--------CCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCC
Q 042784           93 RVIRSKDSKYSDGDIVLRAF--------LPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKS  164 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~~--------g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~  164 (356)
                      +.+|+++.++++||+|+ ++        |++++|+.++.+.++..   |+++++++ ++++++.+.+||+++...+++.+
T Consensus        70 ~~~G~~~~~~~~Gd~V~-~~~~~~~~~~g~~~~~~~~~~~~~~~~---p~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~  144 (328)
T cd08268          70 EAVGAGVTGFAVGDRVS-VIPAADLGQYGTYAEYALVPAAAVVKL---PDGLSFVE-AAALWMQYLTAYGALVELAGLRP  144 (328)
T ss_pred             EeeCCCCCcCCCCCEEE-eccccccCCCccceEEEEechHhcEeC---CCCCCHHH-HHHhhhHHHHHHHHHHHhcCCCC
Confidence            99999999999999999 43        88999999999887555   99999988 78999999999999987888999


Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g  243 (356)
                      +++++|+|++|++|++++++++..|+++++++.++++.+.++ ++|.+.++++.. .++.+.+.+.+. .++|++++++|
T Consensus       145 ~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~  222 (328)
T cd08268         145 GDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALL-ALGAAHVIVTDE-EDLVAEVLRITGGKGVDVVFDPVG  222 (328)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEecCC-ccHHHHHHHHhCCCCceEEEECCc
Confidence            999999999999999999999999999999999999999997 889887887765 567677777664 47999999999


Q ss_pred             hhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc---chHHHHHHHHHHHHHcCCe
Q 042784          244 GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM---DRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       244 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~g~i  320 (356)
                      +.....++++++++|+++.+|......       ...+....+.+++++.+..+....   ......++.+.+++.++.+
T Consensus       223 ~~~~~~~~~~l~~~g~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (328)
T cd08268         223 GPQFAKLADALAPGGTLVVYGALSGEP-------TPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGAL  295 (328)
T ss_pred             hHhHHHHHHhhccCCEEEEEEeCCCCC-------CCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCC
Confidence            988899999999999999998654310       112223347788888887654321   2334567777788888888


Q ss_pred             eeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          321 RSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       321 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      .+..+..|+++++.++++.+.+++..+|+|+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  328 (328)
T cd08268         296 KPVVDRVFPFDDIVEAHRYLESGQQIGKIVVTP  328 (328)
T ss_pred             cCCcccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            877777899999999999999888888999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.6e-33  Score=255.99  Aligned_cols=296  Identities=20%  Similarity=0.264  Sum_probs=232.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|+++..     + ++.+++++.+.    |+++++||+||+.++++|++|++...+..  ....+..+|  ++++|+|
T Consensus         1 ~~~~~~~~~-----~-~~~~~~~~~~~----~~~~~~ev~v~v~~~~i~~~d~~~~~~~~--~~~~~~~~g--~e~~G~v   66 (325)
T cd08264           1 MKALVFEKS-----G-IENLKVEDVKD----PKPGPGEVLIRVKMAGVNPVDYNVINAVK--VKPMPHIPG--AEFAGVV   66 (325)
T ss_pred             CeeEEeccC-----C-CCceEEEeccC----CCCCCCeEEEEEEEEEechHHHHHHhCCC--CCCCCeecc--cceeEEE
Confidence            467776532     2 46788877654    57899999999999999999998876411  111233445  4899999


Q ss_pred             EEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +.+|++++.+++||+|+..                             .|+|++|+.++.+.++++   |+++++++ ++
T Consensus        67 ~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~---p~~~~~~~-~~  142 (325)
T cd08264          67 EEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKI---PDSISDEL-AA  142 (325)
T ss_pred             EEECCCCCCCCCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeC---CCCCCHHH-hh
Confidence            9999999999999999831                             489999999999887554   99999998 78


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      .+++++.+||+++.. +++++|++|+|+|++|++|++++++|+..|++|++++    +.+.++ ++|+++++++++   .
T Consensus       143 ~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~----~~~~~~-~~g~~~~~~~~~---~  213 (325)
T cd08264         143 SLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS----RKDWLK-EFGADEVVDYDE---V  213 (325)
T ss_pred             hhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe----HHHHHH-HhCCCeeecchH---H
Confidence            999999999999964 8899999999999999999999999999999998886    236666 799988887653   3


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccch
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDR  303 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (356)
                      .+.+++++ +++|+++|++|...+..++++++++|+++.+|.....       ....+...++.++.++.+...+.    
T Consensus       214 ~~~l~~~~-~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~----  281 (325)
T cd08264         214 EEKVKEIT-KMADVVINSLGSSFWDLSLSVLGRGGRLVTFGTLTGG-------EVKLDLSDLYSKQISIIGSTGGT----  281 (325)
T ss_pred             HHHHHHHh-CCCCEEEECCCHHHHHHHHHhhccCCEEEEEecCCCC-------CCccCHHHHhhcCcEEEEccCCC----
Confidence            55566666 7899999999998999999999999999999874221       12234445556677776654332    


Q ss_pred             HHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEE
Q 042784          304 FADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVV  350 (356)
Q Consensus       304 ~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  350 (356)
                       ++.++++++++....  ..+..+|+++++++|++.+.++...+|++
T Consensus       282 -~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kv~  325 (325)
T cd08264         282 -RKELLELVKIAKDLK--VKVWKTFKLEEAKEALKELFSKERDGRIL  325 (325)
T ss_pred             -HHHHHHHHHHHHcCC--ceeEEEEcHHHHHHHHHHHHcCCCccccC
Confidence             356778888886444  45667899999999999999887777753

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=2.7e-33  Score=257.42  Aligned_cols=298  Identities=20%  Similarity=0.170  Sum_probs=232.7

Q ss_pred             CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEE
Q 042784           30 DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVL  109 (356)
Q Consensus        30 ~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~  109 (356)
                      +.+++++.+.    |.+.++||+||+.++++|+.|+.++.+........+++...+++++|+|+++|++++++++||+|+
T Consensus         9 ~~~~l~~~~~----p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         9 YGAELTEVPV----PEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             CCcEEEECCC----CCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            5578887755    678999999999999999999988765311111112232334589999999999999999999998


Q ss_pred             e-----------------------------ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhC
Q 042784          110 R-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLG  160 (356)
Q Consensus       110 ~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~  160 (356)
                      .                             ..|+|++|++++++.++..   |++++.+.  ++++..+.+|++++.  .
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l---p~~~~~~~--a~~~~~~~~a~~~~~--~  157 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKN---PKSIPPEY--ATIQEPLGNAVHTVL--A  157 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEEC---cCCCChHh--hhhcchHHHHHHHHH--c
Confidence            3                             2489999999999887554   99999865  568888999998873  5


Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEE
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVY  238 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~v  238 (356)
                      ...+|++|+|.| +|++|.+++++|+.+|++ |++++.++++.+.++ ++|++.++++.. .++.+.+.++++ +++|++
T Consensus       158 ~~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~-~~~~~~l~~~~~~~~~d~v  234 (340)
T TIGR00692       158 GPISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAK-KMGATYVVNPFK-EDVVKEVADLTDGEGVDVF  234 (340)
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCcEEEcccc-cCHHHHHHHhcCCCCCCEE
Confidence            578999999977 599999999999999996 888877888888888 899988888866 678888888764 589999


Q ss_pred             EECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHc
Q 042784          239 LDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKE  317 (356)
Q Consensus       239 ld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (356)
                      |||+|+ ..+...+++++++|+++.+|.....     .+  ......++.+++.+.+...    ....+.+.++++++++
T Consensus       235 ld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~  303 (340)
T TIGR00692       235 LEMSGAPKALEQGLQAVTPGGRVSLLGLPPGK-----VT--IDFTNKVIFKGLTIYGITG----RHMFETWYTVSRLIQS  303 (340)
T ss_pred             EECCCCHHHHHHHHHhhcCCCEEEEEccCCCC-----cc--cchhhhhhhcceEEEEEec----CCchhhHHHHHHHHHc
Confidence            999885 5788899999999999999875321     01  1112244556677665442    1223557889999999


Q ss_pred             CCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          318 GKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       318 g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +.++  +.+...++++++.++++.+.+++ .||+|+++
T Consensus       304 ~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~gkvvv~~  340 (340)
T TIGR00692       304 GKLDLDPIITHKFKFDKFEKGFELMRSGQ-TGKVILSL  340 (340)
T ss_pred             CCCChHHheeeeeeHHHHHHHHHHHhcCC-CceEEEeC
Confidence            9986  45677899999999999998877 49999874

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6e-33  Score=251.99  Aligned_cols=299  Identities=16%  Similarity=0.107  Sum_probs=235.0

Q ss_pred             CCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhh-cCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCE
Q 042784           29 SDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATM-TGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDI  107 (356)
Q Consensus        29 ~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~-~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~  107 (356)
                      ++.++++++++    |.+.++||+||+.++++|+.|...+ .|..... .+..+...+++++|+|+.+|++++.+++||+
T Consensus         4 ~~~~~~~~~~~----~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~-~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~   78 (312)
T cd08269           4 PGRFEVEEHPR----PTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFV-YPAEPGGPGHEGWGRVVALGPGVRGLAVGDR   78 (312)
T ss_pred             CCeeEEEECCC----CCCCCCeEEEEEEEeeecccchHHHccCCCCcc-cCCCCcccceeeEEEEEEECCCCcCCCCCCE
Confidence            46788888765    7799999999999999999998887 5532111 1112333445899999999999999999999


Q ss_pred             EEe-ccCCeeeEEeecCCcccccCCCCCCCCccccccccC-chhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHH
Q 042784          108 VLR-AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLG-IPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLA  185 (356)
Q Consensus       108 V~~-~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~-~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la  185 (356)
                      |+. ..|+|++|+.++.+.+++.   |+++  ..  ++++ .++.++++++. .++++++++|+|+| +|++|.+++++|
T Consensus        79 V~~~~~g~~~~~~~v~~~~~~~l---P~~~--~~--~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~la  149 (312)
T cd08269          79 VAGLSGGAFAEYDLADADHAVPL---PSLL--DG--QAFPGEPLGCALNVFR-RGWIRAGKTVAVIG-AGFIGLLFLQLA  149 (312)
T ss_pred             EEEecCCcceeeEEEchhheEEC---CCch--hh--hHHhhhhHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHH
Confidence            993 2589999999999888555   8888  23  3444 78899999986 78899999999997 599999999999


Q ss_pred             HHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEE
Q 042784          186 KLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIIL  262 (356)
Q Consensus       186 ~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~  262 (356)
                      +..|++ |+++++++++.++++ ++|++.+++++. .++.+.+.++++ .++|+++||+|. ..+..++++++++|+++.
T Consensus       150 ~~~g~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~  227 (312)
T cd08269         150 AAAGARRVIAIDRRPARLALAR-ELGATEVVTDDS-EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVI  227 (312)
T ss_pred             HHcCCcEEEEECCCHHHHHHHH-HhCCceEecCCC-cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            999997 999998888999887 899988887665 678888888774 589999999986 478899999999999999


Q ss_pred             EecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHH
Q 042784          263 CGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSL  340 (356)
Q Consensus       263 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~  340 (356)
                      +|......       ...+......+++.+.++...+. ....+.+++++++++++.+.+  .+..+|+++++++|++.+
T Consensus       228 ~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~  299 (312)
T cd08269         228 FGYHQDGP-------RPVPFQTWNWKGIDLINAVERDP-RIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAA  299 (312)
T ss_pred             EccCCCCC-------cccCHHHHhhcCCEEEEecccCc-cchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHH
Confidence            98653210       11122344566666666543322 223467899999999999986  356789999999999999


Q ss_pred             HcCCC-cceEEE
Q 042784          341 FSSSN-IGKVVI  351 (356)
Q Consensus       341 ~~~~~-~gkvvi  351 (356)
                      .+++. .+|+++
T Consensus       300 ~~~~~~~~~~~~  311 (312)
T cd08269         300 RRRPDGFIKGVI  311 (312)
T ss_pred             HhCCCCceEEEe
Confidence            98865 578876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=5.5e-33  Score=254.23  Aligned_cols=298  Identities=18%  Similarity=0.126  Sum_probs=234.8

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |++|++.+.+   .+.++++++.+.+.    |.+.++||+||+.++++|++|.+...|....   ..++...++|++|+|
T Consensus         1 ~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V   70 (329)
T cd08298           1 MKAMVLEKPG---PIEENPLRLTEVPV----PEPGPGEVLIKVEACGVCRTDLHIVEGDLPP---PKLPLIPGHEIVGRV   70 (329)
T ss_pred             CeEEEEecCC---CCCCCCceEEeccC----CCCCCCEEEEEEEEEeccHHHHHHHhCCCCC---CCCCccccccccEEE
Confidence            5677776542   11235788877755    5689999999999999999999988764321   223334445999999


Q ss_pred             EEeccCCCCCCCCCEEEe------------------------------ccCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR------------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~------------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +.+|+++.++++||+|++                              ..|+|++|+.++.+.++.+   |+++++.+ +
T Consensus        71 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l---p~~~~~~~-~  146 (329)
T cd08298          71 EAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPI---PEDYDDEE-A  146 (329)
T ss_pred             EEECCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEEC---CCCCCHHH-h
Confidence            999999999999999973                              1489999999999887554   99999998 7


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      +++++++.|||+++ +.++++++++|+|+| +|++|++++++++..|++|+++++++++.+.++ ++|++.++++.. . 
T Consensus       147 ~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~-  221 (329)
T cd08298         147 APLLCAGIIGYRAL-KLAGLKPGQRLGLYG-FGASAHLALQIARYQGAEVFAFTRSGEHQELAR-ELGADWAGDSDD-L-  221 (329)
T ss_pred             hHhhhhhHHHHHHH-HhhCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHH-HhCCcEEeccCc-c-
Confidence            89999999999999 789999999999997 599999999999999999999999999999997 899987777653 1 


Q ss_pred             HHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc
Q 042784          223 FDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM  301 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (356)
                              .++++|+++++.+. ..++.++++++++|+++.+|....       .....+... +.++..+.+....   
T Consensus       222 --------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~-~~~~~~i~~~~~~---  282 (329)
T cd08298         222 --------PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMS-------DIPAFDYEL-LWGEKTIRSVANL---  282 (329)
T ss_pred             --------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCC-------CCCccchhh-hhCceEEEEecCC---
Confidence                    23579999998654 588999999999999998875321       001112222 3345555544322   


Q ss_pred             chHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          302 DRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       302 ~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                        ..+.++.++++++++.+++. .++|+++++++|++.+.+++..||+|+
T Consensus       283 --~~~~~~~~~~l~~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         283 --TRQDGEEFLKLAAEIPIKPE-VETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             --CHHHHHHHHHHHHcCCCCce-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence              23457889999999998874 578999999999999999999999874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08251 polyketide_synthase polyketide synthase

Probab=100.00  E-value=4.2e-33  Score=251.57  Aligned_cols=292  Identities=22%  Similarity=0.347  Sum_probs=236.3

Q ss_pred             CCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEEec----cCCeeeEE
Q 042784           44 DSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRA----FLPVAEYS  119 (356)
Q Consensus        44 p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~----~g~~a~~~  119 (356)
                      |.+.+++|+||+.++++|+.|+..+.|.+...  +.++...+++++|+|+++|++++++++||+|+..    .|+|++|+
T Consensus         3 p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~   80 (303)
T cd08251           3 APPGPGEVRIQVRAFSLNFGDLLCVRGLYPTM--PPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLV   80 (303)
T ss_pred             CCCCCCEEEEEEEEeecChHHHHHHCCCCCCC--CCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEE
Confidence            67899999999999999999999887654322  2233344558999999999999999999999932    28999999


Q ss_pred             eecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          120 LLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       120 ~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      .++.+.++..   |++++.++ +++++..+++||+++. ..++++|++|+|+|++|++|++++++++.+|++|+++++++
T Consensus        81 ~~~~~~~~~~---p~~~~~~~-aa~~~~~~~ta~~~l~-~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~  155 (303)
T cd08251          81 TVPEDQVVRK---PASLSFEE-ACALPVVFLTVIDAFA-RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSD  155 (303)
T ss_pred             EccHHHeEEC---CCCCCHHH-HHHhHHHHHHHHHHHH-hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            9999887555   99999998 7899999999999995 78899999999999999999999999999999999999899


Q ss_pred             HHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccc
Q 042784          200 DNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDG  278 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  278 (356)
                      ++.+.++ ++|++.++++.. .++.+.+.++++ +++|+++|++++.....++++++++|+++.+|......     . .
T Consensus       156 ~~~~~~~-~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-----~-~  227 (303)
T cd08251         156 DKLEYLK-QLGVPHVINYVE-EDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKS-----A-P  227 (303)
T ss_pred             HHHHHHH-HcCCCEEEeCCC-ccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCc-----c-C
Confidence            9999997 899998888876 577777887774 58999999999888889999999999999988754211     0 0


Q ss_pred             hhhhhhhhccceEEEEEecccc----cchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          279 VRNLLNMIGKEVKMEGFMIGSH----MDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      .... ..+.+++.+....+...    .....+.+.++++++.++.+++.....|++++++++++.+.+++..+|+++
T Consensus       228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         228 SVDL-SVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             ccCh-hHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            0111 12334444444333221    123346688899999999998877789999999999999999888888874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.5e-33  Score=258.66  Aligned_cols=297  Identities=19%  Similarity=0.213  Sum_probs=231.0

Q ss_pred             CeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCC--c--cCCCccCceeeeeEEEEEeccCCCCCCCCC
Q 042784           31 HLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGL--Y--FPQFNLNQVILAFGIARVIRSKDSKYSDGD  106 (356)
Q Consensus        31 ~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~--~--~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd  106 (356)
                      .+++++.+.    |+++++||+||+.++++|++|.+...+...+.  +  ...++...+++++|+|+++|++++.+++||
T Consensus        38 ~~~~~~~~~----p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd  113 (384)
T cd08265          38 ELRVEDVPV----PNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGD  113 (384)
T ss_pred             CEEEEECCC----CCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCC
Confidence            588888865    78999999999999999999998876422111  0  122233444599999999999999999999


Q ss_pred             EEEe----------------------------c-cCCeeeEEeecCCcccccCCCCCC-------CCccccccccCchhh
Q 042784          107 IVLR----------------------------A-FLPVAEYSLLPCDLLTRKLDPASG-------IPFPDYLSSLGIPGF  150 (356)
Q Consensus       107 ~V~~----------------------------~-~g~~a~~~~v~~~~~~~~i~~P~~-------~s~~~~aa~l~~~~~  150 (356)
                      +|+.                            . .|+|++|+.++.+.++..   |++       ++.+  +|+++.+++
T Consensus       114 ~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~l---P~~~~~~~~~~~~~--~a~~~~~~~  188 (384)
T cd08265         114 PVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEI---NELREIYSEDKAFE--AGALVEPTS  188 (384)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEEC---CccccccccCCCHH--HhhhhhHHH
Confidence            9983                            1 589999999999887554   765       3444  467888999


Q ss_pred             hHHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCCh--hhHHHH
Q 042784          151 AAWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSE--MSFDAA  226 (356)
Q Consensus       151 ta~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~--~~~~~~  226 (356)
                      +||+++... +++++|++|+|+| +|++|++++++|+..|+ +|++++.++++.++++ ++|+++++++++.  .++.+.
T Consensus       189 ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~~  266 (384)
T cd08265         189 VAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAAGASKVIAFEISEERRNLAK-EMGADYVFNPTKMRDCLSGEK  266 (384)
T ss_pred             HHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEEcccccccccHHHH
Confidence            999999655 6899999999996 59999999999999999 8999998888888888 8999888887641  267778


Q ss_pred             HHHHCC-CCceEEEECCch--hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccch
Q 042784          227 LTKYFP-NGIDVYLDNVGG--KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDR  303 (356)
Q Consensus       227 i~~~~~-~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (356)
                      ++++++ .++|+|+||+|.  ..+..++++++++|+++.+|.....        .......+..+..++.+.....    
T Consensus       267 v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~l~~~~~~~----  334 (384)
T cd08265         267 VMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATT--------VPLHLEVLQVRRAQIVGAQGHS----  334 (384)
T ss_pred             HHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCC--------CcccHHHHhhCceEEEEeeccC----
Confidence            888774 589999999996  3788999999999999999865331        1112233445566666654321    


Q ss_pred             HHHHHHHHHHHHHcCCeeee--eeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          304 FADFTVEMESYIKEGKIRSK--HVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       304 ~~~~l~~~~~~~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      ....++++++++.++.+.+.  ++++|+++++++|++.+.++ ..+|+|+
T Consensus       335 ~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvvv  383 (384)
T cd08265         335 GHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER-TDGKITI  383 (384)
T ss_pred             CcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEEe
Confidence            12457889999999999763  66789999999999997654 5788885

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=100.00  E-value=1.5e-32  Score=250.42  Aligned_cols=317  Identities=21%  Similarity=0.263  Sum_probs=253.0

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |+++.+..     .+.+..+++++.+.    |.+++++++|||.++++|+.|.....|........|..+|  ++++|+|
T Consensus         1 ~~~~~~~~-----~~~~~~~~~~~~~~----~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g--~e~~G~v   69 (325)
T TIGR02824         1 MKAIEITE-----PGGPEVLVLVEVPL----PVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILG--LEVAGEV   69 (325)
T ss_pred             CceEEEcc-----CCCcccceEEeCCC----CCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCcc--ceeEEEE
Confidence            34555543     23446677777644    4689999999999999999998887754332211223444  5899999


Q ss_pred             EEeccCCCCCCCCCEEEec--cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784           93 RVIRSKDSKYSDGDIVLRA--FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      +.+|+++.++++||+|+..  +|++++|+.++.+.++..   |++++... +++++.+++++|+++.+..++.++++++|
T Consensus        70 ~~vg~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~i---p~~~~~~~-~~~~~~~~~ta~~~~~~~~~~~~~~~vlv  145 (325)
T TIGR02824        70 VAVGEGVSRWKVGDRVCALVAGGGYAEYVAVPAGQVLPV---PEGLSLVE-AAALPETFFTVWSNLFQRGGLKAGETVLI  145 (325)
T ss_pred             EEeCCCCCCCCCCCEEEEccCCCcceeEEEecHHHcEeC---CCCCCHHH-HHhhhHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            9999999999999999932  289999999998877554   99999888 78999999999999888889999999999


Q ss_pred             EcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHHH
Q 042784          171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLEA  249 (356)
Q Consensus       171 ~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~~  249 (356)
                      +|++|++|.+++++++..|++|+++++++++.+.++ ++|.+.+++... .++.+.+++..+ +++|++++|+|...+..
T Consensus       146 ~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  223 (325)
T TIGR02824       146 HGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACE-ALGADIAINYRE-EDFVEVVKAETGGKGVDVILDIVGGSYLNR  223 (325)
T ss_pred             EcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecCc-hhHHHHHHHHcCCCCeEEEEECCchHHHHH
Confidence            999999999999999999999999999999998886 899887777765 567777877764 58999999999888889


Q ss_pred             HHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc-cc----hHHHHHHHHHHHHHcCCeeeee
Q 042784          250 VLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-MD----RFADFTVEMESYIKEGKIRSKH  324 (356)
Q Consensus       250 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~g~i~~~~  324 (356)
                      ++++++++|+++.+|......      . ..+...++.+++++.+...... ..    .....+.++++++.++.+.+.+
T Consensus       224 ~~~~l~~~g~~v~~g~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (325)
T TIGR02824       224 NIKALALDGRIVQIGFQGGRK------A-ELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVI  296 (325)
T ss_pred             HHHhhccCcEEEEEecCCCCc------C-CCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCcc
Confidence            999999999999998754311      1 1233344578999988876542 11    1234567788999999988777


Q ss_pred             eEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          325 VIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       325 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +..+++++++++++.+.++...+|+|+++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  325 (325)
T TIGR02824       297 DKVFPLEDAAQAHALMESGDHIGKIVLTV  325 (325)
T ss_pred             ccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence            78899999999999999888889999864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.4e-32  Score=249.30  Aligned_cols=316  Identities=19%  Similarity=0.249  Sum_probs=246.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++.+..+.     ..+++++++.+.    |.+.+++|+||+.++++|++|+....|.... ..++..+|+  +++|+|
T Consensus         1 ~~a~~~~~~~-----~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~--e~~G~v   68 (325)
T cd08271           1 MKAWVLPKPG-----AALQLTLEEIEI----PGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGV--DGAGVV   68 (325)
T ss_pred             CeeEEEccCC-----CcceeEEeccCC----CCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccc--ceEEEE
Confidence            5777777542     124788988865    7789999999999999999999887764322 122344554  888999


Q ss_pred             EEeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      +.+|++++.+++||+|+..     .|+|++|+.++.+.++..   |++++..+ ++.+.+.+.+|++++.+.+++++|++
T Consensus        69 ~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~i---p~~~~~~~-~a~~~~~~~~a~~~~~~~~~~~~g~~  144 (325)
T cd08271          69 VAVGAKVTGWKVGDRVAYHASLARGGSFAEYTVVDARAVLPL---PDSLSFEE-AAALPCAGLTAYQALFKKLRIEAGRT  144 (325)
T ss_pred             EEeCCCCCcCCCCCEEEeccCCCCCccceeEEEeCHHHeEEC---CCCCCHHH-HHhhhhhHHHHHHHHHHhcCCCCCCE
Confidence            9999999999999999932     489999999999888555   99999988 78899999999999988889999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCchhh
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKM  246 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~  246 (356)
                      |+|+|++|++|++++++++..|++|+++. ++++.+.++ .+|++.+++... .++.+.+.+.. ++++|.+++|+++..
T Consensus       145 vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~  221 (325)
T cd08271         145 ILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYVK-SLGADHVIDYND-EDVCERIKEITGGRGVDAVLDTVGGET  221 (325)
T ss_pred             EEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHHHHH-HcCCcEEecCCC-ccHHHHHHHHcCCCCCcEEEECCCcHh
Confidence            99999989999999999999999998887 778888887 899988887765 56777787776 458999999999887


Q ss_pred             HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc---cchHHHHHHHHHHHHHcCCeeee
Q 042784          247 LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH---MDRFADFTVEMESYIKEGKIRSK  323 (356)
Q Consensus       247 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~g~i~~~  323 (356)
                      ....+++++++|+++.++.....      ............+++.+........   .....+.+.++++++.++.+.+.
T Consensus       222 ~~~~~~~l~~~G~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  295 (325)
T cd08271         222 AAALAPTLAFNGHLVCIQGRPDA------SPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPL  295 (325)
T ss_pred             HHHHHHhhccCCEEEEEcCCCCC------cchhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeec
Confidence            77899999999999988654321      0000001111222333332221111   12344667889999999999887


Q ss_pred             eeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          324 HVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       324 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ....|+++++.++++.+.++...+|+|+++
T Consensus       296 ~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         296 VIEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             cceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence            677899999999999999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=100.00  E-value=1.5e-32  Score=253.68  Aligned_cols=313  Identities=20%  Similarity=0.228  Sum_probs=225.1

Q ss_pred             CeEEEEeeccccCCC-CCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCC-CCCCCCEE
Q 042784           31 HLKLRSASVSLAIDS-IPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDS-KYSDGDIV  108 (356)
Q Consensus        31 ~~~~~~~~~~~p~p~-~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~-~~~~Gd~V  108 (356)
                      .+++++.+++  .|. +.+++|+||+.++++|++|.....+........+..+|  +|++|+|+++|++++ +|++||+|
T Consensus        12 ~~~~~~~~~~--~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g--~e~~G~V~~vG~~v~~~~~~Gd~V   87 (352)
T cd08247          12 PLTITTIKLP--LPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLG--RDYSGVIVKVGSNVASEWKVGDEV   87 (352)
T ss_pred             cceeeccCCC--CCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccC--ceeEEEEEEeCcccccCCCCCCEE
Confidence            4566666663  343 59999999999999999998877542111101133344  589999999999998 89999999


Q ss_pred             Eec-------cCCeeeEEeecCC----cccccCCCCCCCCccccccccCchhhhHHHHHHHhC-CCCCCCEEEEEcCCCh
Q 042784          109 LRA-------FLPVAEYSLLPCD----LLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLG-QPKSGSNVFVSAAAGG  176 (356)
Q Consensus       109 ~~~-------~g~~a~~~~v~~~----~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlV~g~~g~  176 (356)
                      +..       .|+|++|+.++..    .++. +  |+++++++ ++.++.++.|||+++...+ ++++|++|+|+|++|+
T Consensus        88 ~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~-l--P~~l~~~~-aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~  163 (352)
T cd08247          88 CGIYPHPYGGQGTLSQYLLVDPKKDKKSITR-K--PENISLEE-AAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTS  163 (352)
T ss_pred             EEeecCCCCCCceeeEEEEEccccccceeEE-C--CCCCCHHH-HHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCch
Confidence            932       4899999999987    4434 4  99999998 7899999999999998777 7999999999999999


Q ss_pred             HHHHHHHHHHHC-CC-EEEEEeCChHHHHHHHHHhCCCceeecCChh---hHHHHHHHHC-CCCceEEEECCch-hhHHH
Q 042784          177 VGMFAGQLAKLK-GC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM---SFDAALTKYF-PNGIDVYLDNVGG-KMLEA  249 (356)
Q Consensus       177 vG~~~i~la~~~-G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~---~~~~~i~~~~-~~~~d~vld~~g~-~~~~~  249 (356)
                      +|.+++++|+.. |. +|+++. ++++.+.++ ++|+++++++++..   .+.+.++..+ ++++|++|||+|+ .....
T Consensus       164 vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~  241 (352)
T cd08247         164 VGRFAIQLAKNHYNIGTVVGTC-SSRSAELNK-KLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPH  241 (352)
T ss_pred             HHHHHHHHHHhcCCcceEEEEe-ChhHHHHHH-HhCCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECCCCHHHHHH
Confidence            999999999988 55 677776 566667776 89998888876522   2344444455 5689999999998 57788


Q ss_pred             HHHhcc---cCCEEEEEeccccccccccc-cc--chhhhhhhhccceEEEEEecccc-cchHHHHHHHHHHHHHcCCeee
Q 042784          250 VLNHVN---VHARIILCGMISQYNKVWTE-RD--GVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKEGKIRS  322 (356)
Q Consensus       250 ~~~~l~---~~G~~v~~g~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~g~i~~  322 (356)
                      ++++++   ++|+++.++........... ..  ........+.++.++........ .....+.++++++++.++.+++
T Consensus       242 ~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  321 (352)
T cd08247         242 INSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKP  321 (352)
T ss_pred             HHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeEe
Confidence            899999   99999987522210000000 00  00000011222222221111100 0011356788999999999998


Q ss_pred             eeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          323 KHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       323 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      .+.++++++++++|++.+.+++..||+|+++
T Consensus       322 ~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~  352 (352)
T cd08247         322 PIDSVYPFEDYKEAFERLKSNRAKGKVVIKV  352 (352)
T ss_pred             eeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence            8778999999999999999998899999864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=100.00  E-value=4.7e-32  Score=245.31  Aligned_cols=304  Identities=25%  Similarity=0.360  Sum_probs=239.4

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |+++++...     +..+.+.+++.+.    |.++++||+||+.++++|+.|+....|.........++...++++.|+|
T Consensus         1 ~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v   71 (309)
T cd05289           1 MKAVRIHEY-----GGPEVLELADVPT----PEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVV   71 (309)
T ss_pred             CceEEEccc-----CCccceeecccCC----CCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEE
Confidence            467776643     2334566766644    5789999999999999999999988764321111222333445889999


Q ss_pred             EEeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      +.+|+++..+++||+|+..     .|+|++|+.++...++..   |+++++.. ++.+++.+.+|++++....++.+|++
T Consensus        72 ~~~G~~~~~~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~---p~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~  147 (309)
T cd05289          72 VAVGPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALK---PANLSFEE-AAALPLAGLTAWQALFELGGLKAGQT  147 (309)
T ss_pred             EeeCCCCCCCCCCCEEEEccCCCCCCcceeEEEecHHHhccC---CCCCCHHH-HHhhhHHHHHHHHHHHhhcCCCCCCE
Confidence            9999999999999999932     589999999999877554   99999988 78889999999999987788999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhH
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKML  247 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~  247 (356)
                      |+|+|++|++|++++++++..|++|++++.++ +.+.++ .+|...+++... .++.+   ...++++|.++||+|+...
T Consensus       148 vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~-~~g~~~~~~~~~-~~~~~---~~~~~~~d~v~~~~~~~~~  221 (309)
T cd05289         148 VLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLR-SLGADEVIDYTK-GDFER---AAAPGGVDAVLDTVGGETL  221 (309)
T ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHH-HcCCCEEEeCCC-Cchhh---ccCCCCceEEEECCchHHH
Confidence            99999999999999999999999999988777 888887 899877887664 33433   2234579999999999988


Q ss_pred             HHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEE
Q 042784          248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIY  327 (356)
Q Consensus       248 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~  327 (356)
                      ..++++++++|+++.+|......          .  ..+.+++.+........    .+.+.+++++++++.+.+.+++.
T Consensus       222 ~~~~~~l~~~g~~v~~g~~~~~~----------~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  285 (309)
T cd05289         222 ARSLALVKPGGRLVSIAGPPPAE----------Q--AAKRRGVRAGFVFVEPD----GEQLAELAELVEAGKLRPVVDRV  285 (309)
T ss_pred             HHHHHHHhcCcEEEEEcCCCcch----------h--hhhhccceEEEEEeccc----HHHHHHHHHHHHCCCEEEeeccE
Confidence            99999999999999998754310          0  22445566655543221    46788899999999998887789


Q ss_pred             eChhhHHHHHHHHHcCCCcceEEE
Q 042784          328 YGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       328 ~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      |+++++.++++.+.+++..+|+|+
T Consensus       286 ~~~~~~~~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         286 FPLEDAAEAHERLESGHARGKVVL  309 (309)
T ss_pred             EcHHHHHHHHHHHHhCCCCCcEeC
Confidence            999999999999998887888874

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=4.6e-32  Score=248.21  Aligned_cols=299  Identities=20%  Similarity=0.209  Sum_probs=237.9

Q ss_pred             eeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEE
Q 042784           14 KEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIAR   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~   93 (356)
                      |+++++..+       +.+++++.+.    |.+.+++|+||+.++++|+.|.....|....   ..+|...++|++|+|+
T Consensus         1 ~~~~~~~~~-------~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~---~~~p~~~g~e~~G~v~   66 (330)
T cd08245           1 KAAVVHAAG-------GPLEPEEVPV----PEPGPGEVLIKIEACGVCHTDLHAAEGDWGG---SKYPLVPGHEIVGEVV   66 (330)
T ss_pred             CeEEEecCC-------CCceEEeccC----CCCCCCeEEEEEEEEeccHHHHHHHcCCCCC---CCCCcccCccceEEEE
Confidence            456666443       4788888866    6689999999999999999999988865422   1223334458999999


Q ss_pred             EeccCCCCCCCCCEEEe------------------------------ccCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           94 VIRSKDSKYSDGDIVLR------------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        94 ~vg~~v~~~~~Gd~V~~------------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      .+|++++++++||+|++                              ..|+|++|+.++.+.+..+   |+++++++ ++
T Consensus        67 ~~g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~---p~~~~~~~-~~  142 (330)
T cd08245          67 EVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLL---PDGLPLAQ-AA  142 (330)
T ss_pred             EECCCCcccccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEEC---CCCCCHHH-hh
Confidence            99999999999999973                              1478999999999887555   99999998 78


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      .+.+.+++||+++.. .++.++++|+|+|+ |++|++++++|+..|++|+++++++++.+.++ ++|++.++++.. .+.
T Consensus       143 ~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~-g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~  218 (330)
T cd08245         143 PLLCAGITVYSALRD-AGPRPGERVAVLGI-GGLGHLAVQYARAMGFETVAITRSPDKRELAR-KLGADEVVDSGA-ELD  218 (330)
T ss_pred             hhhhhHHHHHHHHHh-hCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhCCcEEeccCC-cch
Confidence            899999999999965 78999999999975 88999999999999999999999999999997 899888887654 222


Q ss_pred             HHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD  302 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
                      ...    ..+++|+++||++. .....++++++++|+++.++......       .......++.++.++.++....   
T Consensus       219 ~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---  284 (330)
T cd08245         219 EQA----AAGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPP-------FSPDIFPLIMKRQSIAGSTHGG---  284 (330)
T ss_pred             HHh----ccCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCc-------cccchHHHHhCCCEEEEeccCC---
Confidence            222    22479999999775 67889999999999999998653311       1112233566777777765532   


Q ss_pred             hHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          303 RFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       303 ~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                        ...++++++++.++.+.+ ....+++++++++++.+.+++..||+|+
T Consensus       285 --~~~~~~~~~ll~~~~l~~-~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         285 --RADLQEALDFAAEGKVKP-MIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             --HHHHHHHHHHHHcCCCcc-eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence              356788899999999876 4468999999999999999998899875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=1.3e-31  Score=243.80  Aligned_cols=314  Identities=22%  Similarity=0.280  Sum_probs=250.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCC-CCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIP-DHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~-~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      |++++++..     +.+..+++.+.+     |.+. +++++||+.++++|+.|.....|.......++..+|+  +++|+
T Consensus         1 ~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~--e~~G~   68 (323)
T cd08241           1 MKAVVCKEL-----GGPEDLVLEEVP-----PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGS--EVAGV   68 (323)
T ss_pred             CeEEEEecC-----CCcceeEEecCC-----CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccc--eeEEE
Confidence            456676643     234567776652     3344 6999999999999999998877643222223344555  88899


Q ss_pred             EEEeccCCCCCCCCCEEEec---cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEE
Q 042784           92 ARVIRSKDSKYSDGDIVLRA---FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNV  168 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~V  168 (356)
                      |+.+|+++..+++||+|+ +   .|++++|+.++.+.++..   |++++..+ ++++...+.+|++++....++.++++|
T Consensus        69 v~~~g~~~~~~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~i---p~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~v  143 (323)
T cd08241          69 VEAVGEGVTGFKVGDRVV-ALTGQGGFAEEVVVPAAAVFPL---PDGLSFEE-AAALPVTYGTAYHALVRRARLQPGETV  143 (323)
T ss_pred             EEEeCCCCCCCCCCCEEE-EecCCceeEEEEEcCHHHceeC---CCCCCHHH-HhhhhhHHHHHHHHHHHhcCCCCCCEE
Confidence            999999999999999999 5   579999999998877554   89999888 688999999999999877889999999


Q ss_pred             EEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhH
Q 042784          169 FVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKML  247 (356)
Q Consensus       169 lV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~  247 (356)
                      +|+|++|++|++++++|+..|++|++++.++++.+.++ .+|+..+++... .++.+.+.+.++ +++|.++||+|...+
T Consensus       144 li~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~~~~g~~~~  221 (323)
T cd08241         144 LVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR-ALGADHVIDYRD-PDLRERVKALTGGRGVDVVYDPVGGDVF  221 (323)
T ss_pred             EEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH-HcCCceeeecCC-ccHHHHHHHHcCCCCcEEEEECccHHHH
Confidence            99999999999999999999999999999999999998 789887787765 567778888764 589999999999888


Q ss_pred             HHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccch----HHHHHHHHHHHHHcCCeeee
Q 042784          248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDR----FADFTVEMESYIKEGKIRSK  323 (356)
Q Consensus       248 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~g~i~~~  323 (356)
                      ..++++++++|+++.+|......       ........+.+++++.+.....+...    ..+.++++++++.++.+.+.
T Consensus       222 ~~~~~~~~~~g~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (323)
T cd08241         222 EASLRSLAWGGRLLVIGFASGEI-------PQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPH  294 (323)
T ss_pred             HHHHHhhccCCEEEEEccCCCCc-------CcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcccc
Confidence            89999999999999998743311       00112234567888888765543322    23667889999999999887


Q ss_pred             eeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          324 HVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       324 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                      ++..|+++++.++++.+.++...+|++++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~vvv~  323 (323)
T cd08241         295 VSAVFPLEQAAEALRALADRKATGKVVLT  323 (323)
T ss_pred             cceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence            77899999999999999888888888863

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.5e-31  Score=245.29  Aligned_cols=312  Identities=24%  Similarity=0.342  Sum_probs=244.3

Q ss_pred             CCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCE
Q 042784           28 TSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDI  107 (356)
Q Consensus        28 ~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~  107 (356)
                      .++.+.+.+.+.    |.+.+++|+||+.++++|+.|.....|........+..+|  ++++|+|+.+|+++.++++||+
T Consensus        10 ~~~~~~~~~~~~----~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g--~e~~G~v~~~g~~~~~~~~G~~   83 (337)
T cd08275          10 GLDKLKVEKEAL----PEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPG--FECAGTVEAVGEGVKDFKVGDR   83 (337)
T ss_pred             CccceEEEecCC----CCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCc--ceeEEEEEEECCCCcCCCCCCE
Confidence            345788877654    5688999999999999999999988764322212233444  4889999999999999999999


Q ss_pred             EEecc---CCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHH
Q 042784          108 VLRAF---LPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQL  184 (356)
Q Consensus       108 V~~~~---g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~l  184 (356)
                      |+ ++   |+|++|+.++.+.+.+.   |++++.++ ++.+.+.+.+||+++...+++++|++|+|+|++|++|++++++
T Consensus        84 V~-~~~~~~~~~~~~~~~~~~~~~i---p~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~  158 (337)
T cd08275          84 VM-GLTRFGGYAEVVNVPADQVFPL---PDGMSFEE-AAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQL  158 (337)
T ss_pred             EE-EecCCCeeeeEEEecHHHeEEC---CCCCCHHH-HhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHH
Confidence            99 53   89999999998887554   99999988 7889999999999998888999999999999999999999999


Q ss_pred             HHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEE
Q 042784          185 AKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       185 a~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~  263 (356)
                      |+.. +..++... .+++.+.++ .+|.+.++++.. .++.+.++..+++++|+++||+|+.....++++++++|+++.+
T Consensus       159 a~~~~~~~~~~~~-~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~  235 (337)
T cd08275         159 CKTVPNVTVVGTA-SASKHEALK-ENGVTHVIDYRT-QDYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVY  235 (337)
T ss_pred             HHHccCcEEEEeC-CHHHHHHHH-HcCCcEEeeCCC-CcHHHHHHHHhCCCceEEEECCcHHHHHHHHHhhccCcEEEEE
Confidence            9998 44444332 455778887 799988888776 6777788877767899999999998888999999999999999


Q ss_pred             eccccccccccc---------ccchhhhhhhhccceEEEEEecccccc---hHHHHHHHHHHHHHcCCeeeeeeEEeChh
Q 042784          264 GMISQYNKVWTE---------RDGVRNLLNMIGKEVKMEGFMIGSHMD---RFADFTVEMESYIKEGKIRSKHVIYYGVE  331 (356)
Q Consensus       264 g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~g~i~~~~~~~~~~~  331 (356)
                      |...........         .........++.+++++.++.......   .....+.++++++.++.+.+..+..|+++
T Consensus       236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (337)
T cd08275         236 GAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPKIDSVFPFE  315 (337)
T ss_pred             eecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCceeeEEcHH
Confidence            875432100000         000112234577888888876543221   22345788899999999988777889999


Q ss_pred             hHHHHHHHHHcCCCcceEEEEe
Q 042784          332 SFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       332 ~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +++++++.+.++...+|+++++
T Consensus       316 ~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         316 EVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             HHHHHHHHHHcCCCcceEEEeC
Confidence            9999999999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.7e-31  Score=240.41  Aligned_cols=272  Identities=20%  Similarity=0.216  Sum_probs=216.7

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+|+...      +.++.+++++++.    |.+.+++|+|||.++++|+.|.....|.... ...|..+|  .+++|+|
T Consensus         1 ~~~~~~~~------~~~~~~~~~~~~~----p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G--~e~~G~V   67 (306)
T cd08258           1 MKALVKTG------PGPGNVELREVPE----PEPGPGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLG--HEFSGTI   67 (306)
T ss_pred             CeeEEEec------CCCCceEEeecCC----CCCCCCeEEEEEEEEEechhhHHHHcCCCCc-CCCCeeec--cceEEEE
Confidence            45676553      2346789988865    7789999999999999999999888764321 12233444  4889999


Q ss_pred             EEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +.+|++++.+++||+|+.-                              .|+|++|+.++.+.++++   |+++++++ +
T Consensus        68 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l---p~~~~~~~-a  143 (306)
T cd08258          68 VEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHEL---PENLSLEA-A  143 (306)
T ss_pred             EEECCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEEC---cCCCCHHH-H
Confidence            9999999999999999831                              389999999999888555   99999988 4


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe--CChHHHHHHHHHhCCCceeecCCh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST--GSDDNVKLLKEEFGYDDAFNYNSE  220 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~--~s~~~~~~~~~~~g~~~v~~~~~~  220 (356)
                      + ++..+.+||+++...++++++++|+|.| +|++|.+++++|+..|++|++++  .++++.++++ ++|++++ ++.. 
T Consensus       144 a-~~~~~~~a~~~l~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~-~~g~~~~-~~~~-  218 (306)
T cd08258         144 A-LTEPLAVAVHAVAERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAK-ELGADAV-NGGE-  218 (306)
T ss_pred             H-hhchHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHH-HhCCccc-CCCc-
Confidence            4 8888999999998888999999999977 69999999999999999988763  3455777777 8999877 7765 


Q ss_pred             hhHHHHHHHHCC-CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecc
Q 042784          221 MSFDAALTKYFP-NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIG  298 (356)
Q Consensus       221 ~~~~~~i~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (356)
                      .++.+.+.+.++ +++|++|||+|. ..+...+++++++|+++.+|.....       ....+...++.+++++.++..+
T Consensus       219 ~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-------~~~~~~~~~~~~~~~i~g~~~~  291 (306)
T cd08258         219 EDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPL-------AASIDVERIIQKELSVIGSRSS  291 (306)
T ss_pred             CCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCC-------CcccCHHHHhhcCcEEEEEecC
Confidence            678888887764 589999999975 5888999999999999999986521       0122445567799999998876


Q ss_pred             cccchHHHHHHHHHHHHHcC
Q 042784          299 SHMDRFADFTVEMESYIKEG  318 (356)
Q Consensus       299 ~~~~~~~~~l~~~~~~~~~g  318 (356)
                      +.     ++++++++++++|
T Consensus       292 ~~-----~~~~~~~~~~~~~  306 (306)
T cd08258         292 TP-----ASWETALRLLASG  306 (306)
T ss_pred             ch-----HhHHHHHHHHhcC
Confidence            53     4578888888765

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=100.00  E-value=1.8e-31  Score=239.08  Aligned_cols=284  Identities=21%  Similarity=0.298  Sum_probs=232.2

Q ss_pred             CcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEEecc--CCeeeEEeecCCcc
Q 042784           49 HHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAF--LPVAEYSLLPCDLL  126 (356)
Q Consensus        49 ~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~~--g~~a~~~~v~~~~~  126 (356)
                      +||+||+.++++|++|++...|..   ...+..+|  ++++|+|+++|+++.++++||+|+ ++  |+|++|+.++.+.+
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~---~~~~~~~g--~e~~G~v~~~g~~~~~~~~Gd~V~-~~~~g~~~~~~~~~~~~~   74 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL---PGDETPLG--LECSGIVTRVGSGVTGLKVGDRVM-GLAPGAFATHVRVDARLV   74 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC---CCCCCccc--eeeeEEEEeecCCccCCCCCCEEE-EEecCcccceEEechhhe
Confidence            589999999999999999887643   12233444  589999999999999999999999 54  89999999999887


Q ss_pred             cccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Q 042784          127 TRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK  206 (356)
Q Consensus       127 ~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~  206 (356)
                      +..   |+++++.+ ++.+++++.++|+++.+..++++|++|+|+|++|++|++++++++..|++|++++.++++.+.++
T Consensus        75 ~~~---p~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~  150 (293)
T cd05195          75 VKI---PDSLSFEE-AATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLR  150 (293)
T ss_pred             EeC---CCCCCHHH-HhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            555   89999988 78888999999999988889999999999999999999999999999999999998889999998


Q ss_pred             HHhC--CCceeecCChhhHHHHHHHHC-CCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhh
Q 042784          207 EEFG--YDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLL  283 (356)
Q Consensus       207 ~~~g--~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  283 (356)
                       .+|  ++.++++.. .++.+.+++.+ ++++|.++||+|+..+..++++++++|+++.+|......      ..... .
T Consensus       151 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~------~~~~~-~  221 (293)
T cd05195         151 -ELGGPVDHIFSSRD-LSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILS------NSKLG-M  221 (293)
T ss_pred             -HhCCCcceEeecCc-hhHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhcccCceEEEeecccccc------CCccc-h
Confidence             677  677788765 57778888876 458999999999999999999999999999998754311      00011 1


Q ss_pred             hhhccceEEEEEeccccc----chHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          284 NMIGKEVKMEGFMIGSHM----DRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      ..+.+++.+....+....    ....+.+.++++++.++.+.+..+..+++++++++++.+..++..+|+|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         222 RPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             hhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence            224456666665544321    12345678899999999998888888999999999999998888888874

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=4.9e-31  Score=239.96  Aligned_cols=299  Identities=24%  Similarity=0.279  Sum_probs=225.8

Q ss_pred             CCCCe--EEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCc--cCCCccCceeeeeEEEEEeccCCCCCC
Q 042784           28 TSDHL--KLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLY--FPQFNLNQVILAFGIARVIRSKDSKYS  103 (356)
Q Consensus        28 ~~~~~--~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~--~~~~~~g~~~~~~G~v~~vg~~v~~~~  103 (356)
                      ++.++  ++++.++    |.+.++||+|++.++++|+.|.+...|......  ..+..+|  +|+.|+|+++|+++..++
T Consensus         8 ~~~~~~~~~~~~~~----~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g--~e~~G~v~~~G~~v~~~~   81 (319)
T cd08267           8 SPEVLLLLEVEVPI----PTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPG--MDFAGEVVAVGSGVTRFK   81 (319)
T ss_pred             ChhhhhhccccCCC----CCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCccc--ceeeEEEEEeCCCCCCCC
Confidence            33444  6776654    678999999999999999999998876432110  1223344  488999999999999999


Q ss_pred             CCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHH
Q 042784          104 DGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVG  178 (356)
Q Consensus       104 ~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG  178 (356)
                      +||+|+..     .|+|++|+.++.+.++..   |++++.++ ++.+++.+.+||+++....++++|++|+|+|++|++|
T Consensus        82 ~Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~i---p~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g  157 (319)
T cd08267          82 VGDEVFGRLPPKGGGALAEYVVAPESGLAKK---PEGVSFEE-AAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVG  157 (319)
T ss_pred             CCCEEEEeccCCCCceeeEEEEechhheEEC---CCCCCHHH-HHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHH
Confidence            99999932     289999999999887554   99999988 7899999999999998888899999999999999999


Q ss_pred             HHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCchh--hHHHHHHhcc
Q 042784          179 MFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGK--MLEAVLNHVN  255 (356)
Q Consensus       179 ~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~--~~~~~~~~l~  255 (356)
                      ++++++|+..|++|++++.+ ++.+.++ ++|.+.++++.. .++.   ...+ ++++|++++|+|+.  .....+..++
T Consensus       158 ~~~~~la~~~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~-~~~~---~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~  231 (319)
T cd08267         158 TFAVQIAKALGAHVTGVCST-RNAELVR-SLGADEVIDYTT-EDFV---ALTAGGEKYDVIFDAVGNSPFSLYRASLALK  231 (319)
T ss_pred             HHHHHHHHHcCCEEEEEeCH-HHHHHHH-HcCCCEeecCCC-CCcc---hhccCCCCCcEEEECCCchHHHHHHhhhccC
Confidence            99999999999999998854 8888887 899988887664 3333   3333 45899999999853  3344444599


Q ss_pred             cCCEEEEEecccccccccccccchhhhhh-hhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHH
Q 042784          256 VHARIILCGMISQYNKVWTERDGVRNLLN-MIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFL  334 (356)
Q Consensus       256 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~  334 (356)
                      ++|+++.+|........   ......... ...+.+..  ....   .. .+.+.++++++.++.+.+.++++|++++++
T Consensus       232 ~~g~~i~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~---~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~  302 (319)
T cd08267         232 PGGRYVSVGGGPSGLLL---VLLLLPLTLGGGGRRLKF--FLAK---PN-AEDLEQLAELVEEGKLKPVIDSVYPLEDAP  302 (319)
T ss_pred             CCCEEEEeccccccccc---cccccchhhccccceEEE--EEec---CC-HHHHHHHHHHHHCCCeeeeeeeEEcHHHHH
Confidence            99999999875432100   000000111 11122222  1111   11 567888999999999998888899999999


Q ss_pred             HHHHHHHcCCCcceEEE
Q 042784          335 ESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       335 ~a~~~~~~~~~~gkvvi  351 (356)
                      +|++.+.+++..+|+++
T Consensus       303 ~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         303 EAYRRLKSGRARGKVVI  319 (319)
T ss_pred             HHHHHHhcCCCCCcEeC
Confidence            99999998888888874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>smart00829 PKS_ER Enoylreductase

Probab=100.00  E-value=3.3e-30  Score=230.62  Aligned_cols=280  Identities=22%  Similarity=0.317  Sum_probs=227.0

Q ss_pred             EEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEEec-cCCeeeEEeecCCcccccCC
Q 042784           53 VETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRA-FLPVAEYSLLPCDLLTRKLD  131 (356)
Q Consensus        53 Vkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~-~g~~a~~~~v~~~~~~~~i~  131 (356)
                      ||+.++++|+.|.+...|.+    ..+..+|+  +++|+|+.+|+++..+++||+|+.. .|+|++|+.++.+.++..  
T Consensus         2 i~v~~~~i~~~d~~~~~g~~----~~~~~~g~--e~~G~v~~~G~~~~~~~~Gd~V~~~~~g~~~~~~~~~~~~~~~~--   73 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLL----PGEAVLGG--ECAGVVTRVGPGVTGLAVGDRVMGLAPGSFATYVRTDARLVVPI--   73 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCC----CCCCCCCc--eeEEEEEeeCCCCcCCCCCCEEEEEcCCceeeEEEccHHHeEEC--
Confidence            79999999999999887642    22345554  8899999999999999999999932 589999999999887555  


Q ss_pred             CCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC
Q 042784          132 PASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY  211 (356)
Q Consensus       132 ~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~  211 (356)
                       |+++++++ ++++.+.+.++|+++.+...+.+|++|+|+|++|++|++++++++..|++|+++++++++.+.++ ++|+
T Consensus        74 -p~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~  150 (288)
T smart00829       74 -PDGLSFEE-AATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLR-ELGI  150 (288)
T ss_pred             -CCCCCHHH-HHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCC
Confidence             99999998 78999999999999977888999999999999999999999999999999999999999999997 8998


Q ss_pred             --CceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhcc
Q 042784          212 --DDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGK  288 (356)
Q Consensus       212 --~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  288 (356)
                        +.++++.. .++.+.+.+..+ +++|.++|++|+..+..++++++++|+++.+|......     . ...+... +.+
T Consensus       151 ~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~-----~-~~~~~~~-~~~  222 (288)
T smart00829      151 PDDHIFSSRD-LSFADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRD-----N-SQLGMAP-FRR  222 (288)
T ss_pred             ChhheeeCCC-ccHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCcc-----c-cccchhh-hcC
Confidence              77888776 567777877664 48999999999888889999999999999998753211     0 0111222 456


Q ss_pred             ceEEEEEeccccc---chHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          289 EVKMEGFMIGSHM---DRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       289 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      ++++....+....   ....+.+.++++++.++.+.+...+.|+++++.++++.+..++..+|+++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      223 NVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             CceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence            6776666543211   12335577888999999888766678999999999999998887788774

Enoylreductase in Polyketide synthases.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.97  E-value=7.6e-30  Score=227.92  Aligned_cols=228  Identities=17%  Similarity=0.164  Sum_probs=183.4

Q ss_pred             eeeeeEEEEEeccCCC------CCCCCCEEEec------------------------------------cCCeeeEEeec
Q 042784           85 VILAFGIARVIRSKDS------KYSDGDIVLRA------------------------------------FLPVAEYSLLP  122 (356)
Q Consensus        85 ~~~~~G~v~~vg~~v~------~~~~Gd~V~~~------------------------------------~g~~a~~~~v~  122 (356)
                      |+|++|+|+++|++|+      .+++||||++.                                    .|+|+||++++
T Consensus         3 GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~v~   82 (280)
T TIGR03366         3 GHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHLP   82 (280)
T ss_pred             CcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEEec
Confidence            3489999999999999      89999999730                                    27899999999


Q ss_pred             CC-cccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChH
Q 042784          123 CD-LLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDD  200 (356)
Q Consensus       123 ~~-~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~  200 (356)
                      ++ .++++   |+++++++ ++.+.+.+.|||+++.. ....+|++|+|+|+ |++|++++|+||.+|++ |++++.+++
T Consensus        83 ~~~~~~~l---P~~~~~~~-aa~l~~~~~ta~~al~~-~~~~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366        83 AGTAIVPV---PDDLPDAV-AAPAGCATATVMAALEA-AGDLKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPD  156 (280)
T ss_pred             CCCcEEEC---CCCCCHHH-hhHhhhHHHHHHHHHHh-ccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            87 46444   99999998 78889999999999964 45569999999986 99999999999999995 999988999


Q ss_pred             HHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccc
Q 042784          201 NVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDG  278 (356)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  278 (356)
                      |.++++ ++|++.++++.+   ..+.+++++ +.++|++||++|.. .++.++++++++|+++.+|......      ..
T Consensus       157 r~~~a~-~~Ga~~~i~~~~---~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~------~~  226 (280)
T TIGR03366       157 RRELAL-SFGATALAEPEV---LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGG------PV  226 (280)
T ss_pred             HHHHHH-HcCCcEecCchh---hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCC------ce
Confidence            999998 899998888653   345566666 45899999999875 7899999999999999999753211      11


Q ss_pred             hhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcC--Ce--eeeeeEEeChhhH
Q 042784          279 VRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEG--KI--RSKHVIYYGVESF  333 (356)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g--~i--~~~~~~~~~~~~~  333 (356)
                      ..+...++.|++++.++...+     .+.++++++++.++  ++  ++.++++|+++|+
T Consensus       227 ~i~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       227 ALDPEQVVRRWLTIRGVHNYE-----PRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             eeCHHHHHhCCcEEEecCCCC-----HHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            234556788999998875432     24578888999874  33  3567888999873

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=2.4e-28  Score=216.99  Aligned_cols=234  Identities=26%  Similarity=0.303  Sum_probs=191.7

Q ss_pred             cEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEEec------------------
Q 042784           50 HVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRA------------------  111 (356)
Q Consensus        50 eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~------------------  111 (356)
                      ||+|||.++++|+.|.....|........+..+|  ++++|+|+++|++++.+++||+|+..                  
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G--~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~   78 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILG--HEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGG   78 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccc--cccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCC
Confidence            6899999999999999998875431112234445  48999999999999999999999931                  


Q ss_pred             -------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHH
Q 042784          112 -------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQL  184 (356)
Q Consensus       112 -------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~l  184 (356)
                             .|++++|+.++.+.++.+   |+++++++ ++.++.++.+||+++.....+.++++|+|+|+++ +|++++++
T Consensus        79 ~~~~~~~~g~~~~~~~v~~~~~~~i---p~~~~~~~-a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~  153 (271)
T cd05188          79 GILGEGLDGGFAEYVVVPADNLVPL---PDGLSLEE-AALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQL  153 (271)
T ss_pred             CEeccccCCcceEEEEechHHeEEC---CCCCCHHH-hhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHH
Confidence                   478999999999888555   99999998 7888899999999998877779999999999855 99999999


Q ss_pred             HHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEE
Q 042784          185 AKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       185 a~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~  263 (356)
                      ++..|.+|+++++++++.+.++ .+|++.++++.+ .++.+.+....++++|+++++++. ..+..++++++++|+++.+
T Consensus       154 a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         154 AKAAGARVIVTDRSDEKLELAK-ELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             HHHcCCeEEEEcCCHHHHHHHH-HhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEE
Confidence            9999999999999999999998 889888888765 455555552234689999999998 7889999999999999999


Q ss_pred             ecccccccccccccchhhhhhhhccceEEEEEeccc
Q 042784          264 GMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS  299 (356)
Q Consensus       264 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (356)
                      |......       ........+.+++++.++....
T Consensus       232 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  260 (271)
T cd05188         232 GGTSGGP-------PLDDLRRLLFKELTIIGSTGGT  260 (271)
T ss_pred             ccCCCCC-------CcccHHHHHhcceEEEEeecCC
Confidence            8765421       1112345577889998887654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.97  E-value=6.3e-29  Score=239.72  Aligned_cols=303  Identities=20%  Similarity=0.262  Sum_probs=247.4

Q ss_pred             CCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccC------CCccCceeeeeEEEEEeccCCC
Q 042784           27 PTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFP------QFNLNQVILAFGIARVIRSKDS  100 (356)
Q Consensus        27 ~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~------~~~~g~~~~~~G~v~~vg~~v~  100 (356)
                      +.-..++|.+.+.... .+..++.=+--|.|+.||..|+....|.......|      ...+|.  |++|+         
T Consensus      1424 GDlsSlrWies~~~~a-~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGm--EFsGR--------- 1491 (2376)
T KOG1202|consen 1424 GDLSSLRWIESPLRHA-QPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGM--EFSGR--------- 1491 (2376)
T ss_pred             ccccceeeeecchhhc-CCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheece--eeccc---------
Confidence            3456778888765421 24467777889999999999999998865333211      123333  55554         


Q ss_pred             CCCCCCEEEecc---CCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChH
Q 042784          101 KYSDGDIVLRAF---LPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGV  177 (356)
Q Consensus       101 ~~~~Gd~V~~~~---g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~v  177 (356)
                       .+-|.||+ +.   -++++.+.++.+.+..+   |.+.++++ |++.|+-|.|||+||...+..++|+++|||+++|++
T Consensus      1492 -d~~GrRvM-~mvpAksLATt~l~~rd~lWev---P~~WTlee-AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGV 1565 (2376)
T KOG1202|consen 1492 -DASGRRVM-GMVPAKSLATTVLASRDFLWEV---PSKWTLEE-ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGV 1565 (2376)
T ss_pred             -cCCCcEEE-EeeehhhhhhhhhcchhhhhhC---Ccccchhh-cccCceEeeeehhhhhhhccccCCcEEEEecCCCch
Confidence             56799999 54   67899999998888665   99999999 899999999999999989999999999999999999


Q ss_pred             HHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC---CCceeecCChhhHHHHHHHHC-CCCceEEEECCchhhHHHHHHh
Q 042784          178 GMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG---YDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKMLEAVLNH  253 (356)
Q Consensus       178 G~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g---~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~~~~~~~~  253 (356)
                      |+++|.+|.+.|++|+.++.|.++++++.+.|.   ...+-|.++ .+|+..+...| |+|+|+|++....+.++.+++|
T Consensus      1566 GQAAIaiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd-tsFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRC 1644 (2376)
T KOG1202|consen 1566 GQAAIAIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRD-TSFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRC 1644 (2376)
T ss_pred             hHHHHHHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhccccccc-ccHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHH
Confidence            999999999999999999999999999987554   345556666 78998888877 6699999999999999999999


Q ss_pred             cccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHH----cCCeeeeeeEEeC
Q 042784          254 VNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIK----EGKIRSKHVIYYG  329 (356)
Q Consensus       254 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~g~i~~~~~~~~~  329 (356)
                      |+.+|++..+|...-++       +.......|.+|.+++|.-+.+..+.-.+...++..+++    +|.++|+.+.+|+
T Consensus      1645 La~~GRFLEIGKfDLSq-------NspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~ 1717 (2376)
T KOG1202|consen 1645 LALHGRFLEIGKFDLSQ-------NSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFH 1717 (2376)
T ss_pred             HHhcCeeeeecceeccc-------CCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceecccccccc
Confidence            99999999999755422       223566789999999999888777655555555555554    5678999999999


Q ss_pred             hhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          330 VESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       330 ~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      -+++++||++|.+++..||||+++..
T Consensus      1718 ~~qvE~AFRfMasGKHIGKVvikvr~ 1743 (2376)
T KOG1202|consen 1718 GQQVEDAFRFMASGKHIGKVVIKVRA 1743 (2376)
T ss_pred             HHHHHHHHHHHhccCccceEEEEEcc
Confidence            99999999999999999999999853

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.96  E-value=3.3e-27  Score=210.80  Aligned_cols=253  Identities=23%  Similarity=0.242  Sum_probs=196.3

Q ss_pred             CCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEEeccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHH
Q 042784           74 GLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAW  153 (356)
Q Consensus        74 ~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~  153 (356)
                      +..+-++|...++|++|+|+++|++++++++||+|+ ++++|++|+.++.+.++.+   |+++++++ ++.+ +.+++||
T Consensus        14 ~~~~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~-~~~~~~~~~~v~~~~~~~i---p~~l~~~~-aa~~-~~~~ta~   87 (277)
T cd08255          14 GTEKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVF-CFGPHAERVVVPANLLVPL---PDGLPPER-AALT-ALAATAL   87 (277)
T ss_pred             cCccCcCCcccCcceeEEEEEeCCCCCCCCCCCEEE-ecCCcceEEEcCHHHeeEC---cCCCCHHH-hHHH-HHHHHHH
Confidence            333445555666699999999999999999999999 8889999999999887555   99999988 5666 8899999


Q ss_pred             HHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhC-CCceeecCChhhHHHHHHHHC
Q 042784          154 VGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFG-YDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       154 ~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g-~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      +++. .+++++|++++|+|+ |++|++++++|+.+|++ |+++++++++.++++ ++| ++.++++..  .      ...
T Consensus        88 ~~~~-~~~~~~g~~vlI~g~-g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~--~------~~~  156 (277)
T cd08255          88 NGVR-DAEPRLGERVAVVGL-GLVGLLAAQLAKAAGAREVVGVDPDAARRELAE-ALGPADPVAADTA--D------EIG  156 (277)
T ss_pred             HHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH-HcCCCccccccch--h------hhc
Confidence            9985 788999999999974 99999999999999997 999999999999888 888 454444321  1      123


Q ss_pred             CCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc-------h
Q 042784          232 PNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD-------R  303 (356)
Q Consensus       232 ~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  303 (356)
                      ++++|++|||++. .....++++++++|+++.+|.....      . . .....+..+.+++.+........       .
T Consensus       157 ~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (277)
T cd08255         157 GRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLK------P-L-LLGEEFHFKRLPIRSSQVYGIGRYDRPRRWT  228 (277)
T ss_pred             CCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCC------c-c-ccHHHHHhccCeEEeeccccccccccccccc
Confidence            4589999999875 5788999999999999999875431      0 0 11122344555666655433211       1


Q ss_pred             HHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcC-CCcceEEE
Q 042784          304 FADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSS-SNIGKVVI  351 (356)
Q Consensus       304 ~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi  351 (356)
                      ..+.++++++++.++.+++.+.++|+++++++|++.+.++ ....|+++
T Consensus       229 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         229 EARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             ccccHHHHHHHHHcCCccccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence            2356888999999999988877889999999999999876 33456653

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.74  E-value=5.5e-17  Score=127.77  Aligned_cols=127  Identities=31%  Similarity=0.478  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC-CceEEEECCc-hhhHHHHHHh
Q 042784          176 GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN-GIDVYLDNVG-GKMLEAVLNH  253 (356)
Q Consensus       176 ~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~-~~d~vld~~g-~~~~~~~~~~  253 (356)
                      ++|++++|+||..|++|++++++++++++++ ++|+++++++++ .++.+.+++++++ ++|+||||+| ...++.++++
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~-~~Ga~~~~~~~~-~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~   78 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK-ELGADHVIDYSD-DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKL   78 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-HTTESEEEETTT-SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH-hhcccccccccc-cccccccccccccccceEEEEecCcHHHHHHHHHH
Confidence            6899999999999999999999999999999 999999999987 7799999999975 9999999999 6799999999


Q ss_pred             cccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHH
Q 042784          254 VNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIK  316 (356)
Q Consensus       254 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (356)
                      ++++|+++.+|....       .....+...++.+++++.++..++     ++.++++++++.
T Consensus        79 l~~~G~~v~vg~~~~-------~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~la  129 (130)
T PF00107_consen   79 LRPGGRIVVVGVYGG-------DPISFNLMNLMFKEITIRGSWGGS-----PEDFQEALQLLA  129 (130)
T ss_dssp             EEEEEEEEEESSTST-------SEEEEEHHHHHHTTEEEEEESSGG-----HHHHHHHHHHHH
T ss_pred             hccCCEEEEEEccCC-------CCCCCCHHHHHhCCcEEEEEccCC-----HHHHHHHHHHhc
Confidence            999999999999762       124457788899999999998776     244566666554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.60  E-value=2.1e-15  Score=118.17  Aligned_cols=122  Identities=25%  Similarity=0.301  Sum_probs=80.8

Q ss_pred             hCCCceeecCChhhHHHHHHHHCCCCceEEEECCc--hhhH-HHHHHhcccCCEEEEEecccccccccccccchhhhhhh
Q 042784          209 FGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG--GKML-EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM  285 (356)
Q Consensus       209 ~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g--~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  285 (356)
                      ||+++++||++ .++      ..++++|+||||+|  .+.+ ..++++| ++|+++.++. ..            .....
T Consensus         1 LGAd~vidy~~-~~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-~~------------~~~~~   59 (127)
T PF13602_consen    1 LGADEVIDYRD-TDF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-DL------------PSFAR   59 (127)
T ss_dssp             CT-SEEEETTC-SHH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-HH------------HHHHH
T ss_pred             CCcCEEecCCC-ccc------cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-cc------------cchhh
Confidence            69999999996 666      33468999999999  6544 6777888 9999998874 10            11111


Q ss_pred             hccceEEEEEeccccc--chHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          286 IGKEVKMEGFMIGSHM--DRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       286 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                      ..+...+....+....  ....+.++++.+++.+|++++.+..+|||+++++|++.+++++..||+|+
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   60 RLKGRSIRYSFLFSVDPNAIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             HHHCHHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             hhcccceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            1111112222222111  22457799999999999999999999999999999999999999999996

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.57  E-value=8.6e-15  Score=111.36  Aligned_cols=78  Identities=18%  Similarity=0.078  Sum_probs=61.8

Q ss_pred             CCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEEec----------------
Q 042784           48 DHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRA----------------  111 (356)
Q Consensus        48 ~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~----------------  111 (356)
                      |+||||||++++||++|++++.|........|+.+|+  |++|+|+++|+++++|++||||+..                
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~Gh--E~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~   78 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGH--EGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRP   78 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-S--EEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCccccc--ceeeeeeeeccccccccccceeeeecccCccCchhhcCCcc
Confidence            6899999999999999999999742233344455555  9999999999999999999999951                


Q ss_pred             -------------cCCeeeEEeecCCccc
Q 042784          112 -------------FLPVAEYSLLPCDLLT  127 (356)
Q Consensus       112 -------------~g~~a~~~~v~~~~~~  127 (356)
                                   .|+|+||+++++++++
T Consensus        79 ~~c~~~~~~g~~~~G~~aey~~v~~~~~~  107 (109)
T PF08240_consen   79 NLCPNPEVLGLGLDGGFAEYVVVPARNLV  107 (109)
T ss_dssp             GGTTTBEETTTSSTCSSBSEEEEEGGGEE
T ss_pred             ccCCCCCEeEcCCCCcccCeEEEehHHEE
Confidence                         2889999999988773

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.34  E-value=3.1e-11  Score=111.47  Aligned_cols=178  Identities=13%  Similarity=0.102  Sum_probs=130.3

Q ss_pred             hhhHHHHHHHhCC-CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHH
Q 042784          149 GFAAWVGIEVLGQ-PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAAL  227 (356)
Q Consensus       149 ~~ta~~~l~~~~~-~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i  227 (356)
                      +...+.++.+..+ .-+|++|+|.|+ |.+|+.+++.++.+|++|++++.++.+.+.++ .+|+. +.+      ..+.+
T Consensus       185 g~s~~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-~~G~~-~~~------~~e~v  255 (413)
T cd00401         185 RESLIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAA-MEGYE-VMT------MEEAV  255 (413)
T ss_pred             chhhHHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-hcCCE-Ecc------HHHHH
Confidence            3445566655433 368999999997 99999999999999999999999999999998 88884 221      12222


Q ss_pred             HHHCCCCceEEEECCchh-hHHHH-HHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHH
Q 042784          228 TKYFPNGIDVYLDNVGGK-MLEAV-LNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA  305 (356)
Q Consensus       228 ~~~~~~~~d~vld~~g~~-~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (356)
                           .++|+||+|+|.. .+... ++.++++|+++.+|...          ...+...+..+++++.+.......    
T Consensus       256 -----~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~----------~eId~~~L~~~el~i~g~~~~~~~----  316 (413)
T cd00401         256 -----KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFD----------VEIDVKGLKENAVEVVNIKPQVDR----  316 (413)
T ss_pred             -----cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCC----------CccCHHHHHhhccEEEEccCCcce----
Confidence                 3589999999986 56655 89999999999998541          224555567778888776543211    


Q ss_pred             HHHH--HHHHHHHcCCe---eeeeeEE-----eChh-hHHHHHHHHHcCCCc-ceEEEEec
Q 042784          306 DFTV--EMESYIKEGKI---RSKHVIY-----YGVE-SFLESLGSLFSSSNI-GKVVIQVK  354 (356)
Q Consensus       306 ~~l~--~~~~~~~~g~i---~~~~~~~-----~~~~-~~~~a~~~~~~~~~~-gkvvi~~~  354 (356)
                      ..+.  +.+.++.+|++   .+.+++.     ++|+ |+.++++.+.++... .|+++.+.
T Consensus       317 ~~~~~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~  377 (413)
T cd00401         317 YELPDGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK  377 (413)
T ss_pred             EEcCCcchhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence            0123  57889999988   4455555     8899 999999999876543 47776653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.28  E-value=1.2e-10  Score=110.36  Aligned_cols=148  Identities=12%  Similarity=0.070  Sum_probs=104.8

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce-eecCCh------------hhHHHHHH
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA-FNYNSE------------MSFDAALT  228 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v-~~~~~~------------~~~~~~i~  228 (356)
                      ..++++|+|.|+ |.+|+++++.|+.+|++|++++.++++++.++ ++|++.+ +|..+.            .++.+..+
T Consensus       162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae-slGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE-SMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            357999999997 99999999999999999999999999999999 8999843 444221            13333333


Q ss_pred             HH-CC--CCceEEEECCchh------h-HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhc-cceEEEEEec
Q 042784          229 KY-FP--NGIDVYLDNVGGK------M-LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIG-KEVKMEGFMI  297 (356)
Q Consensus       229 ~~-~~--~~~d~vld~~g~~------~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  297 (356)
                      +. ..  +++|+||+|+|.+      . .++.++.++++|+++.+|...+.+-    + ...+...++. +++++.++..
T Consensus       240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~----e-~t~~~~~v~~~~gVti~Gv~n  314 (509)
T PRK09424        240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNC----E-LTVPGEVVVTDNGVTIIGYTD  314 (509)
T ss_pred             HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCc----c-cccCccceEeECCEEEEEeCC
Confidence            33 22  4799999999863      4 4899999999999999998543210    0 1112234454 7888888653


Q ss_pred             ccccchHHHHHHHHHHHHHcCCee
Q 042784          298 GSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       298 ~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      ..  .   ++-.+..+++.++.+.
T Consensus       315 ~P--~---~~p~~As~lla~~~i~  333 (509)
T PRK09424        315 LP--S---RLPTQSSQLYGTNLVN  333 (509)
T ss_pred             Cc--h---hHHHHHHHHHHhCCcc
Confidence            21  1   2333467777777654

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.55  E-value=6.5e-07  Score=79.59  Aligned_cols=172  Identities=16%  Similarity=0.222  Sum_probs=102.1

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      .+.+++|++||..|. |+ |..++++++..|.  +|++++.+++..+.+++.   +|...+ .... .++.+ + .+..+
T Consensus        72 ~~~~~~g~~VLDiG~-G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v-~~~~-~d~~~-l-~~~~~  145 (272)
T PRK11873         72 LAELKPGETVLDLGS-GG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRL-GEIEA-L-PVADN  145 (272)
T ss_pred             hccCCCCCEEEEeCC-CC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCE-EEEE-cchhh-C-CCCCC
Confidence            356889999999995 66 8888888888775  799999999998888732   333222 1111 22211 1 12235


Q ss_pred             CceEEEECCc-----h--hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHH
Q 042784          234 GIDVYLDNVG-----G--KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFAD  306 (356)
Q Consensus       234 ~~d~vld~~g-----~--~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (356)
                      .||+|+....     .  ..+..+.+.|+|+|+++..+......       ....    +.+...+.........     
T Consensus       146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~-----  209 (272)
T PRK11873        146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE-------LPEE----IRNDAELYAGCVAGAL-----  209 (272)
T ss_pred             ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC-------CCHH----HHHhHHHHhccccCCC-----
Confidence            7999986532     1  37899999999999999876643311       0001    1111111111111111     


Q ss_pred             HHHHHHHHHHcCCee---eeeeEEeChhhHHHHHHHH--HcCCCcceEEEE
Q 042784          307 FTVEMESYIKEGKIR---SKHVIYYGVESFLESLGSL--FSSSNIGKVVIQ  352 (356)
Q Consensus       307 ~l~~~~~~~~~g~i~---~~~~~~~~~~~~~~a~~~~--~~~~~~gkvvi~  352 (356)
                      ..+++.+++.+..+.   ......++++++.++++.+  .+++..++.+..
T Consensus       210 ~~~e~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  260 (272)
T PRK11873        210 QEEEYLAMLAEAGFVDITIQPKREYRIPDAREFLEDWGIAPGRQLDGYIVS  260 (272)
T ss_pred             CHHHHHHHHHHCCCCceEEEeccceecccHHHHHHHhccccccccCceEEE
Confidence            123455566653333   3333468889999999988  565555555543

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=98.52  E-value=9.4e-06  Score=71.98  Aligned_cols=169  Identities=21%  Similarity=0.273  Sum_probs=110.3

Q ss_pred             eeEEEEEeccCCCCCCCCCEEEeccCCeeeEEeecCCccc----------------------ccCCCCC-CCCccccccc
Q 042784           88 AFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLT----------------------RKLDPAS-GIPFPDYLSS  144 (356)
Q Consensus        88 ~~G~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~----------------------~~i~~P~-~~s~~~~aa~  144 (356)
                      .-|..+++.|+++++.+|.||+ ++-+.++|+.+....+-                      +.-.+|. +-+.++ .-+
T Consensus        35 vWGfA~VveS~~~~i~vGerly-Gy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~~~~e~-~~~  112 (314)
T PF11017_consen   35 VWGFATVVESRHPGIAVGERLY-GYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYDPERED-WQM  112 (314)
T ss_pred             cceEEEEEeeCCCCccCccEEE-eeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCcccCcchhH-HHH
Confidence            4488888999999999999999 88777777766654321                      0000111 011222 223


Q ss_pred             cCchh-hhHHHHHHHhC---CCCCCCEEEEEcCCChHHHHHHHHHH-HCCC-EEEEEeCChHHHHHHHHHhCC-Cceeec
Q 042784          145 LGIPG-FAAWVGIEVLG---QPKSGSNVFVSAAAGGVGMFAGQLAK-LKGC-KVVGSTGSDDNVKLLKEEFGY-DDAFNY  217 (356)
Q Consensus       145 l~~~~-~ta~~~l~~~~---~~~~g~~VlV~g~~g~vG~~~i~la~-~~G~-~V~~~~~s~~~~~~~~~~~g~-~~v~~~  217 (356)
                      |.-++ .|.| ++.+..   +.-..+.|+|.+||+-+++.+...++ ..+. +++.++ |..+..+.+ .+|+ +.|+.|
T Consensus       113 LlrPLf~Tsf-ll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve-~lg~Yd~V~~Y  189 (314)
T PF11017_consen  113 LLRPLFITSF-LLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVE-SLGCYDEVLTY  189 (314)
T ss_pred             HHHHHHHHHH-HHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhh-ccCCceEEeeh
Confidence            33333 3333 332221   12345789999999999999988888 5554 999998 888999998 9998 778888


Q ss_pred             CChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccC-CEEEEEecccc
Q 042784          218 NSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVH-ARIILCGMISQ  268 (356)
Q Consensus       218 ~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~  268 (356)
                      .+       |.++....--+++|..|+. ....+...++.. -..+.+|....
T Consensus       190 d~-------i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th~  235 (314)
T PF11017_consen  190 DD-------IDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATHW  235 (314)
T ss_pred             hh-------hhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccCc
Confidence            64       5555445567899999986 444555555544 35677776544

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.47  E-value=1.7e-06  Score=82.10  Aligned_cols=106  Identities=18%  Similarity=0.220  Sum_probs=80.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce-eecCC------------hhhHHHHHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA-FNYNS------------EMSFDAALTK  229 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v-~~~~~------------~~~~~~~i~~  229 (356)
                      .++++|+|.|+ |.+|++++++++.+|++|++++.++++.+.++ ++|+..+ ++..+            ..++.+...+
T Consensus       162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~-~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~  239 (511)
T TIGR00561       162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME  239 (511)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence            35789999997 99999999999999999999999999999998 7998642 22210            0233333333


Q ss_pred             HC---CCCceEEEECC---chh----hHHHHHHhcccCCEEEEEecccccc
Q 042784          230 YF---PNGIDVYLDNV---GGK----MLEAVLNHVNVHARIILCGMISQYN  270 (356)
Q Consensus       230 ~~---~~~~d~vld~~---g~~----~~~~~~~~l~~~G~~v~~g~~~~~~  270 (356)
                      +.   .+++|++|+|+   |.+    ..++.++.+++++.++.++...+.+
T Consensus       240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn  290 (511)
T TIGR00561       240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGN  290 (511)
T ss_pred             HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCC
Confidence            22   24799999999   642    4567789999999999998766543

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.35  E-value=1.9e-05  Score=73.05  Aligned_cols=99  Identities=20%  Similarity=0.243  Sum_probs=73.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC--
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV--  242 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~--  242 (356)
                      +.+|+|.|+ |.+|+.+++.++.+|++|+++++++++.+.+...++......+.+...+.+.+     ..+|++|+|+  
T Consensus       167 ~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l-----~~aDvVI~a~~~  240 (370)
T TIGR00518       167 PGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAV-----KRADLLIGAVLI  240 (370)
T ss_pred             CceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHH-----ccCCEEEEcccc
Confidence            456999997 99999999999999999999999988888876566654222333323344433     3589999998  


Q ss_pred             -ch--h--hHHHHHHhcccCCEEEEEeccccc
Q 042784          243 -GG--K--MLEAVLNHVNVHARIILCGMISQY  269 (356)
Q Consensus       243 -g~--~--~~~~~~~~l~~~G~~v~~g~~~~~  269 (356)
                       +.  +  .....++.+++++.++.++...+.
T Consensus       241 ~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG  272 (370)
T TIGR00518       241 PGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGG  272 (370)
T ss_pred             CCCCCCcCcCHHHHhcCCCCCEEEEEecCCCC
Confidence             33  2  236777889999999999876553

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.34  E-value=3.3e-06  Score=71.48  Aligned_cols=80  Identities=23%  Similarity=0.395  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC----CceeecCChhhHHHHHHHHCC--CCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY----DDAFNYNSEMSFDAALTKYFP--NGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~----~~v~~~~~~~~~~~~i~~~~~--~~~d~  237 (356)
                      .++.++|+||++|+|.++++.+...|++|+.+.|+.++++.+.++++.    ...+|-.+..+..+.+..+..  +.+|+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            357899999999999999999999999999999999999999989993    344566664565555655442  46999


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ++++.|
T Consensus        85 LvNNAG   90 (246)
T COG4221          85 LVNNAG   90 (246)
T ss_pred             EEecCC
Confidence            999988

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.26  E-value=1.3e-05  Score=74.67  Aligned_cols=106  Identities=18%  Similarity=0.193  Sum_probs=79.8

Q ss_pred             hhhHHHHHHHhCCCC-CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHH
Q 042784          149 GFAAWVGIEVLGQPK-SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAAL  227 (356)
Q Consensus       149 ~~ta~~~l~~~~~~~-~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i  227 (356)
                      ...+|.++.+..++. .|++|+|.|. |.+|..+++.++.+|++|++++.++.+...+. ..|.. +.      ++.+.+
T Consensus       195 ~~s~~~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-~~G~~-v~------~l~eal  265 (425)
T PRK05476        195 GESLLDGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAA-MDGFR-VM------TMEEAA  265 (425)
T ss_pred             HhhhHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-hcCCE-ec------CHHHHH
Confidence            344566665543444 8999999997 99999999999999999999998887776665 55654 22      122222


Q ss_pred             HHHCCCCceEEEECCchh-hHH-HHHHhcccCCEEEEEecccc
Q 042784          228 TKYFPNGIDVYLDNVGGK-MLE-AVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       228 ~~~~~~~~d~vld~~g~~-~~~-~~~~~l~~~G~~v~~g~~~~  268 (356)
                           .++|+|++|+|.. .+. ..+..+++++.++.+|....
T Consensus       266 -----~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        266 -----ELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             -----hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence                 2589999999986 454 67889999999999987653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.22  E-value=2.8e-05  Score=69.67  Aligned_cols=94  Identities=22%  Similarity=0.315  Sum_probs=74.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+.+|+|.|. |.+|..+++.++.+|++|++.+++.++.+.++ ++|+. .+.+   .++.+.+     .++|+||+|++
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-~~G~~-~~~~---~~l~~~l-----~~aDiVI~t~p  219 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARIT-EMGLS-PFHL---SELAEEV-----GKIDIIFNTIP  219 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCe-eecH---HHHHHHh-----CCCCEEEECCC
Confidence            5899999997 99999999999999999999999988888887 78865 2222   2333333     25999999998


Q ss_pred             hhh-HHHHHHhcccCCEEEEEecccc
Q 042784          244 GKM-LEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       244 ~~~-~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ... ....++.+++++.++.++...+
T Consensus       220 ~~~i~~~~l~~~~~g~vIIDla~~pg  245 (296)
T PRK08306        220 ALVLTKEVLSKMPPEALIIDLASKPG  245 (296)
T ss_pred             hhhhhHHHHHcCCCCcEEEEEccCCC
Confidence            653 3566778999999998887654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.21  E-value=2.3e-05  Score=72.63  Aligned_cols=104  Identities=16%  Similarity=0.157  Sum_probs=78.0

Q ss_pred             hhHHHHHHHhCC-CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHH
Q 042784          150 FAAWVGIEVLGQ-PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALT  228 (356)
Q Consensus       150 ~ta~~~l~~~~~-~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~  228 (356)
                      ..++.++.+..+ ...|++|+|.|. |.+|..+++.++.+|++|++++.++.+...++ ..|+. +.+      ..+.+ 
T Consensus       179 ~s~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-~~G~~-v~~------leeal-  248 (406)
T TIGR00936       179 QSTIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAA-MDGFR-VMT------MEEAA-  248 (406)
T ss_pred             hhHHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-hcCCE-eCC------HHHHH-
Confidence            345555554433 368999999997 99999999999999999999988887766666 55653 221      22223 


Q ss_pred             HHCCCCceEEEECCchh-hHH-HHHHhcccCCEEEEEeccc
Q 042784          229 KYFPNGIDVYLDNVGGK-MLE-AVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       229 ~~~~~~~d~vld~~g~~-~~~-~~~~~l~~~G~~v~~g~~~  267 (356)
                          .+.|++|+++|.. .+. ..+..+++++.++.+|...
T Consensus       249 ----~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       249 ----KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             ----hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence                2479999999986 454 4888999999999988754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02494 adenosylhomocysteinase

Probab=98.15  E-value=2.6e-05  Score=72.98  Aligned_cols=104  Identities=14%  Similarity=0.185  Sum_probs=79.7

Q ss_pred             hhHHHHHHHhCCC-CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHH
Q 042784          150 FAAWVGIEVLGQP-KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALT  228 (356)
Q Consensus       150 ~ta~~~l~~~~~~-~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~  228 (356)
                      ...+.++.+..++ -.|++|+|.|. |.+|..+++.++.+|++|++++.++.+...+. ..|.. +.      ++.+.+.
T Consensus       238 qS~~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-~~G~~-vv------~leEal~  308 (477)
T PLN02494        238 HSLPDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQAL-MEGYQ-VL------TLEDVVS  308 (477)
T ss_pred             ccHHHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-hcCCe-ec------cHHHHHh
Confidence            3446666555443 67999999997 99999999999999999999998877766665 56664 22      1233332


Q ss_pred             HHCCCCceEEEECCchhh--HHHHHHhcccCCEEEEEeccc
Q 042784          229 KYFPNGIDVYLDNVGGKM--LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       229 ~~~~~~~d~vld~~g~~~--~~~~~~~l~~~G~~v~~g~~~  267 (356)
                           .+|+++++.|...  ....++.+++++.++.+|...
T Consensus       309 -----~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        309 -----EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             -----hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence                 3799999999863  478999999999999998853

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.10  E-value=2.3e-05  Score=68.19  Aligned_cols=82  Identities=16%  Similarity=0.276  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-----e--eecCChhhHHHHHHHHCC--C
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-----A--FNYNSEMSFDAALTKYFP--N  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-----v--~~~~~~~~~~~~i~~~~~--~  233 (356)
                      ..+.+++|+|||+|+|...+..+...|.+++.+.|++++++.+.+++.-..     +  .|..+.++......++..  .
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~   83 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG   83 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence            457899999999999999999999999999999999999988876655322     2  355553444443333432  4


Q ss_pred             CceEEEECCch
Q 042784          234 GIDVYLDNVGG  244 (356)
Q Consensus       234 ~~d~vld~~g~  244 (356)
                      .+|+.++++|.
T Consensus        84 ~IdvLVNNAG~   94 (265)
T COG0300          84 PIDVLVNNAGF   94 (265)
T ss_pred             cccEEEECCCc
Confidence            79999999984

>PRK08324 short chain dehydrogenase; Validated

Probab=98.03  E-value=6.9e-05  Score=75.35  Aligned_cols=141  Identities=18%  Similarity=0.206  Sum_probs=90.3

Q ss_pred             CCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEE
Q 042784          113 LPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKV  192 (356)
Q Consensus       113 g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V  192 (356)
                      .++++|..+++..++.    -+.+++++ + .+...         ...+..+|+++||+|++|++|.++++.+...|++|
T Consensus       385 ~~~~~~~~l~~~~~f~----i~~~~~e~-a-~l~~~---------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~V  449 (681)
T PRK08324        385 EAVGRYEPLSEQEAFD----IEYWSLEQ-A-KLQRM---------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACV  449 (681)
T ss_pred             hhcCCccCCChhhhcc----eeeehhhh-h-hhhcC---------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEE
Confidence            4567787777665522    13466666 2 21100         01223468999999999999999999999999999


Q ss_pred             EEEeCChHHHHHHHHHhCC-----CceeecCChhhHHHHHHHHC--CCCceEEEECCch---------------------
Q 042784          193 VGSTGSDDNVKLLKEEFGY-----DDAFNYNSEMSFDAALTKYF--PNGIDVYLDNVGG---------------------  244 (356)
Q Consensus       193 ~~~~~s~~~~~~~~~~~g~-----~~v~~~~~~~~~~~~i~~~~--~~~~d~vld~~g~---------------------  244 (356)
                      ++++++.++.+.+.+.++.     ....|..+...+.+.+.+..  .+++|++|++.|.                     
T Consensus       450 vl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N  529 (681)
T PRK08324        450 VLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVN  529 (681)
T ss_pred             EEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHH
Confidence            9999998887766645554     11234444344444344332  2479999999982                     


Q ss_pred             -----hhHHHHHHhccc---CCEEEEEecccc
Q 042784          245 -----KMLEAVLNHVNV---HARIILCGMISQ  268 (356)
Q Consensus       245 -----~~~~~~~~~l~~---~G~~v~~g~~~~  268 (356)
                           ..++.+++.++.   +|+++.++....
T Consensus       530 ~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~  561 (681)
T PRK08324        530 ATGHFLVAREAVRIMKAQGLGGSIVFIASKNA  561 (681)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Confidence                 023344555555   588998887543

>PRK12742 oxidoreductase; Provisional

Probab=97.99  E-value=0.00012  Score=63.38  Aligned_cols=103  Identities=19%  Similarity=0.220  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHHhCCCce-eecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEEFGYDDA-FNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~~g~~~v-~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .++++||+|++|++|.++++.+...|++|+.+.+ ++++.+.+.++++...+ .|..+...+.+.+.+.  +++|++|++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~li~~   82 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKS--GALDILVVN   82 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHh--CCCcEEEEC
Confidence            3789999999999999999999999999887754 45555555435665422 3444423344444332  469999999


Q ss_pred             Cchh-----------h---------------HHHHHHhcccCCEEEEEecccc
Q 042784          242 VGGK-----------M---------------LEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       242 ~g~~-----------~---------------~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      .|..           .               ...+...++..|+++.++....
T Consensus        83 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~  135 (237)
T PRK12742         83 AGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNG  135 (237)
T ss_pred             CCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            8741           0               1233344566789998876543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.98  E-value=0.0001  Score=63.94  Aligned_cols=105  Identities=22%  Similarity=0.289  Sum_probs=71.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC---CCcee--ecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG---YDDAF--NYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g---~~~v~--~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+++|+|+|++|++|..+++.+...|++|+.+++++++.+.+.+.+.   ..+.+  |..+...+.+.+.+..  -+++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            36899999999999999999999999999999999887766632332   21222  3333333443333322  14689


Q ss_pred             EEEECCchh------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          237 VYLDNVGGK------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       237 ~vld~~g~~------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      .++.+.|..                        .++..+.+++.+|+++.++....
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~  139 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSG  139 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            999988731                        13445556677889998876543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.96  E-value=9.9e-05  Score=66.80  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=73.3

Q ss_pred             CCCCCccccccccCchhhhHHHHHHHhCCC---CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHH
Q 042784          133 ASGIPFPDYLSSLGIPGFAAWVGIEVLGQP---KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEE  208 (356)
Q Consensus       133 P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~---~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~  208 (356)
                      |+.++.+.  +....+...++.++......   .++.+|+|.|+ |.+|..+++.++..|+ +|+++++++++...+.++
T Consensus       145 ~k~vr~et--~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~  221 (311)
T cd05213         145 GKRVRTET--GISRGAVSISSAAVELAEKIFGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE  221 (311)
T ss_pred             HHHHhhhc--CCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence            77787776  44445666777776532221   46899999997 9999999999998886 899999988876555448


Q ss_pred             hCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhH
Q 042784          209 FGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKML  247 (356)
Q Consensus       209 ~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~  247 (356)
                      +|+. ++++   .++.+.+.     .+|+||.|++.+..
T Consensus       222 ~g~~-~~~~---~~~~~~l~-----~aDvVi~at~~~~~  251 (311)
T cd05213         222 LGGN-AVPL---DELLELLN-----EADVVISATGAPHY  251 (311)
T ss_pred             cCCe-EEeH---HHHHHHHh-----cCCEEEECCCCCch
Confidence            8873 4433   23444333     38999999998643

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.94  E-value=0.00021  Score=63.52  Aligned_cols=77  Identities=19%  Similarity=0.378  Sum_probs=57.8

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce-eecCChhhHHHHHHHHC--CCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA-FNYNSEMSFDAALTKYF--PNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v-~~~~~~~~~~~~i~~~~--~~~~d~vld~~  242 (356)
                      +++||+||+|++|...++.+...|++|++++++.++.+.+. ..+...+ .|..+..++.+.+.++.  .+++|+++++.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA-AAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            47999999999999999999889999999999888777766 4454322 46655444444444432  24699999998


Q ss_pred             c
Q 042784          243 G  243 (356)
Q Consensus       243 g  243 (356)
                      |
T Consensus        81 g   81 (274)
T PRK05693         81 G   81 (274)
T ss_pred             C
Confidence            8

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.93  E-value=6e-05  Score=59.34  Aligned_cols=95  Identities=21%  Similarity=0.290  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .+.+++|.|+ |++|.+++..+...|+ +|+++.|+.++.+.+.+.++..  ..+.+.   ++.+.+.     .+|+||.
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~---~~~~~~~-----~~DivI~   81 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE---DLEEALQ-----EADIVIN   81 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG---GHCHHHH-----TESEEEE
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH---HHHHHHh-----hCCeEEE
Confidence            4899999997 9999999999999999 6999999999988887787443  234443   3443443     4899999


Q ss_pred             CCchhh---HHHHHHhccc-CCEEEEEeccc
Q 042784          241 NVGGKM---LEAVLNHVNV-HARIILCGMIS  267 (356)
Q Consensus       241 ~~g~~~---~~~~~~~l~~-~G~~v~~g~~~  267 (356)
                      |++...   -...+..... .+.++.++.+.
T Consensus        82 aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr  112 (135)
T PF01488_consen   82 ATPSGMPIITEEMLKKASKKLRLVIDLAVPR  112 (135)
T ss_dssp             -SSTTSTSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred             ecCCCCcccCHHHHHHHHhhhhceeccccCC
Confidence            998752   1222222222 25677776543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.91  E-value=6.8e-05  Score=61.60  Aligned_cols=79  Identities=18%  Similarity=0.325  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC--CceeecCCh---hhHHHHHHHHCCCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY--DDAFNYNSE---MSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~--~~v~~~~~~---~~~~~~i~~~~~~~~d~v  238 (356)
                      .|.+|||+||++|+|++..+-...+|-+|++..+++++++.++++...  ..+.|..+.   ..+.+.+.+-.+ ..+++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P-~lNvl   82 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP-NLNVL   82 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC-chhee
Confidence            478999999999999999998899999999999999999999865443  233444332   234444444332 48999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      ++|.|
T Consensus        83 iNNAG   87 (245)
T COG3967          83 INNAG   87 (245)
T ss_pred             eeccc
Confidence            99888

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.85  E-value=0.00067  Score=56.23  Aligned_cols=92  Identities=18%  Similarity=0.198  Sum_probs=64.2

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECCch--
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNVGG--  244 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~--  244 (356)
                      |+|+||+|.+|...++.+...|.+|+++++++++.+.   ..+... ..|..+...+.+.+     .++|+||+++|.  
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al-----~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAAL-----KGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHH-----TTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhh-----hhcchhhhhhhhhc
Confidence            7999999999999999999999999999999987775   223321 12333323333333     369999999983  


Q ss_pred             ---hhHHHHHHhcccCC--EEEEEeccc
Q 042784          245 ---KMLEAVLNHVNVHA--RIILCGMIS  267 (356)
Q Consensus       245 ---~~~~~~~~~l~~~G--~~v~~g~~~  267 (356)
                         .......+.++..|  +++.++...
T Consensus        73 ~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   73 KDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             THHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             ccccccccccccccccccccceeeeccc
Confidence               34555566554444  777776544

...

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.85  E-value=0.00025  Score=62.15  Aligned_cols=143  Identities=18%  Similarity=0.222  Sum_probs=88.9

Q ss_pred             CCCCCCCCEEEeccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHH
Q 042784           99 DSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVG  178 (356)
Q Consensus        99 v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG  178 (356)
                      .+.+++||+++ -.-+|.+|.. +...++. +  ++++++..  +..+.+.. ....+..  .+.++++||-.|. |. |
T Consensus        64 ~~p~~~g~~~~-i~p~~~~~~~-~~~~~i~-i--~p~~afgt--g~h~tt~~-~l~~l~~--~~~~~~~VLDiGc-Gs-G  131 (250)
T PRK00517         64 FHPIRIGDRLW-IVPSWEDPPD-PDEINIE-L--DPGMAFGT--GTHPTTRL-CLEALEK--LVLPGKTVLDVGC-GS-G  131 (250)
T ss_pred             CCCEEEcCCEE-EECCCcCCCC-CCeEEEE-E--CCCCccCC--CCCHHHHH-HHHHHHh--hcCCCCEEEEeCC-cH-H
Confidence            34477899887 4456666643 4444433 3  66677654  22222211 2222321  2568999999995 65 8


Q ss_pred             HHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHCCC-CceEEEECCchh----hHHH
Q 042784          179 MFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYFPN-GIDVYLDNVGGK----MLEA  249 (356)
Q Consensus       179 ~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~----~~~~  249 (356)
                      ..++.+++ .|+ +|++++.++...+.+++.+....+   +...            .+. .||+|+.+....    .+..
T Consensus       132 ~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~------------~~~~~fD~Vvani~~~~~~~l~~~  198 (250)
T PRK00517        132 ILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP------------QGDLKADVIVANILANPLLELAPD  198 (250)
T ss_pred             HHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEc------------cCCCCcCEEEEcCcHHHHHHHHHH
Confidence            88776555 577 699999999988887743221111   1110            011 599999876653    5678


Q ss_pred             HHHhcccCCEEEEEecc
Q 042784          250 VLNHVNVHARIILCGMI  266 (356)
Q Consensus       250 ~~~~l~~~G~~v~~g~~  266 (356)
                      +.+.|+++|.++..|..
T Consensus       199 ~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        199 LARLLKPGGRLILSGIL  215 (250)
T ss_pred             HHHhcCCCcEEEEEECc
Confidence            88999999999987654

>PRK06182 short chain dehydrogenase; Validated

Probab=97.84  E-value=0.0003  Score=62.48  Aligned_cols=80  Identities=24%  Similarity=0.356  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .+.+++|+|++|++|..+++.+...|++|+++++++++.+.+. ..+.. ...|..+..++.+.+.++.  .+++|+++.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            3679999999999999999988889999999999888876665 44443 2245555445555454432  347999999


Q ss_pred             CCch
Q 042784          241 NVGG  244 (356)
Q Consensus       241 ~~g~  244 (356)
                      +.|.
T Consensus        81 ~ag~   84 (273)
T PRK06182         81 NAGY   84 (273)
T ss_pred             CCCc
Confidence            9873

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.83  E-value=2.6e-05  Score=76.66  Aligned_cols=98  Identities=14%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC---------------------hHHHHHHHHHhCCCceeecCC
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS---------------------DDNVKLLKEEFGYDDAFNYNS  219 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s---------------------~~~~~~~~~~~g~~~v~~~~~  219 (356)
                      ..++|++|+|.|+ |+.|+++++.++..|++|++++..                     +.+.+.++ ++|++..++...
T Consensus       133 ~~~~g~~V~VIGa-GpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~-~~Gv~~~~~~~~  210 (564)
T PRK12771        133 APDTGKRVAVIGG-GPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRIL-DLGVEVRLGVRV  210 (564)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHH-HCCCEEEeCCEE
Confidence            3678999999997 999999999999999999988742                     34566777 789865554321


Q ss_pred             hhhH-HHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEe
Q 042784          220 EMSF-DAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       220 ~~~~-~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g  264 (356)
                      ..+. .+.+    ..++|+||+++|.. .....+......|.+..++
T Consensus       211 ~~~~~~~~~----~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~  253 (564)
T PRK12771        211 GEDITLEQL----EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVD  253 (564)
T ss_pred             CCcCCHHHH----HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHH
Confidence            0111 1112    13599999999974 2222333344455544433

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.79  E-value=0.00046  Score=60.86  Aligned_cols=80  Identities=15%  Similarity=0.189  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-c--eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-D--AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.+++|+|++|++|..+++.+...|++|++++++.++.+.+.++++.. .  ..|..+..++.+.+.+..  -+.+|++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   84 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL   84 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4689999999999999999998889999999999887766665465532 1  234444344444443322  2469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        85 v~~ag   89 (261)
T PRK08265         85 VNLAC   89 (261)
T ss_pred             EECCC
Confidence            99887

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.77  E-value=0.00026  Score=63.05  Aligned_cols=79  Identities=15%  Similarity=0.373  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHH---HCCCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTK---YFPNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~---~~~~~~d~vl  239 (356)
                      .+.+++|+||+|++|.++++.+...|++|+++++++++.+.+. ..+... ..|..+..++...+.+   ..++.+|+++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE-AEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            4678999999999999999988889999999999988887776 445432 2355553444333333   3345799999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      .+.|
T Consensus        82 ~~Ag   85 (277)
T PRK05993         82 NNGA   85 (277)
T ss_pred             ECCC
Confidence            9876

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.76  E-value=0.00035  Score=67.37  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--------CCC-----c--eeecCChhhH
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF--------GYD-----D--AFNYNSEMSF  223 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~--------g~~-----~--v~~~~~~~~~  223 (356)
                      ..+.+.|.+|||+||+|++|..+++.+...|++|++++++.++.+.+.+.+        |..     .  ..|..+..++
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI  153 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI  153 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence            455678999999999999999999999889999999999888776543221        211     1  1244432233


Q ss_pred             HHHHHHHCCCCceEEEECCchh----------------hHHHHHHhccc--CCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGK----------------MLEAVLNHVNV--HARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~----------------~~~~~~~~l~~--~G~~v~~g~~~  267 (356)
                      .+.   +  +++|+||.|+|..                ....+++.+..  .++||.++...
T Consensus       154 ~~a---L--ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig  210 (576)
T PLN03209        154 GPA---L--GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG  210 (576)
T ss_pred             HHH---h--cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence            222   2  4699999998742                11223333332  36899887654

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.76  E-value=0.00027  Score=63.63  Aligned_cols=81  Identities=26%  Similarity=0.315  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ce----eecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DA----FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v----~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .|+++||+|++|++|.++++.+...|++|+++++++++.+.+.++++.. .+    .|..+..++.+.+.++.  -+.+|
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   87 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID   87 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4789999999999999999999999999999999988877766566531 11    35554344444443332  24699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      ++|++.|.
T Consensus        88 ~vI~nAG~   95 (296)
T PRK05872         88 VVVANAGI   95 (296)
T ss_pred             EEEECCCc
Confidence            99999883

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.68  E-value=0.00092  Score=59.66  Aligned_cols=94  Identities=24%  Similarity=0.336  Sum_probs=70.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|++++|.|. |.+|.+++..++.+|++|++..+++++.+.+. ++|.. .+.+   .++.+.+     ..+|+|+.++.
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-~~g~~-~~~~---~~l~~~l-----~~aDiVint~P  218 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARIT-EMGLI-PFPL---NKLEEKV-----AEIDIVINTIP  218 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCe-eecH---HHHHHHh-----ccCCEEEECCC
Confidence            4789999997 99999999999999999999999988877776 66653 2222   2333333     35899999997


Q ss_pred             hhhH-HHHHHhcccCCEEEEEecccc
Q 042784          244 GKML-EAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       244 ~~~~-~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ...+ ...++.++++..++.++...+
T Consensus       219 ~~ii~~~~l~~~k~~aliIDlas~Pg  244 (287)
T TIGR02853       219 ALVLTADVLSKLPKHAVIIDLASKPG  244 (287)
T ss_pred             hHHhCHHHHhcCCCCeEEEEeCcCCC
Confidence            6533 346677888888888877554

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.68  E-value=0.00042  Score=65.22  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .-.|++|+|.|. |.+|..+++.++.+|++|++++.++.+...+. ..|+. +.      ++.+.+     ..+|+|+.+
T Consensus       251 ~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-~~G~~-~~------~leell-----~~ADIVI~a  316 (476)
T PTZ00075        251 MIAGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAA-MEGYQ-VV------TLEDVV-----ETADIFVTA  316 (476)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-hcCce-ec------cHHHHH-----hcCCEEEEC
Confidence            457999999997 99999999999999999999987766665555 44653 22      233333     248999999


Q ss_pred             Cchh-hH-HHHHHhcccCCEEEEEeccc
Q 042784          242 VGGK-ML-EAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       242 ~g~~-~~-~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +|.. .+ ...+..|++++.++.+|...
T Consensus       317 tGt~~iI~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        317 TGNKDIITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             CCcccccCHHHHhccCCCcEEEEcCCCc
Confidence            9875 44 47899999999999998763

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00073  Score=59.49  Aligned_cols=83  Identities=18%  Similarity=0.243  Sum_probs=57.7

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC----ceeecCChhhHHHHHHHHC--CCCc
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD----DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~----~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .-++.++||+|++|++|..+++.+...|++|++++++++..+.+.+.+...    ...|..+..++.+.+.+..  -+++
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   87 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGL   87 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            356799999999999999999999999999999998877766665333322    2234444333333333321  1369


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+||.+.|.
T Consensus        88 d~vi~~ag~   96 (264)
T PRK12829         88 DVLVNNAGI   96 (264)
T ss_pred             CEEEECCCC
Confidence            999998874

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.67  E-value=0.00028  Score=53.39  Aligned_cols=94  Identities=20%  Similarity=0.285  Sum_probs=65.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHCCCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAK-LKGCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~-~~G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      |+.+||-.|  .|.|..++.+++ ..+++|++++.+++..+.+++.+   +...-+.... .++ .... -....+|+|+
T Consensus         1 p~~~vLDlG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~-~~~~-~~~~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLG--CGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQ-GDA-EFDP-DFLEPFDLVI   75 (112)
T ss_dssp             TTCEEEEET--TTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE-SCC-HGGT-TTSSCEEEEE
T ss_pred             CCCEEEEEc--CcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE-Ccc-ccCc-ccCCCCCEEE
Confidence            688999998  456888889998 47889999999999998888655   3322222221 233 1111 1134699999


Q ss_pred             ECC-ch----h------hHHHHHHhcccCCEEEE
Q 042784          240 DNV-GG----K------MLEAVLNHVNVHARIIL  262 (356)
Q Consensus       240 d~~-g~----~------~~~~~~~~l~~~G~~v~  262 (356)
                      ... ..    .      .++.+.+.|+|+|+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            877 22    1      37888899999999875

...

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.001  Score=60.97  Aligned_cols=81  Identities=20%  Similarity=0.233  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+||+|++|..+++.+...|++|+++++++++.+.+.+   +.|...   ..|..+..++.+.+.++.  -+++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            46799999999999999999998899999999998877665443   234431   235555344444333321  1469


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |++|++.|.
T Consensus        87 D~lInnAg~   95 (334)
T PRK07109         87 DTWVNNAMV   95 (334)
T ss_pred             CEEEECCCc
Confidence            999999873

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.63  E-value=0.0019  Score=54.39  Aligned_cols=99  Identities=16%  Similarity=0.235  Sum_probs=69.5

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH---HhC-CCceeecCChhhHHHHHHHHCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKE---EFG-YDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~---~~g-~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      ...+.++++|+-.|+ |. |.+++++++..+  .+|++++.+++..+.+++   .+| .+.+....  .+..+.+.+. .
T Consensus        35 ~l~~~~~~~vlDlG~-Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~--~d~~~~l~~~-~  109 (198)
T PRK00377         35 KLRLRKGDMILDIGC-GT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK--GEAPEILFTI-N  109 (198)
T ss_pred             HcCCCCcCEEEEeCC-cC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE--echhhhHhhc-C
Confidence            467889999999996 66 999999998764  499999999988877653   356 23222221  2232223222 2


Q ss_pred             CCceEEEECCch----hhHHHHHHhcccCCEEEE
Q 042784          233 NGIDVYLDNVGG----KMLEAVLNHVNVHARIIL  262 (356)
Q Consensus       233 ~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~  262 (356)
                      +.+|.|+...+.    ..+..+.+.|+++|+++.
T Consensus       110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence            469999986553    367888899999999885

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.00062  Score=62.26  Aligned_cols=80  Identities=21%  Similarity=0.375  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .++++||+|++|++|.++++.+...|++|+.+++++++.+.+.+   +.|...   ..|..+..++.+.+.+..  .+++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   85 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI   85 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999999999999999888765543   345432   235554333333333221  2569


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|++.|
T Consensus        86 D~lVnnAG   93 (330)
T PRK06139         86 DVWVNNVG   93 (330)
T ss_pred             CEEEECCC
Confidence            99999988

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.61  E-value=0.00082  Score=59.06  Aligned_cols=105  Identities=19%  Similarity=0.284  Sum_probs=70.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCc-ee----ecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDD-AF----NYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~-v~----~~~~~~~~~~~i~~~~--~~  233 (356)
                      .|+.|+|+|||+|+|.+++.-.-..|++++.+.+..++++.+.+   +.+..+ ++    |-.+.++....+.++-  -+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999888888899988888878777666521   344443 32    3333344444433221  36


Q ss_pred             CceEEEECCchh--------------------------hHHHHHHhcccC--CEEEEEecccc
Q 042784          234 GIDVYLDNVGGK--------------------------MLEAVLNHVNVH--ARIILCGMISQ  268 (356)
Q Consensus       234 ~~d~vld~~g~~--------------------------~~~~~~~~l~~~--G~~v~~g~~~~  268 (356)
                      ++|+.+++.|-.                          .-..++..|+..  |+++.+++..+
T Consensus        91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG  153 (282)
T KOG1205|consen   91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAG  153 (282)
T ss_pred             CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence            799999988831                          113455555443  99999988766

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.60  E-value=0.00056  Score=60.34  Aligned_cols=80  Identities=18%  Similarity=0.255  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-c--eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-D--AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.+++|+|++|++|..+++.+...|++|+.+++++++.+.+.++++.. .  ..|..+..++.+.+.+..  -+.+|++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   84 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCF   84 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            4789999999999999999988889999999999888877776555432 1  124444334444444332  2469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        85 i~~ag   89 (263)
T PRK06200         85 VGNAG   89 (263)
T ss_pred             EECCC
Confidence            99887

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.58  E-value=0.00036  Score=65.99  Aligned_cols=138  Identities=20%  Similarity=0.125  Sum_probs=86.8

Q ss_pred             eeeeeEEEEEeccCCCCCCCCCEEEecc-----------C--------CeeeEEeecCCcccccCCCCCCCCcccccccc
Q 042784           85 VILAFGIARVIRSKDSKYSDGDIVLRAF-----------L--------PVAEYSLLPCDLLTRKLDPASGIPFPDYLSSL  145 (356)
Q Consensus        85 ~~~~~G~v~~vg~~v~~~~~Gd~V~~~~-----------g--------~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l  145 (356)
                      |.+..+.+-+|+++.+..-+|+.-+++.           |        .|++.+.+           |+.+..+.  +..
T Consensus        93 g~ea~~hl~~V~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~-----------~k~v~~~t--~i~  159 (423)
T PRK00045         93 GEEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSV-----------AKRVRTET--GIG  159 (423)
T ss_pred             CHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH-----------HhhHhhhc--CCC
Confidence            3467777777888777655565443221           2        22332222           33333332  233


Q ss_pred             CchhhhHHHHHHHhCC---CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          146 GIPGFAAWVGIEVLGQ---PKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       146 ~~~~~ta~~~l~~~~~---~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      ..+...++.++.....   -.++.+|+|.|+ |.+|.++++.++..|+ +|+++.++.++...+.+.+|.. ++++   .
T Consensus       160 ~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~---~  234 (423)
T PRK00045        160 AGAVSVASAAVELAKQIFGDLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPL---D  234 (423)
T ss_pred             CCCcCHHHHHHHHHHHhhCCccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeH---H
Confidence            3345556666643221   256899999997 9999999999999998 8999999988876554478764 4433   2


Q ss_pred             hHHHHHHHHCCCCceEEEECCchh
Q 042784          222 SFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       222 ~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      ++.+.+     .++|+||+|+|.+
T Consensus       235 ~~~~~l-----~~aDvVI~aT~s~  253 (423)
T PRK00045        235 ELPEAL-----AEADIVISSTGAP  253 (423)
T ss_pred             HHHHHh-----ccCCEEEECCCCC
Confidence            333333     3589999999874

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.58  E-value=0.00069  Score=59.45  Aligned_cols=81  Identities=17%  Similarity=0.229  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .|++|+|+||+|++|.++++.+...|++|+++++++.+.+...++++.. ...|..+..++...+.+..  .+++|+++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   85 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFN   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4789999999999999999999899999999998887766655455542 2235555344444343322  246899999


Q ss_pred             CCch
Q 042784          241 NVGG  244 (356)
Q Consensus       241 ~~g~  244 (356)
                      +.|.
T Consensus        86 ~ag~   89 (255)
T PRK06057         86 NAGI   89 (255)
T ss_pred             CCCc
Confidence            8863

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.57  E-value=0.00083  Score=58.42  Aligned_cols=79  Identities=23%  Similarity=0.377  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .+.+++|+|++|++|..+++.+...|++|++++++.++.+.+.+.++... ..|..+..++.+.+.+  .+++|++|++.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~--~~~~d~vi~~a   85 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAA--AGAFDGLVNCA   85 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHH--hCCCCEEEECC
Confidence            46899999999999999999999999999999988887766654555432 2344442333333322  24699999988


Q ss_pred             ch
Q 042784          243 GG  244 (356)
Q Consensus       243 g~  244 (356)
                      |.
T Consensus        86 g~   87 (245)
T PRK07060         86 GI   87 (245)
T ss_pred             CC
Confidence            73

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.57  E-value=0.0016  Score=62.36  Aligned_cols=80  Identities=19%  Similarity=0.277  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD--DNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~--~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      ++.++||+|++|++|..+++.+...|++|++++++.  ++.+.+.++++.. ...|..+.......+.++.  .+++|++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~v  288 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIV  288 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            578999999999999999999999999999988642  3333343355543 2245555333333333332  2369999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      |++.|
T Consensus       289 i~~AG  293 (450)
T PRK08261        289 VHNAG  293 (450)
T ss_pred             EECCC
Confidence            99988

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.0013  Score=56.80  Aligned_cols=81  Identities=17%  Similarity=0.266  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC---Cce--eecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY---DDA--FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~---~~v--~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+.+++|+||+|++|..+++.+...|++|+++++++++...+.+++..   .+.  .|..+..++.+.+.++.  .+++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999999888878899999999888776665545432   112  24444344444444332  24699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      ++|.+.|.
T Consensus        85 ~vi~~ag~   92 (237)
T PRK07326         85 VLIANAGV   92 (237)
T ss_pred             EEEECCCC
Confidence            99998763

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.00067  Score=60.20  Aligned_cols=79  Identities=24%  Similarity=0.296  Sum_probs=57.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      +.+++|+||+|++|...++.+...|++|+++++++++.+.+.+.++...+  .|..+..++.+.+.++.  -+++|+++.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~   84 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVN   84 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            67999999999999999988888899999999988887766545552212  35555444444444332  146999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        85 ~ag   87 (273)
T PRK07825         85 NAG   87 (273)
T ss_pred             CCC
Confidence            987

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.0089  Score=52.47  Aligned_cols=81  Identities=11%  Similarity=0.128  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHH---HhCCC---ceeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKE---EFGYD---DAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+|++|++|..+++.+...|++ |++++++.++.+...+   ..+..   ...|..+..++.+.+.+..  -++
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGR   84 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999997 9999987765543322   23432   1235554333444333321  136


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|.+|.+.|.
T Consensus        85 id~li~~ag~   94 (260)
T PRK06198         85 LDALVNAAGL   94 (260)
T ss_pred             CCEEEECCCc
Confidence            9999999873

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.0014  Score=57.70  Aligned_cols=79  Identities=25%  Similarity=0.431  Sum_probs=56.5

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC----ceeecCChhhHHHHHHHH---CCCCceEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD----DAFNYNSEMSFDAALTKY---FPNGIDVY  238 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~----~v~~~~~~~~~~~~i~~~---~~~~~d~v  238 (356)
                      +++||+||+|++|...++.+...|++|++++++.++.+.+.+.++..    ...|..+..++.+.+.+.   ..+.+|++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v   81 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL   81 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence            57999999999999999988889999999999888877665444311    123444434444444432   13579999


Q ss_pred             EECCch
Q 042784          239 LDNVGG  244 (356)
Q Consensus       239 ld~~g~  244 (356)
                      +.|.|.
T Consensus        82 i~~ag~   87 (260)
T PRK08267         82 FNNAGI   87 (260)
T ss_pred             EECCCC
Confidence            999874

>PRK08017 oxidoreductase; Provisional

Probab=97.53  E-value=0.00056  Score=59.94  Aligned_cols=78  Identities=18%  Similarity=0.357  Sum_probs=57.3

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHH---HHHHHHCCCCceEEEEC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFD---AALTKYFPNGIDVYLDN  241 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~---~~i~~~~~~~~d~vld~  241 (356)
                      ++++|+|++|++|..+++.+...|++|++++++.++.+.++ ..+... ..|..+..++.   +.+.+..++.+|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN-SLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH-hCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            57999999999999999999999999999999988888777 566542 23444433333   33333344578999988


Q ss_pred             Cch
Q 042784          242 VGG  244 (356)
Q Consensus       242 ~g~  244 (356)
                      .|.
T Consensus        82 ag~   84 (256)
T PRK08017         82 AGF   84 (256)
T ss_pred             CCC
Confidence            763

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.52  E-value=0.0024  Score=55.60  Aligned_cols=81  Identities=21%  Similarity=0.258  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|..++..+...|++|+++++++++.+.+.+.+   +.. .  ..|..+..++.+.+.+..  -+++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999889999999998877665543232   322 1  124444333333333322  1469


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |++|.+.|.
T Consensus        86 d~vi~~ag~   94 (250)
T PRK12939         86 DGLVNNAGI   94 (250)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK06484 short chain dehydrogenase; Validated

Probab=97.51  E-value=0.0015  Score=63.64  Aligned_cols=105  Identities=19%  Similarity=0.223  Sum_probs=73.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+|+++++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+..++.+.+.++.  -+.+|++
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l  347 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVL  347 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999999888999999999998888877775666432   234444344444443332  2469999


Q ss_pred             EECCchh------------h---------------HHHHHHhcccCCEEEEEecccc
Q 042784          239 LDNVGGK------------M---------------LEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       239 ld~~g~~------------~---------------~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      |.+.|..            .               .+.++..++.+|+++.++...+
T Consensus       348 i~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~  404 (520)
T PRK06484        348 VNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIAS  404 (520)
T ss_pred             EECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhh
Confidence            9988731            1               2233445566789998876544

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.51  E-value=0.0016  Score=53.89  Aligned_cols=89  Identities=21%  Similarity=0.252  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -.|.+|.|+|. |.+|...+++++.+|++|++.+++.+...... ..+.    .+   .++.+.+.+     .|+|+.+.
T Consensus        34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-~~~~----~~---~~l~ell~~-----aDiv~~~~   99 (178)
T PF02826_consen   34 LRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-EFGV----EY---VSLDELLAQ-----ADIVSLHL   99 (178)
T ss_dssp             STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-HTTE----EE---SSHHHHHHH------SEEEE-S
T ss_pred             cCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhhhcc-cccc----ee---eehhhhcch-----hhhhhhhh
Confidence            45899999996 99999999999999999999998887766444 4443    22   245555544     79999877


Q ss_pred             ch-h-----hHHHHHHhcccCCEEEEEec
Q 042784          243 GG-K-----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       243 g~-~-----~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .. +     .-...+..++++..+|.++.
T Consensus       100 plt~~T~~li~~~~l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen  100 PLTPETRGLINAEFLAKMKPGAVLVNVAR  128 (178)
T ss_dssp             SSSTTTTTSBSHHHHHTSTTTEEEEESSS
T ss_pred             ccccccceeeeeeeeeccccceEEEeccc
Confidence            63 1     23567788998888887655

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.00073  Score=59.69  Aligned_cols=80  Identities=20%  Similarity=0.263  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      ++.+++|+|++|++|..+++.+...|++|+++++++++.+...+++   +.. .  ..|..+..++...+.+..  -+++
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i   87 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI   87 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999988899999999998877654443232   221 1  234444344444444432  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        88 D~vi~~ag   95 (264)
T PRK07576         88 DVLVSGAA   95 (264)
T ss_pred             CEEEECCC
Confidence            99998875

>PRK06196 oxidoreductase; Provisional

Probab=97.50  E-value=0.00087  Score=60.91  Aligned_cols=80  Identities=18%  Similarity=0.270  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc--eeecCChhhHHHHHHHHC--CCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD--AFNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~--v~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      .+.+++|+||+|++|.+++..+...|++|++++++.++.+.+.+++....  ..|..+..++.+.+.++.  .+++|++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li  104 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILI  104 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            46899999999999999998888899999999998887665543432211  234444344444444432  24799999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      .+.|
T Consensus       105 ~nAg  108 (315)
T PRK06196        105 NNAG  108 (315)
T ss_pred             ECCC
Confidence            9887

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0017  Score=56.65  Aligned_cols=103  Identities=18%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHHH---hCCC---ceeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKEE---FGYD---DAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~~---~g~~---~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+|++|++|..++..+...|.+|+++.++.+ +.+.+.++   .+..   ...|..+..++...+.++.  .++
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            3689999999999999999988889999998887643 33333212   2322   1235555344444343322  136


Q ss_pred             ceEEEECCchh--------------------hHHHHHHhcccCCEEEEEecc
Q 042784          235 IDVYLDNVGGK--------------------MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       235 ~d~vld~~g~~--------------------~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +|+++.+.|..                    .++.+...+...|+++.++..
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~  136 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSH  136 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCc
Confidence            89999887531                    233444445556888887653

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0012  Score=58.30  Aligned_cols=81  Identities=19%  Similarity=0.338  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCC---ceeecCChhhHHHHHHHHC-CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYD---DAFNYNSEMSFDAALTKYF-PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~i~~~~-~~~~  235 (356)
                      .|+++||+|+++++|.++++.+...|++|+++++++++.+.+.+++    +..   ...|..+..+..+.+.+.. -+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            4789999999999999999999999999999998887766554333    322   1234444333433333332 2469


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+++.+.|.
T Consensus        87 D~lv~nag~   95 (263)
T PRK08339         87 DIFFFSTGG   95 (263)
T ss_pred             cEEEECCCC
Confidence            999998873

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.49  E-value=0.001  Score=58.61  Aligned_cols=80  Identities=21%  Similarity=0.222  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-c--eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-D--AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.+++|+||+|++|..+++.+...|++|++++++.++.+.+++..+.. .  ..|..+..+..+.+.++.  -+.+|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   83 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL   83 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4789999999999999999999899999999998888777766343422 1  124444333444343322  1468999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        84 i~~Ag   88 (262)
T TIGR03325        84 IPNAG   88 (262)
T ss_pred             EECCC
Confidence            99876

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.46  E-value=0.0012  Score=60.21  Aligned_cols=80  Identities=16%  Similarity=0.290  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC---C-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY---D-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~---~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|..+++.+...|++|+++++++++.+.+.+++..   . .  ..|..+..++.+.+.++.  .+.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            468899999999999999988888899999999988877665545432   1 1  134444333433333322  3469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|++.|
T Consensus        85 D~li~nAg   92 (322)
T PRK07453         85 DALVCNAA   92 (322)
T ss_pred             cEEEECCc
Confidence            99999887

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0008  Score=57.84  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=55.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+++|+|++|++|...+..+...|++|+++++++++.+.++ +++...+  .|..+..++.+.+.++..+++|+++.+.|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ-ALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH-hccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            57999999999999988888888999999998887766665 4433222  34444344444444444457999999876


Q ss_pred             h
Q 042784          244 G  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus        81 ~   81 (225)
T PRK08177         81 I   81 (225)
T ss_pred             c
Confidence            3

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0009  Score=58.87  Aligned_cols=80  Identities=19%  Similarity=0.177  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC-----CC---ceeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG-----YD---DAFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g-----~~---~v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+.+++|+|++|++|.++++.+...|++|+.+++++++.+.+.+++.     ..   ...|..+..++.+.+.++.  -+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            47899999999999999999988999999999988877665543432     11   1124444334444444332  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      .+|+++.+.|
T Consensus        86 ~id~li~~ag   95 (260)
T PRK07063         86 PLDVLVNNAG   95 (260)
T ss_pred             CCcEEEECCC
Confidence            6999999987

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0013  Score=57.37  Aligned_cols=80  Identities=14%  Similarity=0.216  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      ++.+++|+||+|++|...++.+...|++|+++++++++.+.+.++++....   .|..+..+....+.++.  .+++|++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            468999999999999999999999999999999887776666556665321   23333233333222221  2469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        85 i~~ag   89 (249)
T PRK06500         85 FINAG   89 (249)
T ss_pred             EECCC
Confidence            99887

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.0015  Score=57.51  Aligned_cols=83  Identities=29%  Similarity=0.366  Sum_probs=56.9

Q ss_pred             CCCCCEEEEEcCCC-hHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----hCCCce----eecCChhhHHHHHHHHC-
Q 042784          162 PKSGSNVFVSAAAG-GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE----FGYDDA----FNYNSEMSFDAALTKYF-  231 (356)
Q Consensus       162 ~~~g~~VlV~g~~g-~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~----~g~~~v----~~~~~~~~~~~~i~~~~-  231 (356)
                      +..+++++|+|++| ++|.++++.+...|++|+++++++++.+...++    +|...+    .|..+..++...+.+.. 
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            34578999999986 899999999999999999999887766554322    443222    24444333443333321 


Q ss_pred             -CCCceEEEECCch
Q 042784          232 -PNGIDVYLDNVGG  244 (356)
Q Consensus       232 -~~~~d~vld~~g~  244 (356)
                       .+.+|++|.+.|.
T Consensus        94 ~~g~id~li~~ag~  107 (262)
T PRK07831         94 RLGRLDVLVNNAGL  107 (262)
T ss_pred             HcCCCCEEEECCCC
Confidence             2469999999983

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0039  Score=55.25  Aligned_cols=78  Identities=18%  Similarity=0.234  Sum_probs=53.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc----eeecCChhhHHHHHHHHC--CCCceE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD----AFNYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~----v~~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      +++|+||+|++|..+++.+...|++|+++++++++.+.+.++   .+...    ..|..+..++.+.+.++.  .+++|+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   81 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV   81 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            699999999999999998888999999998887765444322   33321    245555333333333322  246999


Q ss_pred             EEECCch
Q 042784          238 YLDNVGG  244 (356)
Q Consensus       238 vld~~g~  244 (356)
                      ++.+.|.
T Consensus        82 lv~~ag~   88 (272)
T PRK07832         82 VMNIAGI   88 (272)
T ss_pred             EEECCCC
Confidence            9999873

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0012  Score=58.37  Aligned_cols=80  Identities=16%  Similarity=0.222  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCc----eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYDD----AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~~----v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+.+++|+|+++++|.+.++.+...|++|+.+++++++.+.+.+++    +...    ..|..+..++.+.+.++.  -+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999999999887765544332    1111    234554344444333332  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      .+|+++.+.|
T Consensus        87 ~id~li~~Ag   96 (265)
T PRK07062         87 GVDMLVNNAG   96 (265)
T ss_pred             CCCEEEECCC
Confidence            6999999987

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.001  Score=59.84  Aligned_cols=81  Identities=22%  Similarity=0.398  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+||+|++|.+.++.+...|++|++++++.++.+.+.+++   +.. ..  .|..+..++.+.+.++.  -+++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            3578999999999999999888888999999999987766554332   322 11  24444333434333321  2469


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+++.|.|.
T Consensus       119 d~li~~AG~  127 (293)
T PRK05866        119 DILINNAGR  127 (293)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.0011  Score=58.06  Aligned_cols=81  Identities=26%  Similarity=0.352  Sum_probs=56.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC-Cce--eecCChhhHHHHHHHHC--CCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY-DDA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~-~~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      -.+++++|+|++|++|..++..+...|++|+++++++++.+.+...+   +. ..+  .|..+..++.+.+.++.  .+.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            34789999999999999999999889999999999888766554332   11 112  24443344444443322  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        87 ~d~li~~ag   95 (258)
T PRK06949         87 IDILVNNSG   95 (258)
T ss_pred             CCEEEECCC
Confidence            999999988

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.41  E-value=0.0011  Score=58.16  Aligned_cols=80  Identities=20%  Similarity=0.280  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+|++|++|.++++.+...|++|++++++.++.+.+.+++   +..   ...|..+..++.+.+.++.  -+++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999899999999998887766655343   221   1234444344444343322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        88 d~lv~~ag   95 (253)
T PRK05867         88 DIAVCNAG   95 (253)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0013  Score=59.77  Aligned_cols=80  Identities=19%  Similarity=0.212  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----C-CC---ceeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----G-YD---DAFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g-~~---~v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .|.+++|+||++++|.++++.+...|++|+.++++.++.+.+.+++    + ..   ...|..+..+..+.+.++.  .+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            3689999999999999999888889999999999887765544332    1 11   1234444333333333322  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      .+|++|.+.|
T Consensus        93 ~iD~li~nAG  102 (313)
T PRK05854         93 PIHLLINNAG  102 (313)
T ss_pred             CccEEEECCc
Confidence            6999999887

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.38  E-value=0.0021  Score=59.82  Aligned_cols=112  Identities=23%  Similarity=0.157  Sum_probs=77.8

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      +|..+....+..+.+..++++|++||-.|.  |.|..+..+++..|++|++++.+++..+.+++.. ....++... .++
T Consensus       147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGc--G~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~-~~l~v~~~~-~D~  222 (383)
T PRK11705        147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGC--GWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC-AGLPVEIRL-QDY  222 (383)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-ccCeEEEEE-Cch
Confidence            344455556666666778899999999994  5788888999988999999999999999988433 221122111 222


Q ss_pred             HHHHHHHCCCCceEEEEC-----Cch----hhHHHHHHhcccCCEEEEEe
Q 042784          224 DAALTKYFPNGIDVYLDN-----VGG----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~-----~g~----~~~~~~~~~l~~~G~~v~~g  264 (356)
                      .    ++ .+.+|.|+..     +|.    ..+..+.+.|+|+|.++...
T Consensus       223 ~----~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        223 R----DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             h----hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            1    12 2469998753     343    36788889999999988754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.37  E-value=0.0049  Score=51.73  Aligned_cols=99  Identities=19%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC----CCc-eeecCChhhHHHHHHHHCCCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG----YDD-AFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g----~~~-v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      .+.+++|.|++|++|..++..+...|++|+.+.++.++.+.+.+.+.    ... ..+..+..++.+.+     .++|+|
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~diV  101 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAI-----KGADVV  101 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHH-----hcCCEE
Confidence            57899999999999999888888889999999998888776654442    221 12233223333333     348999


Q ss_pred             EECCchhh--HHHHHHhcccCCEEEEEeccc
Q 042784          239 LDNVGGKM--LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       239 ld~~g~~~--~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      |.++....  ........+++-.++.+....
T Consensus       102 i~at~~g~~~~~~~~~~~~~~~vv~D~~~~~  132 (194)
T cd01078         102 FAAGAAGVELLEKLAWAPKPLAVAADVNAVP  132 (194)
T ss_pred             EECCCCCceechhhhcccCceeEEEEccCCC
Confidence            99887653  222222333433455555443

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.37  E-value=0.0014  Score=57.20  Aligned_cols=81  Identities=20%  Similarity=0.292  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--CC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG--YD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g--~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+.++||+|++|++|..+++.+...|++|+++++++++.+.+...+.  ..   ...|..+..++...+.+..  .+.+|
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   83 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD   83 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            36799999999999999998888889999999999887766543443  11   1224444344444443321  24699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      ++|.+.|.
T Consensus        84 ~vi~~ag~   91 (251)
T PRK07231         84 ILVNNAGT   91 (251)
T ss_pred             EEEECCCC
Confidence            99998874

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.37  E-value=0.0017  Score=56.74  Aligned_cols=80  Identities=18%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      ++.++||+|++|++|..+++.+...|++|+.+++++++.+.+.++   .+..   ...|..+...+.+.+.++.  .+++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999988999999999887765544322   2332   1223333233433344332  1468


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |.+|.+.|
T Consensus        84 d~vi~~ag   91 (253)
T PRK08217         84 NGLINNAG   91 (253)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0015  Score=58.08  Aligned_cols=81  Identities=21%  Similarity=0.204  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.+++|+|++|++|.+.++.+...|++|+++++++++.+.+.+..+..   ...|..+...+.+.+.+..  -+++|++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~v   82 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVL   82 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            3578999999999999999988889999999999888877666333321   1234444344444444322  1469999


Q ss_pred             EECCch
Q 042784          239 LDNVGG  244 (356)
Q Consensus       239 ld~~g~  244 (356)
                      +.+.|.
T Consensus        83 v~~ag~   88 (277)
T PRK06180         83 VNNAGY   88 (277)
T ss_pred             EECCCc
Confidence            999874

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0017  Score=57.29  Aligned_cols=80  Identities=15%  Similarity=0.212  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+|++|++|..+++.+...|++|+++++++++.+.+.+.+   +.. .+  .|..+...+.+.+.+..  -+++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   88 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRL   88 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999988889999999998887765544332   221 12  34554334433333321  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|++.|
T Consensus        89 d~vi~~Ag   96 (263)
T PRK07814         89 DIVVNNVG   96 (263)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK06194 hypothetical protein; Provisional

Probab=97.35  E-value=0.0015  Score=58.31  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=54.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      +.++||+||+|++|..+++.+...|++|++++++.++.+...+++   +...   ..|..+..++.+.+.+..  .+++|
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id   85 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVH   85 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            678999999999999999988889999999998876655443333   3221   124444334444333321  24689


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      +++.+.|.
T Consensus        86 ~vi~~Ag~   93 (287)
T PRK06194         86 LLFNNAGV   93 (287)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0017  Score=57.73  Aligned_cols=80  Identities=19%  Similarity=0.346  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|.+.++.+...|++|+++++++++.+.+.+++   |...   ..|..+..++.+.+.+..  -+.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999998889999999998877665543333   3221   124444334433333321  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        85 d~li~nAg   92 (275)
T PRK05876         85 DVVFSNAG   92 (275)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0014  Score=57.42  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+||+|++|..++..+...|++|+++++++++.+.+.+++   +..   ...|..+..++...+.+..  -+.+
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRV   83 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence            5789999999999999999988899999999998887765554343   221   2234444344444443332  1468


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        84 d~vi~~ag   91 (258)
T PRK07890         84 DALVNNAF   91 (258)
T ss_pred             cEEEECCc
Confidence            99999886

>PRK09186 flagellin modification protein A; Provisional

Probab=97.32  E-value=0.0019  Score=56.59  Aligned_cols=80  Identities=16%  Similarity=0.187  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCc----eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYDD----AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~~----v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+.+++|+|++|++|...+..+...|++|+++++++++.+.+.+++    +...    ..|..+..++.+.+.++.  -+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999899999999998887765554343    2211    235554344444444332  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+++.+.+
T Consensus        83 ~id~vi~~A~   92 (256)
T PRK09186         83 KIDGAVNCAY   92 (256)
T ss_pred             CccEEEECCc
Confidence            6999999875

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0016  Score=57.04  Aligned_cols=80  Identities=25%  Similarity=0.352  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc-e--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD-A--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|..+++.+...|++|+.+++++++.+.+.+++   +... .  .|..+..+..+.+.++.  -+.+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            3679999999999999999988889999999999888766554333   3221 1  24444333333333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        85 d~li~~ag   92 (254)
T PRK07478         85 DIAFNNAG   92 (254)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.32  E-value=0.002  Score=56.55  Aligned_cols=81  Identities=20%  Similarity=0.340  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+|++|++|.++++.+...|++|+.+++++++.+.+.+.+   |.. .  ..|..+..++.+.+.+..  -+.+
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            4789999999999999999988888999999998877655443232   221 1  124444344444443322  2469


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |++|.+.|.
T Consensus        89 d~li~~ag~   97 (255)
T PRK07523         89 DILVNNAGM   97 (255)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0021  Score=55.20  Aligned_cols=76  Identities=16%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +++|+|++|++|.+.++.+...|++|+.+++++++.+.+.++++... ..|..+..++.+.+.++. +.+|+++.+.|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~-~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP-HHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh-hcCcEEEECCC
Confidence            58999999999999999888899999999988888776654555431 235555344544444432 35899998764

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0023  Score=56.02  Aligned_cols=80  Identities=23%  Similarity=0.310  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc--e--eecCChhhHHHHHHHHC--CCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD--A--FNYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~--v--~~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      .+.++||+||+|++|..+++.+...|++|+.++++++..+... ++....  .  .|..+..++.+.+.++.  .+++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAA-QLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4689999999999999999888889999999998876555444 332221  1  24443333333333321  146999


Q ss_pred             EEECCch
Q 042784          238 YLDNVGG  244 (356)
Q Consensus       238 vld~~g~  244 (356)
                      ++.+.|.
T Consensus        93 vi~~ag~   99 (255)
T PRK06841         93 LVNSAGV   99 (255)
T ss_pred             EEECCCC
Confidence            9999873

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0021  Score=55.56  Aligned_cols=81  Identities=12%  Similarity=0.123  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc-eeecCChhhHHHHHHHHC--CCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD-AFNYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~-v~~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      ++.++||+|++|++|..+++.+...|++|++++++.++.....++   .+... ..|..+..++.+.+.+..  -+++|+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   85 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA   85 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence            378999999999999999998888899999999876553322212   22221 134444333433333322  147999


Q ss_pred             EEECCch
Q 042784          238 YLDNVGG  244 (356)
Q Consensus       238 vld~~g~  244 (356)
                      |+.+.|.
T Consensus        86 vi~~ag~   92 (239)
T PRK12828         86 LVNIAGA   92 (239)
T ss_pred             EEECCcc
Confidence            9998773

>PRK05717 oxidoreductase; Validated

Probab=97.31  E-value=0.0022  Score=56.23  Aligned_cols=80  Identities=19%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|.+++|+|++|++|..++..+...|++|+.++++.++.+.+.++++..   ...|..+..++.+.+.++.  -+.+|++
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   88 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDAL   88 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4789999999999999999888888999999987776655544355532   1234444333333333322  1369999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        89 i~~ag   93 (255)
T PRK05717         89 VCNAA   93 (255)
T ss_pred             EECCC
Confidence            99887

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0027  Score=55.80  Aligned_cols=79  Identities=18%  Similarity=0.223  Sum_probs=55.4

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-----ceeecCChhhHHHHHHHHC--CCCceE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-----DAFNYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-----~v~~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      +.+++|+|++|++|...++.+...|++|++++++.++.+.+.+++...     ...|..+..++.+.+.++.  -+.+|+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            468999999999999999888888999999998888776665343221     1134444344444444332  135899


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ++.+.|
T Consensus        82 lv~~ag   87 (257)
T PRK07024         82 VIANAG   87 (257)
T ss_pred             EEECCC
Confidence            999877

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0024  Score=54.72  Aligned_cols=78  Identities=17%  Similarity=0.207  Sum_probs=56.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      ++++|+|++|++|..+++.+...|++|+.++++.++.+.++ ..+.. ...|..+..++.+.+.++.+.++|+++.+.|.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ-ALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH-hccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            47999999999999999888788999999998888777766 44543 23344443444444444444579999998764

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.27  E-value=0.0025  Score=55.95  Aligned_cols=97  Identities=22%  Similarity=0.260  Sum_probs=76.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC---
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV---  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~---  242 (356)
                      -+|.|.|+ |.+|.-+..+|..+|++|...+.+.+|+..+...|+...-.-|++...+.+.+.+     .|++|.++   
T Consensus       169 ~kv~iiGG-GvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~-----aDlvIgaVLIp  242 (371)
T COG0686         169 AKVVVLGG-GVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKK-----ADLVIGAVLIP  242 (371)
T ss_pred             ccEEEECC-ccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhh-----ccEEEEEEEec
Confidence            45778887 9999999999999999999999999999999977777633445554566666644     89998865   


Q ss_pred             chh----hHHHHHHhcccCCEEEEEecccc
Q 042784          243 GGK----MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       243 g~~----~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      |..    ..++..+.|+|++.++.+....+
T Consensus       243 gakaPkLvt~e~vk~MkpGsVivDVAiDqG  272 (371)
T COG0686         243 GAKAPKLVTREMVKQMKPGSVIVDVAIDQG  272 (371)
T ss_pred             CCCCceehhHHHHHhcCCCcEEEEEEEcCC
Confidence            221    56777899999999999887655

>PRK06128 oxidoreductase; Provisional

Probab=97.27  E-value=0.0061  Score=54.92  Aligned_cols=104  Identities=17%  Similarity=0.293  Sum_probs=64.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH--HHH----HHHHHhCCCc---eeecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD--NVK----LLKEEFGYDD---AFNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~--~~~----~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~  232 (356)
                      .+.++||+|++|++|.+++..+...|++|+.+.++.+  +.+    .++ ..|...   ..|..+..++.+.+.+..  -
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQ-AEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999888889999988765432  222    222 334321   124444333333333322  2


Q ss_pred             CCceEEEECCchh---------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          233 NGIDVYLDNVGGK---------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       233 ~~~d~vld~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +++|++|.+.|..                           ..+.++..++.+|+++.++....
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~  195 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQS  195 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccc
Confidence            4699999988731                           11233445566789888776543

>PLN02253 xanthoxin dehydrogenase

Probab=97.27  E-value=0.0026  Score=56.61  Aligned_cols=80  Identities=21%  Similarity=0.216  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-----ceeecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-----DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-----~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+.+++|+|++|++|.++++.+...|++|++++++++..+.+.++++..     ...|..+...+.+.+.++.  -+++|
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id   96 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD   96 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            3689999999999999999888888999999998776655554344321     1234444344444333322  14699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++.+.|
T Consensus        97 ~li~~Ag  103 (280)
T PLN02253         97 IMVNNAG  103 (280)
T ss_pred             EEEECCC
Confidence            9999886

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.002  Score=56.34  Aligned_cols=79  Identities=14%  Similarity=0.161  Sum_probs=54.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-cee--ecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-DAF--NYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      |.+++|+|++|++|...++.+...|++|+++++++++.+.+.+.+   +.. ..+  |..+..++.+.+.++.  -+.+|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            478999999999999999999899999999998887665554332   221 122  4444344444343332  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++.+.|
T Consensus        81 ~lI~~ag   87 (252)
T PRK07677         81 ALINNAA   87 (252)
T ss_pred             EEEECCC
Confidence            9999887

>PRK06484 short chain dehydrogenase; Validated

Probab=97.26  E-value=0.0021  Score=62.70  Aligned_cols=81  Identities=26%  Similarity=0.320  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+++++|+|+++++|.++++.+...|++|+.++++.++.+.+.++++..   ...|..+..++.+.+.++.  .+++|++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDVL   83 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            5789999999999999999999999999999999888877766566643   2245554444444444432  2469999


Q ss_pred             EECCch
Q 042784          239 LDNVGG  244 (356)
Q Consensus       239 ld~~g~  244 (356)
                      +.+.|.
T Consensus        84 i~nag~   89 (520)
T PRK06484         84 VNNAGV   89 (520)
T ss_pred             EECCCc
Confidence            998763

>PRK08643 acetoin reductase; Validated

Probab=97.23  E-value=0.0021  Score=56.29  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=55.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      ++++||+|++|++|..+++.+...|++|+.++++.++.+.+..++   +..   ...|..+...+.+.+.++.  .+++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999889999999998887665554332   221   1124444344444343332  24699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      ++|.+.|.
T Consensus        82 ~vi~~ag~   89 (256)
T PRK08643         82 VVVNNAGV   89 (256)
T ss_pred             EEEECCCC
Confidence            99998863

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0033  Score=55.80  Aligned_cols=79  Identities=22%  Similarity=0.313  Sum_probs=55.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .++||+|++|++|...++.+...|.+|+++++++++.+.+++.++...   ..|..+...+.+.+.+..  .+++|++|.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            579999999999999998888889999999999888777664443321   234444344444444321  246899999


Q ss_pred             CCch
Q 042784          241 NVGG  244 (356)
Q Consensus       241 ~~g~  244 (356)
                      +.|.
T Consensus        83 ~ag~   86 (276)
T PRK06482         83 NAGY   86 (276)
T ss_pred             CCCC
Confidence            8873

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.21  E-value=0.0075  Score=53.03  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCC---hHHHHHHHHHhCCCc----eeecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGS---DDNVKLLKEEFGYDD----AFNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s---~~~~~~~~~~~g~~~----v~~~~~~~~~~~~i~~~~--~  232 (356)
                      .|++++|+|++  +++|.++++.+...|++|+.++++   +++.+.+.+++....    ..|..+..+..+.+.++.  -
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            47899999996  799999998888899999988654   344454543442111    234444344444444432  1


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +.+|+++.|.|
T Consensus        86 g~ld~lv~nag   96 (257)
T PRK08594         86 GVIHGVAHCIA   96 (257)
T ss_pred             CCccEEEECcc
Confidence            56999998876

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.21  E-value=0.0031  Score=55.02  Aligned_cols=77  Identities=23%  Similarity=0.359  Sum_probs=55.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEEEEC
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVYLDN  241 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~vld~  241 (356)
                      +++|+|++|++|.+.+..+...|++|+++++++++.+.+.+.++...   ..|..+..++.+.+.++.  .+++|.++.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            68999999999999999998899999999999888777664555421   124444334444343332  2469999998


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        82 ag   83 (248)
T PRK10538         82 AG   83 (248)
T ss_pred             CC
Confidence            76

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.0017  Score=54.26  Aligned_cols=97  Identities=22%  Similarity=0.301  Sum_probs=69.0

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHH----HHHHhCCCceeecCChhhHHHHHHHHCC-
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKL----LKEEFGYDDAFNYNSEMSFDAALTKYFP-  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~----~~~~~g~~~v~~~~~~~~~~~~i~~~~~-  232 (356)
                      +...+++|++||=+|  +|.|+.++-+++..| +|+.+.+.++=.+.    ++ .+|...+.....  |-.   .-+.. 
T Consensus        66 ~~L~~~~g~~VLEIG--tGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~-~lg~~nV~v~~g--DG~---~G~~~~  136 (209)
T COG2518          66 QLLELKPGDRVLEIG--TGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLE-TLGYENVTVRHG--DGS---KGWPEE  136 (209)
T ss_pred             HHhCCCCCCeEEEEC--CCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHH-HcCCCceEEEEC--Ccc---cCCCCC
Confidence            567899999999999  678999999999998 99999977653333    44 677754432221  110   00111 


Q ss_pred             CCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          233 NGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       233 ~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      ..||.++-+.+.+ .-...++.|+++|+++..
T Consensus       137 aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         137 APYDRIIVTAAAPEVPEALLDQLKPGGRLVIP  168 (209)
T ss_pred             CCcCEEEEeeccCCCCHHHHHhcccCCEEEEE
Confidence            4699999887765 446788999999998864

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.20  E-value=0.004  Score=58.80  Aligned_cols=140  Identities=15%  Similarity=0.146  Sum_probs=86.3

Q ss_pred             eeeeEEEEEeccCCCCCCCCCEEEec-------------------cCCeeeEEeecCCcccccCCCCCCCCccccccccC
Q 042784           86 ILAFGIARVIRSKDSKYSDGDIVLRA-------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLG  146 (356)
Q Consensus        86 ~~~~G~v~~vg~~v~~~~~Gd~V~~~-------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~  146 (356)
                      .+..+.+..|+++.+..-+|+.-+++                   .+.|++++.++. .+ +.   --+++.    ..++
T Consensus        92 ~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~v-r~---~t~i~~----~~vS  162 (417)
T TIGR01035        92 ESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RV-RT---ETDISA----GAVS  162 (417)
T ss_pred             hHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hh-hh---hcCCCC----CCcC
Confidence            45667777788877765566654422                   145788877765 33 21   011111    1111


Q ss_pred             chhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHH
Q 042784          147 IPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDA  225 (356)
Q Consensus       147 ~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~  225 (356)
                      .+....-.+. +.....++++|+|.|+ |.+|..+++.++..|+ +|+++.++.++.+.+.+.+|.. .+++   .++.+
T Consensus       163 v~~~Av~la~-~~~~~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~---~~l~~  236 (417)
T TIGR01035       163 ISSAAVELAE-RIFGSLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AVKF---EDLEE  236 (417)
T ss_pred             HHHHHHHHHH-HHhCCccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-EeeH---HHHHH
Confidence            1211111222 2233356899999997 9999999999999995 8999999988866444477764 3333   23333


Q ss_pred             HHHHHCCCCceEEEECCchh
Q 042784          226 ALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       226 ~i~~~~~~~~d~vld~~g~~  245 (356)
                      .+.     ++|+||+|++.+
T Consensus       237 ~l~-----~aDvVi~aT~s~  251 (417)
T TIGR01035       237 YLA-----EADIVISSTGAP  251 (417)
T ss_pred             HHh-----hCCEEEECCCCC
Confidence            332     589999999874

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK08589 short chain dehydrogenase; Validated

Probab=97.19  E-value=0.0028  Score=56.19  Aligned_cols=79  Identities=15%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+|+++++|.++++.+...|++|++++++ ++.+.+.+++   +..   ...|..+..++.+.+.++.  -+.+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            47899999999999999998888889999999988 4433322233   321   1234444334444333332  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        84 d~li~~Ag   91 (272)
T PRK08589         84 DVLFNNAG   91 (272)
T ss_pred             CEEEECCC
Confidence            99999886

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0026  Score=55.50  Aligned_cols=80  Identities=20%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|..+++.+...|++|+.+++++++.+.+.+.+   +..   ...|..+..++...+.+..  .+++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   84 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI   84 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4688999999999999999888888999999998876654443232   211   1234444333333333221  1369


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        85 d~vi~~ag   92 (250)
T PRK07774         85 DYLVNNAA   92 (250)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.19  E-value=0.0033  Score=55.19  Aligned_cols=79  Identities=22%  Similarity=0.302  Sum_probs=56.4

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-c--eeecCChhhHHHHHHHHC--CCCceEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-D--AFNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      +.+++|+|++|++|..+++.+...|++|+.++++.++.+.+.++++.. .  ..|..+..++.+.+.++.  -+.+|+++
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   85 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILF   85 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            678999999999999999999889999999998888777666455432 1  123334334444343332  24699999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      .+.|
T Consensus        86 ~~ag   89 (257)
T PRK07067         86 NNAA   89 (257)
T ss_pred             ECCC
Confidence            9876

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.18  E-value=0.0029  Score=57.67  Aligned_cols=80  Identities=18%  Similarity=0.230  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCc----eeecCC-hhhHHHHHHHHCCC-
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYDD----AFNYNS-EMSFDAALTKYFPN-  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~~----v~~~~~-~~~~~~~i~~~~~~-  233 (356)
                      .|.+++|+||++++|.+.++.+...|++|+.+++++++.+.+.+++    +...    ..|..+ ..+..+.+.+..++ 
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            5899999999999999988888788999999999998876654332    2111    234432 12333344443332 


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      .+|+++++.|
T Consensus       132 didilVnnAG  141 (320)
T PLN02780        132 DVGVLINNVG  141 (320)
T ss_pred             CccEEEEecC
Confidence            5779998876

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0026  Score=57.54  Aligned_cols=80  Identities=26%  Similarity=0.253  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCc----eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYDD----AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~~----v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+.+|+|+||+|++|..+++.+...|++|++++++.++.+.+.+++    +...    ..|..+..++.+.+.++.  -+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~   94 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP   94 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999999888888999999998877655433222    1111    124444334443344332  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|++|.+.|
T Consensus        95 ~iD~li~nAg  104 (306)
T PRK06197         95 RIDLLINNAG  104 (306)
T ss_pred             CCCEEEECCc
Confidence            6999999887

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0042  Score=54.76  Aligned_cols=81  Identities=20%  Similarity=0.305  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCC-ce--eecCChhhHHHHHHHHC-CCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF--GYD-DA--FNYNSEMSFDAALTKYF-PNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~--g~~-~v--~~~~~~~~~~~~i~~~~-~~~~d~  237 (356)
                      ++.+++|+||+|++|...+..+...|++|+++++++++.+.+..++  +.. ..  .|..+..++.+.+.... -+.+|+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~   83 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV   83 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence            4678999999999999999988889999999999888776665343  111 11  23333233332222221 256999


Q ss_pred             EEECCch
Q 042784          238 YLDNVGG  244 (356)
Q Consensus       238 vld~~g~  244 (356)
                      ++.+.|.
T Consensus        84 lv~~ag~   90 (263)
T PRK09072         84 LINNAGV   90 (263)
T ss_pred             EEECCCC
Confidence            9998874

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.17  E-value=0.0031  Score=55.50  Aligned_cols=78  Identities=26%  Similarity=0.369  Sum_probs=53.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCce--eecCChhhHHHHHHHHC--CCCceEEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDDA--FNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~v--~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      +++|+|+++++|.++++.+...|++|+.+++++++.+.+.+++   +....  .|..+..++.+.+.+..  -+++|+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            6899999999999999888889999999998887765554333   22112  24444344444444332  24699999


Q ss_pred             ECCch
Q 042784          240 DNVGG  244 (356)
Q Consensus       240 d~~g~  244 (356)
                      .+.|.
T Consensus        82 ~naG~   86 (259)
T PRK08340         82 WNAGN   86 (259)
T ss_pred             ECCCC
Confidence            98873

>PRK09242 tropinone reductase; Provisional

Probab=97.17  E-value=0.0031  Score=55.29  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCCc---eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF-----GYDD---AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~-----g~~~---v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+.+++|+|++|++|..+++.+...|++|++++++.++.+.+.+++     +...   ..|..+..++.+.+.+..  -+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999998887765554332     2211   124444333333333321  24


Q ss_pred             CceEEEECCch
Q 042784          234 GIDVYLDNVGG  244 (356)
Q Consensus       234 ~~d~vld~~g~  244 (356)
                      ++|+++.+.|.
T Consensus        88 ~id~li~~ag~   98 (257)
T PRK09242         88 GLHILVNNAGG   98 (257)
T ss_pred             CCCEEEECCCC
Confidence            69999999874

>PRK08862 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0021  Score=55.49  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc-e--eecCChhhHHHHHH---HHCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD-A--FNYNSEMSFDAALT---KYFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~i~---~~~~~~  234 (356)
                      .|.+++|+|+++++|.+.+..+...|++|+.+.+++++.+.+.++   .+... .  .|..+..++.+.+.   +..++.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999988888999999999888876554322   34321 1  23334333333333   322337


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        84 iD~li~nag   92 (227)
T PRK08862         84 PDVLVNNWT   92 (227)
T ss_pred             CCEEEECCc
Confidence            999999986

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0027  Score=55.67  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=53.0

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHH-HHHHHHH---hCC-C-ce--eecCChhhHHHHHHHHC-
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDN-VKLLKEE---FGY-D-DA--FNYNSEMSFDAALTKYF-  231 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~-~~~~~~~---~g~-~-~v--~~~~~~~~~~~~i~~~~-  231 (356)
                      +..+.+|+|+||+|++|.+.++-+... |++|+++++++++ .+.+.++   .+. . ++  .|..+..++.+.+.+.. 
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence            456789999999999999988776666 5899999988765 4333222   232 1 12  34444333333344332 


Q ss_pred             CCCceEEEECCch
Q 042784          232 PNGIDVYLDNVGG  244 (356)
Q Consensus       232 ~~~~d~vld~~g~  244 (356)
                      .+++|+++.+.|.
T Consensus        85 ~g~id~li~~ag~   97 (253)
T PRK07904         85 GGDVDVAIVAFGL   97 (253)
T ss_pred             cCCCCEEEEeeec
Confidence            2579999987764

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.16  E-value=0.0043  Score=56.41  Aligned_cols=94  Identities=17%  Similarity=0.238  Sum_probs=62.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce-eecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA-FNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v-~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +|+|+||+|-+|...+..+...|.+|.+++++.++...+. ..+...+ .|..+..++.+.+     .++|+||++++..
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~-~~~v~~v~~Dl~d~~~l~~al-----~g~d~Vi~~~~~~   75 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK-EWGAELVYGDLSLPETLPPSF-----KGVTAIIDASTSR   75 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh-hcCCEEEECCCCCHHHHHHHH-----CCCCEEEECCCCC
Confidence            6999999999999999888888999999998877665554 4455322 1344323343333     3589999987531


Q ss_pred             -------------hHHHHHHhcccCC--EEEEEecc
Q 042784          246 -------------MLEAVLNHVNVHA--RIILCGMI  266 (356)
Q Consensus       246 -------------~~~~~~~~l~~~G--~~v~~g~~  266 (356)
                                   .....++.++..|  +++.++..
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         76 PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence                         1123444444444  78877653

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.16  E-value=0.0043  Score=54.30  Aligned_cols=80  Identities=25%  Similarity=0.372  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+|++|++|...++.+...|.+|+++++++++.+.+..++   +..   ...|..+..++.+.+.++.  .+++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            3679999999999999999888888999999998887765543232   322   1224444344433333322  2369


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        83 d~vi~~a~   90 (258)
T PRK12429         83 DILVNNAG   90 (258)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0041  Score=55.20  Aligned_cols=80  Identities=14%  Similarity=0.093  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC-----CC-ce--eecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG-----YD-DA--FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g-----~~-~v--~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+.++||+|++|++|..+++.+...|++|+.+++++++.+...+++.     .. .+  .|..+..++...+.+..  .+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999999999999999988776554432321     11 12  24444334444444332  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|++|.+.|
T Consensus        86 ~~d~li~~ag   95 (276)
T PRK05875         86 RLHGVVHCAG   95 (276)
T ss_pred             CCCEEEECCC
Confidence            6899999887

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.16  E-value=0.0026  Score=55.78  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=78.6

Q ss_pred             hhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHH
Q 042784          148 PGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFD  224 (356)
Q Consensus       148 ~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~  224 (356)
                      +=..+...+.+..++++|++||=+|  -|-|.+++.+|+..|++|++++-|++..+.+++   +.|...-+...- .++ 
T Consensus        56 AQ~~k~~~~~~kl~L~~G~~lLDiG--CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l-~d~-  131 (283)
T COG2230          56 AQRAKLDLILEKLGLKPGMTLLDIG--CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL-QDY-  131 (283)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeC--CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEe-ccc-
Confidence            3456667777789999999999999  356888999999999999999999998877764   344431111100 111 


Q ss_pred             HHHHHHCCCCceEEEE-----CCch----hhHHHHHHhcccCCEEEEEecccc
Q 042784          225 AALTKYFPNGIDVYLD-----NVGG----KMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld-----~~g~----~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                         +.+. +.||-|+-     .+|.    ..+..+.+.|+++|++++......
T Consensus       132 ---rd~~-e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~  180 (283)
T COG2230         132 ---RDFE-EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP  180 (283)
T ss_pred             ---cccc-cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence               1111 23777753     4454    267888899999999987766554

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0036  Score=55.73  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=54.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCC--C-c--eeecCChhhHHHHHHHHC--CCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGY--D-D--AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~--~-~--v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      +.++||+||+|++|...+..+...|++|+++++++++.+.+.+.   .+.  . .  ..|..+..++.+ +.+..  -++
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~~   81 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIGR   81 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcCC
Confidence            57899999999999999988888899999999887766554322   221  1 1  224554344444 44432  246


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|+++.|.|.
T Consensus        82 id~vv~~ag~   91 (280)
T PRK06914         82 IDLLVNNAGY   91 (280)
T ss_pred             eeEEEECCcc
Confidence            8999999873

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.15  E-value=0.0036  Score=54.96  Aligned_cols=80  Identities=20%  Similarity=0.334  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+|++|++|...++.+...|++|++++++.++.+.+.+.+   +..   ...|..+..++...+.++.  .+++
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~i   90 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHV   90 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999888889999999998887766554332   221   1234444344433333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |.++.+.|
T Consensus        91 d~vi~~ag   98 (259)
T PRK08213         91 DILVNNAG   98 (259)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0037  Score=54.98  Aligned_cols=78  Identities=22%  Similarity=0.435  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCC-ce--eecCChhhHHHHHHHHCCCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYD-DA--FNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~-~v--~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      .+.+++|+|++|++|..+++.+...|++|+++++++++.+.+.+++    +.. ..  .|..+..++.+.+.+.  +.+|
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~--g~id   83 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEA--GDID   83 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHh--CCCC
Confidence            3789999999999999999888889999999998887766544333    221 12  2334333444434332  4699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++.+.|
T Consensus        84 ~lv~~ag   90 (259)
T PRK06125         84 ILVNNAG   90 (259)
T ss_pred             EEEECCC
Confidence            9999887

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0045  Score=53.68  Aligned_cols=80  Identities=19%  Similarity=0.281  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC----ceeecCC--h---hhHHHHHHHHC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD----DAFNYNS--E---MSFDAALTKYF  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~----~v~~~~~--~---~~~~~~i~~~~  231 (356)
                      .+.+++|+|++|++|...++.+...|++|+++++++++.+.+.+++   +..    ...|..+  .   ..+.+.+.+..
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~   84 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT   84 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence            4679999999999999999888889999999999888766554332   211    1123321  1   22333344333


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                      ++.+|.+|.+.|
T Consensus        85 ~~~id~vi~~ag   96 (239)
T PRK08703         85 QGKLDGIVHCAG   96 (239)
T ss_pred             CCCCCEEEEecc
Confidence            356899999887

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=97.14  E-value=0.0043  Score=56.34  Aligned_cols=79  Identities=15%  Similarity=0.246  Sum_probs=55.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCC----c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYD----D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~----~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      +.+++|+|+++++|.++++.+...| ++|+.+++++++.+.+.++++..    .  ..|..+..++.+.+.++.  .+++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   82 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL   82 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5689999999999999988888889 89999998888776655455421    1  134544334443343332  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        83 D~lI~nAG   90 (314)
T TIGR01289        83 DALVCNAA   90 (314)
T ss_pred             CEEEECCC
Confidence            99999876

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.12  E-value=0.0046  Score=58.08  Aligned_cols=74  Identities=14%  Similarity=0.154  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      -.+.+|+|.|+ |++|.+++..+...|+ +|+++.++.++.+.+.++++...++.+   .++.+.+     ..+|+||.|
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~---~~l~~~l-----~~aDiVI~a  249 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL---SELPQLI-----KKADIIIAA  249 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH---HHHHHHh-----ccCCEEEEC
Confidence            45789999997 9999999999999997 899999998887777767763223333   2333333     348999999


Q ss_pred             Cchh
Q 042784          242 VGGK  245 (356)
Q Consensus       242 ~g~~  245 (356)
                      ++.+
T Consensus       250 T~a~  253 (414)
T PRK13940        250 VNVL  253 (414)
T ss_pred             cCCC
Confidence            9986

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.12  E-value=0.0052  Score=53.98  Aligned_cols=79  Identities=28%  Similarity=0.307  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|.++++.+...|++|+++++++...+... ++   +..   ...|..+..+..+.+.++.  -+++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAA-ELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHH-HHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            3689999999999999999988889999999987754333322 32   332   1235554334444444332  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        86 d~lv~nAg   93 (260)
T PRK12823         86 DVLINNVG   93 (260)
T ss_pred             eEEEECCc
Confidence            99999987

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.12  E-value=0.0039  Score=55.41  Aligned_cols=105  Identities=14%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHHhCCCc--eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSDD---NVKLLKEEFGYDD--AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~~---~~~~~~~~~g~~~--v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+++++|+||+  +++|.++++.+...|++|+.++++++   +.+.+.++++...  ..|..+..++.+.+.++.  -+.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~   83 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK   83 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            37899999996  79999999888889999999887742   3343433555432  235554344444444332  246


Q ss_pred             ceEEEECCchh------------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          235 IDVYLDNVGGK------------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       235 ~d~vld~~g~~------------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +|+++.+.|..                              ..+.++..++.+|+++.++...+
T Consensus        84 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~  147 (274)
T PRK08415         84 IDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGG  147 (274)
T ss_pred             CCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCC
Confidence            99999988730                              11334455667799988876443

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0049  Score=54.75  Aligned_cols=80  Identities=21%  Similarity=0.264  Sum_probs=56.0

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-c--eeecCChhhHHHHHHHHC--CCCceEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-D--AFNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      +.+|||+|++|++|..+++.+...|++|++++++.++.+.+.+.++.. .  ..|..+..++.+.+.++.  -+++|+++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999999999999999888888999999999888777665444322 1  134444344444333322  14689999


Q ss_pred             ECCch
Q 042784          240 DNVGG  244 (356)
Q Consensus       240 d~~g~  244 (356)
                      .|.|.
T Consensus        83 ~~ag~   87 (275)
T PRK08263         83 NNAGY   87 (275)
T ss_pred             ECCCC
Confidence            99873

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.12  E-value=0.0046  Score=54.90  Aligned_cols=80  Identities=16%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCChHHH---HHHHHHhCCCce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGSDDNV---KLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s~~~~---~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+|+++  ++|.++++.+...|++|+.++++++..   +.+.+++|....  .|..+..++.+.+.++.  -+.
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            478999999986  999999998888999999988765322   233224453322  35554344444444432  247


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        86 iD~lVnnAG   94 (271)
T PRK06505         86 LDFVVHAIG   94 (271)
T ss_pred             CCEEEECCc
Confidence            999999887

>PRK07985 oxidoreductase; Provisional

Probab=97.12  E-value=0.007  Score=54.41  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHH---HhCCC---ceeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD--DNVKLLKE---EFGYD---DAFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~--~~~~~~~~---~~g~~---~v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+.+++|+|++|++|.++++.+...|++|+++.++.  ++.+.+.+   +.|..   ...|..+..++.+.+.+..  -+
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  127 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG  127 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            467999999999999999998888999998876432  23333321   22322   1234444344444444432  24


Q ss_pred             CceEEEECCchh---------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          234 GIDVYLDNVGGK---------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       234 ~~d~vld~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ++|+++.+.|..                           ..+.++..++.+|+++.++....
T Consensus       128 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~  189 (294)
T PRK07985        128 GLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQA  189 (294)
T ss_pred             CCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchh
Confidence            699999887620                           11233444556789988876543

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0026  Score=55.51  Aligned_cols=73  Identities=27%  Similarity=0.391  Sum_probs=48.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHHHhCCCc--eeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLKEEFGYDD--AFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~~~~g~~~--v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +++++|+||+|++|.++++.+...|++|+++++++ ++.+... . +...  ..|..+..++    .+.. +++|+++++
T Consensus        14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~-~-~~~~~~~~D~~~~~~~----~~~~-~~iDilVnn   86 (245)
T PRK12367         14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESND-E-SPNEWIKWECGKEESL----DKQL-ASLDVLILN   86 (245)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhc-c-CCCeEEEeeCCCHHHH----HHhc-CCCCEEEEC
Confidence            68999999999999999998889999999998775 2222211 1 2111  2344432222    2222 359999999


Q ss_pred             Cch
Q 042784          242 VGG  244 (356)
Q Consensus       242 ~g~  244 (356)
                      .|.
T Consensus        87 AG~   89 (245)
T PRK12367         87 HGI   89 (245)
T ss_pred             Ccc
Confidence            873

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0033  Score=54.89  Aligned_cols=81  Identities=21%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCC-ce--eecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF--GYD-DA--FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~--g~~-~v--~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+.+++|+|++|++|..+++.+...|++|+.++++.++.+...+.+  +.. ..  .|..+..++.+.+.++.  -+++|
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   83 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD   83 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            3679999999999999999888788999999998877665544333  221 12  23444334444333332  14799


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      +++.+.|.
T Consensus        84 ~vi~~ag~   91 (252)
T PRK06138         84 VLVNNAGF   91 (252)
T ss_pred             EEEECCCC
Confidence            99999883

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0039  Score=54.30  Aligned_cols=79  Identities=20%  Similarity=0.319  Sum_probs=54.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCC-c--eeecCChhhHHHHHHHHC--CCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF-----GYD-D--AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      +.+++|+|++|++|...++.+...|++|+++++++++.+.+...+     +.. +  ..|..+..++.+.+.++.  -++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            568999999999999988888788999999998887766554222     211 1  134554344444444432  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        82 id~vi~~ag   90 (248)
T PRK08251         82 LDRVIVNAG   90 (248)
T ss_pred             CCEEEECCC
Confidence            999999887

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.11  E-value=0.0035  Score=54.64  Aligned_cols=80  Identities=19%  Similarity=0.241  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH--HHHHHHHhCCC-c--eeecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN--VKLLKEEFGYD-D--AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~--~~~~~~~~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+.++||+|++|++|..++..+...|++|+.+++++..  .+.++ +++.. .  ..|..+..++...+.+..  .+++|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVE-ALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHH-hcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            47899999999999999998888899999999876521  22233 44432 1  134444344444444332  24699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      +++.+.|.
T Consensus        83 ~li~~ag~   90 (248)
T TIGR01832        83 ILVNNAGI   90 (248)
T ss_pred             EEEECCCC
Confidence            99998863

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.004  Score=54.44  Aligned_cols=81  Identities=20%  Similarity=0.202  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|..+++.+...|++|+.+++++++.+.+.+   +.+.. ..  .|..+..++.+.+.+..  -+.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            47899999999999999998888889999999998876544432   23322 11  24443333333333321  1468


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+++.+.|.
T Consensus        86 d~li~~ag~   94 (253)
T PRK06172         86 DYAFNNAGI   94 (253)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0042  Score=54.29  Aligned_cols=79  Identities=20%  Similarity=0.330  Sum_probs=54.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      +.+++|+|++|++|.+.++.+...|++|+.++++.++.+.+.+++   +.. ..  .|..+..++.+.+.+..  -+.+|
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   87 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRLD   87 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999889999999998877665554332   221 11  24444333333333322  13589


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++.+.|
T Consensus        88 ~li~~ag   94 (252)
T PRK07035         88 ILVNNAA   94 (252)
T ss_pred             EEEECCC
Confidence            9999887

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.10  E-value=0.0035  Score=56.17  Aligned_cols=96  Identities=21%  Similarity=0.213  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CCCc-eeecCChhhHHHHHHHHCCCCce
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEF---GYDD-AFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~---g~~~-v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      ..++++||-.|. |. |..++.+++ .|+ +|++++.++...+.+++.+   +... +....  .+    +.....+.||
T Consensus       157 ~~~g~~VLDvGc-Gs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~--~~----~~~~~~~~fD  227 (288)
T TIGR00406       157 DLKDKNVIDVGC-GS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL--IY----LEQPIEGKAD  227 (288)
T ss_pred             cCCCCEEEEeCC-Ch-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe--cc----cccccCCCce
Confidence            457899999995 55 888877776 566 9999999988877776422   2211 11111  11    1112235799


Q ss_pred             EEEECCchh----hHHHHHHhcccCCEEEEEecc
Q 042784          237 VYLDNVGGK----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       237 ~vld~~g~~----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +|+.+....    .+..+.+.|+++|.++..|..
T Consensus       228 lVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       228 VIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             EEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            999866443    567778999999999987653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.002  Score=56.95  Aligned_cols=77  Identities=21%  Similarity=0.362  Sum_probs=54.0

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEEEC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYLDN  241 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vld~  241 (356)
                      +.+++|+|++|++|..+++.+...|++|++++++.++.+...   +.. ...|..+..++.+.+.+..  -+.+|++|.+
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~---~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~   80 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIP---GVELLELDVTDDASVQAAVDEVIARAGRIDVLVNN   80 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccC---CCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            568999999999999999888888999999998766543221   222 1235555445555444432  2469999999


Q ss_pred             Cch
Q 042784          242 VGG  244 (356)
Q Consensus       242 ~g~  244 (356)
                      .|.
T Consensus        81 ag~   83 (270)
T PRK06179         81 AGV   83 (270)
T ss_pred             CCC
Confidence            883

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.09  E-value=0.001  Score=58.79  Aligned_cols=106  Identities=22%  Similarity=0.256  Sum_probs=64.8

Q ss_pred             hHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHH
Q 042784          151 AAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAAL  227 (356)
Q Consensus       151 ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i  227 (356)
                      .-+..+.+.+++++|++||-.|.  |-|-.++.+++..|++|++++.|++..+.+++   +.|....+.... .++    
T Consensus        49 ~k~~~~~~~~~l~~G~~vLDiGc--GwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~-~D~----  121 (273)
T PF02353_consen   49 RKLDLLCEKLGLKPGDRVLDIGC--GWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRL-QDY----  121 (273)
T ss_dssp             HHHHHHHTTTT--TT-EEEEES---TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE-S-G----
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-eec----
Confidence            33445566788999999999994  47888899999999999999999998888764   334321111110 111    


Q ss_pred             HHHCCCCceEEEE-----CCchh----hHHHHHHhcccCCEEEEEe
Q 042784          228 TKYFPNGIDVYLD-----NVGGK----MLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       228 ~~~~~~~~d~vld-----~~g~~----~~~~~~~~l~~~G~~v~~g  264 (356)
                      +++. ..||.|+.     .+|.+    .+..+.+.|+|+|+++.-.
T Consensus       122 ~~~~-~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  122 RDLP-GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             GG----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             cccC-CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            1222 26898864     34432    5788889999999987543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.09  E-value=0.0041  Score=53.86  Aligned_cols=80  Identities=23%  Similarity=0.334  Sum_probs=54.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      +.+++|+|++|++|..++..+...|++|+++++++++.+.+.+++   +..   ...|..+..++.+.+++..  -+++|
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   86 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSID   86 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCcc
Confidence            578999999999999999888889999999998877655433222   321   1123344344444444432  24699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      ++|.+.|.
T Consensus        87 ~vi~~ag~   94 (239)
T PRK07666         87 ILINNAGI   94 (239)
T ss_pred             EEEEcCcc
Confidence            99998863

>PRK06720 hypothetical protein; Provisional

Probab=97.09  E-value=0.0054  Score=50.23  Aligned_cols=80  Identities=19%  Similarity=0.312  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|+++++|...+..+...|++|+++++++++.+.+.+++   +.. .  ..|..+..++.+.+.+..  -+++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999888888999999998876654432232   332 1  123333233333332211  2468


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        95 DilVnnAG  102 (169)
T PRK06720         95 DMLFQNAG  102 (169)
T ss_pred             CEEEECCC
Confidence            99998877

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.08  E-value=0.0043  Score=54.36  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc----eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD----AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~----v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|++++|+||+  +++|.++++.+...|++|+.++++++..+.++ ++....    ..|..+..+..+.+.++.  -+.+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQ-KLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHH-hhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            47899999998  79999999888889999999887744334444 332211    124444333333333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        85 D~lv~nAg   92 (252)
T PRK06079         85 DGIVHAIA   92 (252)
T ss_pred             CEEEEccc
Confidence            99999876

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.08  E-value=0.00095  Score=63.87  Aligned_cols=94  Identities=16%  Similarity=0.167  Sum_probs=60.9

Q ss_pred             hCCCCCCCEEE----EEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCC
Q 042784          159 LGQPKSGSNVF----VSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       159 ~~~~~~g~~Vl----V~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ..++++|+++|    |+||+|++|.+++++++..|++|+++..++.+....+ ..+.. .++|.+. -...+.+...   
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~d~~~-~~~~~~l~~~---  102 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAGW-GDRFGALVFDATG-ITDPADLKAL---  102 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccCc-CCcccEEEEECCC-CCCHHHHHHH---
Confidence            46678999998    9999999999999999999999999875555333322 22333 3455443 1222222221   


Q ss_pred             CceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          234 GIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       234 ~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                                ...+..+++.|.++|+++.++...
T Consensus       103 ----------~~~~~~~l~~l~~~griv~i~s~~  126 (450)
T PRK08261        103 ----------YEFFHPVLRSLAPCGRVVVLGRPP  126 (450)
T ss_pred             ----------HHHHHHHHHhccCCCEEEEEcccc
Confidence                      024455667777777777776543

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0041  Score=54.76  Aligned_cols=80  Identities=19%  Similarity=0.302  Sum_probs=54.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      +.++||+|++|++|..+++.+...|++|+++++++++.+.+.+.+   +..   ...|..+...+.+.+.+..  -+++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            357999999999999999988899999999998877655443222   322   1224444344444444332  13699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      +++.|.|.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99999874

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.08  E-value=0.0044  Score=53.61  Aligned_cols=79  Identities=13%  Similarity=0.193  Sum_probs=53.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH-HHHHHHhCCCc-eeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV-KLLKEEFGYDD-AFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~-~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      +.++||+|++|++|..+++.+...|++|+++++++++. +.++ ..|... ..|..+..++.+.+.++.  -+++|+++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~   80 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLR-QAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH   80 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHH-HcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence            46899999999999999998888999999999776543 3333 445321 234444334444444332  146999999


Q ss_pred             CCch
Q 042784          241 NVGG  244 (356)
Q Consensus       241 ~~g~  244 (356)
                      +.|.
T Consensus        81 ~ag~   84 (236)
T PRK06483         81 NASD   84 (236)
T ss_pred             CCcc
Confidence            8873

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0044  Score=54.31  Aligned_cols=75  Identities=19%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCC---ceeecCChhhHHHHHHHHCCCCceEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYD---DAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      +.++||+|++|++|..+++.+...|++|+++++++++.+.+++   ..+..   ...|..+...    +.+....++|++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----~~~~~~~~id~v   77 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAID----RAQAAEWDVDVL   77 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHH----HHHHhcCCCCEE
Confidence            4689999999999999999999999999999988776655542   22322   1124443222    233223479999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      |.+.|
T Consensus        78 i~~ag   82 (257)
T PRK09291         78 LNNAG   82 (257)
T ss_pred             EECCC
Confidence            99987

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=97.07  E-value=0.077  Score=48.38  Aligned_cols=75  Identities=11%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHhCCCc--e--eecCChhhHHHHHHHHCCCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEEFGYDD--A--FNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~~g~~~--v--~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      .|.+|||+||+|.+|...++.+...|  .+|++.+++..+...+.+.+....  +  .|..+...+.+.+     +++|+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~-----~~iD~   77 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRAL-----RGVDY   77 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHH-----hcCCE
Confidence            36799999999999999888777665  589888876655443332332211  1  2444423333333     24899


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ||.+.|
T Consensus        78 Vih~Ag   83 (324)
T TIGR03589        78 VVHAAA   83 (324)
T ss_pred             EEECcc
Confidence            999876

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.06  E-value=0.0046  Score=54.31  Aligned_cols=81  Identities=21%  Similarity=0.278  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCce---eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDA---FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v---~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+|++|++|..+++.+...|++|+++++++++.+.+.++   .+....   .|..+...+.+.+.+..  -+.+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999999888665444323   343311   24444333333333221  1468


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+++.|.|.
T Consensus        86 d~vi~~ag~   94 (262)
T PRK13394         86 DILVSNAGI   94 (262)
T ss_pred             CEEEECCcc
Confidence            999998873

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0069  Score=53.10  Aligned_cols=80  Identities=23%  Similarity=0.308  Sum_probs=54.8

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc----eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD----AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~----v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      +.+++|+|++|++|...+..+...|++|++++++.++.+.+.+.+....    ..|..+..++...+.+..  -+++|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4689999999999999998888889999999988877665553442211    234444333433333321  1469999


Q ss_pred             EECCch
Q 042784          239 LDNVGG  244 (356)
Q Consensus       239 ld~~g~  244 (356)
                      +.+.|.
T Consensus        82 i~~ag~   87 (257)
T PRK07074         82 VANAGA   87 (257)
T ss_pred             EECCCC
Confidence            999873

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.05  E-value=0.0046  Score=53.18  Aligned_cols=105  Identities=23%  Similarity=0.253  Sum_probs=74.8

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHCCCCc
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      .....+|++||=.+  +|+|-.+..+++..|. +|++++.|++.++.+++...-...  +.+-. .+ ++.+. +....|
T Consensus        46 ~~~~~~g~~vLDva--~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~-~d-Ae~LP-f~D~sF  120 (238)
T COG2226          46 LLGIKPGDKVLDVA--CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV-GD-AENLP-FPDNSF  120 (238)
T ss_pred             hhCCCCCCEEEEec--CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEE-ec-hhhCC-CCCCcc
Confidence            34556899998776  7889999999999987 999999999999888864432110  21111 11 11121 224579


Q ss_pred             eEEEECCch-------hhHHHHHHhcccCCEEEEEecccc
Q 042784          236 DVYLDNVGG-------KMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       236 d~vld~~g~-------~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      |+|..+.|-       ..+.+..|.|+|+|+++.+.....
T Consensus       121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226         121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            999888774       278899999999999988776554

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.04  E-value=0.0051  Score=54.68  Aligned_cols=80  Identities=15%  Similarity=0.199  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|.++++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+..++...+.++.  -+++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   88 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC   88 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999998899999999998877655443332   322 1  123443333333333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        89 d~li~~ag   96 (278)
T PRK08277         89 DILINGAG   96 (278)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.04  E-value=0.0049  Score=53.96  Aligned_cols=80  Identities=23%  Similarity=0.412  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|.++++.+...|++|+.+++++++.+.+.+++   +.. ..  .|..+..++.+.+.++.  -+++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            4789999999999999999888889999999998877655443232   221 11  23344333333333321  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        88 d~vi~~ag   95 (254)
T PRK08085         88 DVLINNAG   95 (254)
T ss_pred             CEEEECCC
Confidence            99999987

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.04  E-value=0.0057  Score=56.36  Aligned_cols=95  Identities=14%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhC---C-CceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFG---Y-DDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g---~-~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .+|||.|+ |++|..+++.+.+.| .+|++.+++.++...+. ...   . ...+|-.+.+.+.+.|++     +|+||+
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~-~~~~~~v~~~~vD~~d~~al~~li~~-----~d~VIn   74 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIA-ELIGGKVEALQVDAADVDALVALIKD-----FDLVIN   74 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hhccccceeEEecccChHHHHHHHhc-----CCEEEE
Confidence            47999997 999999999999888 59999999999998887 443   1 234555543455555543     599999


Q ss_pred             CCchhhHHHHH-HhcccCCEEEEEeccc
Q 042784          241 NVGGKMLEAVL-NHVNVHARIILCGMIS  267 (356)
Q Consensus       241 ~~g~~~~~~~~-~~l~~~G~~v~~g~~~  267 (356)
                      |.....-..++ .|++.+-.++......
T Consensus        75 ~~p~~~~~~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          75 AAPPFVDLTILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             eCCchhhHHHHHHHHHhCCCEEEcccCC
Confidence            99876444555 5666666777765543

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0059  Score=52.97  Aligned_cols=82  Identities=17%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      ..+.+++|+|++|++|..++..+...|.+|+++++++++.+.+.+.+   +..   ...|..+..++...+.++.  -+.
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            34678999999999999999999889999999998887665554222   221   1124444344434343322  136


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|+++.+.|.
T Consensus        84 id~lv~~ag~   93 (241)
T PRK07454         84 PDVLINNAGM   93 (241)
T ss_pred             CCEEEECCCc
Confidence            9999999873

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.03  E-value=0.0061  Score=48.90  Aligned_cols=102  Identities=18%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             HHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHH
Q 042784          152 AWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       152 a~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      .+.++.+. ...-.|++++|.|= |-+|.-+++.++.+|++|++++..+-+.-.+. .-|.. +.      .+.+.+   
T Consensus         9 ~~d~i~r~t~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-~dGf~-v~------~~~~a~---   76 (162)
T PF00670_consen    9 LVDGIMRATNLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAA-MDGFE-VM------TLEEAL---   76 (162)
T ss_dssp             HHHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-HTT-E-EE-------HHHHT---
T ss_pred             HHHHHHhcCceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhh-hcCcE-ec------CHHHHH---
Confidence            34444433 33467999999995 99999999999999999999998887766665 44543 22      233333   


Q ss_pred             CCCCceEEEECCchhh--HHHHHHhcccCCEEEEEeccc
Q 042784          231 FPNGIDVYLDNVGGKM--LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       231 ~~~~~d~vld~~g~~~--~~~~~~~l~~~G~~v~~g~~~  267 (356)
                        ...|+++.++|...  -.+.++.|+++..+..+|...
T Consensus        77 --~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d  113 (162)
T PF00670_consen   77 --RDADIFVTATGNKDVITGEHFRQMKDGAILANAGHFD  113 (162)
T ss_dssp             --TT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSST
T ss_pred             --hhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCc
Confidence              24799999999863  467888999988888777543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.00  E-value=0.0065  Score=53.16  Aligned_cols=79  Identities=15%  Similarity=0.259  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH--HHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN--VKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~--~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+++++|+|+++++|.++++.+...|++|+++++++..  .+.++ +.+..   ...|..+..++.+.+.+..  -+++|
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD   85 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVE-ALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID   85 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHH-HcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence            47899999999999999999988999999988765422  22333 44432   1234444344444444332  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++.+.|
T Consensus        86 ~lv~~ag   92 (251)
T PRK12481         86 ILINNAG   92 (251)
T ss_pred             EEEECCC
Confidence            9999887

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.99  E-value=0.012  Score=53.29  Aligned_cols=100  Identities=18%  Similarity=0.164  Sum_probs=69.7

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      +...++++++||..|+ | .|..++.+++..+.  +|++++.+++..+.+++   .+|.+.+....  .+..+.+..  .
T Consensus        74 ~~L~i~~g~~VLDIG~-G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~--gD~~~~~~~--~  147 (322)
T PRK13943         74 EWVGLDKGMRVLEIGG-G-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC--GDGYYGVPE--F  147 (322)
T ss_pred             HhcCCCCCCEEEEEeC-C-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe--CChhhcccc--c
Confidence            3456789999999995 5 69999999998864  79999999887766653   35654333222  233222211  1


Q ss_pred             CCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          233 NGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       233 ~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      +.+|+|+.+.+.. .....++.|+++|+++..
T Consensus       148 ~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        148 APYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            4699999988764 445678899999998763

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.98  E-value=0.0075  Score=52.23  Aligned_cols=81  Identities=22%  Similarity=0.343  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc-e--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD-A--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      ++.++||+|++|++|...++.+...|.+|+++++++++.+.+...   .+... .  .|..+...+...+.++.  -+.+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            357899999999999999988888899999999888775544322   33321 1  34444334444333321  1358


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |.++.+.|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999998864

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.98  E-value=0.008  Score=52.87  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCChHH---HHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSDDN---VKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~~~---~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|++++|+|++  +++|.++++.+...|++|+.++++++.   .+.+.++++....  .|..+..++.+.+.++.  -+.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            47899999997  499999998888899999998877543   2333334443222  24444334443333332  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        89 ld~lv~nAg   97 (258)
T PRK07533         89 LDFLLHSIA   97 (258)
T ss_pred             CCEEEEcCc
Confidence            999999876

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.97  E-value=0.005  Score=54.05  Aligned_cols=79  Identities=16%  Similarity=0.216  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|.+.++.+...|++|++++++ ++.+.+.+   +.+..   ...|..+..++...+.+..  .+.+
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999998899999998876 33333221   23332   1234444333333333332  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        93 d~li~~ag  100 (258)
T PRK06935         93 DILVNNAG  100 (258)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.96  E-value=0.0075  Score=53.14  Aligned_cols=80  Identities=21%  Similarity=0.250  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGSDD---NVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|++++|+|+++  ++|.++++.+...|++|+..+++++   ..+.+.++.|....  .|..+..+..+.+.++.  -+.
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS   86 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999986  8999998888888999998887642   22333323353322  35555344444443332  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        87 iDilVnnag   95 (260)
T PRK06603         87 FDFLLHGMA   95 (260)
T ss_pred             ccEEEEccc
Confidence            999999876

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.96  E-value=0.0062  Score=54.08  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCCh---HHHHHHHHHhCCCc--eeecCChhhHHHHHHHHC--CC
Q 042784          163 KSGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSD---DNVKLLKEEFGYDD--AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~---~~~~~~~~~~g~~~--v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      -.++++||+|++  +++|.++++.+...|++|+.+.+++   ++.+.+.++++...  ..|..+..+..+.+.++.  -+
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   87 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWG   87 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcC
Confidence            357899999996  7999999998888999998887654   33444443555321  234444344444333332  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      .+|+++.+.|
T Consensus        88 ~iD~lv~nAG   97 (272)
T PRK08159         88 KLDFVVHAIG   97 (272)
T ss_pred             CCcEEEECCc
Confidence            6999999876

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.95  E-value=0.0049  Score=50.00  Aligned_cols=91  Identities=19%  Similarity=0.293  Sum_probs=62.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC--CceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY--DDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~--~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|.|+||+|-+|...++=|+.+|-.|+++++++++....+ ..-.  ..++|.   ..+.+.+     .|+|+||++.|.
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~-~~~i~q~Difd~---~~~a~~l-----~g~DaVIsA~~~   72 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ-GVTILQKDIFDL---TSLASDL-----AGHDAVISAFGA   72 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc-cceeecccccCh---hhhHhhh-----cCCceEEEeccC
Confidence            5889999999999999999999999999999998886542 1111  123333   2222222     479999998875


Q ss_pred             h----------hHHHHHHhcccCC--EEEEEecc
Q 042784          245 K----------MLEAVLNHVNVHA--RIILCGMI  266 (356)
Q Consensus       245 ~----------~~~~~~~~l~~~G--~~v~~g~~  266 (356)
                      .          ..+.....|+.-|  ++..+|-.
T Consensus        73 ~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGA  106 (211)
T COG2910          73 GASDNDELHSKSIEALIEALKGAGVPRLLVVGGA  106 (211)
T ss_pred             CCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence            2          2334555666533  67777753

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.008  Score=52.87  Aligned_cols=80  Identities=21%  Similarity=0.265  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH--HhCCC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE--EFGYD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~--~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+.+++|+|++|++|...++.+...|++|+.++++++..+.+++  +.+..   ...|..+..++.+.+.++.  -+.+|
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id   84 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRID   84 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999999888899999999987654333321  22322   1234444333333333321  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      ++|.+.|
T Consensus        85 ~vi~~ag   91 (263)
T PRK08226         85 ILVNNAG   91 (263)
T ss_pred             EEEECCC
Confidence            9999887

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.022  Score=49.33  Aligned_cols=80  Identities=19%  Similarity=0.165  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHH---HhCCC-ce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKE---EFGYD-DA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~---~~g~~-~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      ++.+++|+|++|++|...++.+...|++|+.+.++.. +.+.+.+   +.+.. ..  .|..+..++.+.+.+..  -++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR   83 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999998887765432 2222221   23321 11  23344333444333321  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        84 id~vi~~ag   92 (245)
T PRK12937         84 IDVLVNNAG   92 (245)
T ss_pred             CCEEEECCC
Confidence            999999887

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.93  E-value=0.0038  Score=50.72  Aligned_cols=79  Identities=19%  Similarity=0.300  Sum_probs=51.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCC--hHHHHHHHHH---hCCC-ce--eecCChhhHHHHHHHHC--CCC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGS--DDNVKLLKEE---FGYD-DA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s--~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      ++++|+||++++|...++.+...|. +|+.+.++  .++.+.+.++   .+.. .+  .|..+..++.+.+.+..  .+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4799999999999998877777777 88888887  4544444223   3421 11  23344344444444433  357


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|++|.|.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999998873

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.92  E-value=0.0041  Score=50.89  Aligned_cols=97  Identities=23%  Similarity=0.264  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceee-c-----------------CC--hhhHH
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFN-Y-----------------NS--EMSFD  224 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~-~-----------------~~--~~~~~  224 (356)
                      .-+|+|+|+ |.+|+.|+.+++.+|++|+..+...++.+... ..++..+.. +                 ..  ...+.
T Consensus        20 p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   20 PAKVVVTGA-GRVGQGAAEIAKGLGAEVVVPDERPERLRQLE-SLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH-HTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHhHCCCEEEeccCCHHHHHhhh-cccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            478999997 99999999999999999999999988888887 666643322 1                 00  12344


Q ss_pred             HHHHHHCCCCceEEEECC---ch--h--hHHHHHHhcccCCEEEEEecccc
Q 042784          225 AALTKYFPNGIDVYLDNV---GG--K--MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~---g~--~--~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +.+..     +|++|-+.   +.  +  .-.+.++.|+++..++.+....+
T Consensus        98 ~~i~~-----~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~g  143 (168)
T PF01262_consen   98 EFIAP-----ADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQG  143 (168)
T ss_dssp             HHHHH------SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGGT
T ss_pred             HHHhh-----CcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecCC
Confidence            44433     79988643   11  1  33566778898888888876544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.92  E-value=0.0075  Score=52.84  Aligned_cols=81  Identities=21%  Similarity=0.297  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|..++..+...|++|+.+++++++.+.+.++   .+..   ...|..+..++...+.+..  -+.+
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   89 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL   89 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            488999999999999999988888899999999887765544322   3321   1224444334444333332  1468


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |.++.+.|.
T Consensus        90 d~vi~~ag~   98 (256)
T PRK06124         90 DILVNNVGA   98 (256)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.92  E-value=0.01  Score=51.51  Aligned_cols=80  Identities=25%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ce--eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DA--FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.+++|+|++|++|..+++.+...|++|+...++.++.+.+...++.. ..  .|..+..++.+.+.+..  -+++|.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL   84 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            3679999999999999999888889999988887777766554355432 11  23333233333333321  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        85 i~~ag   89 (245)
T PRK12936         85 VNNAG   89 (245)
T ss_pred             EECCC
Confidence            99987

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.92  E-value=0.0079  Score=52.71  Aligned_cols=80  Identities=21%  Similarity=0.268  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|++|++|..++..+...|++|+.+++++++.+.+.+++   +.. .  ..|..+..++.+.+.++.  -+++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~   89 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV   89 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            3789999999999999999988889999999998877665543222   322 1  234444333433333322  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        90 d~li~~ag   97 (255)
T PRK06113         90 DILVNNAG   97 (255)
T ss_pred             CEEEECCC
Confidence            99999887

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.91  E-value=0.0063  Score=53.40  Aligned_cols=80  Identities=18%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH----HHHHHHhCC--CceeecCChhhHHHHHHHHC--CCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV----KLLKEEFGY--DDAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~----~~~~~~~g~--~~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      -.|+.|||+||++|+|.+.++=...+|++++..+.+++..    +.++ +.|-  ..+.|.++.+++.....+..  -|.
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~-~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIR-KIGEAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHH-hcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            3689999999999999887777777788888887665433    3344 3341  12334444344444333332  136


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++++++|
T Consensus       115 V~ILVNNAG  123 (300)
T KOG1201|consen  115 VDILVNNAG  123 (300)
T ss_pred             ceEEEeccc
Confidence            999999988

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0051  Score=53.97  Aligned_cols=80  Identities=18%  Similarity=0.167  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH--HhCCC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE--EFGYD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~--~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+.++||+||+|++|..+++.+...|++|+++++++++.+..++  +.+..   ...|..+..++...+.++.  -+++|
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   85 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRID   85 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence            36899999999999999998888899999989888776544331  22322   1223444333443343332  24799


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      ++|.+.|
T Consensus        86 ~vi~~ag   92 (258)
T PRK08628         86 GLVNNAG   92 (258)
T ss_pred             EEEECCc
Confidence            9999988

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.013  Score=51.12  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHHHh---CCC-ce--eecCChhh---HHHHHHH----
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKEEF---GYD-DA--FNYNSEMS---FDAALTK----  229 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~~~---g~~-~v--~~~~~~~~---~~~~i~~----  229 (356)
                      .+.+++|+|++|++|.++++.+...|++|++.. +++++.+.+..++   +.. ..  .|..+..+   +.+.+.+    
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   82 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence            468999999999999999999999999988764 4444443332222   321 11  23332222   2222322    


Q ss_pred             HCC-CCceEEEECCchh-----------hH---------------HHHHHhcccCCEEEEEecccc
Q 042784          230 YFP-NGIDVYLDNVGGK-----------ML---------------EAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       230 ~~~-~~~d~vld~~g~~-----------~~---------------~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ..+ +++|+++.+.|..           .+               +.++..++..|+++.++....
T Consensus        83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~  148 (252)
T PRK12747         83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAAT  148 (252)
T ss_pred             hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccc
Confidence            112 3799999988731           11               234455666789998877554

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=96.91  E-value=0.0052  Score=54.38  Aligned_cols=82  Identities=23%  Similarity=0.401  Sum_probs=57.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC---CC------ceeecCChhhHHHHHH---HH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG---YD------DAFNYNSEMSFDAALT---KY  230 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g---~~------~v~~~~~~~~~~~~i~---~~  230 (356)
                      -.|..++|+|++.++|.+++..+...|++|+.+.+++++.+..+.++.   ..      .+.|..+..+..+.+.   +.
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~   85 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK   85 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence            358899999999999999999999999999999999988766654322   11      2223333233332222   22


Q ss_pred             CCCCceEEEECCch
Q 042784          231 FPNGIDVYLDNVGG  244 (356)
Q Consensus       231 ~~~~~d~vld~~g~  244 (356)
                      ..+++|+++++.|.
T Consensus        86 ~~GkidiLvnnag~   99 (270)
T KOG0725|consen   86 FFGKIDILVNNAGA   99 (270)
T ss_pred             hCCCCCEEEEcCCc
Confidence            24579999998873

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.89  E-value=0.0077  Score=52.43  Aligned_cols=81  Identities=21%  Similarity=0.237  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|...+..+...|++|++++++.++.....+.   .+.. ..  .|..+..++.+.+.+..  -+.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            467999999999999999988888899999999886654433222   2221 11  23444333444333322  1368


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |.++.+.|.
T Consensus        85 d~vi~~ag~   93 (251)
T PRK12826         85 DILVANAGI   93 (251)
T ss_pred             CEEEECCCC
Confidence            999998753

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.88  E-value=0.0085  Score=56.14  Aligned_cols=75  Identities=23%  Similarity=0.341  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ce--eecCChhhHHHHHHHHCCCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DA--FNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .+++++|+||+|++|.+.++.+...|++|+++++++++.+...+..+.. ..  .|..+..++    .+.. +++|++|.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v----~~~l-~~IDiLIn  251 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAAL----AELL-EKVDILII  251 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHH----HHHh-CCCCEEEE
Confidence            4789999999999999999888889999999998776654322111111 11  244432222    2222 36999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus       252 nAG  254 (406)
T PRK07424        252 NHG  254 (406)
T ss_pred             CCC
Confidence            876

>PRK06398 aldose dehydrogenase; Validated

Probab=96.88  E-value=0.0015  Score=57.57  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC--CCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF--PNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~--~~~~d~vld~  241 (356)
                      .|.++||+|++|++|.+++..+...|++|+++++++.+...+.     ....|..+..++.+.+.++.  -+.+|+++.+
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~-----~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~   79 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDVD-----YFKVDVSNKEQVIKGIDYVISKYGRIDILVNN   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCceE-----EEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            3689999999999999999999999999999987754322110     11234444344444444332  2469999998


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        80 Ag   81 (258)
T PRK06398         80 AG   81 (258)
T ss_pred             CC
Confidence            87

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.87  E-value=0.0084  Score=52.69  Aligned_cols=80  Identities=13%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC--CChHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAA--AGGVGMFAGQLAKLKGCKVVGSTGSD--DNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~--~g~vG~~~i~la~~~G~~V~~~~~s~--~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+++++|+|+  ++++|.++++.+...|++|+.++++.  +..+.+.++++..   ...|..+..++.+.+.++.  -++
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~   85 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDG   85 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999998  79999999988888999999987553  3344444345432   1234444333443333322  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        86 iD~li~nAG   94 (256)
T PRK07889         86 LDGVVHSIG   94 (256)
T ss_pred             CcEEEEccc
Confidence            999999876

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=96.87  E-value=0.0084  Score=52.84  Aligned_cols=81  Identities=23%  Similarity=0.321  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCCChHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHH----hCC---CceeecCChhhHHHHHHH-HCCC
Q 042784          163 KSGSNVFVSAAAGGVGMFA-GQLAKLKGCKVVGSTGSDDNVKLLKEE----FGY---DDAFNYNSEMSFDAALTK-YFPN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~-i~la~~~G~~V~~~~~s~~~~~~~~~~----~g~---~~v~~~~~~~~~~~~i~~-~~~~  233 (356)
                      +-|++.+|+||+.++|.+- -+||+ .|.+|+.+.|+++|++.++++    .++   ..++|+.+....-+.+++ +.+-
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~  125 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGL  125 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCC
Confidence            4579999999999999875 46666 999999999999998877654    332   245677763323444555 4455


Q ss_pred             CceEEEECCch
Q 042784          234 GIDVYLDNVGG  244 (356)
Q Consensus       234 ~~d~vld~~g~  244 (356)
                      .+-+.++|+|-
T Consensus       126 ~VgILVNNvG~  136 (312)
T KOG1014|consen  126 DVGILVNNVGM  136 (312)
T ss_pred             ceEEEEecccc
Confidence            78889999883

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.87  E-value=0.012  Score=51.52  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=52.8

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----hCCC--cee--ecCChhhHHHHHHHHC--CCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE----FGYD--DAF--NYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~----~g~~--~v~--~~~~~~~~~~~i~~~~--~~~  234 (356)
                      ++++||+|++|++|..++..+...|++|+.++++..+.+.+.++    .+..  ..+  |..+..++...+.++.  -++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999988888899999999887665444322    2311  112  3343333333333322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        82 id~vv~~ag   90 (259)
T PRK12384         82 VDLLVYNAG   90 (259)
T ss_pred             CCEEEECCC
Confidence            999999887

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0072  Score=54.08  Aligned_cols=82  Identities=21%  Similarity=0.240  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh---------HHHHHHHHHh---CCCc---eeecCChhhHHHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD---------DNVKLLKEEF---GYDD---AFNYNSEMSFDAAL  227 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~---------~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i  227 (356)
                      -.+.+++|+|+++++|.++++.+...|++|++++++.         ++.+.+.+++   |...   ..|..+..++.+.+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            3578999999999999999988888999998887654         4433332232   3321   12444433444444


Q ss_pred             HHHC--CCCceEEEECCch
Q 042784          228 TKYF--PNGIDVYLDNVGG  244 (356)
Q Consensus       228 ~~~~--~~~~d~vld~~g~  244 (356)
                      .++.  -+.+|+++.+.|.
T Consensus        84 ~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            3332  2469999998873

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.86  E-value=0.024  Score=43.33  Aligned_cols=100  Identities=20%  Similarity=0.247  Sum_probs=66.2

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ...+.++++|+-.|. |. |..+..+++..+ .+|++++.++...+.+++   .++...+.-..  .+....+.. ..+.
T Consensus        14 ~~~~~~~~~vldlG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~   88 (124)
T TIGR02469        14 KLRLRPGDVLWDIGA-GS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVE--GDAPEALED-SLPE   88 (124)
T ss_pred             HcCCCCCCEEEEeCC-CC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEe--ccccccChh-hcCC
Confidence            445677889999995 44 999999999875 599999999888777653   33433221111  111111111 1246


Q ss_pred             ceEEEECCch----hhHHHHHHhcccCCEEEEE
Q 042784          235 IDVYLDNVGG----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       235 ~d~vld~~g~----~~~~~~~~~l~~~G~~v~~  263 (356)
                      +|+|+...+.    ..++.+.+.|+++|.++..
T Consensus        89 ~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        89 PDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            9999976543    2688899999999998864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.85  E-value=0.019  Score=47.06  Aligned_cols=100  Identities=20%  Similarity=0.293  Sum_probs=68.7

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ...+++|+.++=.|+  +.|..++++++..- .+|++++++++..+..++   .||.+.+....  .+..+.+.++.  .
T Consensus        29 ~L~~~~g~~l~DIGa--GtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~--g~Ap~~L~~~~--~  102 (187)
T COG2242          29 KLRPRPGDRLWDIGA--GTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE--GDAPEALPDLP--S  102 (187)
T ss_pred             hhCCCCCCEEEEeCC--CccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe--ccchHhhcCCC--C
Confidence            355899998877775  34667788884443 399999999888777653   67865333222  23333444332  5


Q ss_pred             ceEEEECCch---hhHHHHHHhcccCCEEEEEe
Q 042784          235 IDVYLDNVGG---KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       235 ~d~vld~~g~---~~~~~~~~~l~~~G~~v~~g  264 (356)
                      +|.+|---|.   ..++.++..|+++|++|.-.
T Consensus       103 ~daiFIGGg~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         103 PDAIFIGGGGNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence            8999865554   37899999999999998543

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.014  Score=50.67  Aligned_cols=77  Identities=18%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+++|+|++|++|...+..+...|++|+++++++++.+.+.+.....  ...|..+..++.+.+.++. ...|.++.+.|
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~~d~~i~~ag   80 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLP-FIPELWIFNAG   80 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcc-cCCCEEEEcCc
Confidence            57999999999999988888888999999999888877665222111  1235555455555554432 23577666654

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.83  E-value=0.011  Score=51.80  Aligned_cols=80  Identities=19%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      .+.+++|+|++|++|.++++.+...|++|+++.++ ++..+.++ ..+.. ...|..+..++.+.+.++.  -+++|++|
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR-EKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-hCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            36899999999999999999888899998877644 33444444 32332 1234444344444444332  24699999


Q ss_pred             ECCch
Q 042784          240 DNVGG  244 (356)
Q Consensus       240 d~~g~  244 (356)
                      .|.|.
T Consensus        85 ~~ag~   89 (255)
T PRK06463         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            98863

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.83  E-value=0.0096  Score=52.50  Aligned_cols=81  Identities=17%  Similarity=0.243  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.+++|+|+++++|..++..+...|++|+++++++++.+.+.+.+   |...   ..|..+..++.+.+.+..  -+.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5689999999999999988888888999999998877665443232   4321   234444333333333322  1469


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+++.+.|.
T Consensus        89 d~li~~ag~   97 (265)
T PRK07097         89 DILVNNAGI   97 (265)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0092  Score=52.26  Aligned_cols=81  Identities=19%  Similarity=0.173  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHHH---hCCC-ce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKEE---FGYD-DA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~~---~g~~-~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+|++|++|.++++.+...|++|++++++++ ..+.+.++   .+.. ..  .|..+..++.+.+.+..  -+.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999899999999987643 22222212   2322 11  24444344444444332  246


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|++|.+.|.
T Consensus        87 id~li~~ag~   96 (254)
T PRK06114         87 LTLAVNAAGI   96 (254)
T ss_pred             CCEEEECCCC
Confidence            9999999873

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.82  E-value=0.0083  Score=52.76  Aligned_cols=80  Identities=14%  Similarity=0.240  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHH----hCCC---ceeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEE----FGYD---DAFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+++++|+||++++|.+++..+...|++|+.+.+ ++++.+.+.++    .+..   ...|..+..++.+.+.++.  -+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   86 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD   86 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999988899999988764 34443332212    2322   1224444344444443332  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      .+|+++.+.|
T Consensus        87 ~id~lv~nAg   96 (260)
T PRK08416         87 RVDFFISNAI   96 (260)
T ss_pred             CccEEEECcc
Confidence            6999999875

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.82  E-value=0.011  Score=51.43  Aligned_cols=82  Identities=16%  Similarity=0.209  Sum_probs=53.5

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc--e--eecC--ChhhHHHHHHHHC-
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD--A--FNYN--SEMSFDAALTKYF-  231 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~--v--~~~~--~~~~~~~~i~~~~-  231 (356)
                      ..++.+++|+|++|++|...++.+...|++|++++++.++.+.+.+++   +...  +  .|..  +..++.+.+..+. 
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            457889999999999999999888888999999998877654443232   3211  1  2222  2123333222222 


Q ss_pred             -CCCceEEEECCc
Q 042784          232 -PNGIDVYLDNVG  243 (356)
Q Consensus       232 -~~~~d~vld~~g  243 (356)
                       .+.+|.+|.+.|
T Consensus        89 ~~~~id~vi~~Ag  101 (247)
T PRK08945         89 QFGRLDGVLHNAG  101 (247)
T ss_pred             HhCCCCEEEECCc
Confidence             136999999876

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.023  Score=50.48  Aligned_cols=101  Identities=19%  Similarity=0.202  Sum_probs=62.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC-CCCceE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF-PNGIDV  237 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~-~~~~d~  237 (356)
                      +++++|+|+ |++|.+++..+. .|++|+.+++++++.+.+.+++   |..   ...|..+..++...+.++. -+++|+
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            357899997 899999888775 7999999998877665443333   322   1234444334444443321 246999


Q ss_pred             EEECCchh----h---------------HHHHHHhcccCCEEEEEeccc
Q 042784          238 YLDNVGGK----M---------------LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       238 vld~~g~~----~---------------~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ++.+.|..    .               ++.+...++.+|+++.++...
T Consensus        80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence            99998731    1               233344455667777666543

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.81  E-value=0.01  Score=49.31  Aligned_cols=105  Identities=14%  Similarity=0.262  Sum_probs=74.4

Q ss_pred             CCCEEEEEcC-CChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChh---hHHHHHHHHCCCCceEE
Q 042784          164 SGSNVFVSAA-AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEM---SFDAALTKYFPNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~-~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~---~~~~~i~~~~~~~~d~v  238 (356)
                      ....|||+|+ +||+|.+...-....|+.|+++.++-++...+..++|.. .-+|.++++   .+..++++.+.+..|+.
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            3467899976 788999888878888999999999988877666577853 224444433   35556666667789999


Q ss_pred             EECCchh-----------hH--------------HHHHH--hcccCCEEEEEecccc
Q 042784          239 LDNVGGK-----------ML--------------EAVLN--HVNVHARIILCGMISQ  268 (356)
Q Consensus       239 ld~~g~~-----------~~--------------~~~~~--~l~~~G~~v~~g~~~~  268 (356)
                      ++..|-+           ..              .+++.  +.+..|++|.+|...+
T Consensus        86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~  142 (289)
T KOG1209|consen   86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAG  142 (289)
T ss_pred             EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeE
Confidence            9977731           11              22222  3588899999998665

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.01  Score=52.55  Aligned_cols=78  Identities=19%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc-e--eecCChhhHHHHHHHHC--CCCceEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD-A--FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      +++|+|++|++|...+..+...|++|+.++++.++.+.+.+.   .+... .  .|..+..++.+.+.++.  .+++|++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l   81 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI   81 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            799999999999999988888899999999887765544322   23221 1  23333233333333322  2469999


Q ss_pred             EECCch
Q 042784          239 LDNVGG  244 (356)
Q Consensus       239 ld~~g~  244 (356)
                      |.+.|.
T Consensus        82 I~~ag~   87 (270)
T PRK05650         82 VNNAGV   87 (270)
T ss_pred             EECCCC
Confidence            999873

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.80  E-value=0.0088  Score=52.70  Aligned_cols=80  Identities=10%  Similarity=0.196  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC--CChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH---HHhCCCc--eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAA--AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK---EEFGYDD--AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~--~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~---~~~g~~~--v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+||  ++++|.+.++.+...|++|+.+.+.+...+.++   +++|...  ..|..+..+..+.+.+..  -++
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDG   84 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            4789999996  579999999888889999988765543333332   2334322  234444344444443332  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        85 iD~lVnnAG   93 (261)
T PRK08690         85 LDGLVHSIG   93 (261)
T ss_pred             CcEEEECCc
Confidence            999999876

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.80  E-value=0.0081  Score=52.44  Aligned_cols=80  Identities=19%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      +.++||+|++|++|...+..+...|.+|+++++++++.+.+.+.+   +..   ...|..+..++...+.++.  -+++|
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            358999999999999999888888999999998887766655332   221   1124444344444333322  24589


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      ++|.+.|.
T Consensus        81 ~vi~~a~~   88 (255)
T TIGR01963        81 ILVNNAGI   88 (255)
T ss_pred             EEEECCCC
Confidence            99988763

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.79  E-value=0.016  Score=47.24  Aligned_cols=97  Identities=16%  Similarity=0.112  Sum_probs=65.4

Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGG-VGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~-vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      .-.|+...++...+.....--.|.+|+|.|+ |. +|..++..++..|++|+++.++.+                     
T Consensus        22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------   79 (168)
T cd01080          22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALLLNRNATVTVCHSKTK---------------------   79 (168)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHhhCCCEEEEEECCch---------------------
Confidence            4556666666666665544457899999998 65 699899999999999888875421                     


Q ss_pred             hHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          222 SFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       222 ~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ++.+.+.     .+|+||-+++.+.+ -....++++-.++.++.+.
T Consensus        80 ~l~~~l~-----~aDiVIsat~~~~i-i~~~~~~~~~viIDla~pr  119 (168)
T cd01080          80 NLKEHTK-----QADIVIVAVGKPGL-VKGDMVKPGAVVIDVGINR  119 (168)
T ss_pred             hHHHHHh-----hCCEEEEcCCCCce-ecHHHccCCeEEEEccCCC
Confidence            2223333     38999999988642 2223466666666776643

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.0084  Score=52.43  Aligned_cols=75  Identities=20%  Similarity=0.232  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+++++|+|++|++|..+++.+...|++|+++++++++    . ..+..   ...|..+..++.+.+.++.  -+.+|++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~----~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE----T-VDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh----h-hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            47899999999999999999888899999999987654    1 22221   1234444334444443332  2468999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      |.+.|
T Consensus        80 i~~ag   84 (252)
T PRK07856         80 VNNAG   84 (252)
T ss_pred             EECCC
Confidence            99887

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.79  E-value=0.011  Score=51.41  Aligned_cols=80  Identities=20%  Similarity=0.254  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      ++.++||+|++|++|..+++.+...|++|+.++++.++.+.+.+.   .+.. .+  .|..+...+.+.+.++.  -+++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            368999999999999999998888999999999887766554422   2221 12  23334333433333322  1468


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        82 d~vi~~ag   89 (250)
T TIGR03206        82 DVLVNNAG   89 (250)
T ss_pred             CEEEECCC
Confidence            99999987

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.79  E-value=0.0083  Score=52.91  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceee---cC-----ChhhHHHHHHHHC
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFN---YN-----SEMSFDAALTKYF  231 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~---~~-----~~~~~~~~i~~~~  231 (356)
                      .+.++.-+++|+|++.++|++.+.-++..|+.|..+.++.+++..+++.++....+.   |.     +-...+..++++-
T Consensus        28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~  107 (331)
T KOG1210|consen   28 VKPKPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELR  107 (331)
T ss_pred             cccCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhh
Confidence            344666899999999999999999999999999999999999998887766422111   11     1123334444432


Q ss_pred             --CCCceEEEECCch
Q 042784          232 --PNGIDVYLDNVGG  244 (356)
Q Consensus       232 --~~~~d~vld~~g~  244 (356)
                        .+.+|.+|.|.|.
T Consensus       108 ~~~~~~d~l~~cAG~  122 (331)
T KOG1210|consen  108 DLEGPIDNLFCCAGV  122 (331)
T ss_pred             hccCCcceEEEecCc
Confidence              2469999999984

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.015  Score=51.53  Aligned_cols=80  Identities=16%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCc-e--eecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDD-A--FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~-v--~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      ..+++|+||+|++|...++.+...|++|++++++.++.+.+.+   ..+... .  .|..+..++.+.+.+..  -+++|
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   89 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEIE   89 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            4689999999999999998888889999999887766544332   223321 1  24444344444333321  14689


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      ++|.+.|.
T Consensus        90 ~vi~~Ag~   97 (274)
T PRK07775         90 VLVSGAGD   97 (274)
T ss_pred             EEEECCCc
Confidence            99998874

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.78  E-value=0.011  Score=52.56  Aligned_cols=110  Identities=14%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             hhhhHHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHH
Q 042784          148 PGFAAWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDA  225 (356)
Q Consensus       148 ~~~ta~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~  225 (356)
                      .+.....++.+. ..-..+.+++|+|+ |++|.+++..+...|+ +|+++.++.++.+.+.+.++....+...  .+..+
T Consensus       105 D~~G~~~~l~~~~~~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~--~~~~~  181 (278)
T PRK00258        105 DGIGFVRALEERLGVDLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELD--LELQE  181 (278)
T ss_pred             cHHHHHHHHHhccCCCCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeec--ccchh
Confidence            333444455431 22245789999997 9999999999999995 9999999998887776555432101110  11111


Q ss_pred             HHHHHCCCCceEEEECCchhhH------HHHHHhcccCCEEEEEec
Q 042784          226 ALTKYFPNGIDVYLDNVGGKML------EAVLNHVNVHARIILCGM  265 (356)
Q Consensus       226 ~i~~~~~~~~d~vld~~g~~~~------~~~~~~l~~~G~~v~~g~  265 (356)
                      .+     ..+|+|++|+.....      ......+++...++.+-.
T Consensus       182 ~~-----~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        182 EL-----ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             cc-----ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeec
Confidence            11     358999999864321      112356677777776644

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.78  E-value=0.02  Score=50.80  Aligned_cols=108  Identities=14%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             hHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHH
Q 042784          151 AAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       151 ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      ....++.+......+.+++|.|+ |++|.+++..+...|++|++..+++++.+.+.+.++........   .+.+    .
T Consensus       103 G~~~~l~~~~~~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~---~~~~----~  174 (270)
T TIGR00507       103 GLVSDLERLIPLRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAF---SMDE----L  174 (270)
T ss_pred             HHHHHHHhcCCCccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEe---chhh----h
Confidence            33344443233355789999997 99999999888888999999999888776665454321101111   1111    1


Q ss_pred             CCCCceEEEECCchhh---H---HHHHHhcccCCEEEEEecc
Q 042784          231 FPNGIDVYLDNVGGKM---L---EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       231 ~~~~~d~vld~~g~~~---~---~~~~~~l~~~G~~v~~g~~  266 (356)
                      .-..+|+||+|++...   .   ......++++..++.+...
T Consensus       175 ~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~  216 (270)
T TIGR00507       175 PLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYN  216 (270)
T ss_pred             cccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccC
Confidence            1135899999987531   1   1123456777777777553

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.0089  Score=54.04  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh----------HHHHHHHH---HhCCC---ceeecCChhhHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD----------DNVKLLKE---EFGYD---DAFNYNSEMSFDAAL  227 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~----------~~~~~~~~---~~g~~---~v~~~~~~~~~~~~i  227 (356)
                      .|.+++|+|+++++|.++++.+...|++|++++++.          ++.+.+.+   ..|..   ...|..+..++.+.+
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   86 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV   86 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            478999999999999999999988999999988762          23322221   33432   123444434444444


Q ss_pred             HHHC--CCCceEEEECC-c
Q 042784          228 TKYF--PNGIDVYLDNV-G  243 (356)
Q Consensus       228 ~~~~--~~~~d~vld~~-g  243 (356)
                      .++.  -+.+|+++.+. |
T Consensus        87 ~~~~~~~g~iDilVnnA~g  105 (305)
T PRK08303         87 ERIDREQGRLDILVNDIWG  105 (305)
T ss_pred             HHHHHHcCCccEEEECCcc
Confidence            3332  14699999988 5

>PRK04148 hypothetical protein; Provisional

Probab=96.77  E-value=0.01  Score=46.05  Aligned_cols=83  Identities=10%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      ..+.++++.|. | .|...+..+...|.+|++++.+++..+.++ +.+...+.+.--..++.  +.    +++|+++.+-
T Consensus        15 ~~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-~~~~~~v~dDlf~p~~~--~y----~~a~liysir   85 (134)
T PRK04148         15 GKNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAK-KLGLNAFVDDLFNPNLE--IY----KNAKLIYSIR   85 (134)
T ss_pred             ccCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHH-HhCCeEEECcCCCCCHH--HH----hcCCEEEEeC
Confidence            45688999996 7 887666666688999999999999999888 66765333211001110  11    3577887776


Q ss_pred             chh-hHHHHHHhc
Q 042784          243 GGK-MLEAVLNHV  254 (356)
Q Consensus       243 g~~-~~~~~~~~l  254 (356)
                      ... .....++..
T Consensus        86 pp~el~~~~~~la   98 (134)
T PRK04148         86 PPRDLQPFILELA   98 (134)
T ss_pred             CCHHHHHHHHHHH
Confidence            554 333333433

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.77  E-value=0.013  Score=51.68  Aligned_cols=80  Identities=19%  Similarity=0.284  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGSDD---NVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|.+++|+||++  ++|.++++.+...|++|+..+++++   ..+.+..+.+....  .|..+..++.+.+.+..  -+.
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   84 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK   84 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence            478999999975  8999998888889999998876632   22333322332212  34444344444444332  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        85 iD~linnAg   93 (262)
T PRK07984         85 FDGFVHSIG   93 (262)
T ss_pred             CCEEEECCc
Confidence            999999987

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.73  E-value=0.021  Score=49.81  Aligned_cols=79  Identities=22%  Similarity=0.282  Sum_probs=51.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHHhCCC-ce--eecCChhhHHHHHHH---HCCCCceE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEEFGYD-DA--FNYNSEMSFDAALTK---YFPNGIDV  237 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~i~~---~~~~~~d~  237 (356)
                      +.+++|+|++|++|..++..+...|++|+.+.+ ++++.+.+..+++.. .+  .|..+..++.+.+.+   ..+.++|+
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id~   84 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPITT   84 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCeE
Confidence            578999999999999999988889999887654 455555554345432 11  244443333333333   33335999


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ++.+.|
T Consensus        85 li~~ag   90 (253)
T PRK08642         85 VVNNAL   90 (253)
T ss_pred             EEECCC
Confidence            999875

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.72  E-value=0.02  Score=50.73  Aligned_cols=96  Identities=19%  Similarity=0.101  Sum_probs=68.3

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+....+..+....---.|.+|+|.|.+.-+|..+..++...|++|++..+..                     .++
T Consensus       137 ~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------------------~~l  195 (286)
T PRK14175        137 FVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------------------KDM  195 (286)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hhH
Confidence            45666556666665433234699999999966699999999999999998876321                     223


Q ss_pred             HHHHHHHCCCCceEEEECCchhh-HHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKM-LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.++     .+|+||-++|.+. +..  +.++++..++.+|...
T Consensus       196 ~~~~~-----~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~  233 (286)
T PRK14175        196 ASYLK-----DADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP  233 (286)
T ss_pred             HHHHh-----hCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence            33343     3899999999873 333  4688988888888754

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.71  E-value=0.011  Score=51.61  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHH---HhCCC-ce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKE---EFGYD-DA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      ++.+++|+||+|++|..++..+...|++|++. .++.++.+.+.+   +.+.. ..  .|..+..++...+.+..  -++
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999998899987764 555555433322   23332 11  24444344444343332  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        83 id~vi~~ag   91 (250)
T PRK08063         83 LDVFVNNAA   91 (250)
T ss_pred             CCEEEECCC
Confidence            999999887

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.019  Score=50.42  Aligned_cols=80  Identities=18%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+|++|++|..+++.+...|++|+++++. .++.+.+.+++   +..   ...|..+..++.+.+.+..  -++
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~   87 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGP   87 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999999999999998888899988877653 34443332222   332   1224444344444443322  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        88 iD~vi~~ag   96 (258)
T PRK09134         88 ITLLVNNAS   96 (258)
T ss_pred             CCEEEECCc
Confidence            999999987

>PLN02476 O-methyltransferase

Probab=96.69  E-value=0.031  Score=49.39  Aligned_cols=102  Identities=15%  Similarity=0.091  Sum_probs=70.9

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHC--
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYF--  231 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~--  231 (356)
                      ..+....++||=.|  +++|..++.+|+.++  .+|+.++.+++..+.+++   +.|..+.+.... .+..+.+.++.  
T Consensus       113 L~~~~~ak~VLEIG--T~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~-GdA~e~L~~l~~~  189 (278)
T PLN02476        113 LVQILGAERCIEVG--VYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH-GLAAESLKSMIQN  189 (278)
T ss_pred             HHHhcCCCeEEEec--CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-cCHHHHHHHHHhc
Confidence            45567789999998  678888889998774  389999999988777764   346543343332 34444454431  


Q ss_pred             --CCCceEEEECCch----hhHHHHHHhcccCCEEEEE
Q 042784          232 --PNGIDVYLDNVGG----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       232 --~~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~  263 (356)
                        .+.||.||--...    ..++.+++.|+++|.++.=
T Consensus       190 ~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        190 GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence              2479998744433    3688899999999998753

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.69  E-value=0.01  Score=59.69  Aligned_cols=81  Identities=22%  Similarity=0.336  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCc----eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYDD----AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~~----v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .++++||+|++|++|.++++.+...|++|++++++.++.+.+.+.+    +...    ..|..+..++.+.+.+..  -+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g  492 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG  492 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999988889999999998877665544332    3211    234444344444444332  24


Q ss_pred             CceEEEECCch
Q 042784          234 GIDVYLDNVGG  244 (356)
Q Consensus       234 ~~d~vld~~g~  244 (356)
                      ++|+++.+.|.
T Consensus       493 ~iDilV~nAG~  503 (676)
T TIGR02632       493 GVDIVVNNAGI  503 (676)
T ss_pred             CCcEEEECCCC
Confidence            79999999873

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.69  E-value=0.011  Score=51.98  Aligned_cols=80  Identities=18%  Similarity=0.297  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC--CChHHHHHHHHHHHCCCEEEEEeCC---hHHHHHHHHHhCCCc--eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAA--AGGVGMFAGQLAKLKGCKVVGSTGS---DDNVKLLKEEFGYDD--AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~--~g~vG~~~i~la~~~G~~V~~~~~s---~~~~~~~~~~~g~~~--v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+++++|+||  ++++|.++++.+...|++|+.+.+.   +++.+.+.++++...  ..|..+..++.+.+.++.  -+.
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG   84 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence            4789999996  5799999998888899999887543   334443433455322  234444344444444432  257


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        85 iD~lvnnAG   93 (260)
T PRK06997         85 LDGLVHSIG   93 (260)
T ss_pred             CcEEEEccc
Confidence            999999876

>PRK12743 oxidoreductase; Provisional

Probab=96.69  E-value=0.017  Score=50.68  Aligned_cols=79  Identities=22%  Similarity=0.279  Sum_probs=50.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHH---HhCCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKE---EFGYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      +++++|+|++|++|..+++.+...|++|+.+.+ +.++.+.+.+   ..|.. ..  .|..+..++...+.++.  -+.+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI   81 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            568999999999999999999999999988754 3343333321   33432 12  34444333333333321  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        82 d~li~~ag   89 (256)
T PRK12743         82 DVLVNNAG   89 (256)
T ss_pred             CEEEECCC
Confidence            99999887

>TIGR02415 23BDH acetoin reductases

Probab=96.69  E-value=0.014  Score=50.97  Aligned_cols=79  Identities=19%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCceE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      .+++|+|++|++|...++.+...|++|+.+.+++++.+.+.+++   +.. .  ..|..+..++.+.+.++.  .+.+|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            37999999999999999888899999999998876654443222   321 1  124444333433333332  136899


Q ss_pred             EEECCch
Q 042784          238 YLDNVGG  244 (356)
Q Consensus       238 vld~~g~  244 (356)
                      +|.+.|.
T Consensus        81 vi~~ag~   87 (254)
T TIGR02415        81 MVNNAGV   87 (254)
T ss_pred             EEECCCc
Confidence            9998873

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.68  E-value=0.0074  Score=51.10  Aligned_cols=100  Identities=19%  Similarity=0.201  Sum_probs=64.2

Q ss_pred             HHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHH---HhCCCce-eecCChhhHHHHHHHH
Q 042784          157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKE---EFGYDDA-FNYNSEMSFDAALTKY  230 (356)
Q Consensus       157 ~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~---~~g~~~v-~~~~~~~~~~~~i~~~  230 (356)
                      .+..++++|++||-.|  +|.|+.+.-+++..|.  +|+.++..++-.+.+++   .+|...+ +...+   ...-..+ 
T Consensus        65 l~~L~l~pg~~VLeIG--tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd---g~~g~~~-  138 (209)
T PF01135_consen   65 LEALDLKPGDRVLEIG--TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD---GSEGWPE-  138 (209)
T ss_dssp             HHHTTC-TT-EEEEES---TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES----GGGTTGG-
T ss_pred             HHHHhcCCCCEEEEec--CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc---hhhcccc-
Confidence            3467799999999999  6778889999988875  79999977765544443   4455422 22211   1111111 


Q ss_pred             CCCCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          231 FPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       231 ~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                       ...||.++-+.+-+ .-...++.|+++|++|..
T Consensus       139 -~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  139 -EAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             -G-SEEEEEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred             -CCCcCEEEEeeccchHHHHHHHhcCCCcEEEEE
Confidence             24699999888765 445677899999999863

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK09135 pteridine reductase; Provisional

Probab=96.68  E-value=0.015  Score=50.50  Aligned_cols=80  Identities=11%  Similarity=0.106  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHHh----CCC---ceeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKEEF----GYD---DAFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+.++||+|++|++|..+++.+...|++|++++++ +++.+.+...+    +..   ...|..+...+...+.+..  -+
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45789999999999999998888889999999875 33333332121    111   1224444333433333321  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+||.+.|
T Consensus        85 ~~d~vi~~ag   94 (249)
T PRK09135         85 RLDALVNNAS   94 (249)
T ss_pred             CCCEEEECCC
Confidence            6899999987

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.68  E-value=0.015  Score=50.95  Aligned_cols=79  Identities=19%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHHhCCC-c--eeecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD--NVKLLKEEFGYD-D--AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~--~~~~~~~~~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .|.+++|+|++|++|.++++.+...|++|+.++++..  ..+.++ +.+.. .  ..|..+..++.+.+.+..  .+.+|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVT-ALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHH-hcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            3789999999999999999999889999988765432  223333 33422 1  123333333333333322  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++.+.|
T Consensus        88 ~li~~Ag   94 (253)
T PRK08993         88 ILVNNAG   94 (253)
T ss_pred             EEEECCC
Confidence            9999887

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.68  E-value=0.013  Score=50.67  Aligned_cols=78  Identities=27%  Similarity=0.353  Sum_probs=49.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      +++||+|++|++|...++.+...|++|+++.+ ++++.+...+++   +..   ...|..+..++.+.+.++.  .+.+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID   80 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence            47899999999999999999889999988886 444433322122   211   1224444333433333322  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +||.+.|
T Consensus        81 ~vi~~ag   87 (242)
T TIGR01829        81 VLVNNAG   87 (242)
T ss_pred             EEEECCC
Confidence            9999987

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.67  E-value=0.035  Score=47.07  Aligned_cols=106  Identities=15%  Similarity=0.169  Sum_probs=75.5

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      ..++.....+||=.|  +.+|..++.+|..+.  .+++.++.++++.+.+++   +.|....+......+..+.+.+...
T Consensus        53 ~L~~~~~~k~iLEiG--T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~  130 (219)
T COG4122          53 LLARLSGPKRILEIG--TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLD  130 (219)
T ss_pred             HHHHhcCCceEEEee--cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccC
Confidence            345667888999998  788999999999886  389999999998888775   3455543222110245555555334


Q ss_pred             CCceEEE-ECCch---hhHHHHHHhcccCCEEEEEec
Q 042784          233 NGIDVYL-DNVGG---KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 ~~~d~vl-d~~g~---~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +.||.|| |+--.   ..++.+++.|+++|.++.=..
T Consensus       131 ~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         131 GSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             CCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence            6799997 55443   388999999999998885443

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.67  E-value=0.01  Score=51.99  Aligned_cols=101  Identities=18%  Similarity=0.137  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-CCC-ceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF-GYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~-g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .+.+|||+||+|.+|..+++.+...|.+|+++.+++++........ +.. ...|..+.   .+.+.+..+.++|+||.+
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~l~~~~~~~~d~vi~~   92 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEG---SDKLVEAIGDDSDAVICA   92 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCC---HHHHHHHhhcCCCEEEEC
Confidence            3679999999999999999888888999999998877654332111 121 11244321   112222222369999998


Q ss_pred             Cchh--------------hHHHHHHhcccC--CEEEEEeccc
Q 042784          242 VGGK--------------MLEAVLNHVNVH--ARIILCGMIS  267 (356)
Q Consensus       242 ~g~~--------------~~~~~~~~l~~~--G~~v~~g~~~  267 (356)
                      .|..              ....+++.++..  ++++.++...
T Consensus        93 ~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~  134 (251)
T PLN00141         93 TGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSIL  134 (251)
T ss_pred             CCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            7641              123344444332  6788876643

>PRK07069 short chain dehydrogenase; Validated

Probab=96.67  E-value=0.013  Score=50.98  Aligned_cols=77  Identities=22%  Similarity=0.333  Sum_probs=51.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHHhC----CCc----eeecCChhhHHHHHHHHC--CCCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKEEFG----YDD----AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~~~g----~~~----v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      +++|+|++|++|...++.+...|++|++++++ .++.+.+.+.+.    ...    ..|..+..++.+.+.+..  -+++
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   80 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL   80 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            38999999999999998888889999999977 555544432332    211    225555444444444332  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        81 d~vi~~ag   88 (251)
T PRK07069         81 SVLVNNAG   88 (251)
T ss_pred             cEEEECCC
Confidence            99999987

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.66  E-value=0.027  Score=48.38  Aligned_cols=102  Identities=19%  Similarity=0.242  Sum_probs=73.8

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      ...++.+|++|+=.|  .|.|.+++.||+..|.  +|+.....++..+.+++.   +|....+.... .|..+.+.   +
T Consensus        88 ~~~gi~pg~rVlEAG--tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~-~Dv~~~~~---~  161 (256)
T COG2519          88 ARLGISPGSRVLEAG--TGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL-GDVREGID---E  161 (256)
T ss_pred             HHcCCCCCCEEEEcc--cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe-cccccccc---c
Confidence            357899999998877  5679999999998876  999999999988887653   34433232222 23322221   2


Q ss_pred             CCceEEEECCchh--hHHHHHHhcccCCEEEEEec
Q 042784          233 NGIDVYLDNVGGK--MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 ~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ..+|.++==...+  .++.+.+.|+++|.++.+..
T Consensus       162 ~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         162 EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence            3689887656554  88999999999999988744

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.052  Score=47.26  Aligned_cols=103  Identities=15%  Similarity=0.175  Sum_probs=63.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHH----HHHHHHhCCC-ce--eecCChhhHHHHHHHHC--CCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNV----KLLKEEFGYD-DA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~----~~~~~~~g~~-~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      +.++||+|++|++|...++-+...|++|+.+.++ .++.    ..++ +.+.. ..  .|..+..++...+.++.  -++
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVK-ENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH-HcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            6799999999999999998888899988776643 2222    2222 33332 11  24444333333333322  146


Q ss_pred             ceEEEECCchh--------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          235 IDVYLDNVGGK--------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       235 ~d~vld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +|++|.+.|..                          ..+.+...++..|+++.++....
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  144 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG  144 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc
Confidence            99999998730                          12234445567789998877544

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.65  E-value=0.014  Score=52.66  Aligned_cols=80  Identities=25%  Similarity=0.385  Sum_probs=57.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC----Cc----eeecCChhh---HHHHHHHHC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY----DD----AFNYNSEMS---FDAALTKYF  231 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~----~~----v~~~~~~~~---~~~~i~~~~  231 (356)
                      -.|.+++|+|+++|+|..++.-+...|++|+..+++.++.+.+++++..    ..    ..|..+..+   +.+.+.+. 
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~-  111 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK-  111 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc-
Confidence            4568999999999999999999999999999999998877777655442    21    123333223   33333321 


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                      ....|+.|.++|
T Consensus       112 ~~~ldvLInNAG  123 (314)
T KOG1208|consen  112 EGPLDVLINNAG  123 (314)
T ss_pred             CCCccEEEeCcc
Confidence            246899999877

>PRK08264 short chain dehydrogenase; Validated

Probab=96.65  E-value=0.011  Score=51.18  Aligned_cols=75  Identities=21%  Similarity=0.283  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC-c--eeecCChhhHHHHHHHHCCCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYD-D--AFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      .+.+++|+||+|++|..+++.+...|+ +|++++++.++.+.    .+.. .  ..|..+..++.+.+.+.  +.+|++|
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~vi   78 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGPRVVPLQLDVTDPASVAAAAEAA--SDVTILV   78 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCCceEEEEecCCCHHHHHHHHHhc--CCCCEEE
Confidence            467899999999999999999999999 99999987765442    2221 1  13444434444433332  3589999


Q ss_pred             ECCch
Q 042784          240 DNVGG  244 (356)
Q Consensus       240 d~~g~  244 (356)
                      .+.|.
T Consensus        79 ~~ag~   83 (238)
T PRK08264         79 NNAGI   83 (238)
T ss_pred             ECCCc
Confidence            98875

>PRK08309 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.23  Score=40.97  Aligned_cols=90  Identities=12%  Similarity=0.094  Sum_probs=55.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ce--eecCChhhHHHHHHHHC--CCCceEEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DA--FNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v--~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      +++|+||+ ++|..+++.+...|++|++.++++++.+.+...++..   ..  .|..+..++...+.+..  .+++|.++
T Consensus         2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv   80 (177)
T PRK08309          2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAV   80 (177)
T ss_pred             EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            58999997 5555566666678999999998887766655334321   11  36666555555555432  35789999


Q ss_pred             ECCchhhHHHHHHhcccC
Q 042784          240 DNVGGKMLEAVLNHVNVH  257 (356)
Q Consensus       240 d~~g~~~~~~~~~~l~~~  257 (356)
                      +.+-...-.......+..
T Consensus        81 ~~vh~~~~~~~~~~~~~~   98 (177)
T PRK08309         81 AWIHSSAKDALSVVCREL   98 (177)
T ss_pred             EeccccchhhHHHHHHHH
Confidence            887665333333333333

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.017  Score=50.46  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=52.0

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC------
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF------  231 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~------  231 (356)
                      +.+++|+|++|++|..+++.+...|++|++. .++.++.+.+.+.+   +.. .+  .|..+..++.+.+.+..      
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~~   85 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQIR   85 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhccc
Confidence            5799999999999999998888889988764 56665554333232   221 11  24444444444444321      


Q ss_pred             --CCCceEEEECCch
Q 042784          232 --PNGIDVYLDNVGG  244 (356)
Q Consensus       232 --~~~~d~vld~~g~  244 (356)
                        .+++|++|.+.|.
T Consensus        86 ~~~~~id~vi~~ag~  100 (254)
T PRK12746         86 VGTSEIDILVNNAGI  100 (254)
T ss_pred             cCCCCccEEEECCCC
Confidence              1369999998873

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.63  E-value=0.037  Score=48.24  Aligned_cols=75  Identities=23%  Similarity=0.332  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.++||+|++|++|...++.+...|++|++++++.     .. ..+..   ...|..+...+.+.+.+..  .+.+|++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----LT-QEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL   80 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----hh-hcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            468999999999999999998888999999998765     22 22321   1124444344444444332  2469999


Q ss_pred             EECCch
Q 042784          239 LDNVGG  244 (356)
Q Consensus       239 ld~~g~  244 (356)
                      |.+.|.
T Consensus        81 i~~ag~   86 (252)
T PRK08220         81 VNAAGI   86 (252)
T ss_pred             EECCCc
Confidence            998874

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.0095  Score=51.33  Aligned_cols=75  Identities=23%  Similarity=0.234  Sum_probs=51.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g  243 (356)
                      +.+++|+|++|++|...++.+...|.+|+++.++.++ ...    ......|..+..++.+.+.++. ..++|++|.+.|
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~-~~~----~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag   77 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID-DFP----GELFACDLADIEQTAATLAQINEIHPVDAIVNNVG   77 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc-ccC----ceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            5789999999999999999988999999999877654 110    1112245554344444444433 236899999887


Q ss_pred             h
Q 042784          244 G  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus        78 ~   78 (234)
T PRK07577         78 I   78 (234)
T ss_pred             C
Confidence            3

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.019  Score=49.09  Aligned_cols=77  Identities=16%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      ..++||+|++|.+|...+..+... .+|++++++.++.+.+.+.+...+++  |..+..++.+.+.+.  +++|.+|.+.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~vi~~a   79 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQL--GRLDVLVHNA   79 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhc--CCCCEEEECC
Confidence            358999999999999988766666 99999998887766555333222222  333323333333322  2699999988


Q ss_pred             ch
Q 042784          243 GG  244 (356)
Q Consensus       243 g~  244 (356)
                      |.
T Consensus        80 g~   81 (227)
T PRK08219         80 GV   81 (227)
T ss_pred             Cc
Confidence            73

>PLN00015 protochlorophyllide reductase

Probab=96.62  E-value=0.014  Score=52.80  Aligned_cols=75  Identities=16%  Similarity=0.188  Sum_probs=52.3

Q ss_pred             EEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCC--c----eeecCChhhHHHHHHHHC--CCCceEEE
Q 042784          169 FVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYD--D----AFNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       169 lV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~--~----v~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      +|+|+++++|.++++.+...| ++|+.+++++++.+.+.++++..  .    ..|..+..++.+.+.++.  .+++|++|
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI   80 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV   80 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            589999999999888888889 89999998888776555455321  1    235555344444444332  24699999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      .+.|
T Consensus        81 nnAG   84 (308)
T PLN00015         81 CNAA   84 (308)
T ss_pred             ECCC
Confidence            9886

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.0071  Score=53.11  Aligned_cols=76  Identities=20%  Similarity=0.293  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .|.++||+|++|++|...++.+...|++|++++++.++.  ..  -... ...|..+..++.+.+.++.  -+++|++++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   83 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--LP--EGVEFVAADLTTAEGCAAVARAVLERLGGVDILVH   83 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--cC--CceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            478999999999999999998888999999999775431  11  0111 1224444333333333221  246999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        84 ~ag   86 (260)
T PRK06523         84 VLG   86 (260)
T ss_pred             CCc
Confidence            887

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.62  E-value=0.011  Score=54.41  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC--C---ceeecCChhhHHHHHHHHCCCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY--D---DAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~--~---~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      .|.+|||+||+|.+|..+++.+...|.+|+++++++.........++.  .   ...|..+..++.+.+.+   .++|+|
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~d~v   79 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAE---FKPEIV   79 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhh---cCCCEE
Confidence            468999999999999999999999999999988766543322112221  1   11233332334343332   258999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      |.+.+
T Consensus        80 ih~A~   84 (349)
T TIGR02622        80 FHLAA   84 (349)
T ss_pred             EECCc
Confidence            99887

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.62  E-value=0.02  Score=50.78  Aligned_cols=107  Identities=14%  Similarity=0.120  Sum_probs=67.6

Q ss_pred             hhHHHHHHHhC--CCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCce-eecCChhhHHH
Q 042784          150 FAAWVGIEVLG--QPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDA-FNYNSEMSFDA  225 (356)
Q Consensus       150 ~ta~~~l~~~~--~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v-~~~~~~~~~~~  225 (356)
                      .--+.+|.+..  ...+|++++|.|+ ||.+.+++.-++..|+ +|+++.|+.+|.+.+.+.++.... +....      
T Consensus       109 ~G~~~~L~~~~~~~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~------  181 (283)
T COG0169         109 IGFLRALKEFGLPVDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAA------  181 (283)
T ss_pred             HHHHHHHHhcCCCcccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccc------
Confidence            33344554322  2345899999997 9999999999999997 899999999998888766664321 00000      


Q ss_pred             HHHHHCCC-CceEEEECCchhh-------HHHHHHhcccCCEEEEEec
Q 042784          226 ALTKYFPN-GIDVYLDNVGGKM-------LEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       226 ~i~~~~~~-~~d~vld~~g~~~-------~~~~~~~l~~~G~~v~~g~  265 (356)
                       ...+... .+|++|+|+.-..       .-. ..++.+.-.+..+-.
T Consensus       182 -~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~-~~~l~~~~~v~D~vY  227 (283)
T COG0169         182 -LADLEGLEEADLLINATPVGMAGPEGDSPVP-AELLPKGAIVYDVVY  227 (283)
T ss_pred             -ccccccccccCEEEECCCCCCCCCCCCCCCc-HHhcCcCCEEEEecc
Confidence             0001111 4899999986421       111 455666666655544

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.62  E-value=0.054  Score=45.12  Aligned_cols=97  Identities=12%  Similarity=0.127  Sum_probs=60.7

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHC-C-CEEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHC-CC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-G-CKVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYF-PN  233 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G-~~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~-~~  233 (356)
                      ...+++|++||..|+ |.-++ +..+++.. + .+|++++.++..    . ..+.. ++  |..+ ....+.+.+.. ++
T Consensus        27 ~~~i~~g~~VLDiG~-GtG~~-~~~l~~~~~~~~~v~~vDis~~~----~-~~~i~-~~~~d~~~-~~~~~~l~~~~~~~   97 (188)
T TIGR00438        27 FKLIKPGDTVLDLGA-APGGW-SQVAVEQVGGKGRVIAVDLQPMK----P-IENVD-FIRGDFTD-EEVLNKIRERVGDD   97 (188)
T ss_pred             hcccCCCCEEEEecC-CCCHH-HHHHHHHhCCCceEEEEeccccc----c-CCCce-EEEeeCCC-hhHHHHHHHHhCCC
Confidence            456789999999995 54444 44455444 3 389999988754    1 22332 22  3332 23334455444 45


Q ss_pred             CceEEEEC-----Cc-------------hhhHHHHHHhcccCCEEEEEe
Q 042784          234 GIDVYLDN-----VG-------------GKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       234 ~~d~vld~-----~g-------------~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ++|+|+..     .|             ...+..+.++|+++|+++...
T Consensus        98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            79999952     22             135677889999999998754

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.62  E-value=0.026  Score=50.39  Aligned_cols=94  Identities=16%  Similarity=0.034  Sum_probs=60.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC----CceeecCChhhHHHHHHHHCCCCceE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGY----DDAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~----~~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      ..+.+|+|.|+ |++|.+++..+...|+ +|++++++.++.+.+.+.++.    ..+...   .++.+.+     ..+|+
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~---~~~~~~~-----~~aDi  195 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAG---SDLAAAL-----AAADG  195 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEec---cchHhhh-----CCCCE
Confidence            35689999997 9999999999999999 899999998888777645432    112211   1222222     34899


Q ss_pred             EEECCchh-----hHHHHHHhcccCCEEEEEec
Q 042784          238 YLDNVGGK-----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       238 vld~~g~~-----~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ||+|+...     ........+++...++.+-.
T Consensus       196 VInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY  228 (284)
T PRK12549        196 LVHATPTGMAKHPGLPLPAELLRPGLWVADIVY  228 (284)
T ss_pred             EEECCcCCCCCCCCCCCCHHHcCCCcEEEEeee
Confidence            99996421     10111234566555555543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.61  E-value=0.015  Score=52.98  Aligned_cols=95  Identities=13%  Similarity=0.133  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHH-HHCCC-EEEEEeCChHHHHHHHHHh----CCCceeecCChhhHHHHHHHHCCCCce
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLA-KLKGC-KVVGSTGSDDNVKLLKEEF----GYDDAFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la-~~~G~-~V~~~~~s~~~~~~~~~~~----g~~~v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      +...+++|.|+ |+.|.+.+..+ ...++ +|.+..+++++.+.+.+++    +.. +..+.   ++.+.++     .+|
T Consensus       125 ~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~---~~~~~~~-----~aD  194 (325)
T PRK08618        125 EDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVN---SADEAIE-----EAD  194 (325)
T ss_pred             CCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeC---CHHHHHh-----cCC
Confidence            45678999996 99998776544 46687 8889999988877665443    332 22332   3444442     489


Q ss_pred             EEEECCchhhHHHHHHhcccCCEEEEEecccc
Q 042784          237 VYLDNVGGKMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       237 ~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +|+.|++....... +.++++-++..+|....
T Consensus       195 iVi~aT~s~~p~i~-~~l~~G~hV~~iGs~~p  225 (325)
T PRK08618        195 IIVTVTNAKTPVFS-EKLKKGVHINAVGSFMP  225 (325)
T ss_pred             EEEEccCCCCcchH-HhcCCCcEEEecCCCCc
Confidence            99999987633334 88999999999988654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.61  E-value=0.014  Score=50.72  Aligned_cols=80  Identities=29%  Similarity=0.397  Sum_probs=52.0

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHHHh---CCCc-e--eecCChhhHHHHHHHHC--CCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKEEF---GYDD-A--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      +.++||+|++|++|...+..+...|++|+++ .++.++.+.+.+.+   +... +  .|..+..++.+.+.+..  -+++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI   84 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999988887889999888 87776655443232   2211 1  24444333333333221  1369


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |++|.+.|.
T Consensus        85 d~vi~~ag~   93 (247)
T PRK05565         85 DILVNNAGI   93 (247)
T ss_pred             CEEEECCCc
Confidence            999998863

>PRK05599 hypothetical protein; Provisional

Probab=96.60  E-value=0.013  Score=51.13  Aligned_cols=77  Identities=12%  Similarity=0.136  Sum_probs=50.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC--ce--eecCChhhHHHHHHHHC--CCCceE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD--DA--FNYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~--~v--~~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      +++|+|+++++|.+.+..+. .|.+|+.+++++++.+.+.+++   |..  ..  .|..+..++.+.+.++.  -+++|+
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~   80 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL   80 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence            68999999999999877665 4999999999888776654333   322  12  24444333333333322  246999


Q ss_pred             EEECCch
Q 042784          238 YLDNVGG  244 (356)
Q Consensus       238 vld~~g~  244 (356)
                      ++.+.|.
T Consensus        81 lv~nag~   87 (246)
T PRK05599         81 AVVAFGI   87 (246)
T ss_pred             EEEecCc
Confidence            9988773

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.59  E-value=0.044  Score=50.97  Aligned_cols=94  Identities=19%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      -.+.++||.|+ |-+|..++..+...|. +|++..++.++.+.+.+++|+. +..+   .++.+.+.     .+|+||-+
T Consensus       176 L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l---~el~~~l~-----~~DvViss  245 (414)
T COG0373         176 LKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVAL---EELLEALA-----EADVVISS  245 (414)
T ss_pred             cccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecH---HHHHHhhh-----hCCEEEEe
Confidence            35889999998 9999999999999997 8999999999988777799954 4433   33444443     38999999


Q ss_pred             Cchh----hHHHHHHhcccCC--EEEEEecc
Q 042784          242 VGGK----MLEAVLNHVNVHA--RIILCGMI  266 (356)
Q Consensus       242 ~g~~----~~~~~~~~l~~~G--~~v~~g~~  266 (356)
                      +|.+    ......+.++..-  -++.++.+
T Consensus       246 Tsa~~~ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         246 TSAPHPIITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             cCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence            9875    2233444444433  34555554

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=96.59  E-value=0.51  Score=42.29  Aligned_cols=56  Identities=21%  Similarity=0.372  Sum_probs=48.0

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC---ChHHHHHHHHHhCCCcee
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG---SDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~---s~~~~~~~~~~~g~~~v~  215 (356)
                      .+.+.||.++||-.-+|.+|.....++...|.+++++-.   +.+|...++ .||+..+.
T Consensus        97 ~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~-a~Gaeii~  155 (362)
T KOG1252|consen   97 KGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLR-ALGAEIIL  155 (362)
T ss_pred             cCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHH-HcCCEEEe
Confidence            477899999999999999999999999999999888864   457778888 89987443

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.58  E-value=0.013  Score=51.01  Aligned_cols=81  Identities=31%  Similarity=0.355  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHH-HHHHH--HhCCCce---eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNV-KLLKE--EFGYDDA---FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~-~~~~~--~~g~~~v---~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+|++|++|..+++.+...|++|++... +..+. +.+.+  ..+....   .|..+..++.+.+.+..  .++
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            3678999999999999999999999998877543 23222 22220  2343322   34444334444333322  247


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|+++.+.|.
T Consensus        82 id~li~~ag~   91 (246)
T PRK12938         82 IDVLVNNAGI   91 (246)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.57  E-value=0.026  Score=50.52  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=35.8

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh---HHHHHHHHHh
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD---DNVKLLKEEF  209 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~---~~~~~~~~~~  209 (356)
                      ..+.+++|+|+ ||+|.+++..+...|+ +|+++.++.   ++.+.+.+++
T Consensus       124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l  173 (289)
T PRK12548        124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKI  173 (289)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHH
Confidence            35789999998 9999999888888999 599999885   4544443344

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.57  E-value=0.036  Score=48.00  Aligned_cols=104  Identities=15%  Similarity=0.082  Sum_probs=69.7

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHC-
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYF-  231 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~-  231 (356)
                      ...+..++++||=.|  .+.|..++.+++..+  .+|+.++.+++..+.+++   +.|....+.... .+..+.+.++. 
T Consensus        62 ~l~~~~~~~~vLEiG--t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~-gda~~~L~~l~~  138 (234)
T PLN02781         62 MLVKIMNAKNTLEIG--VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ-SDALSALDQLLN  138 (234)
T ss_pred             HHHHHhCCCEEEEec--CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHHh
Confidence            345567788999998  567777777787763  499999999988777764   335433233222 34444454442 


Q ss_pred             ---CCCceEEEECCch----hhHHHHHHhcccCCEEEEEe
Q 042784          232 ---PNGIDVYLDNVGG----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       232 ---~~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g  264 (356)
                         .+.||+||--...    ..+..+++.++++|.++.-.
T Consensus       139 ~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        139 NDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence               2479999854432    36788899999999877543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.56  E-value=0.015  Score=49.59  Aligned_cols=100  Identities=18%  Similarity=0.184  Sum_probs=66.3

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      +..+++++++||-.|  .|.|..+..+++..+  .+|++++.+++-.+.+++.   +|...+ .... .+..+..  ...
T Consensus        70 ~~l~~~~g~~VLdIG--~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v-~~~~-gd~~~~~--~~~  143 (212)
T PRK13942         70 ELLDLKEGMKVLEIG--TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNV-EVIV-GDGTLGY--EEN  143 (212)
T ss_pred             HHcCCCCcCEEEEEC--CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEE-CCcccCC--CcC
Confidence            456789999999999  567888888888876  4999999998887777643   333211 1111 1111100  012


Q ss_pred             CCceEEEECCch-hhHHHHHHhcccCCEEEEE
Q 042784          233 NGIDVYLDNVGG-KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       233 ~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~  263 (356)
                      +.||+|+-.... ......++.|+++|+++..
T Consensus       144 ~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        144 APYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence            469999765443 4556778899999998764

>PRK00811 spermidine synthase; Provisional

Probab=96.56  E-value=0.025  Score=50.50  Aligned_cols=97  Identities=12%  Similarity=0.074  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC-------CceeecCChhhHHHHHHHHCCCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGY-------DDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~-------~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ...++||+.|  +|.|..+..+++..+. +|.+++.+++-.+.+++-+..       +.-+.... .+..+.+.. ..+.
T Consensus        75 ~~p~~VL~iG--~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~-~Da~~~l~~-~~~~  150 (283)
T PRK00811         75 PNPKRVLIIG--GGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI-GDGIKFVAE-TENS  150 (283)
T ss_pred             CCCCEEEEEe--cCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE-CchHHHHhh-CCCc
Confidence            4568999999  4557778888887676 999999999888888754421       11111111 333333433 3457


Q ss_pred             ceEEEECCc-----------hhhHHHHHHhcccCCEEEEE
Q 042784          235 IDVYLDNVG-----------GKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       235 ~d~vld~~g-----------~~~~~~~~~~l~~~G~~v~~  263 (356)
                      +|+|+--..           .+.+..+.+.|+++|.++.-
T Consensus       151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            999985331           12467788999999998864

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.55  E-value=0.033  Score=46.37  Aligned_cols=96  Identities=18%  Similarity=0.217  Sum_probs=63.3

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCce
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      .++++.+||-.|+  |.|..++.+++.. +++|++++.+++..+.+++   +.+... +.... .+..+ +..  .+.+|
T Consensus        42 ~l~~g~~VLDiGc--GtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~-~d~~~-~~~--~~~fD  114 (187)
T PRK00107         42 YLPGGERVLDVGS--GAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVH-GRAEE-FGQ--EEKFD  114 (187)
T ss_pred             hcCCCCeEEEEcC--CCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEe-ccHhh-CCC--CCCcc
Confidence            3566899999984  4566677777655 5699999999887766653   344433 22211 22222 211  34799


Q ss_pred             EEEECCch---hhHHHHHHhcccCCEEEEE
Q 042784          237 VYLDNVGG---KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       237 ~vld~~g~---~~~~~~~~~l~~~G~~v~~  263 (356)
                      +|+.....   ..+..+.+.|+++|+++.+
T Consensus       115 lV~~~~~~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        115 VVTSRAVASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             EEEEccccCHHHHHHHHHHhcCCCeEEEEE
Confidence            99975432   3677889999999999876

>PLN02366 spermidine synthase

Probab=96.55  E-value=0.026  Score=50.81  Aligned_cols=99  Identities=13%  Similarity=0.052  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC------CceeecCChhhHHHHHHHHCCCC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGY------DDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~------~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ....++||+.|+  |-|..+..+++..+. +|.+++.+++-.+.+++-|..      +.-+.... .|..+.+++..++.
T Consensus        89 ~~~pkrVLiIGg--G~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~-~Da~~~l~~~~~~~  165 (308)
T PLN02366         89 IPNPKKVLVVGG--GDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI-GDGVEFLKNAPEGT  165 (308)
T ss_pred             CCCCCeEEEEcC--CccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEE-ChHHHHHhhccCCC
Confidence            355789999995  347777888888775 899999888777777743432      10111111 33434444433457


Q ss_pred             ceEEEECCch-----------hhHHHHHHhcccCCEEEEE
Q 042784          235 IDVYLDNVGG-----------KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       235 ~d~vld~~g~-----------~~~~~~~~~l~~~G~~v~~  263 (356)
                      +|+||--...           +.+..+.++|+++|.++.-
T Consensus       166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            9999853221           2577888999999998754

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.55  E-value=0.033  Score=47.43  Aligned_cols=94  Identities=19%  Similarity=0.243  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      -+|.+||=.|+.||  +++ +-+...|++|++++.+++..+.++ .....  --+||..  ...+.+... ++.||+|++
T Consensus        58 l~g~~vLDvGCGgG--~Ls-e~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~--~~~edl~~~-~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCGGG--ILS-EPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQ--ATVEDLASA-GGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCCcc--Hhh-HHHHHCCCeeEEecCChHHHHHHH-Hhhhhccccccchh--hhHHHHHhc-CCCccEEEE
Confidence            47889999997554  433 444556899999999999999887 22221  1255653  333333322 257999986


Q ss_pred             C-----Cch--hhHHHHHHhcccCCEEEEE
Q 042784          241 N-----VGG--KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       241 ~-----~g~--~~~~~~~~~l~~~G~~v~~  263 (356)
                      -     +..  ..+..+.++++|+|+++..
T Consensus       131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         131 MEVLEHVPDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             hhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence            3     233  2677899999999998753

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.53  E-value=0.025  Score=48.97  Aligned_cols=81  Identities=23%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-HHHHHHH---hCCC-cee--ecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-VKLLKEE---FGYD-DAF--NYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-~~~~~~~---~g~~-~v~--~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+|++|++|...+..+...|++|+++.++..+ .+...+.   .+.. ..+  |..+..++.+.+.++.  -++
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999998899998777665442 2222212   2322 122  4444344444344332  136


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|.++.+.|.
T Consensus        84 id~vi~~ag~   93 (248)
T PRK05557         84 VDILVNNAGI   93 (248)
T ss_pred             CCEEEECCCc
Confidence            8999998873

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.015  Score=51.52  Aligned_cols=81  Identities=23%  Similarity=0.358  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-------HHHHHH---HhCCCc---eeecCChhhHHHHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-------VKLLKE---EFGYDD---AFNYNSEMSFDAALTKY  230 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-------~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~  230 (356)
                      .+.+++|+||+|++|..+++.+...|++|++++++.+.       .+.+.+   ..+...   ..|..+...+.+.+.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~   84 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA   84 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            46799999999999999999888899999999876542       111111   233321   13444434444333332


Q ss_pred             C--CCCceEEEECCch
Q 042784          231 F--PNGIDVYLDNVGG  244 (356)
Q Consensus       231 ~--~~~~d~vld~~g~  244 (356)
                      .  -+.+|++|.+.|.
T Consensus        85 ~~~~g~id~li~~ag~  100 (273)
T PRK08278         85 VERFGGIDICVNNASA  100 (273)
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1  1369999998873

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=96.52  E-value=0.016  Score=50.90  Aligned_cols=105  Identities=10%  Similarity=0.093  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCC------hHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHC--
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGS------DDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYF--  231 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s------~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~--  231 (356)
                      .|++++|+|++  +++|.++++.+...|++|+.+.++      ++..+.++++.+..  ...|..+..+..+.+.++.  
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            47899999985  799999998888899999877533      22233333222211  1234444344444333332  


Q ss_pred             CCCceEEEECCchh---------------h---------------HHHHHHhcccCCEEEEEecccc
Q 042784          232 PNGIDVYLDNVGGK---------------M---------------LEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       232 ~~~~d~vld~~g~~---------------~---------------~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      .+.+|+++.+.|..               .               .+.++..++.+|+++.++...+
T Consensus        85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~  151 (258)
T PRK07370         85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGG  151 (258)
T ss_pred             cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccc
Confidence            24699999988721               0               1334556667799988876443

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.50  E-value=0.026  Score=50.33  Aligned_cols=75  Identities=15%  Similarity=0.022  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .+.+++|.|+ |+.+.+++..+...|+ +|+++.|+.++.+.+.+.++... +....   .+ +.+.+.. ..+|+||+|
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~---~~-~~~~~~~-~~~DiVIna  197 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE---GD-SGGLAIE-KAAEVLVST  197 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc---ch-hhhhhcc-cCCCEEEEC
Confidence            5789999997 9999999999999998 89999999988877765665321 11111   01 1111111 358999999


Q ss_pred             Cch
Q 042784          242 VGG  244 (356)
Q Consensus       242 ~g~  244 (356)
                      +..
T Consensus       198 Tp~  200 (282)
T TIGR01809       198 VPA  200 (282)
T ss_pred             CCC
Confidence            875

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.018  Score=49.99  Aligned_cols=77  Identities=13%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCC-ce--eecCChhhHHHHHHHHCCCCceEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYD-DA--FNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~-~v--~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      .+++|+||+|++|...++.+...|++|+++++++++.+.+.+.+    +.. .+  .|..+..++.+.+.+.. ..+|++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~-~~~d~v   80 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLP-ALPDIV   80 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHh-hcCCEE
Confidence            57999999999999999888888999999998887665443222    111 11  23333233444343332 247999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        81 v~~ag   85 (243)
T PRK07102         81 LIAVG   85 (243)
T ss_pred             EECCc
Confidence            98776

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.48  E-value=0.025  Score=49.73  Aligned_cols=81  Identities=20%  Similarity=0.185  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHH---HhCCC---ceeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLKE---EFGYD---DAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~~---~~g~~---~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+||+|++|..+++.+...|++|+.+.++. +..+.+.+   ..+..   ...|..+..++.+.+.++.  .++
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   85 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGT   85 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999888877643 33332221   22332   1224444333333333321  246


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|+++.+.|.
T Consensus        86 id~lv~~ag~   95 (261)
T PRK08936         86 LDVMINNAGI   95 (261)
T ss_pred             CCEEEECCCC
Confidence            9999998873

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.47  E-value=0.03  Score=47.44  Aligned_cols=101  Identities=15%  Similarity=0.149  Sum_probs=65.8

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      +...++++++||=.|  .|.|..+..+++..+  .+|++++.+++-.+.+++.   ++....+.... .+..+.+..  .
T Consensus        66 ~~l~~~~~~~VLDiG--~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~-~d~~~~~~~--~  140 (205)
T PRK13944         66 ELIEPRPGMKILEVG--TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH-GDGKRGLEK--H  140 (205)
T ss_pred             HhcCCCCCCEEEEEC--cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-CCcccCCcc--C
Confidence            456678999999998  466888888888774  4999999998877666543   34321111110 122111111  2


Q ss_pred             CCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          233 NGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       233 ~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      +.||+|+-+.... ......+.|+++|+++..
T Consensus       141 ~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        141 APFDAIIVTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             CCccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence            4699998766543 456778899999998753

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.47  E-value=0.016  Score=51.96  Aligned_cols=74  Identities=26%  Similarity=0.416  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH---HHHHHHhCC-Cc---ee--ecCChhhHHHHHHHHCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV---KLLKEEFGY-DD---AF--NYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~---~~~~~~~g~-~~---v~--~~~~~~~~~~~i~~~~~~~  234 (356)
                      .+.+|+|+||+|=+|.+.+..+...|.+|.+++|++++.   +.++ +|.. .+   ++  |..+...+.+.+     .|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~-~l~~a~~~l~l~~aDL~d~~sf~~ai-----~g   78 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLR-KLEGAKERLKLFKADLLDEGSFDKAI-----DG   78 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHH-hcccCcccceEEeccccccchHHHHH-----hC
Confidence            578999999999999999999999999999999988763   3455 5442 21   11  222224455555     46


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|.||.++.
T Consensus        79 cdgVfH~As   87 (327)
T KOG1502|consen   79 CDGVFHTAS   87 (327)
T ss_pred             CCEEEEeCc
Confidence            999998765

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.47  E-value=0.034  Score=49.22  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=54.9

Q ss_pred             hHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHH
Q 042784          151 AAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       151 ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~  229 (356)
                      -...++.+ .....+.+++|.|+ ||.+.+++..++..|+ +|+++.+++++.+.+.+.++..    +      ...+  
T Consensus       109 Gf~~~L~~-~~~~~~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----~------~~~~--  174 (272)
T PRK12550        109 AIAKLLAS-YQVPPDLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----W------RPDL--  174 (272)
T ss_pred             HHHHHHHh-cCCCCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----c------hhhc--
Confidence            33445543 23445679999997 9999999999999998 7999999998888776555421    1      0111  


Q ss_pred             HCCCCceEEEECCc
Q 042784          230 YFPNGIDVYLDNVG  243 (356)
Q Consensus       230 ~~~~~~d~vld~~g  243 (356)
                       ....+|+|++|+.
T Consensus       175 -~~~~~dlvINaTp  187 (272)
T PRK12550        175 -GGIEADILVNVTP  187 (272)
T ss_pred             -ccccCCEEEECCc
Confidence             1134899999975

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.47  E-value=0.031  Score=44.85  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      ..+.+++|.|+ |++|...++.+...| .+|++.+++.++.+.+.++++... ..+..   +..+.+     .++|+|+.
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~Dvvi~   87 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYL---DLEELL-----AEADLIIN   87 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeec---chhhcc-----ccCCEEEe
Confidence            45789999997 999999998888886 589999988888776654666431 11121   222222     45999999


Q ss_pred             CCchhhH-----HHHHHhcccCCEEEEEecc
Q 042784          241 NVGGKML-----EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       241 ~~g~~~~-----~~~~~~l~~~G~~v~~g~~  266 (356)
                      |++....     ......++++..++.++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~  118 (155)
T cd01065          88 TTPVGMKPGDELPLPPSLLKPGGVVYDVVYN  118 (155)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence            9886432     1122446777777777553

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.46  E-value=0.023  Score=47.89  Aligned_cols=92  Identities=12%  Similarity=0.041  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .|.+|||.|+ |.+|...+..+...|++|+++.+... ....+. .-+.- .+...   .+.+.  .+  .++|+||-|+
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~-~~~~i-~~~~~---~~~~~--~l--~~adlViaaT   78 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTENLVKLV-EEGKI-RWKQK---EFEPS--DI--VDAFLVIAAT   78 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHH-hCCCE-EEEec---CCChh--hc--CCceEEEEcC
Confidence            4789999998 99999999888889999988864321 222222 11211 11111   11110  01  3689999999


Q ss_pred             chhhHHHHHHhcccCCEEEEEec
Q 042784          243 GGKMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       243 g~~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +++.++..+......+.++.+.+
T Consensus        79 ~d~elN~~i~~~a~~~~lvn~~d  101 (202)
T PRK06718         79 NDPRVNEQVKEDLPENALFNVIT  101 (202)
T ss_pred             CCHHHHHHHHHHHHhCCcEEECC
Confidence            99866665554444466665544

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.46  E-value=0.014  Score=56.51  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=53.9

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +.+|++|+|.|. |..|++++++++..|++|++.+..+.+.+.++ ++|.. ++...   ...+.+     ..+|+|+.+
T Consensus         9 ~~~~~~v~V~G~-G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~-~~g~~-~~~~~---~~~~~l-----~~~D~VV~S   77 (488)
T PRK03369          9 LLPGAPVLVAGA-GVTGRAVLAALTRFGARPTVCDDDPDALRPHA-ERGVA-TVSTS---DAVQQI-----ADYALVVTS   77 (488)
T ss_pred             ccCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-hCCCE-EEcCc---chHhHh-----hcCCEEEEC
Confidence            567899999997 99999999999999999999997766666666 66764 33221   112223     247999998


Q ss_pred             Cchh
Q 042784          242 VGGK  245 (356)
Q Consensus       242 ~g~~  245 (356)
                      -|-+
T Consensus        78 pGi~   81 (488)
T PRK03369         78 PGFR   81 (488)
T ss_pred             CCCC
Confidence            8853

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.019  Score=57.71  Aligned_cols=79  Identities=18%  Similarity=0.309  Sum_probs=55.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      +.+++|+||+|++|..++..+...|++|+++++++++.+.+.+++   +...   ..|..+..++.+.+.++.  -+++|
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  450 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHVD  450 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            678999999999999999888888999999999888766554332   3221   124444344444444332  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++.+.|
T Consensus       451 ~li~~Ag  457 (657)
T PRK07201        451 YLVNNAG  457 (657)
T ss_pred             EEEECCC
Confidence            9999987

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.45  E-value=0.043  Score=46.39  Aligned_cols=92  Identities=17%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .|.+|||.|+ |.+|..-++.+...|++|++++.... ....+. +.|.- .+...+   +...  .+  .++|+|+-++
T Consensus         8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~-~~~~i-~~~~~~---~~~~--dl--~~~~lVi~at   77 (205)
T TIGR01470         8 EGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELESELTLLA-EQGGI-TWLARC---FDAD--IL--EGAFLVIAAT   77 (205)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-HcCCE-EEEeCC---CCHH--Hh--CCcEEEEECC
Confidence            3789999998 99999999999999999998875432 333333 33421 121111   1111  11  4699999999


Q ss_pred             chh-hHHHHHHhcccCCEEEEEec
Q 042784          243 GGK-MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       243 g~~-~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +.+ .........+..|..+.+..
T Consensus        78 ~d~~ln~~i~~~a~~~~ilvn~~d  101 (205)
T TIGR01470        78 DDEELNRRVAHAARARGVPVNVVD  101 (205)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEECC
Confidence            987 44456666677787776544

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.44  E-value=0.074  Score=42.90  Aligned_cols=88  Identities=11%  Similarity=0.143  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|+|.|| |.+|..-++.+...|++|++++  ++..+.++ +++.. .++..   .+.+.  .+  .++|+|+-+++
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs--p~~~~~l~-~l~~i-~~~~~---~~~~~--dl--~~a~lViaaT~   79 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS--PEICKEMK-ELPYI-TWKQK---TFSND--DI--KDAHLIYAATN   79 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc--CccCHHHH-hccCc-EEEec---ccChh--cC--CCceEEEECCC
Confidence            4789999998 9999998888888999998874  44444555 44422 12211   11111  01  36899999999


Q ss_pred             hhhHHHHHHhcccCCEEEEE
Q 042784          244 GKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       244 ~~~~~~~~~~l~~~G~~v~~  263 (356)
                      ++..+......+..+.++.+
T Consensus        80 d~e~N~~i~~~a~~~~~vn~   99 (157)
T PRK06719         80 QHAVNMMVKQAAHDFQWVNV   99 (157)
T ss_pred             CHHHHHHHHHHHHHCCcEEE
Confidence            87666555544433444443

>PRK05855 short chain dehydrogenase; Validated

Probab=96.44  E-value=0.017  Score=57.10  Aligned_cols=81  Identities=21%  Similarity=0.177  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|...++.+...|++|+.++++.++.+.+.+.   .|.. .  ..|..+.....+.+.++.  .+.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  393 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP  393 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            467899999999999999988888999999999988776654422   2332 1  134444333433333332  2469


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+++.+.|.
T Consensus       394 d~lv~~Ag~  402 (582)
T PRK05855        394 DIVVNNAGI  402 (582)
T ss_pred             cEEEECCcc
Confidence            999999874

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=96.43  E-value=0.11  Score=40.09  Aligned_cols=93  Identities=14%  Similarity=0.178  Sum_probs=57.6

Q ss_pred             EEEEcCCChHHHHHHHHHHHCC--CEEEEEeCC--hHHHHHHHHHhCCCceeecCChhhHHHHHH---------------
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGS--DDNVKLLKEEFGYDDAFNYNSEMSFDAALT---------------  228 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s--~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~---------------  228 (356)
                      |.|.|++|++|..++.+.+...  ++|++....  -+.+....++|....+.-.+.  ...+.++               
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~--~~~~~l~~~~~~~~~~~~v~~G   78 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADE--EAYEELKKALPSKGPGIEVLSG   78 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSH--HHHHHHHHHHHHTTSSSEEEES
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH--HHHHHHHHHhhhcCCCCEEEeC
Confidence            6799999999999999999987  588877632  233332223787766555442  2222221               


Q ss_pred             -----HHC-CCCceEEEECC-chhhHHHHHHhcccCCEEEE
Q 042784          229 -----KYF-PNGIDVYLDNV-GGKMLEAVLNHVNVHARIIL  262 (356)
Q Consensus       229 -----~~~-~~~~d~vld~~-g~~~~~~~~~~l~~~G~~v~  262 (356)
                           ++. ...+|+|+.++ |...+...+..++.+-++.+
T Consensus        79 ~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL  119 (129)
T PF02670_consen   79 PEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL  119 (129)
T ss_dssp             HHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred             hHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence                 221 14678888875 55677888888887766654

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.43  E-value=0.026  Score=48.71  Aligned_cols=70  Identities=21%  Similarity=0.289  Sum_probs=50.6

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHHhCCCce-eecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD--NVKLLKEEFGYDDA-FNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~--~~~~~~~~~g~~~v-~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      |+|+||+|.+|...++.+...+.+|.+.+++..  ....++ ..|+..+ .|+.+.+.+.+.+     .|+|.||.+++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~-~~g~~vv~~d~~~~~~l~~al-----~g~d~v~~~~~   73 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQ-ALGAEVVEADYDDPESLVAAL-----KGVDAVFSVTP   73 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHH-HTTTEEEES-TT-HHHHHHHH-----TTCSEEEEESS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhh-cccceEeecccCCHHHHHHHH-----cCCceEEeecC
Confidence            799999999999999999888889999998753  345566 6787532 2344333343333     46999999888

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.42  E-value=0.06  Score=49.59  Aligned_cols=96  Identities=16%  Similarity=0.160  Sum_probs=65.8

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC--CCEEEEEe--CChHHHHHHHHHhCCCceeecCChhhHHHHHHH------------
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK--GCKVVGST--GSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTK------------  229 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~--~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~------------  229 (356)
                      ++|.|.|++|++|..++...+..  .++|++++  .+.++.....++|+...+...+.  ...+.+++            
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~--~~~~~l~~~l~~~~~~v~~G   79 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE--EAAKELKEALAAAGIEVLAG   79 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH--HHHHHHHHhhccCCceEEEC
Confidence            57999999999999999988765  56888876  34445555555888875554432  22222222            


Q ss_pred             ------HC-CCCceEEEECCch-hhHHHHHHhcccCCEEEEE
Q 042784          230 ------YF-PNGIDVYLDNVGG-KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       230 ------~~-~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~  263 (356)
                            +. ...+|+|+.++++ ..+...+.+++.+.++.+.
T Consensus        80 ~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA  121 (385)
T PRK05447         80 EEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA  121 (385)
T ss_pred             hhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence                  11 1358999999876 4777888899888877763

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.41  E-value=0.057  Score=48.10  Aligned_cols=46  Identities=20%  Similarity=0.176  Sum_probs=39.0

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEF  209 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~  209 (356)
                      ..+.+++|.|+ ||.+.+++..+...|+ +|+++.++.+|.+.+.+.+
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~  171 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence            34789999997 9999999988888998 8999999988877776454

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.40  E-value=0.033  Score=49.28  Aligned_cols=97  Identities=20%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+....+..+....---.|.+|+|.|.++-+|.-...++...|++|+.....                    . .++
T Consensus       137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------------t-~~l  195 (285)
T PRK14189        137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------------T-RDL  195 (285)
T ss_pred             CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------------C-CCH
Confidence            3455555555555433323469999999998888999999999999999874311                    1 334


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.+++     +|+|+-++|.+.+-. -+.++++..++.+|...
T Consensus       196 ~~~~~~-----ADIVV~avG~~~~i~-~~~ik~gavVIDVGin~  233 (285)
T PRK14189        196 AAHTRQ-----ADIVVAAVGKRNVLT-ADMVKPGATVIDVGMNR  233 (285)
T ss_pred             HHHhhh-----CCEEEEcCCCcCccC-HHHcCCCCEEEEccccc
Confidence            444443     899999999874422 27899999999998754

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.40  E-value=0.034  Score=50.27  Aligned_cols=89  Identities=13%  Similarity=0.061  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++.+|++|++.+++.++..      +...+...   .++.+.+.     ..|+|+.+..
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~~~~------~~~~~~~~---~~l~e~l~-----~aDvvv~~lP  199 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRKSWP------GVQSFAGR---EELSAFLS-----QTRVLINLLP  199 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCCC------Cceeeccc---ccHHHHHh-----cCCEEEECCC
Confidence            5789999996 99999999999999999999886543321      11111111   34444443     3799999887


Q ss_pred             hh-----h-HHHHHHhcccCCEEEEEeccc
Q 042784          244 GK-----M-LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~~-----~-~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ..     . -...++.|+++..+|.+|...
T Consensus       200 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~  229 (312)
T PRK15469        200 NTPETVGIINQQLLEQLPDGAYLLNLARGV  229 (312)
T ss_pred             CCHHHHHHhHHHHHhcCCCCcEEEECCCcc
Confidence            42     2 245788899999998887643

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.40  E-value=0.0091  Score=52.66  Aligned_cols=76  Identities=17%  Similarity=0.255  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .+.+++|+|++|++|.++++.+...|++|+.+++++++.+.    .... ...|..+..++.+.+.++.  -+.+|+++.
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~   83 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQH----ENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVN   83 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccccc----CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            36899999999999999999999999999998876554321    1111 1234444344444444332  246999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        84 ~Ag   86 (266)
T PRK06171         84 NAG   86 (266)
T ss_pred             CCc
Confidence            887

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.39  E-value=0.035  Score=52.05  Aligned_cols=107  Identities=18%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHH------HHHHHh-CCC-ceeecCChhhHHHHHHHHC
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK------LLKEEF-GYD-DAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~------~~~~~~-g~~-~v~~~~~~~~~~~~i~~~~  231 (356)
                      .+-..+.+|||+||+|.+|..+++.+...|.+|++++++.++..      ...... +.. ...|..+...+.+.+.+. 
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-  133 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE-  133 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh-
Confidence            34456789999999999999999988889999999998765421      111112 222 123555434444444432 


Q ss_pred             CCCceEEEECCchh-------------hHHHHHHhcccC--CEEEEEeccc
Q 042784          232 PNGIDVYLDNVGGK-------------MLEAVLNHVNVH--ARIILCGMIS  267 (356)
Q Consensus       232 ~~~~d~vld~~g~~-------------~~~~~~~~l~~~--G~~v~~g~~~  267 (356)
                      +.++|+||+|.+..             ....+++.++..  +++|.++...
T Consensus       134 ~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~  184 (390)
T PLN02657        134 GDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAIC  184 (390)
T ss_pred             CCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeecc
Confidence            12699999988631             112334444333  4788777543

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.03  Score=50.20  Aligned_cols=80  Identities=14%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+|++|++|..++..+...|++|+.+.++.+ ..+.+.+   ..|...   ..|..+...+.+.+.++.  -++
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~  124 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR  124 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999888888999998887643 2222221   223321   123333333333333321  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus       125 iD~lI~~Ag  133 (290)
T PRK06701        125 LDILVNNAA  133 (290)
T ss_pred             CCEEEECCc
Confidence            899998876

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=96.34  E-value=0.028  Score=46.17  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=54.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC---Ccee--ecCChhhHHHHHHHHC--CCCceE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY---DDAF--NYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~---~~v~--~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      ...++|+|+++++|.+..+++...|++|.+.+...+..+.....+|.   +..|  |-++..+....+++..  -+.+++
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psv   93 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSV   93 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcE
Confidence            45678999999999999999999999999998776666555546665   2222  2233233322233221  137999


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      +++|.|
T Consensus        94 lVncAG   99 (256)
T KOG1200|consen   94 LVNCAG   99 (256)
T ss_pred             EEEcCc
Confidence            999999

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.32  E-value=0.017  Score=50.05  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHH---hCCCceeecCChhhHH-HHHHH
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFD-AALTK  229 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~-~~i~~  229 (356)
                      +....++.||++|+=-|  .|.|.++..+++..|-  +|+..+.++++.+.+++.   +|....+.... .|+. +...+
T Consensus        32 I~~~l~i~pG~~VlEaG--tGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~-~Dv~~~g~~~  108 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAG--TGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH-RDVCEEGFDE  108 (247)
T ss_dssp             HHHHTT--TT-EEEEE----TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE-S-GGCG--ST
T ss_pred             HHHHcCCCCCCEEEEec--CCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe-cceecccccc
Confidence            33468899999998877  5678888999998875  999999999998877653   45543332211 2221 11111


Q ss_pred             HCCCCceEEEECCch--hhHHHHHHhc-ccCCEEEEEec
Q 042784          230 YFPNGIDVYLDNVGG--KMLEAVLNHV-NVHARIILCGM  265 (356)
Q Consensus       230 ~~~~~~d~vld~~g~--~~~~~~~~~l-~~~G~~v~~g~  265 (356)
                      -....+|.||==...  ..+..+.+.| +++|+++.+..
T Consensus       109 ~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen  109 ELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             T-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             cccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence            012468988754444  4899999999 89999998754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.28  E-value=0.12  Score=37.73  Aligned_cols=86  Identities=20%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC---CEEEEE-eCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKG---CKVVGS-TGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G---~~V~~~-~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +|.|.|+ |.+|.+.+.-+...|   .+|+.+ .+++++.+.++++++.....     .+..+.+++     .|+||-|+
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----advvilav   69 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATA-----DDNEEAAQE-----ADVVILAV   69 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEES-----EEHHHHHHH-----TSEEEE-S
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcccccc-----CChHHhhcc-----CCEEEEEE
Confidence            5778886 999999999988888   688855 89999998887677754222     123334443     79999999


Q ss_pred             chhhHHHHHHh---cccCCEEEEE
Q 042784          243 GGKMLEAVLNH---VNVHARIILC  263 (356)
Q Consensus       243 g~~~~~~~~~~---l~~~G~~v~~  263 (356)
                      -...+...++.   ..++..++.+
T Consensus        70 ~p~~~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   70 KPQQLPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             -GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHHHHhhccCCCEEEEe
Confidence            88655554443   4555555544

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.28  E-value=0.061  Score=47.55  Aligned_cols=97  Identities=15%  Similarity=0.043  Sum_probs=68.3

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+....+..+....---.|.+|+|.|.+..+|.-...++...|++|++.....                     +++
T Consensus       136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l  194 (285)
T PRK14191        136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDL  194 (285)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHH
Confidence            35666655665565332223699999999977999999999999999987653111                     233


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.+++     +|+|+-++|.+.+-. -+.++++..++.+|...
T Consensus       195 ~~~~~~-----ADIvV~AvG~p~~i~-~~~vk~GavVIDvGi~~  232 (285)
T PRK14191        195 SFYTQN-----ADIVCVGVGKPDLIK-ASMVKKGAVVVDIGINR  232 (285)
T ss_pred             HHHHHh-----CCEEEEecCCCCcCC-HHHcCCCcEEEEeeccc
Confidence            344443     899999999875422 44679999999998743

>PRK01581 speE spermidine synthase; Validated

Probab=96.27  E-value=0.078  Score=48.49  Aligned_cols=97  Identities=11%  Similarity=0.138  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC--------C--CceeecCChhhHHHHHHHHC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFG--------Y--DDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g--------~--~~v~~~~~~~~~~~~i~~~~  231 (356)
                      ....+|||.|  ||.|.++..+++..+. +|++++.+++-.+.++ .+.        +  +.-+...- .|..+.+.. .
T Consensus       149 ~~PkrVLIIG--gGdG~tlrelLk~~~v~~It~VEIDpeVIelAr-~~~~L~~~~~~~~~DpRV~vvi-~Da~~fL~~-~  223 (374)
T PRK01581        149 IDPKRVLILG--GGDGLALREVLKYETVLHVDLVDLDGSMINMAR-NVPELVSLNKSAFFDNRVNVHV-CDAKEFLSS-P  223 (374)
T ss_pred             CCCCEEEEEC--CCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-hccccchhccccCCCCceEEEE-CcHHHHHHh-c
Confidence            4457999999  5677778888887665 9999999998888888 421        0  11111111 333444443 3


Q ss_pred             CCCceEEEECCch------------hhHHHHHHhcccCCEEEEEe
Q 042784          232 PNGIDVYLDNVGG------------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       232 ~~~~d~vld~~g~------------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      .+.+|+||--...            +.+..+.+.|+++|.++.-.
T Consensus       224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            4579999743211            25678889999999987653

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.27  E-value=0.03  Score=49.41  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=48.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHHhC----CC---ceeecCChhhH----HHHHHHHC--
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKEEFG----YD---DAFNYNSEMSF----DAALTKYF--  231 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~~~g----~~---~v~~~~~~~~~----~~~i~~~~--  231 (356)
                      .+++|+||++++|...++.+...|++|+++++. +++.+.+.+++.    ..   ...|..+...+    .+.+.+..  
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~   81 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA   81 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence            478999999999999999998999999987643 444443332332    11   11244432222    22222221  


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                      -+++|+++.+.|
T Consensus        82 ~g~iD~lv~nAG   93 (267)
T TIGR02685        82 FGRCDVLVNNAS   93 (267)
T ss_pred             cCCceEEEECCc
Confidence            246999999987

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PLN03139 formate dehydrogenase; Provisional

Probab=96.26  E-value=0.062  Score=49.92  Aligned_cols=91  Identities=23%  Similarity=0.182  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++.+|.+|++.+++....+..+ +.|+..    .  .++.+.+.+     .|+|+-+..
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-~~g~~~----~--~~l~ell~~-----sDvV~l~lP  264 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-ETGAKF----E--EDLDAMLPK-----CDVVVINTP  264 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-hcCcee----c--CCHHHHHhh-----CCEEEEeCC
Confidence            5789999996 99999999999999999999887654444444 555431    1  234444433     799998776


Q ss_pred             hh-----hH-HHHHHhcccCCEEEEEeccc
Q 042784          244 GK-----ML-EAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~~-----~~-~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ..     .+ ...+..|+++..+|.++...
T Consensus       265 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~  294 (386)
T PLN03139        265 LTEKTRGMFNKERIAKMKKGVLIVNNARGA  294 (386)
T ss_pred             CCHHHHHHhCHHHHhhCCCCeEEEECCCCc
Confidence            31     22 35778899999888876543

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.26  E-value=0.21  Score=41.88  Aligned_cols=105  Identities=16%  Similarity=0.193  Sum_probs=64.3

Q ss_pred             HHhCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCC
Q 042784          157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       157 ~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      ....+++++++||=.|  .|.|..++.+++.. +.+|++++.+++..+.+++   .++...+-...  .+..+.+..+..
T Consensus        33 ~~~l~~~~~~~VLDiG--~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~--~d~~~~~~~~~~  108 (196)
T PRK07402         33 ISQLRLEPDSVLWDIG--AGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE--GSAPECLAQLAP  108 (196)
T ss_pred             HHhcCCCCCCEEEEeC--CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE--CchHHHHhhCCC
Confidence            3455678889987777  45566777777665 4699999999988877764   34543221111  223222322222


Q ss_pred             CCceEEEECCch--hhHHHHHHhcccCCEEEEEec
Q 042784          233 NGIDVYLDNVGG--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 ~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ..-+++++....  ..+..+.+.|+++|+++....
T Consensus       109 ~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        109 APDRVCIEGGRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence            222344543322  477888999999999887643

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.052  Score=47.12  Aligned_cols=80  Identities=18%  Similarity=0.201  Sum_probs=50.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      +.++||+|++|++|...++.+...|++|+... +++++.+.+.+   ..+...   ..|..+...+.+.+.++.  .+.+
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999888888899877665 34444333321   234321   124444344444444332  2468


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+++.+.|.
T Consensus        82 d~li~~ag~   90 (248)
T PRK06123         82 DALVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999998873

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.24  E-value=0.049  Score=46.50  Aligned_cols=100  Identities=19%  Similarity=0.179  Sum_probs=65.2

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      +...++++++||=.|  .|.|..++.+++..+.  +|++++.+++..+.+++   ++|.+.+.-..  .+..+...  ..
T Consensus        71 ~~l~~~~~~~VLDiG--~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~--~d~~~~~~--~~  144 (215)
T TIGR00080        71 ELLELKPGMKVLEIG--TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV--GDGTQGWE--PL  144 (215)
T ss_pred             HHhCCCCcCEEEEEC--CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE--CCcccCCc--cc
Confidence            456789999999998  5678888888888764  79999999887776654   33432211111  12211111  12


Q ss_pred             CCceEEEECCch-hhHHHHHHhcccCCEEEEE
Q 042784          233 NGIDVYLDNVGG-KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       233 ~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~  263 (356)
                      ..||+|+-.... .......+.|+++|+++..
T Consensus       145 ~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       145 APYDRIYVTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence            469998855433 3556678899999998754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=96.24  E-value=0.064  Score=47.32  Aligned_cols=107  Identities=13%  Similarity=0.148  Sum_probs=69.4

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC
Q 042784          154 VGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       154 ~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ..+....++.++.+||=.|+ | .|..+..+++..+++|++++.++...+.+++.+.....+.... .++.+  ..+..+
T Consensus        42 ~~~l~~l~l~~~~~VLDiGc-G-~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~-~D~~~--~~~~~~  116 (263)
T PTZ00098         42 TKILSDIELNENSKVLDIGS-G-LGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEA-NDILK--KDFPEN  116 (263)
T ss_pred             HHHHHhCCCCCCCEEEEEcC-C-CChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEE-CCccc--CCCCCC
Confidence            33444567899999999885 3 4666777787778899999999988888874433211111111 12110  011124


Q ss_pred             CceEEEECC-----c--h--hhHHHHHHhcccCCEEEEEec
Q 042784          234 GIDVYLDNV-----G--G--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       234 ~~d~vld~~-----g--~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .||+|+..-     .  .  ..+..+.+.|+|+|.++....
T Consensus       117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            699998621     2  1  267888899999999987654

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.22  E-value=0.029  Score=50.71  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHH---HhCCCce---eecCChhhHHHHHHHHC-CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLKE---EFGYDDA---FNYNSEMSFDAALTKYF-PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~~---~~g~~~v---~~~~~~~~~~~~i~~~~-~~~~  235 (356)
                      .|.+++|+|++|++|...++.+...|++|++.+++. ++.+.+.+   ..|....   .|..+.....+.+.+.. -+++
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~i   90 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGGL   90 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence            478999999999999999988888899999887643 33322221   2243211   13333222322222211 2579


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |++|.+.|.
T Consensus        91 D~li~nAG~   99 (306)
T PRK07792         91 DIVVNNAGI   99 (306)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.22  E-value=0.028  Score=47.27  Aligned_cols=98  Identities=11%  Similarity=0.065  Sum_probs=62.5

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC-CCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF-PNG  234 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~-~~~  234 (356)
                      ..+..++.+||-.|+  |.|..+..+++. |.+|++++.+++-.+.+++.   .+... ++... .++    .+.. ++.
T Consensus        25 ~l~~~~~~~vLDiGc--G~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~-~d~----~~~~~~~~   95 (197)
T PRK11207         25 AVKVVKPGKTLDLGC--GNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAV-VDL----NNLTFDGE   95 (197)
T ss_pred             hcccCCCCcEEEECC--CCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEe-cCh----hhCCcCCC
Confidence            344566789999984  457788888875 88999999998877666532   22221 11111 122    1111 346


Q ss_pred             ceEEEECCc-----h----hhHHHHHHhcccCCEEEEEec
Q 042784          235 IDVYLDNVG-----G----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       235 ~d~vld~~g-----~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ||+|+.+..     .    ..+....+.|+|+|.++.+..
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~  135 (197)
T PRK11207         96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  135 (197)
T ss_pred             cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            999997543     1    257788889999999765543

>PRK04457 spermidine synthase; Provisional

Probab=96.22  E-value=0.15  Score=44.99  Aligned_cols=96  Identities=10%  Similarity=0.140  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHCCCCceEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      ..+.+||+.|+  |.|..+..+++... .+|++++.+++-.+.+++.|+..   .-+.... .|..+.+.+. .+.+|+|
T Consensus        65 ~~~~~vL~IG~--G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~-~Da~~~l~~~-~~~yD~I  140 (262)
T PRK04457         65 PRPQHILQIGL--GGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE-ADGAEYIAVH-RHSTDVI  140 (262)
T ss_pred             CCCCEEEEECC--CHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE-CCHHHHHHhC-CCCCCEE
Confidence            45688999994  45888888888774 59999999999999988655532   1111111 3444444432 3469999


Q ss_pred             E-ECCc----------hhhHHHHHHhcccCCEEEE
Q 042784          239 L-DNVG----------GKMLEAVLNHVNVHARIIL  262 (356)
Q Consensus       239 l-d~~g----------~~~~~~~~~~l~~~G~~v~  262 (356)
                      + |...          .+.+..+.+.|+++|.++.
T Consensus       141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi  175 (262)
T PRK04457        141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV  175 (262)
T ss_pred             EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence            7 3321          2467888999999999886

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.20  E-value=0.031  Score=44.83  Aligned_cols=82  Identities=22%  Similarity=0.220  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecC---ChhhHHHHHHHHCC--CCceE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYN---SEMSFDAALTKYFP--NGIDV  237 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~---~~~~~~~~i~~~~~--~~~d~  237 (356)
                      .+|-.-||+|+++++|.++...+...|+.|+..+-..++-+...+++|..-+|...   ++++....+.+..+  +..|+
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~   86 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA   86 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence            44667799999999999999999999999999887777666655599987666443   23566665555443  46999


Q ss_pred             EEECCch
Q 042784          238 YLDNVGG  244 (356)
Q Consensus       238 vld~~g~  244 (356)
                      .++|.|.
T Consensus        87 ~vncagi   93 (260)
T KOG1199|consen   87 LVNCAGI   93 (260)
T ss_pred             eeeccce
Confidence            9999984

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=96.19  E-value=0.037  Score=48.00  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=51.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHH---HhCCC---ceeecCChhhHHHHHHHHC--CCCce
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKE---EFGYD---DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+++|+|++|++|...+..+...|++|+++ .+++++.+....   ..+..   ...|..+..++.+.+.++.  .+++|
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id   81 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLA   81 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCC
Confidence            479999999999999999888899998764 455554433321   22321   1234444344444444432  35799


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      +++.+.|.
T Consensus        82 ~vi~~ag~   89 (247)
T PRK09730         82 ALVNNAGI   89 (247)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.19  E-value=0.046  Score=47.74  Aligned_cols=79  Identities=18%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHHH---hCCC-c--eeecCChhhHHHHHHHHC--CCCce
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKEE---FGYD-D--AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~~---~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+++|+|++|++|..++..+...|++|++++++.. ..+...+.   .+.. .  ..|..+..++.+.+.++.  -+.+|
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRID   82 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            57999999999999999988889999999886532 22222112   2321 1  234444344433333332  13699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      +++.+.|.
T Consensus        83 ~vi~~ag~   90 (256)
T PRK12745         83 CLVNNAGV   90 (256)
T ss_pred             EEEECCcc
Confidence            99998863

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.19  E-value=0.041  Score=51.56  Aligned_cols=90  Identities=19%  Similarity=0.200  Sum_probs=57.4

Q ss_pred             EEEEcCCChHHHHHHHHHHHCC-C-EEEEEeCChHHHHHHHHHhC-CC---ceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKG-C-KVVGSTGSDDNVKLLKEEFG-YD---DAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G-~-~V~~~~~s~~~~~~~~~~~g-~~---~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      |+|+|+ |.+|..+++.+...+ . +|++.+++.++.+.+.+++. ..   ..+|..+..++.+.+     .+.|+||+|
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~-----~~~dvVin~   74 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELL-----RGCDVVINC   74 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHH-----TTSSEEEE-
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHH-----hcCCEEEEC
Confidence            789999 999999998888776 4 89999999999887764422 21   223444323333333     236999999


Q ss_pred             Cchh-hHHHHHHhcccCCEEEEE
Q 042784          242 VGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       242 ~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      +|.. ...-+..|++.+-+++..
T Consensus        75 ~gp~~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   75 AGPFFGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             SSGGGHHHHHHHHHHHT-EEEES
T ss_pred             CccchhHHHHHHHHHhCCCeecc
Confidence            9975 444445567778888874

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.18  E-value=0.032  Score=49.76  Aligned_cols=95  Identities=9%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCC-CC-ceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFP-NG-IDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~-~~-~d~vld~~g  243 (356)
                      +|+|+||+|.+|..+++.+...|.+|.+.++++++..    ..+.. ...|+.+...+.+.++.... .+ +|.++.+.+
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~   76 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAP   76 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence            4899999999999999998889999999998876542    22332 23566664555555543221 35 999998776


Q ss_pred             h-----hhHHHHHHhcccCC--EEEEEec
Q 042784          244 G-----KMLEAVLNHVNVHA--RIILCGM  265 (356)
Q Consensus       244 ~-----~~~~~~~~~l~~~G--~~v~~g~  265 (356)
                      .     ......++.++..|  ++|.++.
T Consensus        77 ~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss  105 (285)
T TIGR03649        77 PIPDLAPPMIKFIDFARSKGVRRFVLLSA  105 (285)
T ss_pred             CCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence            3     12334445554444  6777654

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=96.18  E-value=0.024  Score=51.63  Aligned_cols=76  Identities=20%  Similarity=0.316  Sum_probs=49.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC---Ccee--ecCChhhHHHHHHHHCCCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY---DDAF--NYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~---~~v~--~~~~~~~~~~~i~~~~~~~  234 (356)
                      ..+.+|||+||+|.+|..++..+...|.+|++++++.++.+.....+   +.   ...+  |..+..++.+.+     .+
T Consensus         3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-----~~   77 (325)
T PLN02989          3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI-----DG   77 (325)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH-----cC
Confidence            34789999999999999999999889999988876655433222111   11   1112  333323333333     24


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+|+.++|
T Consensus        78 ~d~vih~A~   86 (325)
T PLN02989         78 CETVFHTAS   86 (325)
T ss_pred             CCEEEEeCC
Confidence            899999887

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.17  E-value=0.61  Score=40.72  Aligned_cols=95  Identities=13%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      ..++.+||-.|+ |. |..+..+++ .|.+|++++.+++..+.+++.......+.    .++.+ + .+..+.||+|+..
T Consensus        40 ~~~~~~vLDiGc-G~-G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~~~~~~----~d~~~-~-~~~~~~fD~V~s~  110 (251)
T PRK10258         40 QRKFTHVLDAGC-GP-GWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAADHYLA----GDIES-L-PLATATFDLAWSN  110 (251)
T ss_pred             ccCCCeEEEeeC-CC-CHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCCCCEEE----cCccc-C-cCCCCcEEEEEEC
Confidence            346788999985 43 666655554 58899999999999998884332222221    11111 1 1123469999975


Q ss_pred             Cch-------hhHHHHHHhcccCCEEEEEec
Q 042784          242 VGG-------KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       242 ~g~-------~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ..-       ..+.++.+.|+++|.++....
T Consensus       111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        111 LAVQWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             chhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            432       267888999999999886543

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.16  E-value=0.092  Score=45.68  Aligned_cols=101  Identities=13%  Similarity=0.030  Sum_probs=70.4

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHC--
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYF--  231 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~--  231 (356)
                      ..+....++||=.|  ..+|+.++.+|+.+  +.+|+.++..++..+.+++   ..|...-++... .+..+.+.++.  
T Consensus        74 l~~~~~ak~iLEiG--T~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~-G~a~e~L~~l~~~  150 (247)
T PLN02589         74 LLKLINAKNTMEIG--VYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE-GPALPVLDQMIED  150 (247)
T ss_pred             HHHHhCCCEEEEEe--ChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe-ccHHHHHHHHHhc
Confidence            34555678999999  68899999999887  4599999998887777654   345444444433 44555555543  


Q ss_pred             ---CCCceEEEE-CCch---hhHHHHHHhcccCCEEEE
Q 042784          232 ---PNGIDVYLD-NVGG---KMLEAVLNHVNVHARIIL  262 (356)
Q Consensus       232 ---~~~~d~vld-~~g~---~~~~~~~~~l~~~G~~v~  262 (356)
                         .+.||.||- +--.   ..++.++++|+++|.++.
T Consensus       151 ~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        151 GKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             cccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence               147999974 4332   367888999999998774

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.16  E-value=0.017  Score=48.80  Aligned_cols=104  Identities=17%  Similarity=0.093  Sum_probs=70.6

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHC--
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYF--  231 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~--  231 (356)
                      ..+.....+||-.|  +.+|+.++.+|+.+  +.+|+.++.++++.+.+++   ..|....+.... .+..+.+.++.  
T Consensus        40 l~~~~~~k~vLEIG--t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~-gda~~~l~~l~~~  116 (205)
T PF01596_consen   40 LVRLTRPKRVLEIG--TFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE-GDALEVLPELAND  116 (205)
T ss_dssp             HHHHHT-SEEEEES--TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE-S-HHHHHHHHHHT
T ss_pred             HHHhcCCceEEEec--cccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE-eccHhhHHHHHhc
Confidence            34445668999999  67899999999887  4699999999988877764   345433333332 34444444442  


Q ss_pred             --CCCceEEE-ECCch---hhHHHHHHhcccCCEEEEEec
Q 042784          232 --PNGIDVYL-DNVGG---KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       232 --~~~~d~vl-d~~g~---~~~~~~~~~l~~~G~~v~~g~  265 (356)
                        .+.||.|| |+--.   ..+..++++|+++|.++.=..
T Consensus       117 ~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  117 GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             cCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence              24699996 55443   367889999999998885443

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.16  E-value=0.047  Score=47.40  Aligned_cols=80  Identities=21%  Similarity=0.231  Sum_probs=50.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHH---HhCCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKE---EFGYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      +.+++|+|++|++|...+..+...|++|+++.+ ++++.+.+.+   ..+.. ..  .|..+...+.+.+.+..  -+.+
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGKV   85 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            689999999999999999888888998877653 3444333321   22322 11  23333333444333332  1358


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+++.+.|.
T Consensus        86 d~vi~~ag~   94 (247)
T PRK12935         86 DILVNNAGI   94 (247)
T ss_pred             CEEEECCCC
Confidence            999998874

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=96.15  E-value=0.02  Score=48.19  Aligned_cols=103  Identities=21%  Similarity=0.295  Sum_probs=70.8

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC----cee----ecCChhhHHHHHHHHC--CCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD----DAF----NYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~----~v~----~~~~~~~~~~~i~~~~--~~~  234 (356)
                      |++++++|++||+|+.....+...|+++.++..+.|+.+... +|.+.    .++    |-.+..++....++..  -+.
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~a-kL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~   83 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIA-KLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGT   83 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHH-HHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCc
Confidence            899999999999999999999999999999998998877766 66542    121    1122244555555432  257


Q ss_pred             ceEEEECCch---hhH---------------HHHHHh-----cccCCEEEEEecccc
Q 042784          235 IDVYLDNVGG---KML---------------EAVLNH-----VNVHARIILCGMISQ  268 (356)
Q Consensus       235 ~d~vld~~g~---~~~---------------~~~~~~-----l~~~G~~v~~g~~~~  268 (356)
                      +|++|+..|-   ..+               ..++..     -.++|.+|.+++..+
T Consensus        84 iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~G  140 (261)
T KOG4169|consen   84 IDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAG  140 (261)
T ss_pred             eEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccc
Confidence            9999998873   111               112222     247789999887655

>PRK07574 formate dehydrogenase; Provisional

Probab=96.15  E-value=0.08  Score=49.23  Aligned_cols=91  Identities=18%  Similarity=0.141  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++.+|.+|++.+++....+..+ .+|...   +   .++.+.+.     ..|+|+-+..
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-~~g~~~---~---~~l~ell~-----~aDvV~l~lP  257 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-ELGLTY---H---VSFDSLVS-----VCDVVTIHCP  257 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-hcCcee---c---CCHHHHhh-----cCCEEEEcCC
Confidence            4679999996 99999999999999999999997754334333 455321   1   23444443     3899998876


Q ss_pred             hh-----hH-HHHHHhcccCCEEEEEeccc
Q 042784          244 GK-----ML-EAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~~-----~~-~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ..     .+ ...+..|+++..+|.++...
T Consensus       258 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~  287 (385)
T PRK07574        258 LHPETEHLFDADVLSRMKRGSYLVNTARGK  287 (385)
T ss_pred             CCHHHHHHhCHHHHhcCCCCcEEEECCCCc
Confidence            41     22 35678899999888876543

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.12  E-value=0.011  Score=43.95  Aligned_cols=88  Identities=17%  Similarity=0.199  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|||.|+ |.+|..-++.+...|++|++++...   +..+   +.-... .   ..+.+.   +  .++|+|+.+++
T Consensus         6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~---~~~~---~~i~~~-~---~~~~~~---l--~~~~lV~~at~   69 (103)
T PF13241_consen    6 KGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI---EFSE---GLIQLI-R---REFEED---L--DGADLVFAATD   69 (103)
T ss_dssp             TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE---HHHH---TSCEEE-E---SS-GGG---C--TTESEEEE-SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch---hhhh---hHHHHH-h---hhHHHH---H--hhheEEEecCC
Confidence            4789999998 9999999999999999999998665   2222   221111 1   223111   1  46999999999


Q ss_pred             hhhHH-HHHHhcccCCEEEEEeccc
Q 042784          244 GKMLE-AVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~~~~~-~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.++ ...+..+..|..+.+.+..
T Consensus        70 d~~~n~~i~~~a~~~~i~vn~~D~p   94 (103)
T PF13241_consen   70 DPELNEAIYADARARGILVNVVDDP   94 (103)
T ss_dssp             -HHHHHHHHHHHHHTTSEEEETT-C
T ss_pred             CHHHHHHHHHHHhhCCEEEEECCCc
Confidence            87554 4455567789888876543

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.11  E-value=0.03  Score=50.94  Aligned_cols=75  Identities=23%  Similarity=0.304  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC--C-ce--eecCChhhHHHHHHHHCCCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY--D-DA--FNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~--~-~v--~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      .|.+|||+||+|.+|..++..+...|.+|+++.++.++.+.+.+.+   +.  . ..  .|..+...+.+.+     .++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~   78 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAI-----EGC   78 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHH-----hCC
Confidence            4789999999999999999888888999998887765433322111   11  1 11  1233222333333     248


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+||.+.+
T Consensus        79 d~vih~A~   86 (322)
T PLN02986         79 DAVFHTAS   86 (322)
T ss_pred             CEEEEeCC
Confidence            99999876

>PLN03075 nicotianamine synthase; Provisional

Probab=96.10  E-value=0.059  Score=47.96  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHhCC----CceeecCChhhHHHHHHHHCCCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEFGY----DDAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~g~----~~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      ++++|+-.| +|+.++.++-+++..  +.+++.++.+++..+.+++.+..    ..-+.+.. .+..+....  .++||+
T Consensus       123 ~p~~VldIG-cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~-~Da~~~~~~--l~~FDl  198 (296)
T PLN03075        123 VPTKVAFVG-SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT-ADVMDVTES--LKEYDV  198 (296)
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE-Cchhhcccc--cCCcCE
Confidence            779999999 499999888888655  34899999999998888854422    12222221 222221101  246999


Q ss_pred             EEECC------ch--hhHHHHHHhcccCCEEEEE
Q 042784          238 YLDNV------GG--KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       238 vld~~------g~--~~~~~~~~~l~~~G~~v~~  263 (356)
                      |+..+      ..  ..+....+.|+|+|.++.-
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            98764      22  2788999999999998843

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.10  E-value=0.079  Score=48.46  Aligned_cols=89  Identities=19%  Similarity=0.187  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|++|.|.|. |.+|...++.++..|.+|++.+++.+.. ... .+|..    +   .++.+.+.+     .|+|+-++.
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~----~---~~l~ell~~-----aDiV~l~lP  213 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKPE-AEK-ELGAE----Y---RPLEELLRE-----SDFVSLHVP  213 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCChh-hHH-HcCCE----e---cCHHHHHhh-----CCEEEEeCC
Confidence            5789999997 9999999999999999999998765433 222 44432    1   234444433     799998876


Q ss_pred             hh-----hH-HHHHHhcccCCEEEEEeccc
Q 042784          244 GK-----ML-EAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~~-----~~-~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ..     .+ ...+..++++..++.++...
T Consensus       214 ~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~  243 (333)
T PRK13243        214 LTKETYHMINEERLKLMKPTAILVNTARGK  243 (333)
T ss_pred             CChHHhhccCHHHHhcCCCCeEEEECcCch
Confidence            42     22 46778899999888886543

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.10  E-value=0.096  Score=44.64  Aligned_cols=102  Identities=17%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChH-----HHHH--HHHHhCCCce---------------eecCCh
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDD-----NVKL--LKEEFGYDDA---------------FNYNSE  220 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~-----~~~~--~~~~~g~~~v---------------~~~~~~  220 (356)
                      +.++|+|.|. ||||-+++..+-..|+ ++..++..+-     +++.  +....|-..+               ++..+.
T Consensus        29 ~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~  107 (263)
T COG1179          29 KQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND  107 (263)
T ss_pred             hhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence            3578999997 9999999999999999 8877764321     1111  1001111100               111110


Q ss_pred             hhHHHHHHHHCCCCceEEEECCchh--hHHHHHHhcccCCEEEEEecc
Q 042784          221 MSFDAALTKYFPNGIDVYLDNVGGK--MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       221 ~~~~~~i~~~~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ---.+.+.++..+++|+|+||...-  -...+..|.+..=.++..+..
T Consensus       108 f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Ga  155 (263)
T COG1179         108 FITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGA  155 (263)
T ss_pred             hhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccc
Confidence            1112234455567899999999873  222333345555555555443

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.10  E-value=0.064  Score=48.51  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=61.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+|.|.|+ |.+|.+.+..++..|.  +|++.++++++.+.++ +.|......    .+..+.+     ..+|+||.|+.
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~~~~~----~~~~~~~-----~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLGDRVT----TSAAEAV-----KGADLVILCVP   75 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCCceec----CCHHHHh-----cCCCEEEECCC
Confidence            67999996 9999999888888885  8999999998888887 677531111    1222222     34899999998


Q ss_pred             hhh----HHHHHHhcccCCEEEEEec
Q 042784          244 GKM----LEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       244 ~~~----~~~~~~~l~~~G~~v~~g~  265 (356)
                      ...    +......++++..++.+|.
T Consensus        76 ~~~~~~v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         76 VGASGAVAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence            653    3333345667776666654

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.042  Score=48.14  Aligned_cols=81  Identities=14%  Similarity=0.176  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh----HHHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD----DNVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~----~~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--  231 (356)
                      .+.+++|+|++|++|.++++.+...|++|++++++.    ++.+.+.+   ..+...   ..|..+..++.+.+.+..  
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   86 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA   86 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence            367999999999999999998888999876665332    22222221   234321   234444344443333322  


Q ss_pred             CCCceEEEECCch
Q 042784          232 PNGIDVYLDNVGG  244 (356)
Q Consensus       232 ~~~~d~vld~~g~  244 (356)
                      .+++|++|.+.|.
T Consensus        87 ~~~id~li~~ag~   99 (257)
T PRK12744         87 FGRPDIAINTVGK   99 (257)
T ss_pred             hCCCCEEEECCcc
Confidence            2469999998873

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.08  E-value=0.068  Score=42.09  Aligned_cols=97  Identities=16%  Similarity=0.116  Sum_probs=67.5

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      .+++.....+..+....---.|.+|+|+|.+..+|.-++.++...|++|+......                     .++
T Consensus         7 ~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l   65 (140)
T cd05212           7 FVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQL   65 (140)
T ss_pred             ccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCH
Confidence            34555555555555433335699999999999999999999999999998876321                     123


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.+++     +|+|+-++|...+ ---+.++++..++.+|...
T Consensus        66 ~~~v~~-----ADIVvsAtg~~~~-i~~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          66 QSKVHD-----ADVVVVGSPKPEK-VPTEWIKPGATVINCSPTK  103 (140)
T ss_pred             HHHHhh-----CCEEEEecCCCCc-cCHHHcCCCCEEEEcCCCc
Confidence            333433     8999999998632 2245689999988777643

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07041 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.04  Score=47.29  Aligned_cols=74  Identities=16%  Similarity=0.265  Sum_probs=51.5

Q ss_pred             EEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCC-ce--eecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          169 FVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF--GYD-DA--FNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       169 lV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~--g~~-~v--~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|+|++|++|...++.+...|++|+++++++++.+.+.+.+  +.. ++  .|..+..++.+.+.+.  +.+|.++.+.|
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~id~li~~ag   78 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEA--GPFDHVVITAA   78 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhc--CCCCEEEECCC
Confidence            58999999999999888889999999998877665554333  221 12  2444434444444433  46899999887


Q ss_pred             h
Q 042784          244 G  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus        79 ~   79 (230)
T PRK07041         79 D   79 (230)
T ss_pred             C
Confidence            3

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.085  Score=44.20  Aligned_cols=63  Identities=19%  Similarity=0.261  Sum_probs=43.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +++|+|++|++|.+.+..+... .+|+.++++..           ....|..+..++.+.+.++  +++|+++.+.|
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-----------~~~~D~~~~~~~~~~~~~~--~~id~lv~~ag   64 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-----------DVQVDITDPASIRALFEKV--GKVDAVVSAAG   64 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------ceEecCCChHHHHHHHHhc--CCCCEEEECCC
Confidence            6899999999999887766666 89999886543           1124544433444444333  46899998887

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.05  E-value=0.66  Score=41.01  Aligned_cols=156  Identities=13%  Similarity=0.155  Sum_probs=85.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh-
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-  245 (356)
                      ++||+|++|.+|....+.+. -+.+|+++++.+               +|..+...+.+.+++.   ..|+||+|..-. 
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~~---~PDvVIn~AAyt~   62 (281)
T COG1091           2 KILITGANGQLGTELRRALP-GEFEVIATDRAE---------------LDITDPDAVLEVIRET---RPDVVINAAAYTA   62 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc---------------ccccChHHHHHHHHhh---CCCEEEECccccc
Confidence            38999999999998888887 556999987553               2333323455555543   478998877621 


Q ss_pred             ------------------hHHHHHHhcccCCEEEEEec---ccccccccccccchhhhhhh---------------hccc
Q 042784          246 ------------------MLEAVLNHVNVHARIILCGM---ISQYNKVWTERDGVRNLLNM---------------IGKE  289 (356)
Q Consensus       246 ------------------~~~~~~~~l~~~G~~v~~g~---~~~~~~~~~~~~~~~~~~~~---------------~~~~  289 (356)
                                        ..+-+..+-+-+..+|.++.   ..+.....+.+.....+...               ..+.
T Consensus        63 vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~~~~~  142 (281)
T COG1091          63 VDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAVRAAGPRH  142 (281)
T ss_pred             cccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHHHHHHHHHHhCCCE
Confidence                              11112223344566776652   22322221222222222211               1344


Q ss_pred             eEEEEEecccccchHHHHHHHHHHHHHcCC-eeeeeeEE---eChhhHHHHHHHHHcC
Q 042784          290 VKMEGFMIGSHMDRFADFTVEMESYIKEGK-IRSKHVIY---YGVESFLESLGSLFSS  343 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-i~~~~~~~---~~~~~~~~a~~~~~~~  343 (356)
                      +.++.+++.....  ......++++..+|. ++..-+..   ..-.++.++...+...
T Consensus       143 ~I~Rtswv~g~~g--~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~  198 (281)
T COG1091         143 LILRTSWVYGEYG--NNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEK  198 (281)
T ss_pred             EEEEeeeeecCCC--CCHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhc
Confidence            5556665544322  245667778888873 44333332   3467777777764433

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.04  E-value=0.075  Score=47.25  Aligned_cols=79  Identities=13%  Similarity=0.133  Sum_probs=56.8

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      --.|.+|+|.|.+|-+|...+.++...|++|++..+.   .                  .++.+.+     ..+|+|+.+
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---t------------------~~L~~~~-----~~aDIvI~A  209 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---T------------------QNLPELV-----KQADIIVGA  209 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---c------------------hhHHHHh-----ccCCEEEEc
Confidence            3578999999984459999999999999977766531   1                  2222223     348999999


Q ss_pred             CchhhHHHHHHhcccCCEEEEEeccc
Q 042784          242 VGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       242 ~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +|.+.+ --...++++..++.+|...
T Consensus       210 tG~~~~-v~~~~lk~gavViDvg~n~  234 (283)
T PRK14192        210 VGKPEL-IKKDWIKQGAVVVDAGFHP  234 (283)
T ss_pred             cCCCCc-CCHHHcCCCCEEEEEEEee
Confidence            987532 2235689999999998754

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.04  E-value=0.081  Score=45.04  Aligned_cols=99  Identities=24%  Similarity=0.236  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--------------eecCChhhHHHHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--------------FNYNSEMSFDAALT  228 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--------------~~~~~~~~~~~~i~  228 (356)
                      .++.+||+.|.  |.|.-++-+|. .|.+|++++.|+.-.+.+.++.+....              ++... .|+.+ +.
T Consensus        33 ~~~~rvLd~GC--G~G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~D~~~-~~  107 (213)
T TIGR03840        33 PAGARVFVPLC--GKSLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC-GDFFA-LT  107 (213)
T ss_pred             CCCCeEEEeCC--CchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE-ccCCC-CC
Confidence            57789999994  56787888875 699999999999988876434443210              00000 11111 00


Q ss_pred             HHCCCCceEEEECCch---------hhHHHHHHhcccCCEEEEEecc
Q 042784          229 KYFPNGIDVYLDNVGG---------KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       229 ~~~~~~~d~vld~~g~---------~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ....+.||.|+|+.--         ..+....++|+|+|+++.++..
T Consensus       108 ~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       108 AADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             cccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            0001358999996531         2677888999999987766553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN00203 glutamyl-tRNA reductase

Probab=96.03  E-value=0.12  Score=49.92  Aligned_cols=74  Identities=27%  Similarity=0.351  Sum_probs=53.8

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +.+|+|.|+ |.+|.+++..+...|+ +|+++.++.++.+.+.++++... +.+....+..+.+     ..+|+||.|++
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~-i~~~~~~dl~~al-----~~aDVVIsAT~  338 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVE-IIYKPLDEMLACA-----AEADVVFTSTS  338 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCc-eEeecHhhHHHHH-----hcCCEEEEccC
Confidence            789999997 9999999999999998 89999999998887775664221 1111112233333     35899999987


Q ss_pred             hh
Q 042784          244 GK  245 (356)
Q Consensus       244 ~~  245 (356)
                      ..
T Consensus       339 s~  340 (519)
T PLN00203        339 SE  340 (519)
T ss_pred             CC
Confidence            64

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=96.03  E-value=0.05  Score=50.13  Aligned_cols=81  Identities=15%  Similarity=0.137  Sum_probs=49.8

Q ss_pred             CCCCEEEEEcCCChHHHH--HHHHHHHCCCEEEEEeCCh--HH--------------HHHHHHHhCCC-cee--ecCChh
Q 042784          163 KSGSNVFVSAAAGGVGMF--AGQLAKLKGCKVVGSTGSD--DN--------------VKLLKEEFGYD-DAF--NYNSEM  221 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~--~i~la~~~G~~V~~~~~s~--~~--------------~~~~~~~~g~~-~v~--~~~~~~  221 (356)
                      ..++++||+|+++++|++  +++.+ ..|++|+++....  .+              .+.++ +.|.. ..+  |..+..
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~-~~G~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAK-AAGLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHH-hcCCceEEEEcCCCCHH
Confidence            456899999999999999  45555 8899888776321  11              22333 55653 222  333323


Q ss_pred             hHHHHHHHHC--CCCceEEEECCchh
Q 042784          222 SFDAALTKYF--PNGIDVYLDNVGGK  245 (356)
Q Consensus       222 ~~~~~i~~~~--~~~~d~vld~~g~~  245 (356)
                      ...+.+.++.  -+++|+++.+++..
T Consensus       117 ~v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        117 IKQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccC
Confidence            3333333322  24699999998864

>PRK12827 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.052  Score=47.08  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=49.8

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC----ChHHHHHHHHH---hCCC-ce--eecCChhhHHHHHHHHC--C
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG----SDDNVKLLKEE---FGYD-DA--FNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~----s~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~i~~~~--~  232 (356)
                      +.+++|+|++|++|...+..+...|++|+.+++    +.++.+.+.++   .+.. .+  .|..+...+...+.++.  .
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   85 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEEF   85 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            578999999999999999888889999888654    23333333222   2322 11  23343333433333322  2


Q ss_pred             CCceEEEECCch
Q 042784          233 NGIDVYLDNVGG  244 (356)
Q Consensus       233 ~~~d~vld~~g~  244 (356)
                      +++|.+|.+.|.
T Consensus        86 ~~~d~vi~~ag~   97 (249)
T PRK12827         86 GRLDILVNNAGI   97 (249)
T ss_pred             CCCCEEEECCCC
Confidence            469999998873

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.02  E-value=0.051  Score=47.20  Aligned_cols=78  Identities=18%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHH---HhCCC-ce--eecCChhhHHHHHHHHC--CCCce
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKE---EFGYD-DA--FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+++|+|++|++|..+++.+...|++|+.+. +++++.+.+.+   ..+.. ..  .|..+..++.+.+.++.  -+.+|
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   82 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRLD   82 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCCC
Confidence            5799999999999999988888899887664 44444333321   22322 11  23333334444333322  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      ++|.+.|
T Consensus        83 ~li~~ag   89 (248)
T PRK06947         83 ALVNNAG   89 (248)
T ss_pred             EEEECCc
Confidence            9999887

>PRK07023 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.05  Score=47.16  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=48.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHH-----HC-CCCceE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTK-----YF-PNGIDV  237 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~-----~~-~~~~d~  237 (356)
                      ++||+|++|++|..+++.+...|++|++++++.++. ... ..+..   ...|..+..++.+.+.+     +. .+..|.
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~-~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS-LAA-AAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVL   80 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh-hhh-ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceE
Confidence            799999999999999988888899999998775542 222 33432   12344443334332222     11 236888


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ++.+.|
T Consensus        81 ~v~~ag   86 (243)
T PRK07023         81 LINNAG   86 (243)
T ss_pred             EEEcCc
Confidence            988876

>PLN02928 oxidoreductase family protein

Probab=95.95  E-value=0.11  Score=47.76  Aligned_cols=95  Identities=14%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC-----Cceee-cCChhhHHHHHHHHCCCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY-----DDAFN-YNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~-----~~v~~-~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      .|.++.|.|. |.+|..+++.++.+|++|++.+++..+....  .++.     ....+ .....++.+.+.+     .|+
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~ell~~-----aDi  229 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSWTSEPED--GLLIPNGDVDDLVDEKGGHEDIYEFAGE-----ADI  229 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCChhhhh--hhccccccccccccccCcccCHHHHHhh-----CCE
Confidence            4789999996 9999999999999999999998763321111  1110     00010 0011345555543     799


Q ss_pred             EEECCchh------hHHHHHHhcccCCEEEEEecc
Q 042784          238 YLDNVGGK------MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       238 vld~~g~~------~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      |+-++...      .-...+..|+++..+|.++..
T Consensus       230 Vvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG  264 (347)
T PLN02928        230 VVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARG  264 (347)
T ss_pred             EEECCCCChHhhcccCHHHHhcCCCCeEEEECCCc
Confidence            99887631      225678899999999988754

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=95.95  E-value=0.079  Score=45.82  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=49.1

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHHHhC---CC-c--eeecCChhhHHHHHHHHC--CCCce
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKEEFG---YD-D--AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~~~g---~~-~--v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+++|+|++|++|..+++.+...|++|++++++.. ........++   .. .  ..|..+..++.+.+.++.  -+.+|
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id   82 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVD   82 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            47999999999999999888888999999987743 1111211222   11 1  124444334444343322  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++.+.|
T Consensus        83 ~vi~~ag   89 (245)
T PRK12824         83 ILVNNAG   89 (245)
T ss_pred             EEEECCC
Confidence            9999887

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.94  E-value=0.085  Score=47.15  Aligned_cols=77  Identities=13%  Similarity=0.197  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh---HHHHHHHHHhCCC--ceeecCChhhHHHHHHHHCCCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD---DNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~---~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      .+.+++|.|+ ||.+.+++..+...|+ +|+++.|++   ++.+.+.+.++..  ..+......+ .+.+.+. -..+|+
T Consensus       123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~-~~~l~~~-~~~aDi  199 (288)
T PRK12749        123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-QQAFAEA-LASADI  199 (288)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhh-hhhhhhh-cccCCE
Confidence            5689999997 9999987777777898 899999884   3555554455431  0111111011 1112111 135899


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      |++|+.
T Consensus       200 vINaTp  205 (288)
T PRK12749        200 LTNGTK  205 (288)
T ss_pred             EEECCC
Confidence            999875

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.94  E-value=0.14  Score=44.96  Aligned_cols=97  Identities=19%  Similarity=0.225  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHCCCCceEEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      .++.+||=.|  +|.|..+..+++. |.+|++++.+++..+.+++..   |...-+.... .+..+ +.....+.||+|+
T Consensus        43 ~~~~~vLDiG--cG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~-~d~~~-l~~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAG--GGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH-CAAQD-IAQHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeC--CCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEE-cCHHH-HhhhcCCCCCEEE
Confidence            4567888888  5678888888875 889999999999888877432   2211111110 12221 2222235799998


Q ss_pred             ECCc-----h--hhHHHHHHhcccCCEEEEEe
Q 042784          240 DNVG-----G--KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       240 d~~g-----~--~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ....     .  ..+..+.+.|+|+|.++.+-
T Consensus       118 ~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        118 FHAVLEWVADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             ehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            6432     2  26788999999999998653

>PRK08317 hypothetical protein; Provisional

Probab=95.92  E-value=0.084  Score=45.47  Aligned_cols=103  Identities=21%  Similarity=0.262  Sum_probs=67.8

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHh-CCCceeecCChhhHHHHHHHHCCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEEF-GYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~~-g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      +...+.++++||-.|+ |. |..+..+++..+  .++++++.+++..+.+++.. .....+.+.. .+... . .+..+.
T Consensus        13 ~~~~~~~~~~vLdiG~-G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~-~d~~~-~-~~~~~~   87 (241)
T PRK08317         13 ELLAVQPGDRVLDVGC-GP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR-GDADG-L-PFPDGS   87 (241)
T ss_pred             HHcCCCCCCEEEEeCC-CC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEe-ccccc-C-CCCCCC
Confidence            4567889999999996 44 888889998874  59999999998888887331 1111111111 11110 0 122356


Q ss_pred             ceEEEECCc-----h--hhHHHHHHhcccCCEEEEEec
Q 042784          235 IDVYLDNVG-----G--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       235 ~d~vld~~g-----~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +|+|+....     .  ..+..+.++|+++|.++....
T Consensus        88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            999886432     2  277889999999999987653

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=95.90  E-value=0.047  Score=49.24  Aligned_cols=40  Identities=13%  Similarity=0.254  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC--CChHHHHHHHHHHHCCCEEEEEeCChHHHHH
Q 042784          164 SGSNVFVSAA--AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKL  204 (356)
Q Consensus       164 ~g~~VlV~g~--~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~  204 (356)
                      .|+++||+|+  ++|+|.++++.+...|++|++ .+...+++.
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~   49 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNI   49 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhH
Confidence            4899999999  799999999999999999988 445444433

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.89  E-value=0.054  Score=46.85  Aligned_cols=79  Identities=27%  Similarity=0.349  Sum_probs=50.0

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHH---HhCCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKE---EFGYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~---~~g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      ..+|||+|++|.+|..++..+...|.+|+++.++.. ..+.+.+   ..+.. ..  .|..+..++.+.+.+..  -+++
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i   85 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGRI   85 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCCC
Confidence            568999999999999999999899998877665543 3332221   22221 11  24444344444443332  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |.+|.+.|
T Consensus        86 d~vi~~ag   93 (249)
T PRK12825         86 DILVNNAG   93 (249)
T ss_pred             CEEEECCc
Confidence            99999887

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.89  E-value=0.71  Score=41.93  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=56.4

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----------hCCC-----ceeecCChhhHHHHHHHH
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE----------FGYD-----DAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~----------~g~~-----~v~~~~~~~~~~~~i~~~  230 (356)
                      .+|.|.|+ |.+|...++.+...|.+|.+.+.+++..+.+++.          .|..     .-+.+.  .++.+.+   
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~--~~l~~av---   81 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV--ATIEACV---   81 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec--CCHHHHh---
Confidence            58999997 9999988888888899999999988765544321          1110     001111  1222222   


Q ss_pred             CCCCceEEEECCchh------hHHHHHHhcccCCEEEEE
Q 042784          231 FPNGIDVYLDNVGGK------MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       231 ~~~~~d~vld~~g~~------~~~~~~~~l~~~G~~v~~  263 (356)
                        .++|+|++|+...      .+..+.+.++++. ++..
T Consensus        82 --~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaS  117 (321)
T PRK07066         82 --ADADFIQESAPEREALKLELHERISRAAKPDA-IIAS  117 (321)
T ss_pred             --cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEE
Confidence              4689999998753      4555555666654 4433

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.89  E-value=0.19  Score=38.03  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=61.1

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh--
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK--  245 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~--  245 (356)
                      |+|.|. |.+|...++.++..+.+|++++.++++.+.++ +.|.. ++..+  ..-.+.+++..-..++.++-+++++  
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~-~~~~~-~i~gd--~~~~~~l~~a~i~~a~~vv~~~~~d~~   75 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELR-EEGVE-VIYGD--ATDPEVLERAGIEKADAVVILTDDDEE   75 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-HTTSE-EEES---TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH-hcccc-ccccc--chhhhHHhhcCccccCEEEEccCCHHH
Confidence            678897 99999999999997779999999999999998 66744 44322  1222234443324689999888775  


Q ss_pred             --hHHHHHHhcccCCEEEEE
Q 042784          246 --MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       246 --~~~~~~~~l~~~G~~v~~  263 (356)
                        ......+.+.+..+++..
T Consensus        76 n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   76 NLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             HHHHHHHHHHHTTTSEEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEEE
Confidence              222344445566666644

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN00016 RNA-binding protein; Provisional

Probab=95.89  E-value=0.062  Score=50.16  Aligned_cols=96  Identities=17%  Similarity=0.231  Sum_probs=60.4

Q ss_pred             CCEEEEE----cCCChHHHHHHHHHHHCCCEEEEEeCChHHHHH-----------HHHHhCCCceeecCChhhHHHHHHH
Q 042784          165 GSNVFVS----AAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKL-----------LKEEFGYDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       165 g~~VlV~----g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~-----------~~~~~g~~~v~~~~~~~~~~~~i~~  229 (356)
                      ..+|||+    ||+|-+|..++..+...|.+|+++++++.....           +. ..|... +.. +..++.+.+  
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~-v~~-D~~d~~~~~--  126 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKT-VWG-DPADVKSKV--  126 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh-hcCceE-EEe-cHHHHHhhh--
Confidence            4689999    999999999998888889999999987654221           11 223332 211 112222222  


Q ss_pred             HCCCCceEEEECCchh--hHHHHHHhcccC--CEEEEEecc
Q 042784          230 YFPNGIDVYLDNVGGK--MLEAVLNHVNVH--ARIILCGMI  266 (356)
Q Consensus       230 ~~~~~~d~vld~~g~~--~~~~~~~~l~~~--G~~v~~g~~  266 (356)
                       ...++|+|+++.+..  .....++.++..  .+++.++..
T Consensus       127 -~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~  166 (378)
T PLN00016        127 -AGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSA  166 (378)
T ss_pred             -ccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccH
Confidence             234799999998753  334455555433  378876653

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=95.89  E-value=0.035  Score=49.23  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=46.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC----CCce--------eecCChhhHHHHHHHHCC-C
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFG----YDDA--------FNYNSEMSFDAALTKYFP-N  233 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g----~~~v--------~~~~~~~~~~~~i~~~~~-~  233 (356)
                      |||+||+|++|...++-+...+. +++.+++++.++-.++.++.    ...+        -|.++    .+.+.++.. .
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd----~~~l~~~~~~~   76 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRD----KERLNRIFEEY   76 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCH----HHHHHHHTT--
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccC----HHHHHHHHhhc
Confidence            79999999999998888877787 89999999988877776662    2111        13332    223444432 3


Q ss_pred             CceEEEECCch
Q 042784          234 GIDVYLDNVGG  244 (356)
Q Consensus       234 ~~d~vld~~g~  244 (356)
                      ++|+||.++.-
T Consensus        77 ~pdiVfHaAA~   87 (293)
T PF02719_consen   77 KPDIVFHAAAL   87 (293)
T ss_dssp             T-SEEEE----
T ss_pred             CCCEEEEChhc
Confidence            79999998874

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.88  E-value=0.086  Score=46.63  Aligned_cols=96  Identities=19%  Similarity=0.109  Sum_probs=69.2

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -.||+....+..+....---.|++|+|.|-+.-+|.-...+++..|++|++.....                     +++
T Consensus       138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l  196 (285)
T PRK10792        138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNL  196 (285)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCH
Confidence            35666666666665433223599999999988899999999999999988765221                     234


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      .+.+++     +|+++.++|.+.+-. -..++++..++.+|..
T Consensus       197 ~~~~~~-----ADIvi~avG~p~~v~-~~~vk~gavVIDvGin  233 (285)
T PRK10792        197 RHHVRN-----ADLLVVAVGKPGFIP-GEWIKPGAIVIDVGIN  233 (285)
T ss_pred             HHHHhh-----CCEEEEcCCCccccc-HHHcCCCcEEEEcccc
Confidence            444433     899999999875422 3788999999999864

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.86  E-value=0.1  Score=44.89  Aligned_cols=99  Identities=14%  Similarity=0.287  Sum_probs=61.9

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC---EEEEEeCC----hHH--------HHHHHHHhCCCceeecC
Q 042784          154 VGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC---KVVGSTGS----DDN--------VKLLKEEFGYDDAFNYN  218 (356)
Q Consensus       154 ~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~---~V~~~~~s----~~~--------~~~~~~~~g~~~v~~~~  218 (356)
                      .++.....--.+.+++|.|+ |+.|..++..+...|+   +|+.++++    .++        .++++ .++... .+  
T Consensus        14 ~al~~~g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~-~~~~~~-~~--   88 (226)
T cd05311          14 NALKLVGKKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK-ETNPEK-TG--   88 (226)
T ss_pred             HHHHHhCCCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHH-HhccCc-cc--
Confidence            34443332245789999997 9999999988888897   48888877    343        23333 443221 11  


Q ss_pred             ChhhHHHHHHHHCCCCceEEEECCchhhH-HHHHHhcccCCEEEEEe
Q 042784          219 SEMSFDAALTKYFPNGIDVYLDNVGGKML-EAVLNHVNVHARIILCG  264 (356)
Q Consensus       219 ~~~~~~~~i~~~~~~~~d~vld~~g~~~~-~~~~~~l~~~G~~v~~g  264 (356)
                        .++.+.++     ++|++|.+++...+ ...++.+++...++.+.
T Consensus        89 --~~l~~~l~-----~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls  128 (226)
T cd05311          89 --GTLKEALK-----GADVFIGVSRPGVVKKEMIKKMAKDPIVFALA  128 (226)
T ss_pred             --CCHHHHHh-----cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC
Confidence              13434442     38999999974333 35566666766665444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.86  E-value=0.096  Score=49.82  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=57.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKM  246 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~  246 (356)
                      +|.|.||.|.+|.+.+..++..|.+|++.++++++......++|.. .   .  .+..+.+     ..+|+|+-|+....
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~-~---~--~~~~e~~-----~~aDvVIlavp~~~   70 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVE-Y---A--NDNIDAA-----KDADIVIISVPINV   70 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCe-e---c--cCHHHHh-----ccCCEEEEecCHHH
Confidence            6899997799999999999999999999998877753333366652 1   1  1222222     23688887777543


Q ss_pred             ----HHHHHHhcccCCEEEEEec
Q 042784          247 ----LEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       247 ----~~~~~~~l~~~G~~v~~g~  265 (356)
                          +......++++..++.++.
T Consensus        71 ~~~vl~~l~~~l~~~~iViDvsS   93 (437)
T PRK08655         71 TEDVIKEVAPHVKEGSLLMDVTS   93 (437)
T ss_pred             HHHHHHHHHhhCCCCCEEEEccc
Confidence                3333344556666666654

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.85  E-value=0.058  Score=49.79  Aligned_cols=77  Identities=22%  Similarity=0.294  Sum_probs=50.8

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCC-cee--ecCChhhHHHHHHHHCCCCce
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF--GYD-DAF--NYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~--g~~-~v~--~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      -..+.+|||+|++|.+|..+++.+...|.+|++++++.++...+...+  +.. .++  |..+...+.+.+     .++|
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~d   81 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAV-----KGCD   81 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHH-----cCCC
Confidence            356789999999999999999988889999999887766554433232  111 122  333322232222     2489


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +||.+.+
T Consensus        82 ~Vih~A~   88 (353)
T PLN02896         82 GVFHVAA   88 (353)
T ss_pred             EEEECCc
Confidence            9999876

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.83  E-value=0.071  Score=48.54  Aligned_cols=95  Identities=18%  Similarity=0.181  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHH-HCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAK-LKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~-~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      -.+.+|+|+||+|.+|..+++.+. ..|. +++.+.+++++...+.++++...+      .++.+.+     ..+|+|+.
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i------~~l~~~l-----~~aDiVv~  221 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKI------LSLEEAL-----PEADIVVW  221 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccH------HhHHHHH-----ccCCEEEE
Confidence            467899999999999999887775 4576 899999888888777655542211      2233333     24899999


Q ss_pred             CCchh-hHHHHHHhcccCCEEEEEecccc
Q 042784          241 NVGGK-MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       241 ~~g~~-~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +++.. .+..-...+++.-.++.++.+-.
T Consensus       222 ~ts~~~~~~I~~~~l~~~~~viDiAvPRD  250 (340)
T PRK14982        222 VASMPKGVEIDPETLKKPCLMIDGGYPKN  250 (340)
T ss_pred             CCcCCcCCcCCHHHhCCCeEEEEecCCCC
Confidence            98863 22111234566667777777544

>PLN02686 cinnamoyl-CoA reductase

Probab=95.83  E-value=0.062  Score=49.97  Aligned_cols=44  Identities=14%  Similarity=0.117  Sum_probs=36.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK  206 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~  206 (356)
                      ..+++|||+||+|.+|..++..+...|++|+++.++.++.+.++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~   94 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR   94 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            55789999999999999999999999999988877766554443

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.82  E-value=0.14  Score=46.51  Aligned_cols=89  Identities=19%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.++.|.|. |.+|.+..+.++..|.+|+..+++.. .+..+ .+++.    |.   ++.+.+.+     .|++.-...
T Consensus       145 ~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~-~~~~~----y~---~l~ell~~-----sDii~l~~P  209 (324)
T COG1052         145 RGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPN-PEAEK-ELGAR----YV---DLDELLAE-----SDIISLHCP  209 (324)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCCC-hHHHh-hcCce----ec---cHHHHHHh-----CCEEEEeCC
Confidence            4899999996 99999999999999999999987765 33333 44433    22   24444543     788876654


Q ss_pred             h--h----hHHHHHHhcccCCEEEEEeccc
Q 042784          244 G--K----MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~--~----~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .  +    .-...+..|++++.+|.++...
T Consensus       210 lt~~T~hLin~~~l~~mk~ga~lVNtaRG~  239 (324)
T COG1052         210 LTPETRHLINAEELAKMKPGAILVNTARGG  239 (324)
T ss_pred             CChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence            3  2    2246788999999999887644

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=95.79  E-value=0.049  Score=46.78  Aligned_cols=74  Identities=16%  Similarity=0.188  Sum_probs=52.9

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      |||+||+|-+|..++..+...|..|+++.++.........+.... ...|..+...+.+.+...   .+|.||.+.+.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~---~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKA---NIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHH---TESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeecccccccccccccc---CceEEEEeecc
Confidence            799999999999999999999999988887777665554233221 223555534555555543   68999998774

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.78  E-value=0.052  Score=50.06  Aligned_cols=49  Identities=12%  Similarity=0.032  Sum_probs=39.7

Q ss_pred             hHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH
Q 042784          151 AAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD  200 (356)
Q Consensus       151 ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~  200 (356)
                      |||.-++....++ +.+|||+||+|-+|..++..+...|.+|+++++...
T Consensus         2 ~~~~~~~~~~~~~-~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~   50 (348)
T PRK15181          2 TAYEELRTKLVLA-PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST   50 (348)
T ss_pred             chhhhhhhccccc-CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            6777776555444 579999999999999999999989999999987543

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.78  E-value=0.093  Score=46.80  Aligned_cols=96  Identities=17%  Similarity=0.105  Sum_probs=67.5

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+....+..+....---.|++|.|.|.++.+|.-...++...|++|++..+...                     +.
T Consensus       138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---------------------~l  196 (301)
T PRK14194        138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---------------------DA  196 (301)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---------------------CH
Confidence            456666666666654433346999999999789999999999999999988753321                     12


Q ss_pred             HHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.++     .+|+|+-++|.+ .+...  .++++..++.+|...
T Consensus       197 ~e~~~-----~ADIVIsavg~~~~v~~~--~ik~GaiVIDvgin~  234 (301)
T PRK14194        197 KALCR-----QADIVVAAVGRPRLIDAD--WLKPGAVVIDVGINR  234 (301)
T ss_pred             HHHHh-----cCCEEEEecCChhcccHh--hccCCcEEEEecccc
Confidence            22232     379999999986 33333  389999999998643

>PRK14967 putative methyltransferase; Provisional

Probab=95.76  E-value=0.25  Score=42.42  Aligned_cols=95  Identities=19%  Similarity=0.147  Sum_probs=62.8

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCc
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ..++++++||-.|+ |. |..++.+++. ++ +|++++.+++..+.+++   ..+....+..   .++.+.+   ..+.|
T Consensus        32 ~~~~~~~~vLDlGc-G~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~---~d~~~~~---~~~~f  102 (223)
T PRK14967         32 EGLGPGRRVLDLCT-GS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR---GDWARAV---EFRPF  102 (223)
T ss_pred             cccCCCCeEEEecC-CH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE---Cchhhhc---cCCCe
Confidence            45788999999995 55 8888888875 66 99999999987776653   2333211211   2332222   23579


Q ss_pred             eEEEECCch----------------------------hhHHHHHHhcccCCEEEEE
Q 042784          236 DVYLDNVGG----------------------------KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       236 d~vld~~g~----------------------------~~~~~~~~~l~~~G~~v~~  263 (356)
                      |+|+.....                            ..+..+.+.|+++|+++.+
T Consensus       103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            999975210                            1345678899999998865

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.74  E-value=0.071  Score=42.98  Aligned_cols=99  Identities=19%  Similarity=0.133  Sum_probs=60.9

Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      .-+|++....+..+....---.|++|+|.|.+..+|.-...+++..|+.|.......                     ++
T Consensus        14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~   72 (160)
T PF02882_consen   14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KN   72 (160)
T ss_dssp             SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SS
T ss_pred             CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Cc
Confidence            455666666666665433335799999999999999999999999999998764221                     22


Q ss_pred             HHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccc
Q 042784          223 FDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +.+.++     .+|+|+-++|.+.+- --..++++..++.+|....
T Consensus        73 l~~~~~-----~ADIVVsa~G~~~~i-~~~~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   73 LQEITR-----RADIVVSAVGKPNLI-KADWIKPGAVVIDVGINYV  112 (160)
T ss_dssp             HHHHHT-----TSSEEEE-SSSTT-B--GGGS-TTEEEEE--CEEE
T ss_pred             ccceee-----eccEEeeeecccccc-ccccccCCcEEEecCCccc
Confidence            333332     389999999986442 2346899888888887543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.74  E-value=0.079  Score=46.36  Aligned_cols=80  Identities=18%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCC-----------hHHHHHHHH---HhCCC-c--eeecCChhhHH
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGS-----------DDNVKLLKE---EFGYD-D--AFNYNSEMSFD  224 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s-----------~~~~~~~~~---~~g~~-~--v~~~~~~~~~~  224 (356)
                      .+.++||+|++|  ++|.+.+..+...|++|++++++           ..+...+.+   ..+.. +  ..|..+..++.
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   83 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPN   83 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            357899999984  89999888888889999999876           222111221   22322 1  12444433444


Q ss_pred             HHHHHHC--CCCceEEEECCc
Q 042784          225 AALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       225 ~~i~~~~--~~~~d~vld~~g  243 (356)
                      ..+.++.  -+.+|+++.+.|
T Consensus        84 ~~~~~~~~~~g~id~vi~~ag  104 (256)
T PRK12748         84 RVFYAVSERLGDPSILINNAA  104 (256)
T ss_pred             HHHHHHHHhCCCCCEEEECCC
Confidence            4344332  146999999886

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=95.73  E-value=0.074  Score=46.58  Aligned_cols=43  Identities=33%  Similarity=0.393  Sum_probs=33.4

Q ss_pred             EEEEEcCCChHHHHHHHH-HHH---CCCEEEEEeCChHHHHHHHHHh
Q 042784          167 NVFVSAAAGGVGMFAGQL-AKL---KGCKVVGSTGSDDNVKLLKEEF  209 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~l-a~~---~G~~V~~~~~s~~~~~~~~~~~  209 (356)
                      .++|+|+++++|.+++.. ++.   .|++|+.+.+++++.+.+.+++
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l   48 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEI   48 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHH
Confidence            589999999999987654 442   6999999999888776655443

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.71  E-value=0.23  Score=43.87  Aligned_cols=128  Identities=18%  Similarity=0.139  Sum_probs=84.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee--e------cCC--hhhHHHHHHHHC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF--N------YNS--EMSFDAALTKYF  231 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~--~------~~~--~~~~~~~i~~~~  231 (356)
                      --++.++++.|+ |..|+.++..++..|+-|...+....+.+..+ ++|+...-  +      |-.  ..+|.++-.++.
T Consensus       161 tv~pA~vlv~G~-Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~-s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~  238 (356)
T COG3288         161 TVSPAKVLVIGA-GVAGLAAIATAVRLGAIVTARDLRMFKKEQVE-SLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV  238 (356)
T ss_pred             cccchhhhhhhH-HHHHHHHHHHHhhcceEEehhhhhhHHhhhhh-hcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence            356678899997 99999999999999999999988888888887 78874221  1      110  023333222222


Q ss_pred             ---CCCceEEEECC---chh----hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEe
Q 042784          232 ---PNGIDVYLDNV---GGK----MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFM  296 (356)
Q Consensus       232 ---~~~~d~vld~~---g~~----~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (356)
                         -+++|+||-+.   |.+    .-......++|+..+|.+....+.+-..+.     +..-....++++.|+.
T Consensus       239 a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~-----pg~~v~~~gV~iig~~  308 (356)
T COG3288         239 AEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTE-----PGKVVTKNGVKIIGYT  308 (356)
T ss_pred             HHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCccccc-----CCeEEEeCCeEEEeec
Confidence               24799999876   332    345667889999999988776554311111     1122344567887764

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.71  E-value=0.1  Score=46.51  Aligned_cols=95  Identities=17%  Similarity=0.133  Sum_probs=66.7

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHHHhCCCceeecCChhh
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      -+||+....+..|....---.|++|+|+|-++.+|.-.+.++...|+.|++.. ++.                      +
T Consensus       137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~  194 (296)
T PRK14188        137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------D  194 (296)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------C
Confidence            45666555565555433235699999999989999999999999999998874 222                      1


Q ss_pred             HHHHHHHHCCCCceEEEECCchhh-HHHHHHhcccCCEEEEEeccc
Q 042784          223 FDAALTKYFPNGIDVYLDNVGGKM-LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +.+.++     .+|+|+-++|.+. +...  .++++..++.+|...
T Consensus       195 l~e~~~-----~ADIVIsavg~~~~v~~~--~lk~GavVIDvGin~  233 (296)
T PRK14188        195 LPAVCR-----RADILVAAVGRPEMVKGD--WIKPGATVIDVGINR  233 (296)
T ss_pred             HHHHHh-----cCCEEEEecCChhhcchh--eecCCCEEEEcCCcc
Confidence            222222     3799999999863 3333  389999999998754

>PLN02244 tocopherol O-methyltransferase

Probab=95.71  E-value=0.089  Score=48.33  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCceEEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      +++++||=.|  .|.|..+..+++..|++|++++.++...+.+++   ..|...-+.... .+..+ + .+..+.||+|+
T Consensus       117 ~~~~~VLDiG--CG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~-~D~~~-~-~~~~~~FD~V~  191 (340)
T PLN02244        117 KRPKRIVDVG--CGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV-ADALN-Q-PFEDGQFDLVW  191 (340)
T ss_pred             CCCCeEEEec--CCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-cCccc-C-CCCCCCccEEE
Confidence            6789998888  456778888898889999999999987776653   223321111111 11111 0 11235799998


Q ss_pred             ECCch-------hhHHHHHHhcccCCEEEEEec
Q 042784          240 DNVGG-------KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       240 d~~g~-------~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .....       ..+.++.+.|+|+|+++....
T Consensus       192 s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        192 SMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             ECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            64332       267888999999999987654

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=95.71  E-value=0.37  Score=42.86  Aligned_cols=55  Identities=27%  Similarity=0.420  Sum_probs=44.9

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC---ChHHHHHHHHHhCCCcee
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG---SDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~---s~~~~~~~~~~~g~~~v~  215 (356)
                      .+.+++|. .+|-+.+|.+|.+...+|+.+|.+++.+.+   |.++.++++ .+|+.-+.
T Consensus        56 ~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~-a~GAevi~  113 (300)
T COG0031          56 RGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLR-ALGAEVIL  113 (300)
T ss_pred             cCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HcCCEEEE
Confidence            57799999 557788899999999999999997776653   678888888 89986444

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.67  E-value=0.99  Score=37.27  Aligned_cols=39  Identities=23%  Similarity=0.181  Sum_probs=32.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK  206 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~  206 (356)
                      +|.|.|+ |.+|...+.++...|.+|...+.+++..+..+
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~   39 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERAR   39 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhh
Confidence            5889997 99999988888888999999999988776654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.069  Score=42.46  Aligned_cols=121  Identities=14%  Similarity=0.088  Sum_probs=74.3

Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCCh-
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSE-  220 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~-  220 (356)
                      +.+|..-..||..+.+ .+.-.|.+|+=.|| |-.|++.+.+|...-. .|..++.+++..+-+++-.......-++.. 
T Consensus         9 ciwpseeala~~~l~~-~n~~rg~~ilelgg-gft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~   86 (201)
T KOG3201|consen    9 CIWPSEEALAWTILRD-PNKIRGRRILELGG-GFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC   86 (201)
T ss_pred             EecccHHHHHHHHHhc-hhHHhHHHHHHhcC-chhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceeh
Confidence            4555555677888864 44445789999998 9999999999987765 999999888776666532111111111110 


Q ss_pred             ---hhHHHHHHHHCCCCceEEE--ECCchh-----hHHHHHHhcccCCEEEEEec
Q 042784          221 ---MSFDAALTKYFPNGIDVYL--DNVGGK-----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       221 ---~~~~~~i~~~~~~~~d~vl--d~~g~~-----~~~~~~~~l~~~G~~v~~g~  265 (356)
                         ..+.....+..+..||+|+  ||+=.+     ........|+|.|+-..++.
T Consensus        87 vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP  141 (201)
T KOG3201|consen   87 VLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSP  141 (201)
T ss_pred             hhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence               1111111112234699998  566543     44556678999999665533

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.65  E-value=0.29  Score=37.17  Aligned_cols=89  Identities=15%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC--CCEEEEE-eCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK--GCKVVGS-TGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~--G~~V~~~-~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|.|.|+ |..|......++..  +.+++++ ++++++.+.+.+.+|.. .  |   .++.+.+.+   ..+|+|+-++.
T Consensus         2 ~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~--~---~~~~~ll~~---~~~D~V~I~tp   71 (120)
T PF01408_consen    2 RVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-V--Y---TDLEELLAD---EDVDAVIIATP   71 (120)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-E--E---SSHHHHHHH---TTESEEEEESS
T ss_pred             EEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-c--h---hHHHHHHHh---hcCCEEEEecC
Confidence            6889997 99998877666555  4577644 55666777666588877 3  3   334444443   36999999998


Q ss_pred             hh-hHHHHHHhcccCCEEEEEecc
Q 042784          244 GK-MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~~-~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      .. +...+..+++.+- -+++..+
T Consensus        72 ~~~h~~~~~~~l~~g~-~v~~EKP   94 (120)
T PF01408_consen   72 PSSHAEIAKKALEAGK-HVLVEKP   94 (120)
T ss_dssp             GGGHHHHHHHHHHTTS-EEEEESS
T ss_pred             CcchHHHHHHHHHcCC-EEEEEcC
Confidence            86 6667777777666 4545443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=95.62  E-value=0.043  Score=50.33  Aligned_cols=77  Identities=13%  Similarity=0.097  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-----HHHHHHH---hCCC---ceeecCChhhHHHHHHHHCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-----VKLLKEE---FGYD---DAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-----~~~~~~~---~g~~---~v~~~~~~~~~~~~i~~~~~  232 (356)
                      ++.+|||+||+|.+|..+++.+...|.+|+++++..++     .+.+.+.   .+..   ...|..+...+.+.+.+   
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---   81 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD---   81 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH---
Confidence            36789999999999999999999999999998865432     2222100   0111   11344443344444443   


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      .++|+|+.+.+
T Consensus        82 ~~~d~Vih~A~   92 (340)
T PLN02653         82 IKPDEVYNLAA   92 (340)
T ss_pred             cCCCEEEECCc
Confidence            24899999876

>PLN02427 UDP-apiose/xylose synthase

Probab=95.62  E-value=0.06  Score=50.38  Aligned_cols=77  Identities=16%  Similarity=0.151  Sum_probs=49.8

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCC------Cce--eecCChhhHHHHHHHHC
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGY------DDA--FNYNSEMSFDAALTKYF  231 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~------~~v--~~~~~~~~~~~~i~~~~  231 (356)
                      +..+..+|||+||+|-+|..+++.+... |.+|++++++.++...+. ..+.      .+.  .|..+...+.+.+    
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~-~~~~~~~~~~~~~~~~Dl~d~~~l~~~~----   84 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL-EPDTVPWSGRIQFHRINIKHDSRLEGLI----   84 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh-ccccccCCCCeEEEEcCCCChHHHHHHh----
Confidence            3344568999999999999998888777 589999987766555443 2221      111  1333323333322    


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                       .++|+||.+++
T Consensus        85 -~~~d~ViHlAa   95 (386)
T PLN02427         85 -KMADLTINLAA   95 (386)
T ss_pred             -hcCCEEEEccc
Confidence             24899999886

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.58  E-value=0.11  Score=46.83  Aligned_cols=94  Identities=5%  Similarity=-0.002  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHH-CCC-EEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKL-KGC-KVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~-~G~-~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      ....+++|.|+ |..|.+.++.+.. .+. +|.+..+++++.+.+.++++... .+..   .++.+.++     ++|+|+
T Consensus       123 ~~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~---~~~~~av~-----~aDiVi  193 (304)
T PRK07340        123 APPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEP---LDGEAIPE-----AVDLVV  193 (304)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEE---CCHHHHhh-----cCCEEE
Confidence            45679999996 9999998887754 676 89999999888777665664321 1112   23444443     489999


Q ss_pred             ECCchh--hHHHHHHhcccCCEEEEEecccc
Q 042784          240 DNVGGK--MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       240 d~~g~~--~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      .|+...  .+..   .++++-++..+|....
T Consensus       194 taT~s~~Pl~~~---~~~~g~hi~~iGs~~p  221 (304)
T PRK07340        194 TATTSRTPVYPE---AARAGRLVVAVGAFTP  221 (304)
T ss_pred             EccCCCCceeCc---cCCCCCEEEecCCCCC
Confidence            998874  4432   2789999999997654

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.56  E-value=0.17  Score=43.19  Aligned_cols=92  Identities=13%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .+.+|||.|| |.++.-=+..+...|++|+++...- +....+. ..|.-..+.    ..+...  .+  .++++||-|+
T Consensus        24 ~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~-~~~~i~~~~----r~~~~~--dl--~g~~LViaAT   93 (223)
T PRK05562         24 NKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK-KYGNLKLIK----GNYDKE--FI--KDKHLIVIAT   93 (223)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH-hCCCEEEEe----CCCChH--Hh--CCCcEEEECC
Confidence            4779999998 9999888888888999988886432 1222222 223321221    111111  11  4689999999


Q ss_pred             chhhHHHHHHhc-ccCCEEEEEec
Q 042784          243 GGKMLEAVLNHV-NVHARIILCGM  265 (356)
Q Consensus       243 g~~~~~~~~~~l-~~~G~~v~~g~  265 (356)
                      +++.++..+... +..+.++.+..
T Consensus        94 dD~~vN~~I~~~a~~~~~lvn~vd  117 (223)
T PRK05562         94 DDEKLNNKIRKHCDRLYKLYIDCS  117 (223)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEcC
Confidence            998666555544 45577776544

>PRK00536 speE spermidine synthase; Provisional

Probab=95.56  E-value=0.05  Score=47.62  Aligned_cols=98  Identities=13%  Similarity=0.037  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEE-E
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYL-D  240 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vl-d  240 (356)
                      ...++|||.|  ||=|.++-+++|+-. +|..++..++=.+.+++-|..- ..++... -.+...+.+...+.+|+|| |
T Consensus        71 ~~pk~VLIiG--GGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR-v~l~~~~~~~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVD--GFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKN-FTHAKQLLDLDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEc--CCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCC-EEEeehhhhccCCcCCEEEEc
Confidence            4458999999  667788889999875 9999998888777777322210 0121111 1111123333335799986 5


Q ss_pred             CCch-hhHHHHHHhcccCCEEEEEe
Q 042784          241 NVGG-KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       241 ~~g~-~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ++-. +.+..+.++|+++|.++.-+
T Consensus       147 s~~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        147 QEPDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CCCChHHHHHHHHhcCCCcEEEECC
Confidence            4443 47788999999999988643

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.53  E-value=0.23  Score=42.44  Aligned_cols=98  Identities=21%  Similarity=0.178  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--------------eecCChhhHHHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--------------FNYNSEMSFDAA  226 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--------------~~~~~~~~~~~~  226 (356)
                      .+.++.+||+.|  -|.|.-++.||. .|++|++++.++.-.+.+.++.+....              ++... .++.+.
T Consensus        34 ~~~~~~rvL~~g--CG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~-~D~~~l  109 (218)
T PRK13255         34 ALPAGSRVLVPL--CGKSLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC-GDFFAL  109 (218)
T ss_pred             CCCCCCeEEEeC--CCChHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE-CcccCC
Confidence            345678999999  467777887875 799999999999988876434443210              00000 111110


Q ss_pred             HHHHCCCCceEEEECCch---------hhHHHHHHhcccCCEEEEE
Q 042784          227 LTKYFPNGIDVYLDNVGG---------KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       227 i~~~~~~~~d~vld~~g~---------~~~~~~~~~l~~~G~~v~~  263 (356)
                       .....+.||.|+|..--         ..+....++|+|+|++.++
T Consensus       110 -~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        110 -TAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             -CcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence             00011358999996531         2578888999999975543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.53  E-value=0.35  Score=40.17  Aligned_cols=98  Identities=18%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ....+.++++||=.|+  |.|..++.+++... .+|++++.+++..+.+++   .++...+--..  .+....    ..+
T Consensus        25 ~~l~~~~~~~vLDiG~--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~--~d~~~~----~~~   96 (187)
T PRK08287         25 SKLELHRAKHLIDVGA--GTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIP--GEAPIE----LPG   96 (187)
T ss_pred             HhcCCCCCCEEEEECC--cCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEe--cCchhh----cCc
Confidence            3455778899988884  45788888887764 599999999987777653   23432221111  121111    124


Q ss_pred             CceEEEECCch----hhHHHHHHhcccCCEEEEE
Q 042784          234 GIDVYLDNVGG----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       234 ~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~  263 (356)
                      .+|+|+.....    ..+..+.+.|+++|+++..
T Consensus        97 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~  130 (187)
T PRK08287         97 KADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLT  130 (187)
T ss_pred             CCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEE
Confidence            69999864321    3677888999999998764

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.52  E-value=0.15  Score=44.99  Aligned_cols=97  Identities=14%  Similarity=0.128  Sum_probs=69.3

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+....+..+....---.|++|+|.|-|.-+|.-...++...|++|+... +.                   + .++
T Consensus       135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtich-s~-------------------T-~~l  193 (282)
T PRK14169        135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAH-SK-------------------T-RNL  193 (282)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEC-CC-------------------C-CCH
Confidence            35566555555565433234699999999999999999999999999888653 11                   1 233


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.+++     +|+|+-++|.+.+ ---+.++++..++.+|...
T Consensus       194 ~~~~~~-----ADIvI~AvG~p~~-i~~~~vk~GavVIDvGin~  231 (282)
T PRK14169        194 KQLTKE-----ADILVVAVGVPHF-IGADAVKPGAVVIDVGISR  231 (282)
T ss_pred             HHHHhh-----CCEEEEccCCcCc-cCHHHcCCCcEEEEeeccc
Confidence            334433     7999999998754 2345889999999998754

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.52  E-value=0.39  Score=41.40  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=28.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGS  198 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s  198 (356)
                      ..+|+|.|. |++|..++..+-..|. +++.++..
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            467999997 9999999999999999 88888743

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.52  E-value=0.14  Score=45.44  Aligned_cols=96  Identities=19%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             cCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHH
Q 042784          145 LGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFD  224 (356)
Q Consensus       145 l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~  224 (356)
                      +||+....+..+....---.|.+|+|.|.|..+|.-...++...|++|+.....                    + .++.
T Consensus       135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------------T-~~l~  193 (287)
T PRK14173        135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------------T-QDLP  193 (287)
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------------C-CCHH
Confidence            455555555555433322469999999999999999999999999988865311                    1 2344


Q ss_pred             HHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          225 AALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +.+++     +|+|+-++|.+.+- --+.++++..++.+|...
T Consensus       194 ~~~~~-----ADIvIsAvGkp~~i-~~~~vk~GavVIDVGin~  230 (287)
T PRK14173        194 AVTRR-----ADVLVVAVGRPHLI-TPEMVRPGAVVVDVGINR  230 (287)
T ss_pred             HHHhh-----CCEEEEecCCcCcc-CHHHcCCCCEEEEccCcc
Confidence            44443     89999999987443 356789999999998754

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=95.51  E-value=0.088  Score=47.04  Aligned_cols=97  Identities=22%  Similarity=0.278  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCceE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      ..+|++||=.|  .|.|.+++..+| +|+ +|++++..+...+.+++   ..|...-+......+       ...+.||+
T Consensus       159 ~~~g~~vLDvG--~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~-------~~~~~~dl  228 (295)
T PF06325_consen  159 VKPGKRVLDVG--CGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED-------LVEGKFDL  228 (295)
T ss_dssp             SSTTSEEEEES---TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC-------TCCS-EEE
T ss_pred             ccCCCEEEEeC--CcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc-------cccccCCE
Confidence            57889998888  456777776666 488 89999988766555542   233322221111011       11257999


Q ss_pred             EEECCchh----hHHHHHHhcccCCEEEEEecccc
Q 042784          238 YLDNVGGK----MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       238 vld~~g~~----~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      |+-+.-.+    ......+.++++|.+++.|....
T Consensus       229 vvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~  263 (295)
T PF06325_consen  229 VVANILADVLLELAPDIASLLKPGGYLILSGILEE  263 (295)
T ss_dssp             EEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred             EEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH
Confidence            99887764    45566678999999999888654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.50  E-value=0.052  Score=41.96  Aligned_cols=81  Identities=17%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .-+|-|+|+ |-+|......++..|.+|..+. ++.++.+.+.+.++...+.+..+      .+     ..+|++|-++.
T Consensus        10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~------~~-----~~aDlv~iavp   77 (127)
T PF10727_consen   10 RLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEE------IL-----RDADLVFIAVP   77 (127)
T ss_dssp             --EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTG------GG-----CC-SEEEE-S-
T ss_pred             ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccccc------cc-----ccCCEEEEEec
Confidence            457999997 9999999999999999988775 45556666664555543333321      11     35899999999


Q ss_pred             hhhHHHHHHhcccC
Q 042784          244 GKMLEAVLNHVNVH  257 (356)
Q Consensus       244 ~~~~~~~~~~l~~~  257 (356)
                      ++.+......|...
T Consensus        78 DdaI~~va~~La~~   91 (127)
T PF10727_consen   78 DDAIAEVAEQLAQY   91 (127)
T ss_dssp             CCHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHh
Confidence            98777777776554

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.50  E-value=0.28  Score=43.02  Aligned_cols=96  Identities=9%  Similarity=0.073  Sum_probs=66.0

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceE
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      ...+.++++||=.|+  |.|..+..+++.. +.+|++++.+++..+.+++.+....++.    .+..+ +  .....+|+
T Consensus        26 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~----~d~~~-~--~~~~~fD~   96 (258)
T PRK01683         26 RVPLENPRYVVDLGC--GPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE----ADIAS-W--QPPQALDL   96 (258)
T ss_pred             hCCCcCCCEEEEEcc--cCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE----Cchhc-c--CCCCCccE
Confidence            445678899999984  4677788888876 4699999999998888874432222222    12211 1  11247999


Q ss_pred             EEECCch-------hhHHHHHHhcccCCEEEEE
Q 042784          238 YLDNVGG-------KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       238 vld~~g~-------~~~~~~~~~l~~~G~~v~~  263 (356)
                      |+....-       ..+..+.+.|+++|.++..
T Consensus        97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            9865442       2688889999999998875

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=95.50  E-value=0.072  Score=46.02  Aligned_cols=102  Identities=20%  Similarity=0.280  Sum_probs=62.9

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHh---CCCce--eecCChhhHHHHHHHHC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEEF---GYDDA--FNYNSEMSFDAALTKYF  231 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~~---g~~~v--~~~~~~~~~~~~i~~~~  231 (356)
                      ....++|++||=.+  .|.|..+..+++..+  .+|++++.|++-++.+++..   +...+  +..+. .++.     +.
T Consensus        42 ~~~~~~g~~vLDv~--~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-~~lp-----~~  113 (233)
T PF01209_consen   42 LLGLRPGDRVLDVA--CGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA-EDLP-----FP  113 (233)
T ss_dssp             HHT--S--EEEEET---TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT-TB-------S-
T ss_pred             ccCCCCCCEEEEeC--CChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-HHhc-----CC
Confidence            34578899998887  567888889999876  49999999999888887532   22211  11110 1110     11


Q ss_pred             CCCceEEEECCch-------hhHHHHHHhcccCCEEEEEecccc
Q 042784          232 PNGIDVYLDNVGG-------KMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       232 ~~~~d~vld~~g~-------~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      .+.||+|..+.|-       ..+.+..+.|+|+|+++.+....+
T Consensus       114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p  157 (233)
T PF01209_consen  114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP  157 (233)
T ss_dssp             TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred             CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence            2469999987774       278899999999999988776543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=95.48  E-value=0.086  Score=48.44  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD  200 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~  200 (356)
                      ++|||+||+|.+|..+++.+...|.+|++++++.+
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   35 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSS   35 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCc
Confidence            47999999999999999999999999999987653

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.48  E-value=0.067  Score=48.55  Aligned_cols=38  Identities=21%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN  201 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~  201 (356)
                      .+.+|||+||+|-+|..++..+...|.+|++++++.++
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~   40 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND   40 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence            36789999999999999999998899999988876554

>PRK06924 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.11  Score=45.30  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHH
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLK  206 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~  206 (356)
                      ++++|+|++|++|...++.+...|++|+++++++ ++.+.+.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~   43 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLA   43 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHH
Confidence            4799999999999999988888899999999876 4444443

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.47  E-value=0.12  Score=45.30  Aligned_cols=79  Identities=13%  Similarity=0.112  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCC-----------hHHH----HHHHHHhCCCc---eeecCChhhH
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGS-----------DDNV----KLLKEEFGYDD---AFNYNSEMSF  223 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s-----------~~~~----~~~~~~~g~~~---v~~~~~~~~~  223 (356)
                      .|.+++|+|++  +++|..++..+...|++|++++++           .++.    +.++ +.|...   ..|..+..++
T Consensus         5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~D~~~~~~i   83 (256)
T PRK12859          5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELL-KNGVKVSSMELDLTQNDAP   83 (256)
T ss_pred             CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHH-hcCCeEEEEEcCCCCHHHH
Confidence            47899999997  489999999888999999887532           1111    1222 334421   1244443444


Q ss_pred             HHHHHHHC--CCCceEEEECCc
Q 042784          224 DAALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       224 ~~~i~~~~--~~~~d~vld~~g  243 (356)
                      .+.+.++.  -+.+|++|.+.|
T Consensus        84 ~~~~~~~~~~~g~id~li~~ag  105 (256)
T PRK12859         84 KELLNKVTEQLGYPHILVNNAA  105 (256)
T ss_pred             HHHHHHHHHHcCCCcEEEECCC
Confidence            44443332  135899999876

>PLN02214 cinnamoyl-CoA reductase

Probab=95.47  E-value=0.092  Score=48.28  Aligned_cols=76  Identities=21%  Similarity=0.306  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHH--HHHHHhC-C-C--cee--ecCChhhHHHHHHHHCCCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK--LLKEEFG-Y-D--DAF--NYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~--~~~~~~g-~-~--~v~--~~~~~~~~~~~i~~~~~~~  234 (356)
                      ..+.+|||+||+|.+|...+..+...|.+|++++++.++..  .+. .+. . .  ..+  |..+..++.+.+     .+
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~   81 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLR-ELEGGKERLILCKADLQDYEALKAAI-----DG   81 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHH-HhhCCCCcEEEEecCcCChHHHHHHH-----hc
Confidence            35779999999999999999999889999999988765422  122 221 1 1  112  333323333333     25


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|+||.+.+.
T Consensus        82 ~d~Vih~A~~   91 (342)
T PLN02214         82 CDGVFHTASP   91 (342)
T ss_pred             CCEEEEecCC
Confidence            8999998863

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.47  E-value=0.16  Score=45.77  Aligned_cols=86  Identities=23%  Similarity=0.187  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|- |.+|...+++++.+|++|++.+++...       .+....  +   .++.+.+.+     .|+|+.+..
T Consensus       121 ~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~~~~-------~~~~~~--~---~~l~ell~~-----aDiv~~~lp  182 (303)
T PRK06436        121 YNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRSYVN-------DGISSI--Y---MEPEDIMKK-----SDFVLISLP  182 (303)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcc-------cCcccc--c---CCHHHHHhh-----CCEEEECCC
Confidence            5899999996 999999999999999999999875321       122211  1   234444433     799998876


Q ss_pred             hh-----h-HHHHHHhcccCCEEEEEeccc
Q 042784          244 GK-----M-LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~~-----~-~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ..     . -...+..++++..++.++...
T Consensus       183 ~t~~T~~li~~~~l~~mk~ga~lIN~sRG~  212 (303)
T PRK06436        183 LTDETRGMINSKMLSLFRKGLAIINVARAD  212 (303)
T ss_pred             CCchhhcCcCHHHHhcCCCCeEEEECCCcc
Confidence            42     1 246778899999888876643

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.46  E-value=0.11  Score=47.36  Aligned_cols=93  Identities=14%  Similarity=0.138  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHH-HCCC-EEEEEeCChHHHHHHHHHh----CCCceeecCChhhHHHHHHHHCCCCce
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAK-LKGC-KVVGSTGSDDNVKLLKEEF----GYDDAFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~-~~G~-~V~~~~~s~~~~~~~~~~~----g~~~v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      +...+++|.|+ |+.+.+.+..+. ..++ +|.+..++.++.+.+.+++    |.. +..+   .++.+.++     ++|
T Consensus       127 ~~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~---~~~~~av~-----~aD  196 (326)
T TIGR02992       127 EDSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAA---TDPRAAMS-----GAD  196 (326)
T ss_pred             CCCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEe---CCHHHHhc-----cCC
Confidence            44578999996 999988777665 5786 8999999988877665444    432 2222   23444443     489


Q ss_pred             EEEECCchh--hHHHHHHhcccCCEEEEEeccc
Q 042784          237 VYLDNVGGK--MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       237 ~vld~~g~~--~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +|+.|++..  .+.  ...++++-++..+|...
T Consensus       197 iVvtaT~s~~p~i~--~~~l~~g~~i~~vg~~~  227 (326)
T TIGR02992       197 IIVTTTPSETPILH--AEWLEPGQHVTAMGSDA  227 (326)
T ss_pred             EEEEecCCCCcEec--HHHcCCCcEEEeeCCCC
Confidence            999998864  332  23578888888787654

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.46  E-value=0.13  Score=45.43  Aligned_cols=96  Identities=16%  Similarity=0.084  Sum_probs=68.3

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+....+..+....---.|.+|+|.|.+.-+|.-...++...|++|++.....                     .++
T Consensus       143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------------------~~l  201 (287)
T PRK14176        143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------------------DDL  201 (287)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------------------CCH
Confidence            45666555665565332224799999999988899999999999999987765110                     233


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      .+.++     .+|+++-++|.+.+- --..++++..++.+|..
T Consensus       202 ~~~~~-----~ADIvv~AvG~p~~i-~~~~vk~gavVIDvGin  238 (287)
T PRK14176        202 KKYTL-----DADILVVATGVKHLI-KADMVKEGAVIFDVGIT  238 (287)
T ss_pred             HHHHh-----hCCEEEEccCCcccc-CHHHcCCCcEEEEeccc
Confidence            33343     389999999987432 34588999999999874

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.46  E-value=0.34  Score=42.45  Aligned_cols=95  Identities=18%  Similarity=0.125  Sum_probs=66.2

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCce
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      ......++++||=.|+  |.|..+..+++.. +.+|++++.++...+.++ +.+.. ++.    .+..+ +.  ..+.||
T Consensus        23 ~~l~~~~~~~vLDlGc--G~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-~~~~~-~~~----~d~~~-~~--~~~~fD   91 (255)
T PRK14103         23 ARVGAERARRVVDLGC--GPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-ERGVD-ART----GDVRD-WK--PKPDTD   91 (255)
T ss_pred             HhCCCCCCCEEEEEcC--CCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-hcCCc-EEE----cChhh-CC--CCCCce
Confidence            3455678899999984  4477788888775 679999999999888887 54443 222    12211 11  124799


Q ss_pred             EEEECCch-------hhHHHHHHhcccCCEEEEE
Q 042784          237 VYLDNVGG-------KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       237 ~vld~~g~-------~~~~~~~~~l~~~G~~v~~  263 (356)
                      +|+....-       ..+..+.+.|+|+|.++..
T Consensus        92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         92 VVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             EEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            99975531       2677888999999998864

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.45  E-value=0.12  Score=45.46  Aligned_cols=96  Identities=20%  Similarity=0.123  Sum_probs=68.8

Q ss_pred             cCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHH
Q 042784          145 LGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFD  224 (356)
Q Consensus       145 l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~  224 (356)
                      +||+....+..+....---.|++|+|.|-+.-+|.-...++...|++|+.....                    + .++.
T Consensus       138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------------T-~~l~  196 (278)
T PRK14172        138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------------T-KNLK  196 (278)
T ss_pred             cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------------C-CCHH
Confidence            456555555556543323469999999999999999999999999988765411                    1 2333


Q ss_pred             HHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          225 AALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +.+++     +|+|+-++|.+.+ ---..++++..++.+|...
T Consensus       197 ~~~~~-----ADIvIsAvGkp~~-i~~~~ik~gavVIDvGin~  233 (278)
T PRK14172        197 EVCKK-----ADILVVAIGRPKF-IDEEYVKEGAIVIDVGTSS  233 (278)
T ss_pred             HHHhh-----CCEEEEcCCCcCc-cCHHHcCCCcEEEEeeccc
Confidence            33433     8999999998754 2345699999999998754

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=95.42  E-value=0.43  Score=42.43  Aligned_cols=106  Identities=16%  Similarity=0.207  Sum_probs=71.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC----CceeecCChhh---HHHHHHHHC-CCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY----DDAFNYNSEMS---FDAALTKYF-PNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~----~~v~~~~~~~~---~~~~i~~~~-~~~  234 (356)
                      -++..|+|+|.-+|.|...+.-+-..|++|++.+..++..+.++.+...    ....|-.++++   ..+.+++.. .++
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~g  106 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDG  106 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccccc
Confidence            4567799999999999998888889999999999888777776644311    12344444333   333444544 347


Q ss_pred             ceEEEECCchh------------hH---------------HHHHHhc-ccCCEEEEEecccc
Q 042784          235 IDVYLDNVGGK------------ML---------------EAVLNHV-NVHARIILCGMISQ  268 (356)
Q Consensus       235 ~d~vld~~g~~------------~~---------------~~~~~~l-~~~G~~v~~g~~~~  268 (356)
                      .=.+++++|-.            .+               +..+-++ +..|++|.++...+
T Consensus       107 LwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G  168 (322)
T KOG1610|consen  107 LWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG  168 (322)
T ss_pred             ceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence            88888988810            11               1222334 45699999988776

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.41  E-value=0.091  Score=46.31  Aligned_cols=101  Identities=17%  Similarity=0.138  Sum_probs=66.4

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHhCC-----CceeecCChhhHHHHHHHHC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEEFGY-----DDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~~g~-----~~v~~~~~~~~~~~~i~~~~  231 (356)
                      ...++++++||=.|+  |.|..+..+++..|  .+|++++.+++..+.+++....     ..-+.... .+    +.++.
T Consensus        68 ~~~~~~~~~VLDlGc--GtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~-~d----~~~lp  140 (261)
T PLN02233         68 WSGAKMGDRVLDLCC--GSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIE-GD----ATDLP  140 (261)
T ss_pred             HhCCCCCCEEEEECC--cCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEE-cc----cccCC
Confidence            456788999999985  44667778888765  4999999999988888643220     00111110 11    11221


Q ss_pred             --CCCceEEEECCch-------hhHHHHHHhcccCCEEEEEecc
Q 042784          232 --PNGIDVYLDNVGG-------KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       232 --~~~~d~vld~~g~-------~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                        .+.||.|+-+.+-       ..+.++.+.|+|+|+++.+...
T Consensus       141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence              2469999865431       2688999999999999877554

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.40  E-value=0.14  Score=41.51  Aligned_cols=89  Identities=22%  Similarity=0.156  Sum_probs=58.4

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      .+|.+.|. |.+|...+.-+...|.+|++.++++++.+.+. +.|+. ..     .+..+.+.+     +|+||-|+.+.
T Consensus         2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-~~g~~-~~-----~s~~e~~~~-----~dvvi~~v~~~   68 (163)
T PF03446_consen    2 MKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-EAGAE-VA-----DSPAEAAEQ-----ADVVILCVPDD   68 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-HTTEE-EE-----SSHHHHHHH-----BSEEEE-SSSH
T ss_pred             CEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-Hhhhh-hh-----hhhhhHhhc-----ccceEeecccc
Confidence            36889996 99999988888889999999999999999888 55643 22     223333433     69999988763


Q ss_pred             -hHHH------HHHhcccCCEEEEEeccc
Q 042784          246 -MLEA------VLNHVNVHARIILCGMIS  267 (356)
Q Consensus       246 -~~~~------~~~~l~~~G~~v~~g~~~  267 (356)
                       ....      .+..++++..++.++...
T Consensus        69 ~~v~~v~~~~~i~~~l~~g~iiid~sT~~   97 (163)
T PF03446_consen   69 DAVEAVLFGENILAGLRPGKIIIDMSTIS   97 (163)
T ss_dssp             HHHHHHHHCTTHGGGS-TTEEEEE-SS--
T ss_pred             hhhhhhhhhhHHhhccccceEEEecCCcc
Confidence             3333      344566667777766544

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.38  E-value=0.51  Score=43.13  Aligned_cols=86  Identities=15%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++..|.+|++.+++++......         .+.  .++.+.+.     ..|+|+-++.
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~---------~~~--~~l~ell~-----~aDiVil~lP  207 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDLDFL---------TYK--DSVKEAIK-----DADIISLHVP  207 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhhhhh---------hcc--CCHHHHHh-----cCCEEEEeCC
Confidence            5779999996 99999999999999999999997765422111         011  23444343     3799998876


Q ss_pred             hh------hHHHHHHhcccCCEEEEEecc
Q 042784          244 GK------MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~~------~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ..      .....+..++++..+|.++..
T Consensus       208 ~t~~t~~li~~~~l~~mk~gavlIN~aRG  236 (330)
T PRK12480        208 ANKESYHLFDKAMFDHVKKGAILVNAARG  236 (330)
T ss_pred             CcHHHHHHHhHHHHhcCCCCcEEEEcCCc
Confidence            42      234566788998888877653

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.37  E-value=0.18  Score=44.67  Aligned_cols=97  Identities=21%  Similarity=0.154  Sum_probs=69.2

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+....+..+....---.|.+|+|.|.|.-+|.-...++...|++|+... +.                   + .++
T Consensus       137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~ch-s~-------------------t-~~l  195 (284)
T PRK14190        137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCH-SK-------------------T-KNL  195 (284)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe-CC-------------------c-hhH
Confidence            35666555555565433225799999999999999999999999999988653 21                   1 234


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.+++     +|+|+-++|.+.+ ---+.++++..++.+|...
T Consensus       196 ~~~~~~-----ADIvI~AvG~p~~-i~~~~ik~gavVIDvGi~~  233 (284)
T PRK14190        196 AELTKQ-----ADILIVAVGKPKL-ITADMVKEGAVVIDVGVNR  233 (284)
T ss_pred             HHHHHh-----CCEEEEecCCCCc-CCHHHcCCCCEEEEeeccc
Confidence            444443     8999999998754 2245679999999998754

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=95.37  E-value=0.11  Score=44.77  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=48.5

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHH---HhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLKE---EFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~~---~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      +||+|++|++|..+++.+...|++|++++++. ++.+...+   ..|..   ...|..+...+.+.+.++.  -+++|.|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL   80 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            58999999999999988888899999988764 33222211   33432   1234444333333333321  1468999


Q ss_pred             EECCch
Q 042784          239 LDNVGG  244 (356)
Q Consensus       239 ld~~g~  244 (356)
                      +.+.|.
T Consensus        81 i~~ag~   86 (239)
T TIGR01830        81 VNNAGI   86 (239)
T ss_pred             EECCCC
Confidence            998874

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.35  E-value=0.087  Score=44.21  Aligned_cols=99  Identities=9%  Similarity=0.102  Sum_probs=60.9

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ......++.+||-.|+  |.|..+..+++ .|.+|++++.++.-.+.+++   ..+..  +.... .+...  ..+ .+.
T Consensus        24 ~~~~~~~~~~vLDiGc--G~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~-~d~~~--~~~-~~~   94 (195)
T TIGR00477        24 EAVKTVAPCKTLDLGC--GQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENLP--LRTDA-YDINA--AAL-NED   94 (195)
T ss_pred             HHhccCCCCcEEEeCC--CCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEe-ccchh--ccc-cCC
Confidence            3344455678999884  66777888877 48899999999887766542   22322  11110 11110  011 246


Q ss_pred             ceEEEECC-----ch----hhHHHHHHhcccCCEEEEEec
Q 042784          235 IDVYLDNV-----GG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       235 ~d~vld~~-----g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +|+|+.+.     ..    ..+..+.+.|+|+|.++.+..
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~  134 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA  134 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence            99998642     21    267788889999999665543

Part of a tellurite-reducing operon tehA and tehB

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.34  E-value=0.16  Score=44.20  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH--HHHHHHHhC----CCce---eecCC-hhhHHHHHHHHC--
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN--VKLLKEEFG----YDDA---FNYNS-EMSFDAALTKYF--  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~--~~~~~~~~g----~~~v---~~~~~-~~~~~~~i~~~~--  231 (356)
                      .+.++||+|+++++|.+++..+...|++|+++.+..+.  .+.+.+...    ....   .|..+ ..+....+.++.  
T Consensus         4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~~   83 (251)
T COG1028           4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEEE   83 (251)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999888887999998777766543  333332222    1111   34443 333333333322  


Q ss_pred             CCCceEEEECCch
Q 042784          232 PNGIDVYLDNVGG  244 (356)
Q Consensus       232 ~~~~d~vld~~g~  244 (356)
                      -+++|+++.+.|.
T Consensus        84 ~g~id~lvnnAg~   96 (251)
T COG1028          84 FGRIDILVNNAGI   96 (251)
T ss_pred             cCCCCEEEECCCC
Confidence            2459999998873

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=95.34  E-value=0.11  Score=44.89  Aligned_cols=76  Identities=16%  Similarity=0.173  Sum_probs=47.5

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHHH---hCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLKEE---FGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~~~---~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      ++|+|++|++|..+++.+...|++|++++++. ++.+.+.++   .+..   ...|..+..++.+.+.+..  .+.+|.+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l   80 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV   80 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            58999999999999999989999998887553 333332222   2322   1234444334433333321  2468999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        81 i~~ag   85 (239)
T TIGR01831        81 VLNAG   85 (239)
T ss_pred             EECCC
Confidence            88876

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.34  E-value=0.19  Score=45.66  Aligned_cols=87  Identities=21%  Similarity=0.133  Sum_probs=58.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      |+||-|+|. |.+|...++.++.+|.+|++.++ +.+....   ..+..   -.   .++.+-+.+     .|++.-.+.
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~~~~~~~~~---~~~~~---~~---~~Ld~lL~~-----sDiv~lh~P  206 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDPYSPRERAG---VDGVV---GV---DSLDELLAE-----ADILTLHLP  206 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEECCCCchhhhc---cccce---ec---ccHHHHHhh-----CCEEEEcCC
Confidence            789999997 99999999999999999999997 2222221   11221   11   335555544     788877655


Q ss_pred             h--h----hHHHHHHhcccCCEEEEEecc
Q 042784          244 G--K----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~--~----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      -  +    .-...+..|+++..++.++..
T Consensus       207 lT~eT~g~i~~~~~a~MK~gailIN~aRG  235 (324)
T COG0111         207 LTPETRGLINAEELAKMKPGAILINAARG  235 (324)
T ss_pred             CCcchhcccCHHHHhhCCCCeEEEECCCc
Confidence            3  1    224667788888877776553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
4hfj_A	351	X-ray Crystal Structure Of A Double Bond Reductase		5e-61
2j3h_A	345	Crystal Structure Of Arabidopsis Thaliana Double Bo		1e-58
4b7c_A	336	Crystal Structure Of Hypothetical Protein Pa1648 Fr		2e-51
2zb4_A	357	Crystal Structure Of Human 15-Ketoprostaglandin Del		2e-41
2w4q_A	357	Crystal Structure Of Human Zinc-Binding Alcohol Deh		2e-41
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		6e-40
1vj1_A	363	Crystal Structure Of Putative Nadph-Dependent Oxido		8e-40
2zb3_A	353	Crystal Structure Of Mouse 15-Ketoprostaglandin Del		1e-39
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		2e-36
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		2e-36
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		8e-20
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		8e-20
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		9e-20
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		5e-11
2vz8_A	2512	Crystal Structure Of Mammalian Fatty Acid Synthase		5e-08
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		5e-07
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		6e-07
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		1e-06
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		2e-06
1pqw_A	198	Putative Enoyl Reductase Domain Of Polyketide Synth		2e-06
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		3e-06
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		1e-05
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		1e-04
3slk_A	795	Structure Of Ketoreductase And Enoylreductase Didom		3e-04
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		6e-04

>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum Length = 351

Iteration: 1
 Score =  231 bits (589), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 194/346 (56%), Gaps = 9/346 (2%)
Query: 9   ETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATM 68
           E V +K+  +  Y + G P    +++++ ++ L +     + V V+ L++S DPY+R+ M
Sbjct: 3   EEVSNKQVILKNYVT-GYPKESDMEIKNVTIKLKVPE-GSNDVVVKNLYLSCDPYMRSRM 60
Query: 69  TGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL-PCDLLT 127
               +G Y   F     I  +G+A+V+ S D K+  GD+V        EYS++ P   L 
Sbjct: 61  RKI-EGSYVESFAPGSPITGYGVAKVLESGDPKFQKGDLVW-GMTGWEEYSIITPTQTLF 118
Query: 128 RKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKL 187
           +  D    +P   Y   LG+PG  A+ G   +  PK G  VFVSAA+G VG   GQ AK+
Sbjct: 119 KIHD--KDVPLSYYTGILGMPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKM 176
Query: 188 KGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKML 247
            GC VVGS GS + V LLK +FG+D+AFNY  E    AAL +YFP+GID+Y +NVGGKML
Sbjct: 177 LGCYVVGSAGSKEKVDLLKSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKML 236
Query: 248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADF 307
           +AVL ++ ++ RI +CGMISQYN   TE  GV NL  +I K ++MEGF++  +   +  +
Sbjct: 237 DAVLVNMKLYGRIAVCGMISQYNLEQTE--GVHNLFCLITKRIRMEGFLVFDYYHLYPKY 294
Query: 308 TVEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
              +   IK GK+     + +G+              NIGK V+ V
Sbjct: 295 LEMVIPQIKAGKVVYVEDVAHGLESAPTALVGLFSGRNIGKQVVMV 340

>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond Reductase (At5g16970)-Apo Form Length = 345

Iteration: 1
 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 194/353 (54%), Gaps = 21/353 (5%)
Query: 10  TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPD--HHVAVETLWISIDPYLRAT 67
           T  +K+  +  Y S G PT       + +V L    +P+  + V V+ L++S DPY+R  
Sbjct: 2   TATNKQVILKDYVS-GFPTESDFDFTTTTVEL---RVPEGTNSVLVKNLYLSCDPYMRIR 57
Query: 68  M------TGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL 121
           M      T      Y P     Q I  +G++R+I S    Y  GD+ L   +   EYS++
Sbjct: 58  MGKPDPSTAALAQAYTP----GQPIQGYGVSRIIESGHPDYKKGDL-LWGIVAWEEYSVI 112
Query: 122 -PCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMF 180
            P      K+   + +P   Y   LG+PG  A+ G   +  PK G  V+VSAA+G VG  
Sbjct: 113 TPMTHAHFKIQ-HTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQL 171
Query: 181 AGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLD 240
            GQLAK+ GC VVGS GS + V LLK +FG+DDAFNY  E    AAL + FPNGID+Y +
Sbjct: 172 VGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFE 231
Query: 241 NVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH 300
           NVGGKML+AVL ++N+H RI +CGMISQYN     ++GV NL N+I K  +++GF++   
Sbjct: 232 NVGGKMLDAVLVNMNMHGRIAVCGMISQYN--LENQEGVHNLSNIIYKRNRIQGFVVSDF 289
Query: 301 MDRFADFTVEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
            D+++ F   +  +I+EGKI     +  G+              N+GK V+ V
Sbjct: 290 YDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVV 342

>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From Pseudomonas Aeruginosa. Length = 336

Iteration: 1
 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 182/345 (52%), Gaps = 13/345 (3%)
Query: 10  TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMT 69
           T +    Y  A    G+P  D        V   +    +  + V+  ++S+DP +R  M 
Sbjct: 4   TSQINRQYQLAQRPSGLPGRDTFSF----VETPLGEPAEGQILVKNEYLSLDPAMRGWMN 59
Query: 70  GTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSL-LPCDLLTR 128
                 Y P   + +V+ A G+ +V+ SK   +  GD V  A L V +Y +  P      
Sbjct: 60  DARS--YIPPVGIGEVMRALGVGKVLVSKHPGFQAGDYVNGA-LGVQDYFIGEPKGFY-- 114
Query: 129 KLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK 188
           K+DP S  P P YLS+LG+ G  A+  +  +GQPK+G  V +S AAG VG  AGQ+A+LK
Sbjct: 115 KVDP-SRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLK 173
Query: 189 GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLE 248
           GC+VVG  G  +  + L EE G+D A +Y +E    A L +  P GIDV+ DNVGG++L+
Sbjct: 174 GCRVVGIAGGAEKCRFLVEELGFDGAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILD 232
Query: 249 AVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFT 308
            VL  +   ARI+LCG ISQYN     R G  N L+++    +MEG ++  +  RF +  
Sbjct: 233 TVLTRIAFKARIVLCGAISQYNNKEAVR-GPANYLSLLVNRARMEGMVVMDYAQRFPEGL 291
Query: 309 VEMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
            EM +++ EGK++S+  I  G+              N GK+V++V
Sbjct: 292 KEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV 336

>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadp And 15-Keto-Pge2 Length = 357

Iteration: 1
 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 173/341 (50%), Gaps = 11/341 (3%)
Query: 19  SAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFP 78
           S    +G P +++ ++    +    D+I +  V V TL++S+DPY+R  M       Y  
Sbjct: 16  SRPGKNGNPVAENFRMEEVYLP---DNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYIT 72
Query: 79  QFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPF 138
            + L+QV+   GI  +  SK +  + GD V   + P     +L  + L  K+DP      
Sbjct: 73  PWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSL-EKVDPQLVDGH 131
Query: 139 PDY-LSSLGIPGFAAWVGIEVLGQPKSGSN--VFVSAAAGGVGMFAGQLAKLKGC-KVVG 194
             Y L ++G+PG  + +GI+  G   +GSN  + VS AAG  G  AGQ+    GC +VVG
Sbjct: 132 LSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVG 191
Query: 195 STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHV 254
             G+ +   LL  E G+D A NY  + +    L +  P G+DVY DNVGG + + V++ +
Sbjct: 192 ICGTHEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQM 250
Query: 255 NVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE--VKMEGFMIGSHMDRFADFTVEME 312
           N ++ IILCG ISQYNK       +   +  I KE  +  E F++ ++ D+F    +++ 
Sbjct: 251 NENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLS 310
Query: 313 SYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
            + KEGK++ K  +  G+              NIGK ++ +
Sbjct: 311 QWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCI 351

>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And 18beta-Glycyrrhetinic Acid Length = 357

Iteration: 1
 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 173/341 (50%), Gaps = 11/341 (3%)
Query: 19  SAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFP 78
           S    +G P +++ ++    +    D+I +  V V TL++S+DPY+R  M       Y  
Sbjct: 11  SRPGKNGNPVAENFRMEEVYLP---DNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYIT 67
Query: 79  QFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPF 138
            + L+QV+   GI  +  SK +  + GD V   + P     +L  + L  K+DP      
Sbjct: 68  PWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSL-EKVDPQLVDGH 126
Query: 139 PDY-LSSLGIPGFAAWVGIEVLGQPKSGSN--VFVSAAAGGVGMFAGQLAKLKGC-KVVG 194
             Y L ++G+PG  + +GI+  G   +GSN  + VS AAG  G  AGQ+    GC +VVG
Sbjct: 127 LSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVG 186
Query: 195 STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHV 254
             G+ +   LL  E G+D A NY  + +    L +  P G+DVY DNVGG + + V++ +
Sbjct: 187 ICGTHEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQM 245
Query: 255 NVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE--VKMEGFMIGSHMDRFADFTVEME 312
           N ++ IILCG ISQYNK       +   +  I KE  +  E F++ ++ D+F    +++ 
Sbjct: 246 NENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLS 305
Query: 313 SYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
            + KEGK++ K  +  G+              NIGK ++ +
Sbjct: 306 QWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCI 346

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 174/342 (50%), Gaps = 17/342 (4%)
Query: 11  VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG 70
           V++K W +  +   G PT    +L++    + +  + +  V +E L++S+DPY+R     
Sbjct: 6   VKAKSWTLKKHF-QGKPTQSDFELKT----VELPPLKNGEVLLEALFLSVDPYMRIASKR 60
Query: 71  TNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKL 130
             +G          V++   +ARV+ SK+S +  G IVL        +      L     
Sbjct: 61  LKEG---------AVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLT 111
Query: 131 DPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC 190
           +    +P    L ++G+PG  A+ G+  +   K G  V VSAAAG VG   GQ+AKLKGC
Sbjct: 112 EWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC 171
Query: 191 KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAV 250
           KVVG+ GSD+ +  LK + G+D AFNY +  S + AL K  P+G D Y DNVGG+ L  V
Sbjct: 172 KVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTV 230
Query: 251 LNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTV- 309
           L+ +    +I +CG IS YN++     G  +  ++I K++++EGF++        +  + 
Sbjct: 231 LSQMKDFGKIAICGAISVYNRMDQLPPG-PSPESIIYKQLRIEGFIVYRWQGDVREKALR 289
Query: 310 EMESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVI 351
           ++  ++ EGKI+    +  G               N+GK V+
Sbjct: 290 DLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAVV 331

>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent Oxidoreductase From Mus Musculus At 2.10 A Resolution Length = 363

Iteration: 1
 Score =  160 bits (406), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 169/338 (50%), Gaps = 11/338 (3%)
Query: 22  ASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFN 81
             +G P +++ ++   S+   +D++ +  V V TL++S+DPY R          Y   + 
Sbjct: 25  GKNGNPVAENFRVEEFSL---LDALNEGQVQVRTLYLSVDPYXRCKXNEDTGTDYLAPWQ 81
Query: 82  LNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDY 141
           L QV    GI  V  SK  K + GD V   + P    ++L  + L  K+DP        Y
Sbjct: 82  LAQVADGGGIGIVEESKHQKLAKGDFVTSFYWPWQTKAILDGNGL-EKVDPQLVDGHLSY 140
Query: 142 -LSSLGIPGFAAWVGIEVLGQPKSGSN--VFVSAAAGGVGMFAGQLAKLKGC-KVVGSTG 197
            L ++G PG  + +G++  G   +GSN    VS AAG  G  AGQ+  L GC +VVG  G
Sbjct: 141 FLGAIGXPGLTSLIGVQEKGHISAGSNQTXVVSGAAGACGSLAGQIGHLLGCSRVVGICG 200
Query: 198 SDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVH 257
           + +    L  E G+D A NY +  +    L +  P G+DVY DNVGG +   V++  N +
Sbjct: 201 TQEKCLFLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNTVISQXNEN 259
Query: 258 ARIILCGMISQYNKVWTERDGVRNLLNMIGKE--VKMEGFMIGSHMDRFADFTVEMESYI 315
           + IILCG ISQYNK       +   +  I KE  +  E F + ++ D+F    +++  + 
Sbjct: 260 SHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWF 319
Query: 316 KEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQV 353
           KEGK++ K  +  G+              N+GK ++ +
Sbjct: 320 KEGKLKVKETVAKGLENXGVAFQSXXTGGNVGKQIVCI 357

>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadph Length = 353

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 164/319 (51%), Gaps = 14/319 (4%)
Query: 44  DSIPDHHVAVETLWISIDPYLRATM---TGTNDGLYFPQFNLNQVILAFGIARVIRSKDS 100
           D++ +  V V TL++S+DPY+R  M   TGT+   Y   + L QV    GI  V  SK  
Sbjct: 34  DALNEGQVQVRTLYLSVDPYMRCKMNEDTGTD---YLAPWQLAQVADGGGIGVVEESKHQ 90
Query: 101 KYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDY-LSSLGIPGFAAWVGIEVL 159
           K + GD V   + P    ++L  + L  K+DP        Y L ++G+PG  + +G++  
Sbjct: 91  KLTKGDFVTSFYWPWQTKAILDGNGL-EKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEK 149
Query: 160 GQPKSGSN--VFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFN 216
           G   +GSN  + VS AAG  G  AGQ+  L GC +VVG  G+ +    L  E G+D A N
Sbjct: 150 GHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVN 209
Query: 217 YNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTER 276
           Y +  +    L +  P G+DVY DNVGG +  AV++ +N ++ IILCG ISQY+      
Sbjct: 210 YKTG-NVAEQLREACPGGVDVYFDNVGGDISNAVISQMNENSHIILCGQISQYSNDVPYP 268
Query: 277 DGVRNLLNMIGKE--VKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVXXXX 334
             +   +  I KE  +  E F + ++ D+F    +++  + KEGK++ K  +  G+    
Sbjct: 269 PPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEGKLKVKETMAKGLENMG 328
Query: 335 XXXXXXXXXXNIGKVVIQV 353
                     N+GK ++ +
Sbjct: 329 VAFQSMMTGGNVGKQIVCI 347

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 165/341 (48%), Gaps = 17/341 (4%)
Query: 13  SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTN 72
           +K W +  +   G PT+   +L+++     +  + +  V +E L++++DPY+R       
Sbjct: 3   TKTWTLKKHFV-GYPTNSDFELKTSE----LPPLKNGEVLLEALFLTVDPYMRVAAKRLK 57
Query: 73  DGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDP 132
           +G           ++   +A+V+ SK+     G IVL +            DL     + 
Sbjct: 58  EG---------DTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEW 108
Query: 133 ASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKV 192
              IP    L ++G+PG  A+ G+  +   K G  V V+AAAG VG   GQ+AKLKGCKV
Sbjct: 109 PDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKV 168
Query: 193 VGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLN 252
           VG+ GSD+ V  L ++ G+D  FNY +  S +  L K  P+G D Y DNVGG+    V+ 
Sbjct: 169 VGAVGSDEKVAYL-QKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIG 227
Query: 253 HVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS-HMDRFADFTVEM 311
            +    RI +CG IS YN+      G    + +I +E++ME F++     D       ++
Sbjct: 228 QMKKFGRIAICGAISTYNRTGPLPPGPPPEI-VIYQELRMEAFVVYRWQGDARQKALKDL 286
Query: 312 ESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQ 352
             ++ EGKI+ K  I  G               N+GK +++
Sbjct: 287 LKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVK 327

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 165/341 (48%), Gaps = 17/341 (4%)
Query: 13  SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTN 72
           +K W +  +   G PT+   +L+++     +  + +  V +E L++++DPY+R       
Sbjct: 24  TKTWTLKKHFV-GYPTNSDFELKTSE----LPPLKNGEVLLEALFLTVDPYMRVAAKRLK 78
Query: 73  DGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDP 132
           +G           ++   +A+V+ SK+     G IVL +            DL     + 
Sbjct: 79  EG---------DTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEW 129
Query: 133 ASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKV 192
              IP    L ++G+PG  A+ G+  +   K G  V V+AAAG VG   GQ+AKLKGCKV
Sbjct: 130 PDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKV 189
Query: 193 VGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLN 252
           VG+ GSD+ V  L ++ G+D  FNY +  S +  L K  P+G D Y DNVGG+    V+ 
Sbjct: 190 VGAVGSDEKVAYL-QKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIG 248
Query: 253 HVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS-HMDRFADFTVEM 311
            +    RI +CG IS YN+      G    + +I +E++ME F++     D       ++
Sbjct: 249 QMKKFGRIAICGAISTYNRTGPLPPGPPPEI-VIYQELRMEAFVVYRWQGDARQKALKDL 307
Query: 312 ESYIKEGKIRSKHVIYYGVXXXXXXXXXXXXXXNIGKVVIQ 352
             ++ EGKI+ K  I  G               N+GK +++
Sbjct: 308 LKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVK 348

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 90  GIARVIR---SKDSKYSDGDIVLRAFLP---VAEYSLLPCDLLTRKLDPASGIPFPDYLS 143
           GI  V+    S  ++Y+ G  V  A++     AEY+++P  + T    P   +  P+YL+
Sbjct: 99  GIGEVVALGLSASARYTVGQAV--AYMAPGSFAEYTVVPASIAT----PVPSVK-PEYLT 151
Query: 144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK 203
            L + G  A++ ++ LG    G  V V+AAAGG G FA QL+K   C V+G+  SD+   
Sbjct: 152 LL-VSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSA 210
Query: 204 LLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILC 263
            LK   G D   NY +E      L + +P G+DV  ++VGG M +  ++ +    R+I+ 
Sbjct: 211 FLK-SLGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVI 268
Query: 264 GMISQYNKVWTERDGVRN---LLNMIGKEVKMEGFMIGSHMDRF 304
           G IS Y +  T    V+       ++ K   ++GF +  ++ ++
Sbjct: 269 GFISGY-QTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKY 311

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 90  GIARVIR---SKDSKYSDGDIVLRAFLP---VAEYSLLPCDLLTRKLDPASGIPFPDYLS 143
           GI  V+    S  ++Y+ G  V  A++     AEY+++P  + T    P   +  P+YL+
Sbjct: 70  GIGEVVALGLSASARYTVGQAV--AYMAPGSFAEYTVVPASIAT----PVPSVK-PEYLT 122
Query: 144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK 203
            L + G  A++ ++ LG    G  V V+AAAGG G FA QL+K   C V+G+  SD+   
Sbjct: 123 LL-VSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSA 181
Query: 204 LLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILC 263
            LK   G D   NY +E      L + +P G+DV  ++VGG M +  ++ +    R+I+ 
Sbjct: 182 FLK-SLGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVI 239
Query: 264 GMISQYNKVWTERDGVRN---LLNMIGKEVKMEGFMIGSHMDRF 304
           G IS Y +  T    V+       ++ K   ++GF +  ++ ++
Sbjct: 240 GFISGY-QTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKY 282

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 18/223 (8%)
Query: 90  GIARVIR---SKDSKYSDGDIVLRAFLP---VAEYSLLPCDLLTRKLDPASGIPFPDYLS 143
           GI  V+    S  ++Y+ G  V  A++     AEY+++P  + T    P   +  P+YL+
Sbjct: 91  GIGEVVALGLSASARYTVGQAV--AYMAPGSFAEYTVVPASIAT----PVPSVK-PEYLT 143
Query: 144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK 203
            L + G  A++ ++ LG    G  V V+AAAGG G FA QL+K   C V+G+  SD+   
Sbjct: 144 LL-VSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSA 202
Query: 204 LLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILC 263
            LK   G D   NY +E      L + +P G+DV  ++VGG M +  ++ +    R+I+ 
Sbjct: 203 FLK-SLGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVI 260
Query: 264 GMISQYNKVWTERDGVRNLL--NMIGKEVKMEGFMIGSHMDRF 304
           G IS Y             L   ++ K   ++GF +  ++ ++
Sbjct: 261 GFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKY 303

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 29/244 (11%)
Query: 32  LKLRSASVSLAIDSIPDHHVAVETLWISIDP---YLRATMTGTNDGL-YFPQFNLNQVIL 87
           LKLRS    +A+    DH V ++     ++P   Y+R+        L Y P  ++  VI 
Sbjct: 44  LKLRS---DIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIE 100
Query: 88  AFGIARVIRSKDSKYSDGDIVLRAFL---PVAEYSLLPCDL---LTRKLDPASGIPFPDY 141
           A G         S +  GD V  +       AEY+L        L  KLD   G      
Sbjct: 101 AVG------DNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQG------ 148
Query: 142 LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN 201
            +++GIP F A+  +      K+G +V V  A+GGVG+ A Q+A+  G K++G+ G+++ 
Sbjct: 149 -AAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEG 207
Query: 202 VKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKMLEAVLNHVNVHARI 260
            K++ +  G  + FN+  E+++   + KY    GID+ ++ +    L   L+ ++   R+
Sbjct: 208 QKIVLQN-GAHEVFNHR-EVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRV 265
Query: 261 ILCG 264
           I+ G
Sbjct: 266 IVVG 269

>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 18/212 (8%)
Query: 152  AWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY 211
            A+  + V G+ + G +V + + +GGVG  A  +A  +GC+V  + GS +    L+  F  
Sbjct: 1655 AYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQ 1714
Query: 212  DD--AFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQ 268
             D   F  + + SF+  + ++    G+D+ L+++  + L+A +  +  H R +  G    
Sbjct: 1715 LDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDL 1774
Query: 269  YNKVWTERDGVRNLLNM--IGKEVKMEGFMIGSHMDR----FADFTVEMESYIKEGKIRS 322
             N          + L M    K V   G ++ S  +     + + +  +++ I+EG ++ 
Sbjct: 1775 SNN---------HALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQP 1825
Query: 323  KHVIYYGVXXXXXXXXXXXXXXNIGKVVIQVK 354
                 +                +IGKVVIQV+
Sbjct: 1826 LKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVR 1857

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GDIVLRAFLP---VAEYSLLPCDLLTRKLDPASGIPFPDYLS---SLGIPGFAAWVG--- 155
           GD  + A LP    A+Y  +P  LL         +P P+ L+   +  IP   AW+    
Sbjct: 105 GDTAM-ALLPGGGQAQYVTVPEGLL---------MPIPEGLTLTQAAAIP--EAWLTAFQ 152
Query: 156 -IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA 214
            + ++G  ++G  V + A   GVG  A QL ++ G   + + GS   +++  E+ G    
Sbjct: 153 LLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQM-AEKLGAAAG 211
Query: 215 FNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMI 266
           FNY  E   +A L      G+++ LD +GG   E  +N + +  R +L G++
Sbjct: 212 FNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLM 263

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GDIVLRAFLP---VAEYSLLPCDLLTRKLDPASGIPFPDYLS---SLGIPGFAAWVG--- 155
           GD  + A LP    A+Y  +P  LL         +P P+ L+   +  IP   AW+    
Sbjct: 89  GDTAM-ALLPGGGQAQYVTVPEGLL---------MPIPEGLTLTQAAAIP--EAWLTAFQ 136
Query: 156 -IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA 214
            + ++G  ++G  V + A   GVG  A QL ++ G   + + GS   +++  E+ G    
Sbjct: 137 LLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQM-AEKLGAAAG 195
Query: 215 FNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMI 266
           FNY  E   +A L      G+++ LD +GG   E  +N + +  R +L G++
Sbjct: 196 FNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLM 247

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQP--KSGSNVFVSAA 173
           AEY     D + +KL+  S      +L +  +P  A    ++ L Q   K G  V + A 
Sbjct: 109 AEYVCASPDTIIQKLEKLS------FLQAASLPT-AGLTALQALNQAEVKQGDVVLIHAG 161
Query: 174 AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN 233
           AGGVG  A QLAK KG  V+ +T S  N   LK   G +   NY+ E   D  L    P 
Sbjct: 162 AGGVGHLAIQLAKQKGTTVI-TTASKRNHAFLK-ALGAEQCINYHEE---DFLLAISTP- 215
Query: 234 GIDVYLDNVGG 244
            +D  +D VGG
Sbjct: 216 -VDAVIDLVGG 225

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 29/212 (13%)
Query: 116 AEYSLLPCDLLTRK-----LDPASGIPFPDYLSSLGIPGFAAW-VGIEVLGQPKSGSNVF 169
           AEY +LP   L  K      + A+ IP   +L+        AW + ++ LG  + G +V 
Sbjct: 122 AEYVVLPEANLAPKPKNLSFEEAAAIPL-TFLT--------AWQMVVDKLGV-RPGDDVL 171
Query: 170 VSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTK 229
           V AA  GV + A Q+AKL G +V+ + GS+D ++  K   G D+  NY            
Sbjct: 172 VMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-ALGADETVNYTHPDWPKEVRRL 230
Query: 230 YFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE 289
               G D  +D+ G    E V+       RI + G  S Y       +G     ++  ++
Sbjct: 231 TGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGY-------EGTLPFAHVFYRQ 283
Query: 290 VKMEGFMIGSHMDRFADFTVEMESYIKEGKIR 321
           + + G  + S    F      +  +++EGK++
Sbjct: 284 LSILGSTMASKSRLF-----PILRFVEEGKLK 310

>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase Length = 198

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 136 IPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC 190
           +P PD L+     + G+    AW  +  +G+   G  V + +A GGVGM A  +AK+ G 
Sbjct: 5   VPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA 64
Query: 191 KVVGSTGSDDNVKLLK----EEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKM 246
           ++  + GSD   ++L     E  G   + ++  E+     LT  +  G+DV L+++ G+ 
Sbjct: 65  RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEI---LELTDGY--GVDVVLNSLAGEA 119
Query: 247 LE 248
           ++
Sbjct: 120 IQ 121

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 116 AEYSLLPCDLLTRKLDPASGIPFP---DYLSSLGIPG--FAAWVGIEVLGQPKSGSNVFV 170
           AEY LLP   +         +PFP   D + +  +P   F  W  +        G +V +
Sbjct: 123 AEYCLLPAGQI---------LPFPKGYDAVKAAALPETFFTVWANLFQXAGLTEGESVLI 173
Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
                G+G  A QLA+  G +V  + GS    +   E  G     NY SE  F A +   
Sbjct: 174 HGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEAC-ERLGAKRGINYRSE-DFAAVIKAE 231
Query: 231 FPNGIDVYLDNVGGKMLE 248
              G+D+ LD +G    E
Sbjct: 232 TGQGVDIILDXIGAAYFE 249

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS 222
           K G  V + AAAGGVG+   QL K+KG   +    +D+ +K+ K E+G +   N + E  
Sbjct: 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK-EYGAEYLINASKEDI 205
Query: 223 FDAALTKYFPNGIDVYLDNVGGKMLEAVL 251
               L      G+D   D+VG    E  L
Sbjct: 206 LRQVLKFTNGKGVDASFDSVGKDTFEISL 234

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 46/255 (18%)
Query: 48  DHHVAVETLWISIDPYLRATM-TGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGD 106
           +H + V TL +S++   +  + TG    L FP    +      G+   +    +++  GD
Sbjct: 53  EHDIIVRTLAVSLNYRDKLVLETGXGLDLAFPFVPASD---XSGVVEAVGKSVTRFRPGD 109
Query: 107 IVLRAFLP--------------------------VAEYSLLPCDLLT---RKLDPASGIP 137
            V+  F P                          ++EY +LP        + LD A    
Sbjct: 110 RVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEA-- 167
Query: 138 FPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG 197
                S+L   G  AW  +   G  ++G  V V    GGV +F  Q+AK  G +V+ ++ 
Sbjct: 168 -----STLPCAGLTAWFALVEKGHLRAGDRVVVQGT-GGVALFGLQIAKATGAEVIVTSS 221
Query: 198 SDDNVKLLKEEF--GYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVN 255
           S +    L   F  G D   N   E   +         G D  L+  GG  L   L  V 
Sbjct: 222 SREK---LDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVA 278
Query: 256 VHARIILCGMISQYN 270
              RI + G++  + 
Sbjct: 279 PDGRISVIGVLEGFE 293

>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain From Modular Polyketide Synthase Length = 795

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN---VKLLKEEFGYDDAFNYNS 219
           + G ++ V +AAGGVGM A QLA+  G +V  +T S+D    V+L +E        ++  
Sbjct: 344 RPGESLLVHSAAGGVGMAAIQLARHLGAEVY-ATASEDKWQAVELSREHLASSRTCDFEQ 402
Query: 220 EMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKV 272
           +      L      G+DV L+++ G+  +A L  +    R +  G     + V
Sbjct: 403 QF-----LGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVRDPV 450

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 25/207 (12%)
Query: 85  VILAFGIARVIRSKDSKYSD---GDIVLRAFLPVAEYS---LLPCDLLTR-----KLDPA 133
           +++ F  A V+       +D   G+ V     P+  YS   L P + L +      LD  
Sbjct: 62  IVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDV 121
Query: 134 SGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVV 193
                  +L+ L + G  A   +    + K G  V + AAAGG+G      A+  G  V+
Sbjct: 122 -------HLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVI 174
Query: 194 GSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNH 253
           G+  +++  +  + + G     NY+++   +         G+DV  D++G   L+  L+ 
Sbjct: 175 GTVSTEEKAETAR-KLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDC 233
Query: 254 VNVHARIILCGMISQYNKVWTERDGVR 280
           +         GM + Y       D +R
Sbjct: 234 LRPR------GMCAAYGHASGVADPIR 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	1e-135
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	1e-129
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	1e-123
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	3e-79
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-26
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	9e-26
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-24
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-24
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	3e-24
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	4e-24
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	6e-24
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	2e-22
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-22
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	4e-22
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	8e-22
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	9e-22
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	1e-21
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	3e-19
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	4e-19
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	8e-19
3gms_A	340	Putative NADPH:quinone reductase; structural genom	1e-18
4eye_A	342	Probable oxidoreductase; structural genomics, niai	1e-18
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-18
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	3e-18
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	1e-17
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	3e-17
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-15
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-13
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	8e-13
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	1e-12
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-12
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	6e-12
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	2e-11
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	3e-10
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	5e-10
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	6e-10
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	2e-09
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	5e-09
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	8e-07
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	5e-05
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	9e-05
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	9e-05
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	1e-04
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	2e-04
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	3e-04
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	3e-04
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	6e-04

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score =  388 bits (1000), Expect = e-135
 Identities = 135/347 (38%), Positives = 196/347 (56%), Gaps = 9/347 (2%)

Query: 10  TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMT 69
           T  +K+  +  Y   G PT       + +V L +     + V V+ L++S DPY+R  M 
Sbjct: 2   TATNKQVILKDYV-SGFPTESDFDFTTTTVELRVP-EGTNSVLVKNLYLSCDPYMRIRMG 59

Query: 70  GTNDGL--YFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLL-PCDLL 126
             +         +   Q I  +G++R+I S    Y  GD++    +   EYS++ P    
Sbjct: 60  KPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLW-GIVAWEEYSVITPMTHA 118

Query: 127 TRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAK 186
             K+   + +P   Y   LG+PG  A+ G   +  PK G  V+VSAA+G VG   GQLAK
Sbjct: 119 HFKIQH-TDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAK 177

Query: 187 LKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKM 246
           + GC VVGS GS + V LLK +FG+DDAFNY  E    AAL + FPNGID+Y +NVGGKM
Sbjct: 178 MMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKM 237

Query: 247 LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFAD 306
           L+AVL ++N+H RI +CGMISQYN     ++GV NL N+I K  +++GF++    D+++ 
Sbjct: 238 LDAVLVNMNMHGRIAVCGMISQYN--LENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSK 295

Query: 307 FTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV 353
           F   +  +I+EGKI     +  G+E   E+L  LF   N+GK V+ V
Sbjct: 296 FLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVV 342

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score =  372 bits (958), Expect = e-129
 Identities = 101/353 (28%), Positives = 176/353 (49%), Gaps = 10/353 (2%)

Query: 10  TVESKEWYISAY-ASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATM 68
            +  +   +++    +G P +++ ++    +    D+I +  V V TL++S+DPY+R  M
Sbjct: 6   AMIVQRVVLNSRPGKNGNPVAENFRMEEVYLP---DNINEGQVQVRTLYLSVDPYMRCRM 62

Query: 69  TGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTR 128
                  Y   + L+QV+   GI  +  SK +  + GD V   + P     +L  + L +
Sbjct: 63  NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEK 122

Query: 129 KLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN--VFVSAAAGGVGMFAGQLAK 186
                       +L ++G+PG  + +GI+  G   +GSN  + VS AAG  G  AGQ+  
Sbjct: 123 VDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGH 182

Query: 187 LKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK 245
             GC +VVG  G+ +   LL  E G+D A NY  + +    L +  P G+DVY DNVGG 
Sbjct: 183 FLGCSRVVGICGTHEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGN 241

Query: 246 MLEAVLNHVNVHARIILCGMISQYNKVWTE--RDGVRNLLNMIGKEVKMEGFMIGSHMDR 303
           + + V++ +N ++ IILCG ISQYNK                  + +  E F++ ++ D+
Sbjct: 242 ISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDK 301

Query: 304 FADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKAP 356
           F    +++  + KEGK++ K  +  G+E+   +  S+ +  NIGK ++ +   
Sbjct: 302 FEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 354

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score =  356 bits (916), Expect = e-123
 Identities = 110/347 (31%), Positives = 180/347 (51%), Gaps = 21/347 (6%)

Query: 11  VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG 70
           V++K W +  +   G PT    +L     ++ +  + +  V +E L++S+DPY+R     
Sbjct: 6   VKAKSWTLKKHF-QGKPTQSDFEL----KTVELPPLKNGEVLLEALFLSVDPYMRIAS-- 58

Query: 71  TNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTR-K 129
                   +     V++   +ARV+ SK+S +  G IVL A      + +     L +  
Sbjct: 59  -------KRLKEGAVMMGQQVARVVESKNSAFPAGSIVL-AQSGWTTHFISDGKGLEKLL 110

Query: 130 LDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG 189
            +    +P    L ++G+PG  A+ G+  +   K G  V VSAAAG VG   GQ+AKLKG
Sbjct: 111 TEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG 170

Query: 190 CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEA 249
           CKVVG+ GSD+ +  LK+  G+D AFNY +  S + AL K  P+G D Y DNVGG+ L  
Sbjct: 171 CKVVGAAGSDEKIAYLKQ-IGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNT 229

Query: 250 VLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFT 308
           VL+ +    +I +CG IS YN+   +     +  ++I K++++EGF++     D      
Sbjct: 230 VLSQMKDFGKIAICGAISVYNR-MDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKAL 288

Query: 309 VEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA 355
            ++  ++ EGKI+    +  G E+   +   + + +N+GK V  V A
Sbjct: 289 RDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAV--VTA 333

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  246 bits (629), Expect = 3e-79
 Identities = 72/317 (22%), Positives = 135/317 (42%), Gaps = 20/317 (6%)

Query: 48  DHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDI 107
           D  + V   ++ ++        G  D    P F++        +  +  S  ++Y+ G  
Sbjct: 53  DGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEG-IGEVVALGLSASARYTVGQA 111

Query: 108 V-LRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGS 166
           V   A    AEY+++P  +    +             +L + G  A++ ++ LG    G 
Sbjct: 112 VAYMAPGSFAEYTVVPASIA-TPVPSV-----KPEYLTLLVSGTTAYISLKELGGLSEGK 165

Query: 167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAA 226
            V V+AAAGG G FA QL+K   C V+G+  SD+    LK   G D   NY +E      
Sbjct: 166 KVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLK-SLGCDRPINYKTE-PVGTV 223

Query: 227 LTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYN--KVWTERDGVRNLLN 284
           L + +P G+DV  ++VGG M +  ++ +    R+I+ G IS Y      +          
Sbjct: 224 LKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAK 283

Query: 285 MIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSK--------HVIYYGVESFLES 336
           ++ K   ++GF +  ++ ++      +      G +  +           + G+ES   +
Sbjct: 284 LLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRA 343

Query: 337 LGSLFSSSNIGKVVIQV 353
           +  ++   N GK+V+++
Sbjct: 344 VNYMYMGKNTGKIVVEL 360

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  106 bits (267), Expect = 2e-26
 Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 33/246 (13%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AEY +LP   L  K         P  LS     ++ +    AW  +      + G +V V
Sbjct: 122 AEYVVLPEANLAPK---------PKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLV 172

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
            AA  GV + A Q+AKL G +V+ + GS+D ++  K   G D+  NY     +   + + 
Sbjct: 173 MAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-ALGADETVNYTHP-DWPKEVRRL 230

Query: 231 FPN-GIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE 289
               G D  +D+ G    E V+       RI + G  S Y       +G     ++  ++
Sbjct: 231 TGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGY-------EGTLPFAHVFYRQ 283

Query: 290 VKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIY--YGVESFLESLGSLFSSSNIG 347
           +     ++GS M   +     +  +++EGK++   V+     +E+  E    L      G
Sbjct: 284 LS----ILGSTMASKSRLF-PILRFVEEGKLKP--VVGQVLPLEAAAEGHRLLEERRVFG 336

Query: 348 KVVIQV 353
           KVV+QV
Sbjct: 337 KVVLQV 342

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  106 bits (266), Expect = 9e-26
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 50/267 (18%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGI--EVLGQPKSGSNV 168
           AE +L+  + L  K         PD+LS     + G+    A+  +        K G NV
Sbjct: 182 AEIALVKSNQLMPK---------PDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNV 232

Query: 169 FVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALT 228
            +  A+GG+G +A Q A   G   +    S    ++ +   G +   + N+E        
Sbjct: 233 LIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR-AMGAEAIIDRNAEGYRFWKDE 291

Query: 229 KYFP-----------------NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNK 271
                                  ID+  ++ G +   A +        I  C   S Y  
Sbjct: 292 NTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGYM- 350

Query: 272 VWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIY--YG 329
                    +   +     +    +IGSH   + +   E    I +G+I     +   Y 
Sbjct: 351 ------HEYDNRYLWMSLKR----IIGSHFANYREAW-EANRLIAKGRIHP--TLSKVYS 397

Query: 330 VESFLESLGSLFSSSNIGKVVIQVKAP 356
           +E   ++   +  + + GKV +   AP
Sbjct: 398 LEDTGQAAYDVHRNLHQGKVGVLCLAP 424

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  102 bits (256), Expect = 1e-24
 Identities = 54/254 (21%), Positives = 95/254 (37%), Gaps = 39/254 (15%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSL---GIP--GFAAWVGIEVLGQPKSGSNVFV 170
           AEY LLP   +         +PFP    ++    +P   F  W  +  +     G +V +
Sbjct: 123 AEYCLLPAGQI---------LPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLI 173

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
                G+G  A QLA+  G +V  + GS    +  +   G     NY SE  F A +   
Sbjct: 174 HGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLGAKRGINYRSE-DFAAVIKAE 231

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVR----NLLNMI 286
              G+D+ LD +G    E  +  +     + +   +           G      NL  ++
Sbjct: 232 TGQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLG----------GAVAEKVNLSPIM 281

Query: 287 GKEVKMEGFMIGSHMDRF-----ADFTVEMESYIKEGKIRSKHVIY--YGVESFLESLGS 339
            K + + G  +             D   E+   ++ G +    VI+  +  E   ++   
Sbjct: 282 VKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTV--APVIHKVFAFEDVADAHRL 339

Query: 340 LFSSSNIGKVVIQV 353
           L   S++GKV++ V
Sbjct: 340 LEEGSHVGKVMLTV 353

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  102 bits (255), Expect = 2e-24
 Identities = 45/267 (16%), Positives = 81/267 (30%), Gaps = 50/267 (18%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAW--VGIEVLGQPKSGSNV 168
           AEY ++    L  K         P +L+        +    A+  +  +   Q K G  V
Sbjct: 174 AEYGVVRASQLLPK---------PAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIV 224

Query: 169 FVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSE-------- 220
            +  A+GG+G +A Q  K  G   V    S      ++   G D   N            
Sbjct: 225 LIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR-ALGCDLVINRAELGITDDIAD 283

Query: 221 ---------MSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNK 271
                          + +      D+  ++ G       +        ++ CG  S Y  
Sbjct: 284 DPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGYL- 342

Query: 272 VWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIY--YG 329
                    +   +  K  K    ++GSH     +         + G +     +   Y 
Sbjct: 343 ------HTFDNRYLWMKLKK----IVGSHGANHEEQQ-ATNRLFESGAVVP--AMSAVYP 389

Query: 330 VESFLESLGSLFSSSNIGKVVIQVKAP 356
           +    E+   + +S  +GKV +   AP
Sbjct: 390 LAEAAEACRVVQTSRQVGKVAVLCMAP 416

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  100 bits (252), Expect = 3e-24
 Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 35/245 (14%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           +EY +LP                P  L      +L   G  AW  +   G  ++G  V V
Sbjct: 145 SEYVVLPEGWFVAA---------PKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVV 195

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
               GGV +F  Q+AK  G +V+ ++ S + +       G D   N   E  +   +   
Sbjct: 196 -QGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAF-ALGADHGINRLEE-DWVERVYAL 252

Query: 231 FPN-GIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE 289
             + G D  L+  GG  L   L  V    RI + G++  +            +  ++ K 
Sbjct: 253 TGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFEVSG-------PVGPLLLKS 305

Query: 290 VKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIY--YGVESFLESLGSLFSSSNIG 347
             ++G  +G           ++   +    ++   VI   Y      E+L +       G
Sbjct: 306 PVVQGISVGHR----RALE-DLVGAVDRLGLKP--VIDMRYKFTEVPEAL-AHLDRGPFG 357

Query: 348 KVVIQ 352
           KVVI+
Sbjct: 358 KVVIE 362

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  100 bits (251), Expect = 4e-24
 Identities = 57/279 (20%), Positives = 108/279 (38%), Gaps = 44/279 (15%)

Query: 105 GDIVLRAFLPV---AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGI 156
           GD V+ AF+     AE    P + +            PD +S     +  +    A+V +
Sbjct: 85  GDRVM-AFVNYNAWAEVVCTPVEFV---------YKIPDDMSFSEAAAFPMNFVTAYVML 134

Query: 157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFN 216
             +   + G +V V +A GGVG    QL        V  T S    + +K+       F+
Sbjct: 135 FEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKD--SVTHLFD 192

Query: 217 YNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS--------- 267
            N++  +   + +    G+D+ LD + G      L+ +      IL G  +         
Sbjct: 193 RNAD--YVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSF 250

Query: 268 -QYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDR------FADFTVEMESYIKEGKI 320
             + K W + + V N + +  +   + GF + + + +            ++     + KI
Sbjct: 251 FSFAKSWWQVEKV-NPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKI 309

Query: 321 RSKHVIY--YGVESFLESLGSLFSSSNIGKVVIQV-KAP 356
             K V+   + +E   E++  +    NIGK+++ V K P
Sbjct: 310 --KPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEKTP 346

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  100 bits (250), Expect = 6e-24
 Identities = 46/274 (16%), Positives = 91/274 (33%), Gaps = 35/274 (12%)

Query: 105 GDIVLRAFLPV---AEYSLLPCDLLTR--KLDPASGIPFPDYLS-----SLGIPGFAAWV 154
           GD V+ + +       ++L   D   +      +     P+ L+     ++ +    A++
Sbjct: 97  GDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYL 156

Query: 155 GIEVLGQPKSGSNVFV-SAAAGGVGMFAGQLAKLKGCKVVGSTGS----DDNVKLLKEEF 209
            +    +   G + F+ +     VG +A Q+ KL     +         D+ V  LK E 
Sbjct: 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-EL 215

Query: 210 GYDDAFNYNSEMSFD-----AALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCG 264
           G       +   S +         K       + L+ VGGK    +   +N +  ++  G
Sbjct: 216 GATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYG 275

Query: 265 MISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMES----YIKEGKI 320
            +S        +         I K     GF +   +    +      +    + +EGK+
Sbjct: 276 GMS-------FQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKL 328

Query: 321 RSKHVIYY---GVESFLESLGSLFSSSNIGKVVI 351
                I     G +   E      ++S  GK +I
Sbjct: 329 TDAKSIETLYDGTKPLHELYQDGVANSKDGKQLI 362

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 95.8 bits (239), Expect = 2e-22
 Identities = 41/267 (15%), Positives = 97/267 (36%), Gaps = 36/267 (13%)

Query: 105 GDIVLRAFLPV---AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGI 156
           GD V+ A   +      ++   + L         I  P  +      +LG+    A+  +
Sbjct: 109 GDWVIPANAGLGTWRTEAVFSEEAL---------IQVPSDIPLQSAATLGVNPCTAYRML 159

Query: 157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDD 213
               Q + G +V  +A+  GVG    Q+A   G + +       +++ L +     G + 
Sbjct: 160 MDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEH 219

Query: 214 AFNYNSEMSFDA--ALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNK 271
                     +              + L+ VGGK    +L  +     ++  G ++    
Sbjct: 220 VITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMA---- 273

Query: 272 VWTERDGVRNLLNMIGKEVKMEGFMIGSHM-----DRFADFTVEMESYIKEGKIRSKHVI 326
              ++  V ++  +I K++K+ GF +         D+F +  + +   I+ G++ +    
Sbjct: 274 ---KQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACS 330

Query: 327 YYGVESFLESLGSLFSSSNIGKVVIQV 353
              ++ +  +L +        K ++ +
Sbjct: 331 QVPLQDYQSALEASMKPFISSKQILTM 357

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 95.4 bits (238), Expect = 2e-22
 Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 37/251 (14%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AEY++               IP  D +      ++ +    A    + + + +      +
Sbjct: 121 AEYAVAEAAAC---------IPLLDTVRDEDGAAMIVNPLTAIAMFD-IVKQEGEKAFVM 170

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDA---AL 227
           +A A  +      LAK +G + + +   D+ + LLK+  G     N  +   F+A    +
Sbjct: 171 TAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI-GAAHVLNEKAP-DFEATLREV 228

Query: 228 TKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIG 287
            K       ++LD V G +  A+ N +   AR I+ G +        +   +R    +I 
Sbjct: 229 MK--AEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLD------PDATVIREPGQLIF 280

Query: 288 KEVKMEGFMIGSHM----DRFADFTVEMESYIKEGKIRSKHVIY--YGVESFLESLGSLF 341
           +   +EGF +   M    +R     +E +    +G+  +   +     +   +  +    
Sbjct: 281 QHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWST--DVTAVVPLAEAIAWV-PAE 337

Query: 342 SSSNIGKVVIQ 352
            +   GKV I+
Sbjct: 338 LTKPNGKVFIR 348

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 94.6 bits (236), Expect = 4e-22
 Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 43/258 (16%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSL---GIP--GFAAWVGIEVLGQPKSGSNVFV 170
           A+Y  +P  LL         +P P+ L+      IP     A+  + ++G  ++G  V +
Sbjct: 118 AQYVTVPEGLL---------MPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLI 168

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
            A   GVG  A QL ++ G   + + GS   +++ + + G    FNY  E  F  A  K+
Sbjct: 169 HAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KLGAAAGFNYKKE-DFSEATLKF 226

Query: 231 F-PNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE 289
               G+++ LD +GG   E  +N + +  R +L G++           G      +  K 
Sbjct: 227 TKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMG----------GGDINGPLFSKL 276

Query: 290 VKMEGFMIGSHM------------DRFADFTVEMESYIKEGKIRSKHVIY--YGVESFLE 335
           +   G +I S +            + F +  +   S     ++    V+   Y V    E
Sbjct: 277 LFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRL--LPVLDRIYPVTEIQE 334

Query: 336 SLGSLFSSSNIGKVVIQV 353
           +   + ++ NIGK+V+++
Sbjct: 335 AHKYMEANKNIGKIVLEL 352

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 93.4 bits (233), Expect = 8e-22
 Identities = 56/247 (22%), Positives = 93/247 (37%), Gaps = 42/247 (17%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AEY     D + +K          + LS     SL   G  A   +    + K G  V +
Sbjct: 109 AEYVCASPDTIIQK---------LEKLSFLQAASLPTAGLTALQALN-QAEVKQGDVVLI 158

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
            A AGGVG  A QLAK KG  V+  T S  N   LK   G +   NY+ E  F  A+   
Sbjct: 159 HAGAGGVGHLAIQLAKQKGTTVIT-TASKRNHAFLK-ALGAEQCINYHEE-DFLLAI--- 212

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARII-LCGMISQYNKVWTERDGVRNLLNMIGKE 289
               +D  +D VGG +    ++ +     I+ +  + +       ++   R         
Sbjct: 213 -STPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAGRVIEVAKQKHRR--------- 262

Query: 290 VKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIY--YGVESFLESLGSLFSSSNIG 347
               G +   +++        +   + E K+R    I   + +   + +   L +    G
Sbjct: 263 --AFGLLKQFNIEELH----YLGKLVSEDKLRI--EISRIFQLSEAVTAHELLETGHVRG 314

Query: 348 KVVIQVK 354
           K+V +V+
Sbjct: 315 KLVFKVR 321

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 93.5 bits (233), Expect = 9e-22
 Identities = 46/254 (18%), Positives = 85/254 (33%), Gaps = 36/254 (14%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSL---GIP--GFAAWVGIEVLGQPKSGSNVFV 170
           A+++ +   LL  K         P  L+      +P     AW G+    Q + G  V +
Sbjct: 106 AQFAAVDARLLASK---------PAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLI 156

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
               GGVG  A Q+A  +G +V   T    +++ ++ + G            + A  T  
Sbjct: 157 QGGGGGVGHVAIQIALARGARVFA-TARGSDLEYVR-DLGATPIDASREPEDYAAEHTA- 213

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYN--KVWTERDGVRNLLNMIGK 288
              G D+  D +GG +L+A  + V     ++ C     +    +  ++     +  +   
Sbjct: 214 -GQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWGTHKLAPLSFKQATYSGVFTLHTL 272

Query: 289 EVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLE-------SLGSLF 341
                    G  +             ++ GK+     +     S  E        LG   
Sbjct: 273 LANEGLAHFGEMLREADAL-------VQTGKLAP--RLDPRTFSIAEIGSAYDAVLGRND 323

Query: 342 SSSNIGKVVIQVKA 355
                GK+ I V+ 
Sbjct: 324 VPRQRGKIAITVEG 337

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 93.8 bits (234), Expect = 1e-21
 Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 34/229 (14%)

Query: 105 GDIVLRAFLPV---AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGI 156
           GD V  +       AEY+L     +            P+ L      ++GIP F A+  +
Sbjct: 112 GDRVFTSSTISGGYAEYALAADHTV---------YKLPEKLDFKQGAAIGIPYFTAYRAL 162

Query: 157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFN 216
                 K+G +V V  A+GGVG+ A Q+A+  G K++G+ G+++  K++  + G  + FN
Sbjct: 163 IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHEVFN 221

Query: 217 YNSEMSFDA---ALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVW 273
           +    ++             GID+ ++ +    L   L+ ++   R+I+ G         
Sbjct: 222 HREV-NYIDKIKKYVG--EKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGTIEI-- 276

Query: 274 TERDGVRNLLNMIGKEVKMEGFMIGSHMDRF-ADFTVEMESYIKEGKIR 321
                  N  + + KE  + G  + S        +   +++ ++ G ++
Sbjct: 277 -------NPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLK 318

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 87.1 bits (216), Expect = 3e-19
 Identities = 45/222 (20%), Positives = 77/222 (34%), Gaps = 30/222 (13%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQ----PKSGS 166
           +E+ ++  + ++ K         P  L+     SL      AW  I  +G       +G 
Sbjct: 135 SEFVVVSGNEVSHK---------PKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGK 185

Query: 167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAA 226
            V +  A+GGVG FA Q+ K     V     S D  +L++ + G DD  +Y S  S +  
Sbjct: 186 RVLILGASGGVGTFAIQVMKAWDAHVTA-VCSQDASELVR-KLGADDVIDYKSG-SVEEQ 242

Query: 227 LTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI 286
           L        D  LDNVGG       + +   +      +++ +            +L   
Sbjct: 243 LKS--LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTG 300

Query: 287 GKEVKMEGFMIGSHMDRFADFTV-------EMESYIKEGKIR 321
                         +     F +       ++   +  GKIR
Sbjct: 301 VTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIR 342

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 85.7 bits (213), Expect = 4e-19
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 26/176 (14%)

Query: 105 GDIVLRAFLPV---AEYSLLPCDLLTRKLDPASGIPFPDYLS-------SLGIPGFAAWV 154
           G+ V     P+   ++  L P + L         I  P  L         L + G  A  
Sbjct: 85  GERVCTCLPPLGAYSQERLYPAEKL---------IKVPKDLDLDDVHLAGLMLKGMTAQY 135

Query: 155 GIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA 214
            +    + K G  V + AAAGG+G      A+  G  V+G+  +++  +  + + G    
Sbjct: 136 LLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KLGCHHT 194

Query: 215 FNYNSEMSFDA---ALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS 267
            NY+++  F      +T     G+DV  D++G   L+  L+ +         G  S
Sbjct: 195 INYSTQ-DFAEVVREITG--GKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHAS 247

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 84.9 bits (211), Expect = 8e-19
 Identities = 44/174 (25%), Positives = 63/174 (36%), Gaps = 24/174 (13%)

Query: 105 GDIVLRAFLPV---AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGI 156
           GD V     P+   +E  +LP   L         +   D +S     +L + G      +
Sbjct: 82  GDRVAYGTGPLGAYSEVHVLPEANL---------VKLADSVSFEQAAALMLKGLTVQYLL 132

Query: 157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFN 216
               Q K G  +   AAAGGVG  A Q AK  G K++G+  S +     K   G  +  +
Sbjct: 133 RQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-ALGAWETID 191

Query: 217 YNSEMSFDAA---LTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS 267
           Y+ E         LT        V  D VG       L+ V     ++  G  S
Sbjct: 192 YSHE-DVAKRVLELTD--GKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNAS 242

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 84.6 bits (210), Expect = 1e-18
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 21/160 (13%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
            EY     D +         +P PD +       + I    AWV        +    + V
Sbjct: 100 QEYVKTSADFV---------VPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLV 150

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDA---AL 227
           +A    +G    QL+++   +++  T ++ + + L    G     + ++          L
Sbjct: 151 NACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL-RLGAAYVIDTSTA-PLYETVMEL 208

Query: 228 TKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS 267
           T     G D  +D++GG     +   +  +   +  G++S
Sbjct: 209 TN--GIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLS 246

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 84.6 bits (210), Expect = 1e-18
 Identities = 48/252 (19%), Positives = 86/252 (34%), Gaps = 42/252 (16%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AE   +    +         +P P  L      +L       +      GQ ++G  V V
Sbjct: 115 AERVAVAPSNI---------LPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLV 165

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
             AAGG+G  A Q+AK  G KV+         + +K   G D         +  A     
Sbjct: 166 LGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK-SVGADIVLPLEEGWA-KAVREAT 223

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVR-----NLLNM 285
              G+D+ +D +GG   +  +  +    R+++ G  +          G       N L +
Sbjct: 224 GGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAA----------GGIPTIKVNRLLL 273

Query: 286 IGKEVKMEGFMIGSHMDRFADFTV----EMESYIKEGKIRSKHVIY--YGVESFLESLGS 339
             +   + G   G  +   AD+       +E  + EG    +  +     +    ++L  
Sbjct: 274 --RNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEGM---RPPVSARIPLSEGRQALQD 328

Query: 340 LFSSSNIGKVVI 351
                  GK+V+
Sbjct: 329 FADGKVYGKMVL 340

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 24/174 (13%)

Query: 105 GDIVLRAFLPV---AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGI 156
           GD V+ A   +   +    +  D              P  +S     +  + G   +  +
Sbjct: 82  GDRVVYAQSALGAYSSVHNIIADKA---------AILPAAISFEQAAASFLKGLTVYYLL 132

Query: 157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFN 216
               + K        AAAGGVG+ A Q AK  G K++G+ G+    +    + G     N
Sbjct: 133 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVIN 191

Query: 217 YNSEMSFDAA---LTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS 267
           Y  E         +T      + V  D+VG    E  L+ +     ++  G  S
Sbjct: 192 YREE-DLVERLKEITG--GKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSS 242

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 38/273 (13%), Positives = 87/273 (31%), Gaps = 49/273 (17%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQP-------- 162
           ++Y++    +  +          P  LS     +L      A + +++LG P        
Sbjct: 108 SQYTVTRGRVWAKI---------PKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQ 158

Query: 163 ----KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYN 218
                    V V   +        Q+ +L G   +  T S  N  L K   G ++ F+Y 
Sbjct: 159 PPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIA-TCSPHNFDLAK-SRGAEEVFDYR 216

Query: 219 SEMSFDAALTKYFPNGIDVYLDNVGG----KMLEAVLNHVNVHARIILCGMISQYNKVWT 274
           +  +    +  Y  N +   LD +          A +         +    ++ + +   
Sbjct: 217 AP-NLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAG--GHYV---SLNPFPEHAA 270

Query: 275 ERDGVRNLLNM----IGKEVKMEGFMIGSHMDRFADFTVEM----ESYIKEGKIRSK--H 324
            R  V     +     G+             +    F  ++       +++G++      
Sbjct: 271 TRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLR 330

Query: 325 VIYYGVESFLESLGSLFSSSNIG-KVVIQVKAP 356
           V+  G +   + +  +      G K+V++++ P
Sbjct: 331 VVQGGFDHIKQGMELVRKGELSGEKLVVRLEGP 363

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 81.4 bits (202), Expect = 1e-17
 Identities = 52/265 (19%), Positives = 100/265 (37%), Gaps = 45/265 (16%)

Query: 104 DGDIVLRAFLPV---AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVG 155
           +G     A +P    AE   +P   L         +P P+ LS     +  +    A++ 
Sbjct: 68  EGRRYA-ALVPQGGLAERVAVPKGAL---------LPLPEGLSPEEAAAFPVSFLTAYLA 117

Query: 156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF 215
           ++   Q + G  V V AAAG +G  A Q+A+  G +V+ +    + + L     G ++A 
Sbjct: 118 LK-RAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAA 175

Query: 216 NYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTE 275
            Y                G+D+ L+ V GK +E  L  +    R++  G           
Sbjct: 176 TYAEV---PERAKA--WGGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAAE-------- 221

Query: 276 RDGVR---NLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIK--EGKIRSKHVIY--Y 328
             G       L ++ + + + GF +   +   A     +   +     ++R   V+   +
Sbjct: 222 --GEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELR--PVVGPVF 277

Query: 329 GVESFLESLGSLFSSSNIGKVVIQV 353
                  +  +L    + GKVV+++
Sbjct: 278 PFAEAEAAFRALLDRGHTGKVVVRL 302

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 80.3 bits (199), Expect = 3e-17
 Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 16/152 (10%)

Query: 128 RKLDPASG-IPFPDYLS--------SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVG 178
            K+      +  P   S        +  +    A          K G  V + AAAGGVG
Sbjct: 103 SKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVG 162

Query: 179 MFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDA---ALTKYFPNGI 235
           +   QL K+KG   +    +D+ +K+ K E+G +   N + E          T     G+
Sbjct: 163 LILNQLLKMKGAHTIAVASTDEKLKIAK-EYGAEYLINASKE-DILRQVLKFTN--GKGV 218

Query: 236 DVYLDNVGGKMLEAVLNHVNVHARIILCGMIS 267
           D   D+VG    E  L  +      +  G  S
Sbjct: 219 DASFDSVGKDTFEISLAALKRKGVFVSFGNAS 250

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 47/260 (18%), Positives = 94/260 (36%), Gaps = 44/260 (16%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAW------VGIEVLGQPKS 164
           AEY L+   L+ +   P +       +S     SL + G  A+       GI        
Sbjct: 100 AEYQLINERLVAKA--PKN-------ISAEQAVSLPLTGITAYETLFDVFGISRNRNENE 150

Query: 165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFD 224
           G  + +   AGGVG  A Q+AK  G +V+ +   ++ ++  K + G D   N+   +   
Sbjct: 151 GKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK-KMGADIVLNHKESLL-- 207

Query: 225 AALTKYFPNGIDVYLDNVGGKM-LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLL 283
                     +D         M  + ++  V     I                +  ++L 
Sbjct: 208 NQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATI----------VAFENDQDLN 257

Query: 284 NMIGKEVKMEG-FMIGSHMDRFADFTV------EMESYIKEGKIRS---KHVIYYGVESF 333
            +  K +     FM    +++  D         ++ + +++   +    K +     E+ 
Sbjct: 258 ALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENI 317

Query: 334 LESLGSLFSSSNIGKVVIQV 353
            ++   L S++ IGK+VI +
Sbjct: 318 YQAHQILESNTMIGKLVINL 337

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 18/160 (11%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           ++Y  +P D           +  P+  +     S  +    A   +E + + +  S +  
Sbjct: 128 SQYRCIPADQC---------LVLPEGATPADGASSFVNPLTALGMVETM-RLEGHSALVH 177

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
           +AAA  +G    Q+    G K+V      +   LLK + G     N  S  +F   LT+ 
Sbjct: 178 TAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQ-GAVHVCNAASP-TFMQDLTEA 235

Query: 231 -FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQY 269
               G  +  D  GG  L   +      A        S+Y
Sbjct: 236 LVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRY 275

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 67.2 bits (165), Expect = 8e-13
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 28/152 (18%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFV 170
           AE+++L  D +            PD LS     +L  P   AW   E +        V +
Sbjct: 99  AEFTVLNTDRVMTL---------PDNLSFERAAALPCPLLTAWQAFEKIP-LTKQREVLI 148

Query: 171 SAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
               G V     Q+    G  VV    +  +  L   + G    +   S++         
Sbjct: 149 -VGFGAVNNLLTQMLNNAGY-VVDLVSASLSQALAA-KRGVRHLYREPSQV--------- 196

Query: 231 FPNGIDVYLDNVGGKMLEAVLNHVNVHARIIL 262
                    D V  +   A++  +  +  II 
Sbjct: 197 -TQKYFAIFDAVNSQNAAALVPSLKANGHIIC 227

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVG-IEVLG----QPKSGSNVFV 170
           AE+ L+   ++ RK  P + + + +  ++L +    AW    + L      P +   + +
Sbjct: 122 AEFHLVDERIVGRK--PKT-LDWAE-AAALPLTSITAWEAFFDRLDVNKPVPGAAPAILI 177

Query: 171 SAAAGGVGMFAGQLAK-LKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTK 229
              AGGVG  A Q+A+      V+ +    +  + +K   G     +++  +        
Sbjct: 178 VGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK-SLGAHHVIDHSKPL-AAEVAAL 235

Query: 230 YFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILC 263
                  V+      K    + + +    R  L 
Sbjct: 236 GLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLI 269

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 31/243 (12%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAG 175
           AEY ++P      KL     +      + L   G   +  +           + V  A G
Sbjct: 127 AEYVIVPHYKYMYKLR---RLN-AVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGG 181

Query: 176 GVGMFAGQLAK-LKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAA-----LTK 229
           G+G  A Q+AK + G  ++G    ++ V+  K   G D   N + +   D       +T+
Sbjct: 182 GLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVINASMQ---DPLAEIRRITE 237

Query: 230 YFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGK 288
               G+D  +D     K L      +    + ++ G+               +   +   
Sbjct: 238 --SKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHY--------HAPLITLS 287

Query: 289 EVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGK 348
           E++  G ++G+  D      + +    + GK++        +E   E++ +L +   IG+
Sbjct: 288 EIQFVGSLVGNQSD-----FLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGR 342

Query: 349 VVI 351
            V+
Sbjct: 343 QVL 345

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 136 IPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC 190
              P   S     S+ I    A+  +  L   + G ++ V +AAGGVGM A QLA+  G 
Sbjct: 312 TRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA 371

Query: 191 KVVGSTGSDDNVKLLKEEFGYDDAFNYNS-EMSF-DAALTKYFPNGIDVYLDNVGGKMLE 248
           +V  +   D       +          +S    F    L      G+DV L+++ G+  +
Sbjct: 372 EVYATASEDK-----WQAVELSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGEFAD 426

Query: 249 AVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM--IGKEVKMEGF-MIGSHMDRFA 305
           A L  +    R +  G          + D VR+ + +      V  + F  + +   R  
Sbjct: 427 ASLRMLPRGGRFLELG----------KTD-VRDPVEVADAHPGVSYQAFDTVEAGPQRIG 475

Query: 306 DFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKAP 356
           +   E+    +   +    V  + V    E+L  L  + ++GK+V+ +   
Sbjct: 476 EMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVGKLVLTMPPV 526

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 6/205 (2%)

Query: 152  AWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF-G 210
            A+  + V G+ + G +V + + +GGVG  A  +A  +GC+V  + GS +    L+  F  
Sbjct: 1655 AYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQ 1714

Query: 211  YDDAFNYNS-EMSF-DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQ 268
             D+    NS + SF    L      G+D+ L+++  + L+A +  +  H R +  G    
Sbjct: 1715 LDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDL 1774

Query: 269  YNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYY 328
             N       G+   L  +     +   +       + + +  +++ I+EG ++      +
Sbjct: 1775 SN---NHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVF 1831

Query: 329  GVESFLESLGSLFSSSNIGKVVIQV 353
                   +   +    +IGKVVIQV
Sbjct: 1832 PRTKVEAAFRYMAQGKHIGKVVIQV 1856

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 38/193 (19%)

Query: 94  VIRSKDSKYSDGDIVLRAFLPV--------AEYSLLPCDLLTRKLDPASGIPFPDYLSSL 145
           V+ S+  ++ +GD V+     +        +EY+ L  + L       +         ++
Sbjct: 72  VVSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLT----LKEAMAI 127

Query: 146 GIPGFAAWVGIEVL---GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
           G  GF A + I  L   G       V V+ A GGVG  A  +   +G  V  STG     
Sbjct: 128 GTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH 187

Query: 203 KLLK----------EEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLN 252
             L+          E+   +     + +  + AA            +D VGG+ L  VL+
Sbjct: 188 DYLRVLGAKEVLAREDVMAERIRPLDKQR-WAAA------------VDPVGGRTLATVLS 234

Query: 253 HVNVHARIILCGM 265
            +     + + G+
Sbjct: 235 RMRYGGAVAVSGL 247

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 38/193 (19%)

Query: 94  VIRSKDSKYSDGDIVLRAFLPV--------AEYSLLPCDLLTRKLDPASGIPFPDYLSSL 145
           V+ S D ++++GD V+     +        +EY+ +P D L       S           
Sbjct: 73  VVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLS----LKEAMVY 128

Query: 146 GIPGFAAWVGI---EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
           G  GF A + +   E  G      +V V+ A GGVG  A  +   +G  VV STG+ +  
Sbjct: 129 GTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 188

Query: 203 KLLK----------EEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLN 252
             LK          E+         + +  +  A            +D VGGK L ++L+
Sbjct: 189 DYLKQLGASEVISREDVYDGTLKALSKQQ-WQGA------------VDPVGGKQLASLLS 235

Query: 253 HVNVHARIILCGM 265
            +     + + G+
Sbjct: 236 KIQYGGSVAVSGL 248

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 136 IPFPDYLS-----SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC 190
           +P PD L+     + G+    AW  +  +G+   G  V + +A GGVGM A  +AK+ G 
Sbjct: 5   VPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA 64

Query: 191 KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF-DAALTKYFPNGIDVYLDNVGGKMLEA 249
           ++  + GSD   ++L    G +   +  S + F D  L      G+DV L+++ G+ ++ 
Sbjct: 65  RIYTTAGSDAKREMLS-RLGVEYVGDSRS-VDFADEILELTDGYGVDVVLNSLAGEAIQR 122

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 47/184 (25%), Positives = 68/184 (36%), Gaps = 22/184 (11%)

Query: 94  VIRSKDSKYSDGDIVLRAFLPV--------AEYSLLPCDLLTRKLDPASGIPFPDYLSSL 145
           V  S+D ++  G  VL     V        AE + +  D L       S          +
Sbjct: 69  VHASEDPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLS----SRNAMII 124

Query: 146 GIPGFAAWVGI---EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
           G  GF A + +   E  G       V V+ A+GGVG  A  L    G +V   +G +   
Sbjct: 125 GTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTH 184

Query: 203 KLLKEEFGYDDAFNYNSEMSFDAALTK-YFPNGIDVYLDNVGGKMLEAVLNHVNVHARII 261
             LK   G +   +   E +    L K  +   I    D VG K+L  VL  +N    + 
Sbjct: 185 GYLK-SLGANRILS-RDEFAESRPLEKQLWAGAI----DTVGDKVLAKVLAQMNYGGCVA 238

Query: 262 LCGM 265
            CG+
Sbjct: 239 ACGL 242

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 15/199 (7%)

Query: 159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNY 217
           L Q     NV +   AG +G+ A Q A   G   V     S + + L K  FG    FN 
Sbjct: 155 LAQGCENKNVII-IGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK-SFGAMQTFN- 211

Query: 218 NSEMSFDAALTKYF-PNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTE 275
           +SEMS     +         + L+  G  + +E  +     HA++ L G + Q   + + 
Sbjct: 212 SSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSA 271

Query: 276 RDGVRNLLNMIGKEVKMEG-FMIGSHMDRFADFTVEMESYIKEGKIRSKHVI--YYGVES 332
                    ++ KE+ + G +M  S      ++       + E K+  + +I      ES
Sbjct: 272 -----TFGKILRKELTVIGSWMNYSSPWPGQEWE-TASRLLTERKLSLEPLIAHRGSFES 325

Query: 333 FLESLGSLFSSSNIGKVVI 351
           F +++  +  ++  GKV++
Sbjct: 326 FAQAVRDIARNAMPGKVLL 344

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 46/242 (19%), Positives = 82/242 (33%), Gaps = 28/242 (11%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSL---GIPGFAAWVGIEVLGQPKSGSNVFVSA 172
           +EY L+       KL+    +  P   + L   G     A           +   V +  
Sbjct: 123 SEYMLVKSSRWLVKLN---SLS-PVEAAPLADAGTTSMGAIRQALPFISKFAEPVV-IVN 177

Query: 173 AAGGVGMFAGQLAK--LKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY 230
             GG+ ++  Q+ K  +K   +VG + S  +      E G D         S    LT  
Sbjct: 178 GIGGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-ELGADYVSEMKDAESLINKLTD- 235

Query: 231 FPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKE 289
              G  + +D VG  +    +   +     IIL GM  +   +           +     
Sbjct: 236 -GLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSL--------EAFDTAVWN 286

Query: 290 VKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKV 349
            K+ G   GS  D       ++    + GKI+  ++I   ++   ++  +L      G+ 
Sbjct: 287 KKLLGSNYGSLND-----LEDVVRLSESGKIKP-YIIKVPLDDINKAFTNLDEGRVDGRQ 340

Query: 350 VI 351
           VI
Sbjct: 341 VI 342

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 14/161 (8%)

Query: 163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS 222
            +G  V +S AAGG+G  A Q AK  G +V+G  G +   +L +   G +   ++  E  
Sbjct: 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-SIGGEVFIDFTKEKD 226

Query: 223 FDAALTKYFPNGIDVYLDNVGGKM-LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRN 281
              A+ K    G    ++    +  +EA   +V  +   +L GM +             +
Sbjct: 227 IVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPA-------GAKCCSD 279

Query: 282 LLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS 322
           + N + K + + G  +G+  D     T E   +   G ++S
Sbjct: 280 VFNQVVKSISIVGSYVGNRAD-----TREALDFFARGLVKS 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 63/472 (13%), Positives = 126/472 (26%), Gaps = 178/472 (37%)

Query: 4   AEEKLETVESKEWYISA----------YASDGVP-TSDHLKLRSA--------------- 37
             E+ +       YI            +A   V     +LKLR A               
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 38  -----SVSLAIDSIPDHHVAV----ETLWISI----DP----------YLRATMTGTN-- 72
                +  +A+D    + V      +  W+++     P            +     T+  
Sbjct: 159 LGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 73  DGLYFPQFNLNQVILAFGIARVIRSKDSKYS----DGDI----VLRAFLPVAEYSLLPCD 124
           D     +  ++ +     + R+++SK  +        ++       AF        L C 
Sbjct: 218 DHSSNIKLRIHSIQAE--LRRLLKSKPYENCLLVLL-NVQNAKAWNAFN-------LSCK 267

Query: 125 LL--TR------KLDPA-----SGIPFPDYLS---SLGIPGFAAWVGIEVLGQPKS--GS 166
           +L  TR       L  A     S       L+      +     ++       P+    +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTT 325

Query: 167 NVFVSAAAGGVGMFAGQLA---------------KLKGCKVVGSTGS------------- 198
           N         + + A  +                KL    ++ S+ +             
Sbjct: 326 NPRR------LSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDR 377

Query: 199 ----DDNVK-------LLKEEFGYDDAFNYNSEMSFDAALTKYFPNGI----DVYLDNVG 243
                 +         L+  +    D     +++   + + K           +YL+   
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE--- 434

Query: 244 GKMLEAVLNHVNVHARIILCGMISQYN--KVWTERDGVRNLLNMIGKEVKMEGFM---IG 298
             +   + N   +H  I+       YN  K +   D +   L         + +    IG
Sbjct: 435 --LKVKLENEYALHRSIV-----DHYNIPKTFDSDDLIPPYL---------DQYFYSHIG 478

Query: 299 SHM------DRFADFTVEMESYIK----EGKIRSKHVIYYGVESFLESLGSL 340
            H+      +R   F      ++     E KIR     +    S L +L  L
Sbjct: 479 HHLKNIEHPERMTLFR---MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 27/203 (13%)

Query: 159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYN 218
            G    G  V V   AG +GM    +AK  G   V  T          +E G D     +
Sbjct: 166 RGGVTLGHKVLV-CGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQIS 224

Query: 219 SEMSFDAA--LTKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTE 275
            E   + A  +        +V ++  G    ++A +        ++L G+ S+   V   
Sbjct: 225 KESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTV--- 281

Query: 276 RDGVRNLLNMIGKEVKMEGFMIGSHMDRFA-DF--TVEMESYIKEGKIRSKHVI--YYGV 330
                 LL+   +EV     + G    R+   +   + M   +    +  K ++   + +
Sbjct: 282 -----PLLHAAIREVD----IKGVF--RYCNTWPVAISM---LASKSVNVKPLVTHRFPL 327

Query: 331 ESFLESLGSLFSSSNIGKVVIQV 353
           E  LE+  +      + K++++ 
Sbjct: 328 EKALEAFETFKKGLGL-KIMLKC 349

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 18/199 (9%)

Query: 160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNS 219
           G   SG +V +   AG +G+ A  + +  G   +  +  +         +  D   N   
Sbjct: 160 GSGVSGKSVLI-TGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA-DRLVN-PL 216

Query: 220 EMSFDAALTKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDG 278
           E      + +   +G++V L+  G    +   L  +       + G+        ++   
Sbjct: 217 EEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGI-------PSDPIR 269

Query: 279 VRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVI--YYGVESFLES 336
                 ++ + +       G    R     ++  + +  G++    ++     +  + E+
Sbjct: 270 FDLAGELVMRGIT----AFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREA 325

Query: 337 LGSLFSSSNIGKVVIQVKA 355
              L +S    KV++  KA
Sbjct: 326 F-GLLASGQAVKVILDPKA 343

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 45/240 (18%), Positives = 94/240 (39%), Gaps = 24/240 (10%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGI-EVLGQPKSGSNVFVSAAA 174
           AE+       + +     S     + ++ L   G  A+  + +       G+ V +    
Sbjct: 138 AEFMRTSHRSVIKLPKDISREKLVE-MAPLADAGITAYRAVKKAARTLYPGAYVAIVGV- 195

Query: 175 GGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM-SFDAALTKYFP 232
           GG+G  A QL K+     V+     ++ +KL +   G D   +   +       LT+   
Sbjct: 196 GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RLGADHVVDARRDPVKQVMELTR--G 252

Query: 233 NGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVK 291
            G++V +D VG    ++     +    R+I+ G   +              + +I  EV 
Sbjct: 253 RGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGELRF---------PTIRVISSEVS 303

Query: 292 MEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI 351
            EG ++G++++       E+ +   +GK+R   V  + ++   + L  L     +G+ V+
Sbjct: 304 FEGSLVGNYVE-----LHELVTLALQGKVRV-EVDIHKLDEINDVLERLEKGEVLGRAVL 357

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 40/225 (17%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLG----------------IPGFAAWVGIEVL 159
            E+       L         +  P  +  +G                +            
Sbjct: 125 REWWYDDPKYL---------VKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCD 175

Query: 160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNS 219
               +   V V    G +G+    L +  G +V  +   +     +++    +   NY +
Sbjct: 176 DGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPT--EVEQTVIEETKTNYYN 232

Query: 220 EMSFDAALTKYFPNGIDVYLDNVG--GKMLEAVLNHVNVHARIILCGMISQYNKVWTERD 277
             +    L        DV +D  G    +L  V+  +  +  + L G  +      +   
Sbjct: 233 SSNGYDKLKDS-VGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTS----GSVPL 287

Query: 278 GVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS 322
             + L  ++         +IG    +   F   +  ++   K   
Sbjct: 288 DYKTLQEIVHTNKT----IIGLVNGQKPHFQQAVV-HLASWKTLY 327

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 18/159 (11%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVG-IEVLGQPKSGSNVFVSAAA 174
           + + +L  +    K+         D L+       A      +   +  +G  V +  A 
Sbjct: 150 SSHIVLDPETDVLKVSEK--DDL-DVLAMAM-CSGATAYHAFDEYPESFAGKTVVIQGA- 204

Query: 175 GGVGMFAGQLAKLKGC-KVVGSTGSDDNVKL-LKEEFGYDDAFNYNSEMSFDAA-----L 227
           G +G+F   +A+  G   V+   GS +  +L L EE G D   N       +       +
Sbjct: 205 GPLGLFGVVIARSLGAENVIVIAGSPN--RLKLAEEIGADLTLNRRETSVEERRKAIMDI 262

Query: 228 TKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGM 265
           T     G D  L+  G  + L      +       + G+
Sbjct: 263 TH--GRGADFILEATGDSRALLEGSELLRRGGFYSVAGV 299

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS 222
           K G  V +    GG+G  A Q AK  G  VV     D+ ++L K E G D   N   E +
Sbjct: 163 KPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVVNPLKEDA 220

Query: 223 FDAALTKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRN 281
             A   K    G+   +         ++  N +      +L G+  +   +         
Sbjct: 221 --AKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPI--------P 270

Query: 282 LLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS 322
           + + +   +K+ G ++G+  D       E   +  EGK+++
Sbjct: 271 IFDTVLNGIKIIGSIVGTRKD-----LQEALQFAAEGKVKT 306

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 33/254 (12%), Positives = 67/254 (26%), Gaps = 40/254 (15%)

Query: 116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGI---P---GFAAW--VGIEVLGQPKSGSN 167
           +E+   P   L         +  P   + LG    P      A               S+
Sbjct: 125 SEFFTSPEKYL---------VRIPRSQAELGFLIEPISITEKALEHAYASRSAFDWDPSS 175

Query: 168 VFVSAAAGGVGMFAGQLAKLKGC---KVVGSTGSDDNVKLLK--EEFGYDDAFNYNSEMS 222
            FV    G +G+    + K+       +      D     +   EE       +  + + 
Sbjct: 176 AFV-LGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVE 234

Query: 223 FDAALTKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRN 281
               +       +D   +  G  K     +  +  +    L G+    +    E D    
Sbjct: 235 DVPDVY----EQMDFIYEATGFPKHAIQSVQALAPNGVGALLGV---PSDWAFEVDAGAF 287

Query: 282 LLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVI--YYGVESFLESLGS 339
              M+         ++GS       F     ++ K  K   + ++   + +  F  +   
Sbjct: 288 HREMVLHNKA----LVGSVNSHVEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFD- 342

Query: 340 LFSSSNIGKVVIQV 353
                   K  I+ 
Sbjct: 343 --DDDTTIKTAIEF 354

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 30/207 (14%)

Query: 159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYN 218
               + G+ V V  A G +G+ +   AK  G  VV +  S   +++ K   G D     +
Sbjct: 163 RAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTLVVD 220

Query: 219 ----SEMSFDAALTKYFPNGIDVYLDNVG-GKMLEAVLNHVNVHARIILCGMISQYNKVW 273
                E S    +     +  +V +D  G  K +   +N       ++L GM SQ   V 
Sbjct: 221 PAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTV- 279

Query: 274 TERDGVRNLLNMIGKEVKMEGFMIGSHMDRFA-DF--TVEMESYIKEGKIRSKHVI--YY 328
                   L+N   +E+ ++         R+  D+   +EM   +  G+   K ++   +
Sbjct: 280 -------PLVNACAREIDIKSVF------RYCNDYPIALEM---VASGRCNVKQLVTHSF 323

Query: 329 GVESFLESLGSLFS-SSNIGKVVIQVK 354
            +E  +++  +    + N  KV+I  +
Sbjct: 324 KLEQTVDAFEAARKKADNTIKVMISCR 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	100.0
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.91
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.94
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.92
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.83
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.81
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.62
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.49
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.29
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.29
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.27
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.26
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.12
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.12
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.11
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.05
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.0
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.0
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.94
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.93
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.9
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.88
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.88
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.87
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.87
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.87
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.85
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.85
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.85
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.85
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.85
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.85
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.83
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.83
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.83
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.83
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.82
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.81
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.81
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.81
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.8
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.8
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.79
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.78
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.78
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.78
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.78
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.78
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.77
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.77
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.76
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.76
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.76
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.75
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.75
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.75
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.75
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.75
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.75
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.75
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.75
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.73
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.73
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.72
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.72
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.72
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.72
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.71
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.71
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.71
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.71
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.71
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.7
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.7
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.7
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.7
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.7
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.69
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.69
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.69
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.69
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.69
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.68
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.68
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.68
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.68
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.68
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.68
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.68
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.67
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.67
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.67
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.67
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.67
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.67
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.67
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.66
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.66
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.65
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.65
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.65
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.64
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.64
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.64
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.64
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.64
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.63
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.63
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.63
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.62
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.62
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.62
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.61
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.6
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.6
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.6
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.6
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.6
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.6
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.6
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.59
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.59
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.59
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.59
1spx_A	278	Short-chain reductase family member (5L265); paral	97.58
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.58
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.58
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.58
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.58
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.57
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.57
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.56
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.56
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.56
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.56
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.56
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.55
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.55
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.55
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.55
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.54
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.54
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.54
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.54
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.53
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.52
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.52
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.52
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.51
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.51
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.51
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.5
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.5
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.5
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.5
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.49
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.49
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.48
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.48
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.48
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.47
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.47
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.46
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.46
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.45
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.45
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.45
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.45
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.44
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.44
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.43
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.43
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.42
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.42
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.42
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.41
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.41
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.41
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.41
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.4
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.4
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.4
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.39
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.39
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.38
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.38
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.38
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.38
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.36
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.35
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.35
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.35
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.35
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.35
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.34
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.34
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.34
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.34
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.34
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.33
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.33
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.33
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.31
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.31
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.3
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.3
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.29
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.28
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.28
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.28
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.28
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.27
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.25
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.25
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.25
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.25
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.23
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.23
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.23
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.23
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.22
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.22
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.22
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.22
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.21
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.2
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.2
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.18
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.18
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.18
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.17
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.16
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.16
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.15
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.15
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.14
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.14
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.12
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.12
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.11
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.11
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.11
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	97.11
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.11
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.09
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.08
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.07
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.05
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.05
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	97.04
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.04
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.03
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.03
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.02
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.0
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.98
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.97
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.97
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.97
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.97
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.96
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.96
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.96
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.95
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.94
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.94
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.94
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.93
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.92
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.92
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.92
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.92
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.92
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.91
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.91
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	96.9
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.9
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.88
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.88
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.87
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.87
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.87
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.86
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.85
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	96.85
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.84
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.84
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.82
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.8
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.78
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.78
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.78
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.77
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.75
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.74
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.74
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.73
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.73
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.73
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.72
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.72
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.71
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.71
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.71
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.7
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.69
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.68
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.68
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.68
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.68
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.68
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.68
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.68
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.67
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.67
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.67
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.66
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.65
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.64
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.64
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.64
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.63
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.63
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.62
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.62
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.62
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.6
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.59
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.58
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.56
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.55
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.54
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.54
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.53
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.52
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.51
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.51
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.5
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.5
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.5
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.49
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.48
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.48
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.48
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.47
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.47
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.45
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.44
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.42
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.42
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.42
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.41
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.41
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.4
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.39
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.38
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.38
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.38
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.37
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.36
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.36
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.35
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.34
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.34
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.31
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.31
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.31
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.3
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.29
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	96.29
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.29
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.28
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.28
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.28
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.27
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.26
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.24
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.23
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.23
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.23
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.22
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.22
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	96.21
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.21
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	96.21
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.2
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.19
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.19
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.19
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.19
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.16
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.16
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.16
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.16
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.15
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.14
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.14
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.14
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.13
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.13
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.11
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.11
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	96.11
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	96.11
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.1
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.1
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.08
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	96.08
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.07
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.07
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.06
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.06
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.05
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.05
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	96.04
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.04
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	96.04
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	96.02
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.99
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.99
2pt6_A	321	Spermidine synthase; transferase, structural genom	95.99
4had_A	350	Probable oxidoreductase protein; structural genomi	95.99
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.98
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	95.97
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.95
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	95.94
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	95.94
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	95.94
2o07_A	304	Spermidine synthase; structural genomics, structur	95.94
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.93

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=4.8e-53  Score=388.54  Aligned_cols=321  Identities=19%  Similarity=0.228  Sum_probs=276.9

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +.+||++++..+     ++++.+++++.+.    |+|+++||||||.+++||++|++.+.|.....  .++|...|+|++
T Consensus        26 p~~MkA~~~~~~-----g~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~~p~i~G~E~~   94 (353)
T 4dup_A           26 PQEMRFVDLKSF-----GGPDVMVIGKRPL----PVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPP--KDASPILGLELS   94 (353)
T ss_dssp             CSSEEEEEESSS-----SSGGGEEEEEECC----CCCCTTEEEEEEEEEEECHHHHHHHTTSSCCC--TTSCSSSCCEEE
T ss_pred             ChheeEEEEccC-----CCccceEEEeccC----CCCCCCEEEEEEEEEecCHHHHHHhCCCCCCC--CCCCCccccccE
Confidence            456999999875     4568899998865    78999999999999999999999998764432  223444455999


Q ss_pred             EEEEEeccCCCCCCCCCEEEe--ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           90 GIARVIRSKDSKYSDGDIVLR--AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~--~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      |+|+++|+++++|++||||+.  ..|+|+||++++++.++++   |+++++++ ||+++++++|||+++.+.+++++|++
T Consensus        95 G~V~~vG~~v~~~~vGdrV~~~~~~G~~aey~~v~~~~~~~~---P~~~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~  170 (353)
T 4dup_A           95 GEIVGVGPGVSGYAVGDKVCGLANGGAYAEYCLLPAGQILPF---PKGYDAVK-AAALPETFFTVWANLFQMAGLTEGES  170 (353)
T ss_dssp             EEEEEECTTCCSCCTTCEEEEECSSCCSBSEEEEEGGGEEEC---CTTCCHHH-HHTSHHHHHHHHHHHTTTTCCCTTCE
T ss_pred             EEEEEECCCCCCCCCCCEEEEecCCCceeeEEEEcHHHcEeC---CCCCCHHH-HhhhhhHHHHHHHHHHHhcCCCCCCE
Confidence            999999999999999999992  2499999999999988665   99999999 78999999999999987899999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhH
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKML  247 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~  247 (356)
                      |||+||+|++|++++|+|+..|++|+++++++++.+.++ ++|++.++|+++ .++.+.+.+.+++++|++|||+|.+.+
T Consensus       171 VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~-~~~~~~~~~~~~~g~Dvvid~~g~~~~  248 (353)
T 4dup_A          171 VLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLGAKRGINYRS-EDFAAVIKAETGQGVDIILDMIGAAYF  248 (353)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEETTT-SCHHHHHHHHHSSCEEEEEESCCGGGH
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEEEeCCc-hHHHHHHHHHhCCCceEEEECCCHHHH
Confidence            999999999999999999999999999999999999999 899999999987 778888888887789999999999999


Q ss_pred             HHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc-----hHHHHHHHHHHHHHcCCeee
Q 042784          248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD-----RFADFTVEMESYIKEGKIRS  322 (356)
Q Consensus       248 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~g~i~~  322 (356)
                      ..++++++++|+++.+|...+..      ....+...++.+++++.++.......     ...+.++++++++++|++++
T Consensus       249 ~~~~~~l~~~G~iv~~g~~~~~~------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~  322 (353)
T 4dup_A          249 ERNIASLAKDGCLSIIAFLGGAV------AEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAP  322 (353)
T ss_dssp             HHHHHTEEEEEEEEECCCTTCSE------EEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSCC
T ss_pred             HHHHHHhccCCEEEEEEecCCCc------ccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCccC
Confidence            99999999999999999765421      11134556778999999987765432     12234788999999999999


Q ss_pred             eeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          323 KHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       323 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      .++++|+++++++||+.+.+++..||+|+++
T Consensus       323 ~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          323 VIHKVFAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             CEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             CcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999999999999999999999999999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.4e-52  Score=383.81  Aligned_cols=317  Identities=17%  Similarity=0.199  Sum_probs=268.9

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +.+||++++..+     ++++.+++++.+.    |+|+++||||||.+++||++|++++.|........|..+|  +|++
T Consensus        19 p~~MkA~~~~~~-----g~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G--~E~~   87 (342)
T 4eye_A           19 PGSMKAIQAQSL-----SGPEGLVYTDVET----PGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPG--IETA   87 (342)
T ss_dssp             CCEEEEEEECSS-----SGGGGEEEEEEEC----CCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCC--SEEE
T ss_pred             CcceEEEEEecC-----CCCceeEEEeCCC----CCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccc--eeEE
Confidence            456899988875     4567899999866    7899999999999999999999999976433333445555  5999


Q ss_pred             EEEEEeccCCCCCCCCCEEEe--ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           90 GIARVIRSKDSKYSDGDIVLR--AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~--~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      |+|+++|++++ |++||||+.  ..|+|+||++++++.++++   |+++++++ ||+++++++|||+++.+.+++++|++
T Consensus        88 G~V~~vG~~v~-~~vGDrV~~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~  162 (342)
T 4eye_A           88 GVVRSAPEGSG-IKPGDRVMAFNFIGGYAERVAVAPSNILPT---PPQLDDAE-AVALIANYHTMYFAYARRGQLRAGET  162 (342)
T ss_dssp             EEEEECCTTSS-CCTTCEEEEECSSCCSBSEEEECGGGEEEC---CTTSCHHH-HHHHTTHHHHHHHHHHTTSCCCTTCE
T ss_pred             EEEEEECCCCC-CCCCCEEEEecCCCcceEEEEEcHHHeEEC---CCCCCHHH-HHHhhhHHHHHHHHHHHhcCCCCCCE
Confidence            99999999999 999999993  2589999999999988665   99999999 78999999999999988899999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC-CceEEEECCchhh
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN-GIDVYLDNVGGKM  246 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~~  246 (356)
                      |||+|++|++|++++|+|+..|++|+++++++++.++++ ++|++.++|+.  .++.+.+++.+++ ++|++|||+|.+.
T Consensus       163 VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~v~~~~--~~~~~~v~~~~~~~g~Dvvid~~g~~~  239 (342)
T 4eye_A          163 VLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK-SVGADIVLPLE--EGWAKAVREATGGAGVDMVVDPIGGPA  239 (342)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSEEEESS--TTHHHHHHHHTTTSCEEEEEESCC--C
T ss_pred             EEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEecCc--hhHHHHHHHHhCCCCceEEEECCchhH
Confidence            999999999999999999999999999999999999999 89999999987  6788899998865 8999999999999


Q ss_pred             HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc----chHHHHHHHHHHHHHcCCeee
Q 042784          247 LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM----DRFADFTVEMESYIKEGKIRS  322 (356)
Q Consensus       247 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~g~i~~  322 (356)
                      +..++++++++|+++.+|...+.       ....+...++.+++++.++....+.    ....+.++++++++++| +++
T Consensus       240 ~~~~~~~l~~~G~iv~~G~~~~~-------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~  311 (342)
T 4eye_A          240 FDDAVRTLASEGRLLVVGFAAGG-------IPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-MRP  311 (342)
T ss_dssp             HHHHHHTEEEEEEEEEC-----------------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT-CCC
T ss_pred             HHHHHHhhcCCCEEEEEEccCCC-------CCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC-CCC
Confidence            99999999999999999976541       1123444567899999998765442    23346789999999999 999


Q ss_pred             eeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          323 KHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       323 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      .++++|+++++++||+.+.+++..||+|+++
T Consensus       312 ~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          312 PVSARIPLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             CEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             CcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999999999999999999999999999974

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=1.5e-52  Score=386.64  Aligned_cols=312  Identities=21%  Similarity=0.297  Sum_probs=270.3

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +.+||++++..+      +++.+++++.++    |+|+++||||||.+++||++|++.+.|........|..+|  +|++
T Consensus        25 ~~~mkA~~~~~~------~~~~l~~~e~p~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G--hE~~   92 (363)
T 3uog_A           25 SKWMQEWSTETV------APHDLKLAERPV----PEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPA--SDMS   92 (363)
T ss_dssp             CSEEEEEEBSCT------TTTCCEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCC--CEEE
T ss_pred             chhhEEEEEccC------CCCCcEEEeeeC----CCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcc--cceE
Confidence            456888888754      357899999866    7899999999999999999999999875433223344455  5999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec--------------------------cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA--------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~--------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      |+|+++|+++++|++||||+..                          .|+|+||++++++.++++   |+++++++ ||
T Consensus        93 G~V~~vG~~v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa  168 (363)
T 3uog_A           93 GVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAA---PKSLDAAE-AS  168 (363)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEEC---CTTSCHHH-HH
T ss_pred             EEEEEECCCCCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEEC---CCCCCHHH-Hh
Confidence            9999999999999999999932                          289999999999988655   99999999 78


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      +++++++|||+++.+.+++++|++|||+| +|++|++++|+|+..|++|++++++++++++++ ++|++.++|+.. .++
T Consensus       169 ~l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~-~~~  245 (363)
T 3uog_A          169 TLPCAGLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAF-ALGADHGINRLE-EDW  245 (363)
T ss_dssp             TTTTHHHHHHHHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTCSEEEETTT-SCH
T ss_pred             hcccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH-HcCCCEEEcCCc-ccH
Confidence            99999999999997789999999999999 699999999999999999999999999999998 899999999543 688


Q ss_pred             HHHHHHHCCC-CceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc
Q 042784          224 DAALTKYFPN-GIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD  302 (356)
Q Consensus       224 ~~~i~~~~~~-~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
                      .+.+++++++ ++|+||||+|...+..++++++++|+++.+|......       ...+...++.+++++.++...+   
T Consensus       246 ~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~-------~~~~~~~~~~~~~~i~g~~~~~---  315 (363)
T 3uog_A          246 VERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFE-------VSGPVGPLLLKSPVVQGISVGH---  315 (363)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCSSCE-------ECCBTTHHHHTCCEEEECCCCC---
T ss_pred             HHHHHHHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCCCcc-------cCcCHHHHHhCCcEEEEEecCC---
Confidence            8999998854 8999999999889999999999999999999865411       2234556778999999887653   


Q ss_pred             hHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          303 RFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       303 ~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                        .+.++++++++.+|++++.++++|+|+++++||+.+.+++ .||+||++
T Consensus       316 --~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~-~gKvvi~~  363 (363)
T 3uog_A          316 --RRALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP-FGKVVIEF  363 (363)
T ss_dssp             --HHHHHHHHHHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC-SBEEEEEC
T ss_pred             --HHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCC-CccEEEeC
Confidence              3678999999999999999999999999999999999998 89999985

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=2.5e-51  Score=375.06  Aligned_cols=329  Identities=34%  Similarity=0.617  Sum_probs=279.0

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCcee--e
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVI--L   87 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~--~   87 (356)
                      ..+||+|++..+ +.+.++++.+++++.+.    |+|+++||||||.+++||++|++.+.+.  ..+.+|.++|++.  +
T Consensus         5 ~~~mka~v~~~~-~~g~~~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~d~~~~~~~--~~~~~p~~~G~e~g~~   77 (336)
T 4b7c_A            5 SQINRQYQLAQR-PSGLPGRDTFSFVETPL----GEPAEGQILVKNEYLSLDPAMRGWMNDA--RSYIPPVGIGEVMRAL   77 (336)
T ss_dssp             -CEEEEEEECSC-CSSSCCTTSEEEEEEEC----CCCCTTCEEEEEEEEECCTHHHHHHSCS--CCSSCCCCTTSBCCCE
T ss_pred             cccccEEEEEec-CCCCCCCCceEEEeccC----CCCCCCEEEEEEEEEEeCHHHHhhhhcc--cccCCCCCCCcccCCc
Confidence            356899999875 34455789999999876    7899999999999999999999888753  2334566677643  3


Q ss_pred             eeEEEEEeccCCCCCCCCCEEEeccCCeeeEEeecCCcccccCCCCCCCCccccc-cccCchhhhHHHHHHHhCCCCCCC
Q 042784           88 AFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYL-SSLGIPGFAAWVGIEVLGQPKSGS  166 (356)
Q Consensus        88 ~~G~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a-a~l~~~~~ta~~~l~~~~~~~~g~  166 (356)
                      ++|+|++  +++++|++||||+ ++|+|+||++++++.++++   |++++..+++ |+++++++|||+++.+.+++++|+
T Consensus        78 ~~G~V~~--~~v~~~~vGdrV~-~~G~~aey~~v~~~~~~~~---P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~  151 (336)
T 4b7c_A           78 GVGKVLV--SKHPGFQAGDYVN-GALGVQDYFIGEPKGFYKV---DPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGE  151 (336)
T ss_dssp             EEEEEEE--ECSTTCCTTCEEE-EECCSBSEEEECCTTCEEE---CTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTC
T ss_pred             eEEEEEe--cCCCCCCCCCEEe-ccCCceEEEEechHHeEEc---CCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCC
Confidence            5788877  5688999999999 9999999999999998665   9999777722 789999999999998789999999


Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKM  246 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~  246 (356)
                      +|||+|++|++|++++|+++..|++|+++++++++.+.+.+++|++.++|+.+ .++.+.+.+.+++++|++|||+|.+.
T Consensus       152 ~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~g~~~  230 (336)
T 4b7c_A          152 TVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKN-EDLAAGLKRECPKGIDVFFDNVGGEI  230 (336)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTT-SCHHHHHHHHCTTCEEEEEESSCHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCC-HHHHHHHHHhcCCCceEEEECCCcch
Confidence            99999999999999999999999999999999999999933999999999987 78889999988779999999999999


Q ss_pred             HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeE
Q 042784          247 LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVI  326 (356)
Q Consensus       247 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~  326 (356)
                      +..++++++++|+++.+|........ .......+...++.+++++.++...++...+++.++++++++.+|++++.+..
T Consensus       231 ~~~~~~~l~~~G~iv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~  309 (336)
T 4b7c_A          231 LDTVLTRIAFKARIVLCGAISQYNNK-EAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDI  309 (336)
T ss_dssp             HHHHHTTEEEEEEEEECCCGGGGC-------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred             HHHHHHHHhhCCEEEEEeecccccCC-cccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccceee
Confidence            99999999999999999986531100 00112335566788999999998877666677889999999999999999888


Q ss_pred             EeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          327 YYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       327 ~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +++|+++++||+.+.+++..||+|+++
T Consensus       310 ~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          310 VEGLETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             EECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             ecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            899999999999999999999999975

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=6.9e-52  Score=381.96  Aligned_cols=323  Identities=16%  Similarity=0.173  Sum_probs=271.6

Q ss_pred             ccccceeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCc
Q 042784            5 EEKLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQ   84 (356)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~   84 (356)
                      +.++.|++||++++..++..  ++++.+++++.+.    |+|+++||+|||.+++||++|++++.|.... ...|.++| 
T Consensus        15 ~~~~~m~~MkA~~~~~~~~~--~~~~~l~~~~~p~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G-   86 (363)
T 4dvj_A           15 TENLYFQSMKAVGYNKPAPI--TDDASLLDIELPK----PAPAGHDILVEVKAVSVNPVDYKVRRSTPPD-GTDWKVIG-   86 (363)
T ss_dssp             ----CCCEEEEEEBSSCCCT--TSTTSSEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHHHCCC---CCSBCCC-
T ss_pred             chhhhhheeEEEEEeccCCC--CCCceEEEeecCC----CCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC-CCCCCccc-
Confidence            45566788999999876421  3568899998866    7899999999999999999999999875432 23344455 


Q ss_pred             eeeeeEEEEEeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHh
Q 042784           85 VILAFGIARVIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVL  159 (356)
Q Consensus        85 ~~~~~G~v~~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~  159 (356)
                       +|++|+|+++|+++++|++||||+..     .|+|+||++++++.++++   |+++|+++ ||+++++++|||+++.+.
T Consensus        87 -~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~al~~~  161 (363)
T 4dvj_A           87 -YDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRK---PKTLDWAE-AAALPLTSITAWEAFFDR  161 (363)
T ss_dssp             -CCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSCBSEEEEEGGGCEEC---CTTSCHHH-HHTSHHHHHHHHHHHHTT
T ss_pred             -ceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCccceEEEEeCHHHeeEC---CCCCCHHH-HHhhhhHHHHHHHHHHHh
Confidence             59999999999999999999999942     489999999999988655   99999999 789999999999999888


Q ss_pred             CCCC-----CCCEEEEEcCCChHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC
Q 042784          160 GQPK-----SGSNVFVSAAAGGVGMFAGQLAKL-KGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       160 ~~~~-----~g~~VlV~g~~g~vG~~~i~la~~-~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ++++     +|++|||+||+|++|++++|+||. .|++|+++++++++.++++ ++|+++++|+.  .++.+.++++.++
T Consensus       162 ~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~-~lGad~vi~~~--~~~~~~v~~~~~~  238 (363)
T 4dvj_A          162 LDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK-SLGAHHVIDHS--KPLAAEVAALGLG  238 (363)
T ss_dssp             SCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-HTTCSEEECTT--SCHHHHHHTTCSC
T ss_pred             hCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCC--CCHHHHHHHhcCC
Confidence            8888     899999999999999999999998 5889999999999999999 89999999987  4688888888667


Q ss_pred             CceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc-------cchHH
Q 042784          234 GIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-------MDRFA  305 (356)
Q Consensus       234 ~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  305 (356)
                      ++|+||||+|++ .++.++++++++|+++.+|...           ..+...+..+++++.+......       .....
T Consensus       239 g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~-----------~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~  307 (363)
T 4dvj_A          239 APAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPS-----------AFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQG  307 (363)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCCS-----------SCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHH
T ss_pred             CceEEEECCCchhhHHHHHHHhcCCCEEEEECCCC-----------ccchHHHhhccceEEEEEeeccccccCcchhhHH
Confidence            999999999986 8899999999999999986432           1244566788899888654332       11225


Q ss_pred             HHHHHHHHHHHcCCeeeeeeEEe---ChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          306 DFTVEMESYIKEGKIRSKHVIYY---GVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       306 ~~l~~~~~~~~~g~i~~~~~~~~---~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      +.++++++++++|++++.++.++   +++++++||+.+.+++..||+|+++.
T Consensus       308 ~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~  359 (363)
T 4dvj_A          308 RLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVVIEGF  359 (363)
T ss_dssp             HHHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred             HHHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence            77899999999999999988876   99999999999999999999999975

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.4e-51  Score=376.34  Aligned_cols=321  Identities=18%  Similarity=0.218  Sum_probs=275.3

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +.+||++++..+     +.++.+++++.+.    |+|+++||||||.+++||++|++++.|...    .++|...|+|++
T Consensus         6 p~~mka~~~~~~-----g~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~----~~~P~i~G~e~~   72 (334)
T 3qwb_A            6 PEQQKVILIDEI-----GGYDVIKYEDYPV----PSISEEELLIKNKYTGVNYIESYFRKGIYP----CEKPYVLGREAS   72 (334)
T ss_dssp             CSEEEEEEESSS-----SSGGGEEEEEEEC----CCCCTTEEEEEEEEEECCTTHHHHHHTSSC----CCSSEECCSEEE
T ss_pred             chheEEEEEecC-----CCCceeEEEeccC----CCCCCCEEEEEEEEEecCHHHHHHHCCCCC----CCCCCccccceE
Confidence            456899998875     3467799998866    788999999999999999999999987543    233444445999


Q ss_pred             EEEEEeccCCCCCCCCCEEEe-ccCCeeeEEeec-CCcccccCCCCCCCCcccc--ccccCchhhhHHHHHHHhCCCCCC
Q 042784           90 GIARVIRSKDSKYSDGDIVLR-AFLPVAEYSLLP-CDLLTRKLDPASGIPFPDY--LSSLGIPGFAAWVGIEVLGQPKSG  165 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~-~~g~~a~~~~v~-~~~~~~~i~~P~~~s~~~~--aa~l~~~~~ta~~~l~~~~~~~~g  165 (356)
                      |+|+++|+++++|++||||++ ..|+|+||++++ ++.++++   |+++++++.  ||++++.++|||+++.+.+++++|
T Consensus        73 G~V~~vG~~v~~~~~GdrV~~~~~G~~aey~~v~~~~~~~~~---P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g  149 (334)
T 3qwb_A           73 GTVVAKGKGVTNFEVGDQVAYISNSTFAQYSKISSQGPVMKL---PKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKG  149 (334)
T ss_dssp             EEEEEECTTCCSCCTTCEEEEECSSCSBSEEEEETTSSEEEC---CTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred             EEEEEECCCCCCCCCCCEEEEeeCCcceEEEEecCcceEEEC---CCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCC
Confidence            999999999999999999993 469999999999 8887554   999999871  267788999999999888899999


Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCch
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGG  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~  244 (356)
                      ++|||+|++|++|++++|+|+..|++|++++++++++++++ ++|++.++|+++ .++.+.+.+.++ .++|++|||+|.
T Consensus       150 ~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~~~~~~-~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          150 DYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK-EYGAEYLINASK-EDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTT-SCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcEEEeCCC-chHHHHHHHHhCCCCceEEEECCCh
Confidence            99999999999999999999999999999999999999998 899999999987 788899999884 589999999999


Q ss_pred             hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc---chHHHHHHHHHHHHHcCCee
Q 042784          245 KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM---DRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       245 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~g~i~  321 (356)
                      ..++.++++++++|+++.+|...+.       ....+...++.+++++.++....+.   ..+.+.++++++++.+|+++
T Consensus       228 ~~~~~~~~~l~~~G~iv~~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~  300 (334)
T 3qwb_A          228 DTFEISLAALKRKGVFVSFGNASGL-------IPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLN  300 (334)
T ss_dssp             GGHHHHHHHEEEEEEEEECCCTTCC-------CCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHhccCCEEEEEcCCCCC-------CCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCcc
Confidence            9999999999999999999986541       1123455667899999987665543   23445678999999999999


Q ss_pred             eeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          322 SKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       322 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +.++++|+++++++||+.+.+++..||+|+++++
T Consensus       301 ~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          301 IKIYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ  334 (334)
T ss_dssp             CCEEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred             CceeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence            9999999999999999999999999999999864

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=2.8e-51  Score=375.88  Aligned_cols=316  Identities=17%  Similarity=0.208  Sum_probs=268.6

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +||++++..++.  ..+++.+++++.+.    |+|+++||||||.+++||++|++.+.|.   ....|..+|  +|++|+
T Consensus         2 ~MkA~~~~~~G~--~~~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~~p~i~G--~e~~G~   70 (346)
T 3fbg_A            2 SLKAIGFEQPFK--LSDGNLFKTFNLDI----PEPKVHEILVKIQSISVNPVDTKQRLMD---VSKAPRVLG--FDAIGV   70 (346)
T ss_dssp             CEEEEEBSSCCC--GGGCCCCEEEEECC----CCCCTTEEEEEEEEEEECHHHHHHTTSC---CSSSCBCCC--CCEEEE
T ss_pred             CcEEEEEEeccc--cCCCceeEeccccC----CCCCCCEEEEEEEEEEcCHHHHHHHhCC---CCCCCcCcC--CccEEE
Confidence            489999987631  12568899999866    7899999999999999999999998874   223344455  599999


Q ss_pred             EEEeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCC---
Q 042784           92 ARVIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPK---  163 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~---  163 (356)
                      |+++|+++++|++||||+..     .|+|+||++++++.++++   |+++++++ ||+++++++|||+++.+.++++   
T Consensus        71 V~~vG~~v~~~~~GdrV~~~~~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~  146 (346)
T 3fbg_A           71 VESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKA---PKNISAEQ-AVSLPLTGITAYETLFDVFGISRNR  146 (346)
T ss_dssp             EEEECTTCCSCCTTCEEEECCCTTSCCSSBSEEEEEGGGEEEC---CSSSCHHH-HTTSHHHHHHHHHHHHTTSCCCSSH
T ss_pred             EEEeCCCCCcCCCCCEEEEcCCCCCCcceeEEEEEChHHeEEC---CCCCCHHH-hhhcchhHHHHHHHHHHhcCCcccc
Confidence            99999999999999999942     599999999999988665   99999999 7899999999999998888898   


Q ss_pred             ---CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          164 ---SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       164 ---~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                         +|++|||+||+|++|++++|+|+..|++|+++++++++.++++ ++|++.+++++  .++.+.+++..++++|++||
T Consensus       147 ~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~--~~~~~~~~~~~~~g~Dvv~d  223 (346)
T 3fbg_A          147 NENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK-KMGADIVLNHK--ESLLNQFKTQGIELVDYVFC  223 (346)
T ss_dssp             HHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHH-HHTCSEEECTT--SCHHHHHHHHTCCCEEEEEE
T ss_pred             ccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEEECC--ccHHHHHHHhCCCCccEEEE
Confidence               9999999998999999999999999999999999999999999 89999999987  46888888886668999999


Q ss_pred             CCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc-------cchHHHHHHHHH
Q 042784          241 NVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-------MDRFADFTVEME  312 (356)
Q Consensus       241 ~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~  312 (356)
                      |+|.. .++.++++++++|+++.++....          ..+...+..+++++.+......       .....+.+++++
T Consensus       224 ~~g~~~~~~~~~~~l~~~G~iv~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (346)
T 3fbg_A          224 TFNTDMYYDDMIQLVKPRGHIATIVAFEN----------DQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDIT  293 (346)
T ss_dssp             SSCHHHHHHHHHHHEEEEEEEEESSCCSS----------CBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhccCCEEEEECCCCC----------CCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHH
Confidence            99986 57999999999999998864321          1244456778899888654431       123357789999


Q ss_pred             HHHHcCCeeeeeeEEe---ChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          313 SYIKEGKIRSKHVIYY---GVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       313 ~~~~~g~i~~~~~~~~---~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +++++|++++.++++|   +++++++||+.+.+++..||+|+++.+
T Consensus       294 ~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          294 NKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE  339 (346)
T ss_dssp             HHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred             HHHHCCCEECCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence            9999999999998887   999999999999999999999999875

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=2.3e-51  Score=373.44  Aligned_cols=316  Identities=19%  Similarity=0.216  Sum_probs=270.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..+     ++++.+++++.+.    |+|+++||+|||.+++||++|++++.|....   +++|...|+|++|+|
T Consensus         2 MkA~~~~~~-----g~~~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~p~v~G~e~~G~V   69 (325)
T 3jyn_A            2 AKRIQFSTV-----GGPEVLEYVDFEP----EAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA---PFLPSGLGAEGAGVV   69 (325)
T ss_dssp             EEEEEBSSC-----SSGGGCEEEEECC----CCCCTTEEEEEEEEEECCHHHHHHHHTSSCC---SSSSBCCCCCEEEEE
T ss_pred             cEEEEEecC-----CCcceeEEeecCC----CCCCCCEEEEEEEEEecCHHHHHHHCCCCCC---CCCCCCCCceeEEEE
Confidence            788888865     4567899998865    7899999999999999999999999975432   234444555999999


Q ss_pred             EEeccCCCCCCCCCEEEec---cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEE
Q 042784           93 RVIRSKDSKYSDGDIVLRA---FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVF  169 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  169 (356)
                      +++|+++++|++||||++.   .|+|+||++++++.++++   |+++++++ ||++++.++|||+++.+.+++++|++||
T Consensus        70 ~~vG~~v~~~~~GdrV~~~~~~~G~~aey~~v~~~~~~~~---P~~~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  145 (325)
T 3jyn_A           70 EAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKL---ADSVSFEQ-AAALMLKGLTVQYLLRQTYQVKPGEIIL  145 (325)
T ss_dssp             EEECTTCCSCCTTCEEEESSSSSCCSBSEEEEEGGGEEEC---CTTSCHHH-HHHHHHHHHHHHHHHHTTSCCCTTCEEE
T ss_pred             EEECCCCCCCCCCCEEEEecCCCccccceEEecHHHeEEC---CCCCCHHH-HhhhhhhHHHHHHHHHHhcCCCCCCEEE
Confidence            9999999999999999943   599999999999988665   99999999 7889999999999999889999999999


Q ss_pred             EEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHH
Q 042784          170 VSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLE  248 (356)
Q Consensus       170 V~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~  248 (356)
                      |+|++|++|++++|+|+..|++|+++++++++.+.++ ++|++.++|+.+ .++.+.+.+.++ +++|++|||+|.+.+.
T Consensus       146 V~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~Dvvid~~g~~~~~  223 (325)
T 3jyn_A          146 FHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-ALGAWETIDYSH-EDVAKRVLELTDGKKCPVVYDGVGQDTWL  223 (325)
T ss_dssp             ESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETTT-SCHHHHHHHHTTTCCEEEEEESSCGGGHH
T ss_pred             EEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCC-ccHHHHHHHHhCCCCceEEEECCChHHHH
Confidence            9999999999999999999999999999999999999 899999999987 788899999885 4899999999999999


Q ss_pred             HHHHhcccCCEEEEEecccccccccccccchhhhhhhhcc-ceEEEEEecccc---cchHHHHHHHHHHHHHcCCeeeee
Q 042784          249 AVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGK-EVKMEGFMIGSH---MDRFADFTVEMESYIKEGKIRSKH  324 (356)
Q Consensus       249 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~g~i~~~~  324 (356)
                      .++++++++|+++.+|...+..       ...+...++.+ .+++.+..+..+   ...+.+.++++++++.+|++++.+
T Consensus       224 ~~~~~l~~~G~iv~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i  296 (325)
T 3jyn_A          224 TSLDSVAPRGLVVSFGNASGPV-------SGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVDG  296 (325)
T ss_dssp             HHHTTEEEEEEEEECCCTTCCC-------CSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             HHHHHhcCCCEEEEEecCCCCC-------CCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCcc
Confidence            9999999999999999865411       12233344445 566665544332   234556778999999999999999


Q ss_pred             eEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          325 VIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       325 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +++|+++++++||+.+.+++..||+|+.+
T Consensus       297 ~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          297 IEQYALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             CEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             ccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            99999999999999999999999999974

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.7e-51  Score=376.44  Aligned_cols=324  Identities=17%  Similarity=0.224  Sum_probs=262.4

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +||++++..+     +.++.+++++.+.    |+|+++||||||.+++||++|++++.|........|+.+|  +|++|+
T Consensus         3 ~mka~~~~~~-----g~~~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G--~e~~G~   71 (349)
T 4a27_A            3 EMRAVVLAGF-----GGLNKLRLFRKAM----PEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPG--FECSGI   71 (349)
T ss_dssp             CEEEEEECSS-----SSGGGEEEEEECC----CCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCC--SEEEEE
T ss_pred             eeEEEEEccC-----CCcceeEEEecCC----CCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCcccc--ceeEEE
Confidence            5899999865     4567899998865    7899999999999999999999999986433333444555  599999


Q ss_pred             EEEeccCCCCCCCCCEEEe--ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEE
Q 042784           92 ARVIRSKDSKYSDGDIVLR--AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVF  169 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~--~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  169 (356)
                      |+++|+++++|++||||+.  ..|+|+||++++++.++++   |+++++++ ||+++++++|||+++.+.+++++|++||
T Consensus        72 V~~vG~~v~~~~~GdrV~~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  147 (349)
T 4a27_A           72 VEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKI---PDDMSFSE-AAAFPMNFVTAYVMLFEVANLREGMSVL  147 (349)
T ss_dssp             EEEECTTCCSCCTTCEEEEECSSCCSBSEEEEEGGGEEEC---CTTSCHHH-HHTSHHHHHHHHHHHHTTSCCCTTCEEE
T ss_pred             EEEeCCCCCCCCCCCEEEEecCCCcceEEEEecHHHeEEC---CCCCCHHH-HHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            9999999999999999992  2589999999999988665   99999999 7889999999999998889999999999


Q ss_pred             EEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHH
Q 042784          170 VSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLE  248 (356)
Q Consensus       170 V~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~  248 (356)
                      |+|++|++|++++|+|+.+| ++|++++ ++++.+.++  +|+++++| .+ .++.+.+++++++++|+||||+|++.++
T Consensus       148 V~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga~~~~~-~~-~~~~~~~~~~~~~g~Dvv~d~~g~~~~~  222 (349)
T 4a27_A          148 VHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSVTHLFD-RN-ADYVQEVKRISAEGVDIVLDCLCGDNTG  222 (349)
T ss_dssp             ESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGSSEEEE-TT-SCHHHHHHHHCTTCEEEEEEECC-----
T ss_pred             EEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCCcEEEc-CC-ccHHHHHHHhcCCCceEEEECCCchhHH
Confidence            99999999999999999996 5999988 777888775  89999999 54 7899999999888999999999998889


Q ss_pred             HHHHhcccCCEEEEEecccccccccc---------cccchhhhhhhhccceEEEEEeccccc------chHHHHHHHHHH
Q 042784          249 AVLNHVNVHARIILCGMISQYNKVWT---------ERDGVRNLLNMIGKEVKMEGFMIGSHM------DRFADFTVEMES  313 (356)
Q Consensus       249 ~~~~~l~~~G~~v~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~  313 (356)
                      .++++++++|+++.+|..........         ......+...++.++.++.++....+.      ....+.++++++
T Consensus       223 ~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~  302 (349)
T 4a27_A          223 KGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIG  302 (349)
T ss_dssp             --CTTEEEEEEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHH
Confidence            99999999999999997542110000         000113445567789999998764432      123678999999


Q ss_pred             HHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          314 YIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       314 ~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      ++++|++++.++++|+++++++||+.+.+++..||+|+++++
T Consensus       303 l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~~  344 (349)
T 4a27_A          303 LYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEK  344 (349)
T ss_dssp             HHHTTSCCCCEEEEECGGGHHHHHHHHHTTCCSSEEEEETTC
T ss_pred             HHHCCCccccccceECHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            999999999999999999999999999999999999999875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=9.2e-51  Score=371.72  Aligned_cols=319  Identities=16%  Similarity=0.193  Sum_probs=268.1

Q ss_pred             eeeeeEEEecccCCCCCCC-CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           11 VESKEWYISAYASDGVPTS-DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      ++||+|++..++     .| +.+++++.+.    |+|+++||||||.+++||++|++.+.|.+......|..+|+  |++
T Consensus         3 ~~mka~~~~~~g-----~p~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~--E~~   71 (340)
T 3gms_A            3 LHGKLIQFHKFG-----NPKDVLQVEYKNI----EPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGY--EGV   71 (340)
T ss_dssp             CEEEEEEESSCS-----CHHHHEEEEEEEC----CCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCS--CCE
T ss_pred             cccEEEEEecCC-----CchheEEEEecCC----CCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCc--ceE
Confidence            369999999874     33 4589999866    78899999999999999999999999865433344455554  999


Q ss_pred             EEEEEeccCCCCCCCCCEEEe--ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           90 GIARVIRSKDSKYSDGDIVLR--AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~--~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      |+|+++|+++++|++||||+.  ..|+|+||++++++.++++   |+++|+++ ||++++.++|||+++.+.+++++|++
T Consensus        72 G~V~~vG~~v~~~~vGdrV~~~~~~G~~aey~~v~~~~~~~v---P~~l~~~~-aa~l~~~~~ta~~~~~~~~~~~~g~~  147 (340)
T 3gms_A           72 GIVENVGAFVSRELIGKRVLPLRGEGTWQEYVKTSADFVVPI---PDSIDDFT-AAQMYINPLTAWVTCTETLNLQRNDV  147 (340)
T ss_dssp             EEEEEECTTSCGGGTTCEEEECSSSCSSBSEEEEEGGGEEEC---CTTSCHHH-HTTSSHHHHHHHHHHHTTSCCCTTCE
T ss_pred             EEEEEeCCCCCCCCCCCEEEecCCCccceeEEEcCHHHeEEC---CCCCCHHH-HhhhcchHHHHHHHHHHhcccCCCCE
Confidence            999999999999999999993  3599999999999988665   99999999 78999999999999988899999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC-CceEEEECCchhh
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN-GIDVYLDNVGGKM  246 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~~  246 (356)
                      |||+|++|++|++++|+|+..|++|+++++++++.++++ ++|++.++|+.+ .++.+.+.+++++ ++|++|||+|...
T Consensus       148 VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lga~~~~~~~~-~~~~~~~~~~~~~~g~Dvvid~~g~~~  225 (340)
T 3gms_A          148 LLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL-RLGAAYVIDTST-APLYETVMELTNGIGADAAIDSIGGPD  225 (340)
T ss_dssp             EEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEEETTT-SCHHHHHHHHTTTSCEEEEEESSCHHH
T ss_pred             EEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hCCCcEEEeCCc-ccHHHHHHHHhCCCCCcEEEECCCChh
Confidence            999999889999999999999999999999999999999 899999999987 7888999998854 8999999999988


Q ss_pred             HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEEEEEeccccc-----chHHHHHHHHHHHHHcCCe
Q 042784          247 LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKMEGFMIGSHM-----DRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       247 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~g~i  320 (356)
                      ...++++++++|+++.+|...+..         .+...+. ..++.+..+....+.     ....+.++++++++.+|++
T Consensus       226 ~~~~~~~l~~~G~iv~~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l  296 (340)
T 3gms_A          226 GNELAFSLRPNGHFLTIGLLSGIQ---------VNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQL  296 (340)
T ss_dssp             HHHHHHTEEEEEEEEECCCTTSCC---------CCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHhcCCCEEEEEeecCCCC---------CCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCC
Confidence            788889999999999999865411         1111111 345566555443221     2345789999999999999


Q ss_pred             ee-eeeEEeChhhHHHHHHHHHcCCC-cceEEEEecC
Q 042784          321 RS-KHVIYYGVESFLESLGSLFSSSN-IGKVVIQVKA  355 (356)
Q Consensus       321 ~~-~~~~~~~~~~~~~a~~~~~~~~~-~gkvvi~~~~  355 (356)
                      ++ .++++|+++++++||+.+.+++. .||+|+++.+
T Consensus       297 ~~~~i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~  333 (340)
T 3gms_A          297 RFMKVHSTYELADVKAAVDVVQSAEKTKGKVFLTSYE  333 (340)
T ss_dssp             CCCCEEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred             ccccccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            97 57889999999999999999874 5999999865

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=1.8e-50  Score=369.85  Aligned_cols=308  Identities=18%  Similarity=0.186  Sum_probs=264.5

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      .||++++..++       +++++++.+.    |+|+++||||||.+++||++|++.+.|.+......|..+  |+|++|+
T Consensus         2 ~MkA~~~~~~g-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~--G~E~~G~   68 (340)
T 3s2e_A            2 MMKAAVVRAFG-------APLTIDEVPV----PQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIP--GHEGVGY   68 (340)
T ss_dssp             EEEEEEBCSTT-------SCCEEEEEEC----CCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCC--CSEEEEE
T ss_pred             ceEEEEEecCC-------CCCEEEEccC----CCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCccc--CCcceEE
Confidence            38899888653       4589998866    789999999999999999999999998643322334444  4599999


Q ss_pred             EEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCcccc
Q 042784           92 ARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDY  141 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~  141 (356)
                      |+++|+++++|++||||++.                              .|+|+||++++++.++++   |+++|+++ 
T Consensus        69 V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-  144 (340)
T 3s2e_A           69 VSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLL---PDKVGFVE-  144 (340)
T ss_dssp             EEEECSSCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEEC---CTTSCHHH-
T ss_pred             EEEECCCCCcCCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEEC---CCCCCHHH-
Confidence            99999999999999999522                              489999999999988665   99999999 


Q ss_pred             ccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          142 LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       142 aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      ||++++++.|||+++. .+++++|++|||+|+ |++|++++|+|+.+|++|+++++++++.++++ ++|+++++|+++ .
T Consensus       145 aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~i~~~~-~  220 (340)
T 3s2e_A          145 IAPILCAGVTVYKGLK-VTDTRPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RLGAEVAVNARD-T  220 (340)
T ss_dssp             HGGGGTHHHHHHHHHH-TTTCCTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEETTT-S
T ss_pred             hhcccchhHHHHHHHH-HcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HcCCCEEEeCCC-c
Confidence            7899999999999995 678999999999997 99999999999999999999999999999999 999999999987 6


Q ss_pred             hHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc
Q 042784          222 SFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH  300 (356)
Q Consensus       222 ~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (356)
                      ++.+.+++..+ ++|++||++|. ..++.++++++++|+++.+|.....        ...+...++.+++++.++...+ 
T Consensus       221 ~~~~~~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~--------~~~~~~~~~~~~~~i~g~~~~~-  290 (340)
T 3s2e_A          221 DPAAWLQKEIG-GAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGD--------FGTPIFDVVLKGITIRGSIVGT-  290 (340)
T ss_dssp             CHHHHHHHHHS-SEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSE--------EEEEHHHHHHTTCEEEECCSCC-
T ss_pred             CHHHHHHHhCC-CCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCC--------CCCCHHHHHhCCeEEEEEecCC-
Confidence            78888887434 89999999985 5899999999999999999876531        2234556678999999876653 


Q ss_pred             cchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          301 MDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       301 ~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                          .+.++++++++.+|++++.+ +.|+|+++++||+.+.+++..||+|+++++
T Consensus       291 ----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          291 ----RSDLQESLDFAAHGDVKATV-STAKLDDVNDVFGRLREGKVEGRVVLDFSR  340 (340)
T ss_dssp             ----HHHHHHHHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred             ----HHHHHHHHHHHHhCCCCceE-EEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence                36689999999999999865 478999999999999999999999999864

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=2.2e-51  Score=372.87  Aligned_cols=309  Identities=22%  Similarity=0.221  Sum_probs=258.2

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCC--CCccCCCccCceee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTND--GLYFPQFNLNQVIL   87 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~~~~   87 (356)
                      |++||++++..+     +.++.+++++.+.    |+|+++||||||.+++||++|++++.|...  .....++|...|+|
T Consensus         4 m~~Mka~~~~~~-----g~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E   74 (321)
T 3tqh_A            4 MKEMKAIQFDQF-----GPPKVLKLVDTPT----PEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYD   74 (321)
T ss_dssp             -CEEEEEEESSS-----CSGGGEEEEEEEC----CCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCE
T ss_pred             cccceEEEEccC-----CCcceeEEEecCC----CCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccce
Confidence            346999999876     3557799999866    788999999999999999999999986210  01123344444559


Q ss_pred             eeEEEEEeccCCCCCCCCCEEEec------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCC
Q 042784           88 AFGIARVIRSKDSKYSDGDIVLRA------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQ  161 (356)
Q Consensus        88 ~~G~v~~vg~~v~~~~~Gd~V~~~------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~  161 (356)
                      ++|+|+++|+++++|++||||+..      .|+|+||++++++.++++   |+++++++ ||+++++++|||+++ +.++
T Consensus        75 ~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~al-~~~~  149 (321)
T 3tqh_A           75 FSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQK---LEKLSFLQ-AASLPTAGLTALQAL-NQAE  149 (321)
T ss_dssp             EEEEEEEECTTCCSCCTTCEEEEECSTTTCCCCSBSEEEECGGGEEEC---CTTSCHHH-HHHSHHHHHHHHHHH-HHTT
T ss_pred             eEEEEEEeCCCCCCCCCCCEEEEccCCCCCCCcceEEEEecHHHhccC---CCCCCHHH-HhhhhhHHHHHHHHH-HhcC
Confidence            999999999999999999999932      389999999999988665   99999999 789999999999999 6899


Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhh-HHHHHHHHCCCCceEEEE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS-FDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~-~~~~i~~~~~~~~d~vld  240 (356)
                      +++|++|||+||+|++|++++|+|+..|++|++++ ++++.++++ ++|+++++|+++ .+ +.+.+     +++|+|||
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~-~lGa~~~i~~~~-~~~~~~~~-----~g~D~v~d  221 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLK-ALGAEQCINYHE-EDFLLAIS-----TPVDAVID  221 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHH-HHTCSEEEETTT-SCHHHHCC-----SCEEEEEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHH-HcCCCEEEeCCC-cchhhhhc-----cCCCEEEE
Confidence            99999999999889999999999999999999998 677788888 899999999987 44 54443     57999999


Q ss_pred             CCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCe
Q 042784          241 NVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       241 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i  320 (356)
                      |+|++....++++++++|+++.+|.....          ........+++++.++....    ..+.++++++++.+|++
T Consensus       222 ~~g~~~~~~~~~~l~~~G~iv~~g~~~~~----------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~g~l  287 (321)
T 3tqh_A          222 LVGGDVGIQSIDCLKETGCIVSVPTITAG----------RVIEVAKQKHRRAFGLLKQF----NIEELHYLGKLVSEDKL  287 (321)
T ss_dssp             SSCHHHHHHHGGGEEEEEEEEECCSTTHH----------HHHHHHHHTTCEEECCCCCC----CHHHHHHHHHHHHTTSS
T ss_pred             CCCcHHHHHHHHhccCCCEEEEeCCCCch----------hhhhhhhhcceEEEEEecCC----CHHHHHHHHHHHHCCCc
Confidence            99998889999999999999999765431          11223456778887743221    24678999999999999


Q ss_pred             eeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          321 RSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       321 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      ++.++++|+|+++++||+.+.+++..||+|++++
T Consensus       288 ~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  321 (321)
T 3tqh_A          288 RIEISRIFQLSEAVTAHELLETGHVRGKLVFKVR  321 (321)
T ss_dssp             CCCEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             ccccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence            9999999999999999999999999999999874

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=1.1e-50  Score=373.08  Aligned_cols=323  Identities=19%  Similarity=0.251  Sum_probs=268.2

Q ss_pred             cceeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceee
Q 042784            8 LETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVIL   87 (356)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~   87 (356)
                      ..|.+||++.+..+     +.++.+++++.+.    |+|+++||||||.+++||++|++...|.+......|..+|  +|
T Consensus        18 ~~~~~Mka~~~~~~-----g~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G--~E   86 (354)
T 2j8z_A           18 LYFQSMLAVHFDKP-----GGPENLYVKEVAK----PSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILG--LE   86 (354)
T ss_dssp             ---CEEEEEEESSC-----SSGGGEEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSC--SE
T ss_pred             cchhheeEEEEccC-----CCccceEEeecCC----CCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccc--ee
Confidence            34567999988764     3456799998866    7789999999999999999999999875432222234444  59


Q ss_pred             eeEEEEEeccCC-CCCCCCCEEEe--ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCC
Q 042784           88 AFGIARVIRSKD-SKYSDGDIVLR--AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKS  164 (356)
Q Consensus        88 ~~G~v~~vg~~v-~~~~~Gd~V~~--~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~  164 (356)
                      ++|+|+++|+++ ++|++||||+.  ..|+|+||++++++.++++   |+++|+++ ||+++++++|||+++.+.+++++
T Consensus        87 ~~G~V~~vG~~v~~~~~vGdrV~~~~~~G~~aey~~v~~~~~~~i---P~~ls~~~-aa~l~~~~~tA~~al~~~~~~~~  162 (354)
T 2j8z_A           87 ASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPI---PEGLTLTQ-AAAIPEAWLTAFQLLHLVGNVQA  162 (354)
T ss_dssp             EEEEEEEECSCC--CCCTTCEEEEECSSCCSBSEEEEEGGGEEEC---CTTCCHHH-HTTSHHHHHHHHHHHTTTSCCCT
T ss_pred             eEEEEEEECCCcCCCCCCCCEEEEecCCCcceeEEEeCHHHcEEC---CCCCCHHH-HHhccchHHHHHHHHHHhcCCCC
Confidence            999999999999 99999999993  2399999999999988655   99999999 78999999999999977889999


Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g  243 (356)
                      |++|||+||+|++|++++++++..|++|+++++++++.+.++ ++|++.++|+.+ .++.+.+.+.++ +++|++|||+|
T Consensus       163 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~G  240 (354)
T 2j8z_A          163 GDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KLGAAAGFNYKK-EDFSEATLKFTKGAGVNLILDCIG  240 (354)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTCSEEEETTT-SCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecCC-hHHHHHHHHHhcCCCceEEEECCC
Confidence            999999999999999999999999999999999999999997 899998999887 678888888774 48999999999


Q ss_pred             hhhHHHHHHhcccCCEEEEEecccccccccccccchhhh-hhhhccceEEEEEecccccchH-----HHHHHHHHHHHHc
Q 042784          244 GKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNL-LNMIGKEVKMEGFMIGSHMDRF-----ADFTVEMESYIKE  317 (356)
Q Consensus       244 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~  317 (356)
                      ...+..++++++++|+++.+|...+..       ...+. ..++.+++++.++........+     .+.++++++++.+
T Consensus       241 ~~~~~~~~~~l~~~G~iv~~G~~~~~~-------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  313 (354)
T 2j8z_A          241 GSYWEKNVNCLALDGRWVLYGLMGGGD-------INGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFST  313 (354)
T ss_dssp             GGGHHHHHHHEEEEEEEEECCCTTCSC-------CCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC
T ss_pred             chHHHHHHHhccCCCEEEEEeccCCCc-------cCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999764311       11234 5567889999998665432211     2234568889999


Q ss_pred             C---CeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          318 G---KIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       318 g---~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      |   ++++.++++|+|+++++||+.+.+++..||+|++++
T Consensus       314 g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  353 (354)
T 2j8z_A          314 EGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELP  353 (354)
T ss_dssp             ---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred             CCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence            9   999999999999999999999998888899999875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.5e-50  Score=368.91  Aligned_cols=316  Identities=22%  Similarity=0.336  Sum_probs=266.6

Q ss_pred             eeeeEEEecccCCCCCCCCCeEE-EEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKL-RSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      +||++++..+     +.++.+++ ++.+.    |+|+++||+|||.+++||++|++++.|.+......|..+|  +|++|
T Consensus        29 ~Mka~~~~~~-----g~~~~l~~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G--~E~~G   97 (351)
T 1yb5_A           29 LMRAVRVFEF-----GGPEVLKLRSDIAV----PIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPG--SDVAG   97 (351)
T ss_dssp             EEEEEEESSC-----SSGGGEEEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCC--SCEEE
T ss_pred             eEEEEEEccC-----CCcceeEEeeecCC----CCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCC--ceeEE
Confidence            4788887764     35577888 78765    7789999999999999999999998875422222344455  59999


Q ss_pred             EEEEeccCCCCCCCCCEEEec---cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCE
Q 042784           91 IARVIRSKDSKYSDGDIVLRA---FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSN  167 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  167 (356)
                      +|+++|+++++|++||||+..   .|+|+||++++++.++++   |+++++++ ||+++++++|||+++.+.+++++|++
T Consensus        98 ~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~---P~~l~~~~-aA~l~~~~~ta~~al~~~~~~~~g~~  173 (351)
T 1yb5_A           98 VIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKL---PEKLDFKQ-GAAIGIPYFTAYRALIHSACVKAGES  173 (351)
T ss_dssp             EEEEECTTCTTCCTTCEEEESCCSSCSSBSEEEEEGGGEEEC---CTTSCHHH-HTTTHHHHHHHHHHHHTTSCCCTTCE
T ss_pred             EEEEECCCCCCCCCCCEEEEeCCCCCcceeEEEECHHHeEEC---CCCCCHHH-HHhhhhHHHHHHHHHHHhhCCCCcCE
Confidence            999999999999999999942   499999999999988655   99999999 78999999999999987899999999


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhh
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKM  246 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~  246 (356)
                      |||+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.++|+.+ .++.+.+.+.++ +++|++|||+|.+.
T Consensus       174 vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~~d~~~-~~~~~~~~~~~~~~~~D~vi~~~G~~~  251 (351)
T 1yb5_A          174 VLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHEVFNHRE-VNYIDKIKKYVGEKGIDIIIEMLANVN  251 (351)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTS-TTHHHHHHHHHCTTCEEEEEESCHHHH
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHH-HcCCCEEEeCCC-chHHHHHHHHcCCCCcEEEEECCChHH
Confidence            999999999999999999999999999999999999988 899999999887 678888888764 48999999999998


Q ss_pred             HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc-cchHHHHHHHHHHHHHcCCeeeeee
Q 042784          247 LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKEGKIRSKHV  325 (356)
Q Consensus       247 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~g~i~~~~~  325 (356)
                      +..++++++++|+++.+|....         ...+...++.+++++.++.+... ...+.+.++.+.+++.+|++++.++
T Consensus       252 ~~~~~~~l~~~G~iv~~g~~~~---------~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~  322 (351)
T 1yb5_A          252 LSKDLSLLSHGGRVIVVGSRGT---------IEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIG  322 (351)
T ss_dssp             HHHHHHHEEEEEEEEECCCCSC---------EEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             HHHHHHhccCCCEEEEEecCCC---------CccCHHHHHhCCcEEEEEEeecCCHHHHHHHHHHHHHHHHCCCccCccc
Confidence            9999999999999999986421         11233456788999998865432 2345667788888999999999999


Q ss_pred             EEeChhhHHHHHHH-HHcCCCcceEEEEe
Q 042784          326 IYYGVESFLESLGS-LFSSSNIGKVVIQV  353 (356)
Q Consensus       326 ~~~~~~~~~~a~~~-~~~~~~~gkvvi~~  353 (356)
                      ++|+|+++++||+. +.+++..||+|+++
T Consensus       323 ~~~~l~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          323 SQYPLEKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             EEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             eEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            99999999999998 66667789999974

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=8.3e-51  Score=372.22  Aligned_cols=314  Identities=17%  Similarity=0.262  Sum_probs=265.0

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +.+||++++..++       +.+++++++.    |+|+++||||||.+++||++|++++.|..... ..++|...|+|++
T Consensus         5 ~~~mka~~~~~~~-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~~P~v~G~E~~   72 (343)
T 3gaz_A            5 TPTMIAAVVEEAN-------GPFVLRKLAR----PQPAPGQVLVQIEASGTNPLDAKIRAGEAPHA-QQPLPAILGMDLA   72 (343)
T ss_dssp             -CEEEEEEECSTT-------CCEEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHTTCCGGG-CCCSSBCCCCEEE
T ss_pred             chhheEEEEecCC-------CceEEEeccC----CCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCC-CCCCCcccCcceE
Confidence            4679999998753       3389998866    78999999999999999999999998743211 1334455555999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec-------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCC
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA-------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQP  162 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~-------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~  162 (356)
                      |+|+++|+++++|++||||+.+       .|+|+||++++++.++++   |+++++++ ||+++++++|||+++.+.+++
T Consensus        73 G~V~~vG~~v~~~~vGdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~---P~~~~~~~-aa~l~~~~~ta~~~l~~~~~~  148 (343)
T 3gaz_A           73 GTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASK---PAALTMRQ-ASVLPLVFITAWEGLVDRAQV  148 (343)
T ss_dssp             EEEEEECTTCCSCCTTCEEEEECCSSTTCCCSSBSEEEEEGGGEEEC---CTTSCHHH-HHTSHHHHHHHHHHHTTTTCC
T ss_pred             EEEEEECCCCCCCCCCCEEEEEeCCCCCCCcceeeEEEecHHHeeeC---CCCCCHHH-HHHhhhhHHHHHHHHHHhcCC
Confidence            9999999999999999999943       489999999999988665   99999999 789999999999999778999


Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEEC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDN  241 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~  241 (356)
                      ++|++|||+||+|++|++++|+|+..|++|+++ .++++.++++ ++|++. +| .+ .++.+.+++.++ .++|++|||
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~-~lGa~~-i~-~~-~~~~~~~~~~~~~~g~D~vid~  223 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVR-DLGATP-ID-AS-REPEDYAAEHTAGQGFDLVYDT  223 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHH-HHTSEE-EE-TT-SCHHHHHHHHHTTSCEEEEEES
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHH-HcCCCE-ec-cC-CCHHHHHHHHhcCCCceEEEEC
Confidence            999999999999999999999999999999999 7999999998 899987 77 44 678888888875 589999999


Q ss_pred             CchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc------cchHHHHHHHHHHHH
Q 042784          242 VGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH------MDRFADFTVEMESYI  315 (356)
Q Consensus       242 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~  315 (356)
                      +|.+.+..++++++++|+++.+|....           .+...++.+++++.++.....      .....+.++++++++
T Consensus       224 ~g~~~~~~~~~~l~~~G~iv~~g~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~  292 (343)
T 3gaz_A          224 LGGPVLDASFSAVKRFGHVVSCLGWGT-----------HKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALV  292 (343)
T ss_dssp             SCTHHHHHHHHHEEEEEEEEESCCCSC-----------CCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhcCCeEEEEcccCc-----------cccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHH
Confidence            999999999999999999999987542           133455678999988754321      123457899999999


Q ss_pred             HcCCeeeeee-EEeChhhHHHHHHHHHcCCC----cceEEEEecC
Q 042784          316 KEGKIRSKHV-IYYGVESFLESLGSLFSSSN----IGKVVIQVKA  355 (356)
Q Consensus       316 ~~g~i~~~~~-~~~~~~~~~~a~~~~~~~~~----~gkvvi~~~~  355 (356)
                      ++|++++.++ ++|+|+++++||+.+.+++.    +||+|+++..
T Consensus       293 ~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~~  337 (343)
T 3gaz_A          293 QTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVEG  337 (343)
T ss_dssp             HTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC-
T ss_pred             HCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccceEEEEecc
Confidence            9999999999 79999999999999988754    7899999764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=4.2e-50  Score=372.47  Aligned_cols=316  Identities=14%  Similarity=0.176  Sum_probs=265.2

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +.+||++++..++       ++++++++++    |+|+++||||||.+++||++|++++.|... ....|..+|  +|++
T Consensus         6 ~~tmkA~v~~~~~-------~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~~P~v~G--hE~~   71 (378)
T 3uko_A            6 VITCKAAVAYEPN-------KPLVIEDVQV----APPQAGEVRIKILYTALCHTDAYTWSGKDP-EGLFPCILG--HEAA   71 (378)
T ss_dssp             CEEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEEECHHHHHHHTTCCT-TCCSSBCCC--CEEE
T ss_pred             ceeeEEEEEecCC-------CccEEEEecC----CCCCCCeEEEEEEEeecCHHHHHHhcCCCC-CCCCCccCC--ccce
Confidence            4568999988653       4599999877    788999999999999999999999997532 222344444  5999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec---------------------------------------------------cCCeeeE
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA---------------------------------------------------FLPVAEY  118 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~---------------------------------------------------~g~~a~~  118 (356)
                      |+|+++|+++++|++||||+..                                                   .|+|+||
T Consensus        72 G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey  151 (378)
T 3uko_A           72 GIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQY  151 (378)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSE
T ss_pred             EEEEEeCCCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeE
Confidence            9999999999999999999831                                                   1589999


Q ss_pred             EeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeC
Q 042784          119 SLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTG  197 (356)
Q Consensus       119 ~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~  197 (356)
                      ++++++.++++   |+++|+++ ||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|+++++
T Consensus       152 ~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~  226 (378)
T 3uko_A          152 TVVHDVSVAKI---DPTAPLDK-VCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDI  226 (378)
T ss_dssp             EEEEGGGEEEC---CTTSCHHH-HGGGGTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECS
T ss_pred             EEechhheEEC---CCCCCHHH-hhhhhhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Confidence            99999988665   99999999 78999999999999988899999999999998 9999999999999999 8999999


Q ss_pred             ChHHHHHHHHHhCCCceeecCC-hhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEecccccccccc
Q 042784          198 SDDNVKLLKEEFGYDDAFNYNS-EMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVWT  274 (356)
Q Consensus       198 s~~~~~~~~~~~g~~~v~~~~~-~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~  274 (356)
                      +++++++++ ++|+++++|+.+ ..++.+.+++++++++|+||||+|. ..++.++++++++ |+++.+|......    
T Consensus       227 ~~~~~~~a~-~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~----  301 (378)
T 3uko_A          227 DSKKYETAK-KFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ----  301 (378)
T ss_dssp             CTTHHHHHH-TTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTC----
T ss_pred             CHHHHHHHH-HcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCC----
Confidence            999999999 999999999873 2679999999997799999999998 5889999999996 9999999754311    


Q ss_pred             cccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEE
Q 042784          275 ERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQ  352 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  352 (356)
                        ....+...++ +++++.++..+.+.  ..+.+.++++++.+|+++  +.++++|+|+++++||+.+.+++.. |+|++
T Consensus       302 --~~~~~~~~~~-~~~~i~g~~~~~~~--~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~-Kvvi~  375 (378)
T 3uko_A          302 --EISTRPFQLV-TGRVWKGTAFGGFK--SRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL-RCVLD  375 (378)
T ss_dssp             --CEEECTHHHH-TTCEEEECSGGGCC--HHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS-EEEEE
T ss_pred             --ccccCHHHHh-cCcEEEEEEecCCC--chHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCce-EEEEe
Confidence              1112233333 37888887665432  346788999999999887  4688899999999999999888765 99999


Q ss_pred             ecC
Q 042784          353 VKA  355 (356)
Q Consensus       353 ~~~  355 (356)
                      +++
T Consensus       376 ~~~  378 (378)
T 3uko_A          376 TSK  378 (378)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            864

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=7.2e-50  Score=367.28  Aligned_cols=307  Identities=18%  Similarity=0.189  Sum_probs=262.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |||++++..      +++.+++++.|+    |+|+++||||||.++|||++|+++++|.+..  ..|.++|  +|++|+|
T Consensus         1 MKA~v~~~~------~~~~~~l~e~~~----P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~--~~p~i~G--hE~aG~V   66 (348)
T 4eez_A            1 MKAAVVRHN------PDGYADLVEKEL----RAIKPNEALLDMEYCGVCHTDLHVAAGDFGN--KAGTVLG--HEGIGIV   66 (348)
T ss_dssp             CEEEEECSS------CCSSEEEEECCC----CCCCTTEEEEEEEEEECCHHHHHHHTTTTCC--CTTCBCC--SEEEEEE
T ss_pred             CeEEEEEcC------CCCcEEEEEeEC----CCCCCCEEEEEEEEEEECHHHHHHhcCCCCC--CCCcccc--eeEEEEE
Confidence            688887632      236789998866    7899999999999999999999999875422  3344455  5999999


Q ss_pred             EEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +++|++|++|++||||++.                              .|+|+||++++++.++++   |+++++++ |
T Consensus        67 ~~vG~~V~~~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~i---P~~~~~~~-a  142 (348)
T 4eez_A           67 KEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKV---PDGLDPIE-A  142 (348)
T ss_dssp             EEECTTCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBC---CTTSCHHH-H
T ss_pred             EEECceeeecccCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeec---CCCCCHHH-H
Confidence            9999999999999999731                              289999999999998665   99999999 8


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      |+++++++|||+++. .+++++|++|||+|+ |++|.+++++|+.. |++|++++++++|.++++ ++|+++++||++ .
T Consensus       143 a~l~~~~~ta~~~l~-~~~~~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~-~~Ga~~~i~~~~-~  218 (348)
T 4eez_A          143 SSITCAGVTTYKAIK-VSGVKPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK-KIGADVTINSGD-V  218 (348)
T ss_dssp             HHHHHHHHHHHHHHH-HHTCCTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH-HTTCSEEEEC-C-C
T ss_pred             hhcccceeeEEeeec-ccCCCCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh-hcCCeEEEeCCC-C
Confidence            999999999999996 677899999999997 99999999999877 569999999999999999 999999999988 7


Q ss_pred             hHHHHHHHHCCC-CceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccc
Q 042784          222 SFDAALTKYFPN-GIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS  299 (356)
Q Consensus       222 ~~~~~i~~~~~~-~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (356)
                      ++.+++++++++ ++|.++|++++. .+..++++++++|+++.+|.....        ...+...++.+++++.++..++
T Consensus       219 ~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~i~gs~~~~  290 (348)
T 4eez_A          219 NPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTE--------MTLSVPTVVFDGVEVAGSLVGT  290 (348)
T ss_dssp             CHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCE--------EEECHHHHHHSCCEEEECCSCC
T ss_pred             CHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCCceEEEEeccCCC--------CccCHHHHHhCCeEEEEEecCC
Confidence            899999999855 899999998874 789999999999999999876541        2235566788999999876654


Q ss_pred             ccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          300 HMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                           ++.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+||++++
T Consensus       291 -----~~~~~~~~~l~~~g~i~p~~-~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk  340 (348)
T 4eez_A          291 -----RLDLAEAFQFGAEGKVKPIV-ATRKLEEINDIIDEMKAGKIEGRMVIDFTK  340 (348)
T ss_dssp             -----HHHHHHHHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred             -----HHHHHHHHHHHHcCCCEEEE-EEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence                 25678899999999999765 689999999999999999999999999874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=1.8e-51  Score=377.70  Aligned_cols=318  Identities=19%  Similarity=0.210  Sum_probs=263.0

Q ss_pred             eeeeeeEEEe--cccCCCCCCCCCeEEEEe---------eccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccC
Q 042784           10 TVESKEWYIS--AYASDGVPTSDHLKLRSA---------SVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFP   78 (356)
Q Consensus        10 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~   78 (356)
                      +.+||++++.  .++    ++++.+++++.         +.    |+|+++||||||.+++||++|++.+.|.+......
T Consensus         8 p~~mka~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~   79 (349)
T 3pi7_A            8 PSEMKALLLVGDGYT----KTPSGSALEAMEPYLEQGRIAV----PAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVK   79 (349)
T ss_dssp             CSEEEEEEECSCBSC----SSCCCSCCCCSTTTEEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCT
T ss_pred             chhheEEEEEccccC----CCcccceEEEeecccccccCCC----CCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCC
Confidence            4569999998  552    34566777666         66    78999999999999999999999999754332234


Q ss_pred             CCccCceeeeeEEEEEeccCC-CCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhH
Q 042784           79 QFNLNQVILAFGIARVIRSKD-SKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAA  152 (356)
Q Consensus        79 ~~~~g~~~~~~G~v~~vg~~v-~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta  152 (356)
                      |.++|+  |++|+|+++|++| ++|++||||++.     .|+|+||++++++.++++   |+++++++ ||++++.++||
T Consensus        80 p~v~G~--E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta  153 (349)
T 3pi7_A           80 GRPAGF--EGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPL---LDTVRDED-GAAMIVNPLTA  153 (349)
T ss_dssp             TSBCCS--EEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSSBSEEEEEGGGEEEC---CTTCCC---GGGSSHHHHHH
T ss_pred             CCCccc--eEEEEEEEECCCccCCCCCCCEEEEeccCCCCccceeeEeechHHeEEC---CCCCCHHH-HhhccccHHHH
Confidence            455554  9999999999999 999999999942     599999999999988665   99999999 89999999999


Q ss_pred             HHHHHHhCCCCCC-CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC
Q 042784          153 WVGIEVLGQPKSG-SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       153 ~~~l~~~~~~~~g-~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      |+++. .++ ++| ++|+|+||+|++|++++|+|+..|++|+++++++++.++++ ++|++.++|+++ .++.+.+++++
T Consensus       154 ~~~~~-~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~-~~~~~~v~~~~  229 (349)
T 3pi7_A          154 IAMFD-IVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DIGAAHVLNEKA-PDFEATLREVM  229 (349)
T ss_dssp             HHHHH-HHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HHTCSEEEETTS-TTHHHHHHHHH
T ss_pred             HHHHH-HHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEECCc-HHHHHHHHHHh
Confidence            97765 455 666 79999999999999999999999999999999999999999 899999999987 78999999888


Q ss_pred             C-CCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhh-hhhhccceEEEEEecccccc----hHH
Q 042784          232 P-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNL-LNMIGKEVKMEGFMIGSHMD----RFA  305 (356)
Q Consensus       232 ~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~  305 (356)
                      + +++|++|||+|.+.+..++++++++|+++.+|......       ...+. ..++.+++++.++...++..    ...
T Consensus       230 ~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~-------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~  302 (349)
T 3pi7_A          230 KAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDA-------TVIREPGQLIFQHKHIEGFWLSEWMRQFKERRG  302 (349)
T ss_dssp             HHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCSCCSC-------CCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHH
T ss_pred             cCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEeccCCCC-------CCCCchhhhhccccEEEEEEehhhhhhCcHHHH
Confidence            5 48999999999998899999999999999999755421       11233 56778999999987765432    235


Q ss_pred             HHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          306 DFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       306 ~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +.++++++++.+|++++.++++|+|+++++||+.+ +++..||+|+++
T Consensus       303 ~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~-~~~~~gKvvl~p  349 (349)
T 3pi7_A          303 PAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPAE-LTKPNGKVFIRP  349 (349)
T ss_dssp             HHHHHC-CTTTTSSCCC-CCEEEEHHHHHHHHHHH-HTSSSSCEEEEC
T ss_pred             HHHHHHHHHHHcCCcccccceEEcHHHHHHHHHHH-hCCCCceEEEeC
Confidence            77889999999999999999999999999999954 455679999974

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.5e-49  Score=368.02  Aligned_cols=313  Identities=15%  Similarity=0.130  Sum_probs=264.1

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +++||++++..++       +++++++++.    |+|+++||||||.+++||++|++.+.|...  ...|+.+|  +|++
T Consensus         4 ~~~mka~~~~~~g-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~G--hE~~   68 (371)
T 1f8f_A            4 LKDIIAAVTPCKG-------ADFELQALKI----RQPQGDEVLVKVVATGMCHTDLIVRDQKYP--VPLPAVLG--HEGS   68 (371)
T ss_dssp             CEEEEEEEBCSTT-------CCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCC--CEEE
T ss_pred             cccceEEEEcCCC-------CCeEEEEecC----CCCCCCEEEEEEEEeecCchhHHHHcCCCC--CCCCcccC--cccc
Confidence            3458999888653       3588988866    778999999999999999999999987432  12344444  5999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec---------------------------------------------------cCCeeeE
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA---------------------------------------------------FLPVAEY  118 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~---------------------------------------------------~g~~a~~  118 (356)
                      |+|+++|++|++|++||||++.                                                   .|+|+||
T Consensus        69 G~V~~vG~~v~~~~~GdrV~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey  148 (371)
T 1f8f_A           69 GIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATY  148 (371)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSE
T ss_pred             eEEEEeCCCCCCCCCCCEEEecCCCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCe
Confidence            9999999999999999999841                                                   2799999


Q ss_pred             EeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeC
Q 042784          119 SLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTG  197 (356)
Q Consensus       119 ~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~  197 (356)
                      ++++++.++++   |+++|+++ ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|+++++
T Consensus       149 ~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~  223 (371)
T 1f8f_A          149 ALSRENNTVKV---TKDVPIEL-LGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDI  223 (371)
T ss_dssp             EEEEGGGEEEE---CTTSCGGG-TGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             EEechhheEEC---CCCCCHHH-HHHhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECC
Confidence            99999988665   99999999 78999999999999977889999999999996 9999999999999999 7999999


Q ss_pred             ChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccc
Q 042784          198 SDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTER  276 (356)
Q Consensus       198 s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  276 (356)
                      ++++.++++ ++|+++++|+++ .++.+.+++++++++|+|||++|. ..++.++++++++|+++.+|......      
T Consensus       224 ~~~~~~~a~-~lGa~~vi~~~~-~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~------  295 (371)
T 1f8f_A          224 VESRLELAK-QLGATHVINSKT-QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGT------  295 (371)
T ss_dssp             CHHHHHHHH-HHTCSEEEETTT-SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTC------
T ss_pred             CHHHHHHHH-HcCCCEEecCCc-cCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCC------
Confidence            999999998 999999999987 678888998886699999999997 58899999999999999999764311      


Q ss_pred             cchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeee--eeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          277 DGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS--KHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      ....+...++.+++++.++......  ..+.++++++++.+|++++  .+++ |+|+++++||+.+.+++. +|+|++++
T Consensus       296 ~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~-~Kvvv~~~  371 (371)
T 1f8f_A          296 TAQFDVNDLLLGGKTILGVVEGSGS--PKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGIT-LKPIIKIA  371 (371)
T ss_dssp             CCCCCHHHHHHTTCEEEECSGGGSC--HHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSC-SEEEEECC
T ss_pred             ccccCHHHHHhCCCEEEEeCCCCCc--hHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCc-eEEEEeeC
Confidence            1123445567889999987655421  2467899999999999985  5777 999999999999988775 79999863

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=9.3e-50  Score=368.96  Aligned_cols=329  Identities=14%  Similarity=0.147  Sum_probs=261.5

Q ss_pred             CCccccccceeeeeeEEEecccCCCCCCCCCeEEE-EeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCC
Q 042784            1 MGSAEEKLETVESKEWYISAYASDGVPTSDHLKLR-SASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQ   79 (356)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~   79 (356)
                      |+..+ |.++.+||++++...        +.++++ +.+.    |+|+++||||||.+++||++|++++.|.    ..+|
T Consensus         1 ~~~~t-m~~p~~mkA~v~~~~--------~~l~~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~p   63 (371)
T 3gqv_A            1 MGDQP-FIPPPQQTALTVNDH--------DEVTVWNAAPC----PMLPRDQVYVRVEAVAINPSDTSMRGQF----ATPW   63 (371)
T ss_dssp             ---CC-CCCCSCEEEEEECTT--------SCEEEEEEECC----CCCCTTSEEEEEEEEECCGGGGC---------CCTT
T ss_pred             CCCCC-CCCchhceeEEEcCC--------CceEEeccCCC----CCCCCCEEEEEEEEEEcCHHHHHHhhcC----CCCC
Confidence            45555 444567999998854        679998 8865    7889999999999999999999988752    2345


Q ss_pred             CccCceeeeeEEEEEeccCCCCCCCCCEEEe-c---------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchh
Q 042784           80 FNLNQVILAFGIARVIRSKDSKYSDGDIVLR-A---------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPG  149 (356)
Q Consensus        80 ~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~-~---------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~  149 (356)
                      ..+|+  |++|+|+++|+++++|++||||+. +         .|+|+||++++++.++++   |+++++++ ||++++++
T Consensus        64 ~v~G~--e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~---P~~~~~~~-aa~~~~~~  137 (371)
T 3gqv_A           64 AFLGT--DYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKI---PKGLSFEQ-AAALPAGI  137 (371)
T ss_dssp             SCCCS--EEEEEEEEECTTCCSCCTTCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEEC---CTTCCHHH-HHTSHHHH
T ss_pred             ccCcc--ccEEEEEEeCCCCCCCCCCCEEEEeccCCCCCCCCCCcCcCeEEEchhheEEC---CCCCCHHH-HhhhhhhH
Confidence            55665  899999999999999999999993 1         489999999999988655   99999999 78889999


Q ss_pred             hhHHHHHHHh-CCC-----------CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeec
Q 042784          150 FAAWVGIEVL-GQP-----------KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNY  217 (356)
Q Consensus       150 ~ta~~~l~~~-~~~-----------~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~  217 (356)
                      .|||+++.+. .++           ++|++|||+|++|++|++++|+|+..|++|++++ +++++++++ ++|+++++|+
T Consensus       138 ~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~-~lGa~~vi~~  215 (371)
T 3gqv_A          138 STAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAK-SRGAEEVFDY  215 (371)
T ss_dssp             HHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH-HTTCSEEEET
T ss_pred             HHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHH-HcCCcEEEEC
Confidence            9999999777 553           8999999999999999999999999999999997 899999998 9999999999


Q ss_pred             CChhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhc-ccCCEEEEEeccccccc-ccccccchhhhhhhhccceEEEE
Q 042784          218 NSEMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHV-NVHARIILCGMISQYNK-VWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       218 ~~~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l-~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      ++ .++.+.+++++++++|+||||+|+ ..++.+++++ +++|+++.+|....... .............++.|++++.+
T Consensus       216 ~~-~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g  294 (371)
T 3gqv_A          216 RA-PNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPA  294 (371)
T ss_dssp             TS-TTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCST
T ss_pred             CC-chHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeeccccccccc
Confidence            88 789999999997789999999998 5789999999 69999999986543110 00011111223456778888877


Q ss_pred             Eecccccc----hHHHHHHHHHHHHHcCCeeeeeeE--EeChhhHHHHHHHHHcCCCcc-eEEEEecC
Q 042784          295 FMIGSHMD----RFADFTVEMESYIKEGKIRSKHVI--YYGVESFLESLGSLFSSSNIG-KVVIQVKA  355 (356)
Q Consensus       295 ~~~~~~~~----~~~~~l~~~~~~~~~g~i~~~~~~--~~~~~~~~~a~~~~~~~~~~g-kvvi~~~~  355 (356)
                      +.......    ...++++++++++.+|++++.+..  .|+|+++++||+.+.+++..| |+|+++.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~~~~  362 (371)
T 3gqv_A          295 PYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVRLEG  362 (371)
T ss_dssp             TTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEEECC
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEEeCC
Confidence            64332221    233566788999999999886554  599999999999999999888 77887765

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=5.9e-50  Score=368.67  Aligned_cols=318  Identities=17%  Similarity=0.231  Sum_probs=257.9

Q ss_pred             eeeeeEEEecccCCCCCCC-CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           11 VESKEWYISAYASDGVPTS-DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      .+||++++..++     .+ +.+++++.+.    |+|+++||||||.+++||++|++.+.|........|..+|  +|++
T Consensus        25 ~~mka~~~~~~g-----~~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G--~E~~   93 (357)
T 1zsy_A           25 ARVRALVYGHHG-----DPAKVVELKNLEL----AAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGG--NEGV   93 (357)
T ss_dssp             CCEEEEEESSSS-----CHHHHEEEEEECC----CCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECC--SCCE
T ss_pred             hhhEEEEEecCC-----CccceEEEeeccC----CCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCcccc--ceEE
Confidence            458899888653     22 2388888755    7889999999999999999999999875332112344444  5999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec---cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCC
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA---FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGS  166 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  166 (356)
                      |+|+++|+++++|++||||+..   .|+|+||++++++.++++   |+++|+++ ||+++++++|||+++.+.+++++|+
T Consensus        94 G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~i---P~~l~~~~-Aa~l~~~~~ta~~~l~~~~~~~~g~  169 (357)
T 1zsy_A           94 AQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQV---PSDIPLQS-AATLGVNPCTAYRMLMDFEQLQPGD  169 (357)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSSCSCCSBSEEEEEGGGEEEE---CSSSCHHH-HHHTTSHHHHHHHHHHHSSCCCTTC
T ss_pred             EEEEEeCCCCCCCCCCCEEEEcCCCCccceeEEecCHHHcEEC---CCCCCHHH-HhhhcccHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999942   499999999999988665   99999999 7899999999999998888999999


Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh----HHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC--CceEEEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD----DNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN--GIDVYLD  240 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~----~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~--~~d~vld  240 (356)
                      +|||+|++|++|++++|+||.+|+++++++.++    ++.++++ ++|+++++|+.+  ...+.+.+++++  ++|+|||
T Consensus       170 ~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~-~lGa~~vi~~~~--~~~~~~~~~~~~~~~~Dvvid  246 (357)
T 1zsy_A          170 SVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK-SLGAEHVITEEE--LRRPEMKNFFKDMPQPRLALN  246 (357)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH-HTTCSEEEEHHH--HHSGGGGGTTSSSCCCSEEEE
T ss_pred             EEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH-hcCCcEEEecCc--chHHHHHHHHhCCCCceEEEE
Confidence            999999999999999999999999888777543    3567888 899999998752  223345565533  6999999


Q ss_pred             CCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-----chHHHHHHHHHHHH
Q 042784          241 NVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-----DRFADFTVEMESYI  315 (356)
Q Consensus       241 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~  315 (356)
                      |+|++....++++++++|+++.+|......       ...+...++.+++++.++....+.     ....+.++++++++
T Consensus       247 ~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~-------~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~  319 (357)
T 1zsy_A          247 CVGGKSSTELLRQLARGGTMVTYGGMAKQP-------VVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLI  319 (357)
T ss_dssp             SSCHHHHHHHHTTSCTTCEEEECCCCTTCC-------BCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhhCCCCEEEEEecCCCCC-------CCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHH
Confidence            999987778999999999999998643211       122344567799999998765431     22346789999999


Q ss_pred             HcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          316 KEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       316 ~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      .+|++++.+.++|+|+++++||+.+.+++..||+|+++
T Consensus       320 ~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          320 RRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             HTTSSCCCCEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             HcCCCcCccceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence            99999998888999999999999999988889999974

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.9e-50  Score=370.01  Aligned_cols=306  Identities=18%  Similarity=0.185  Sum_probs=257.7

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCC-CCCCcEEEEEEEEEeChhhhhhhcCCCCC--CccCCCccCcee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDS-IPDHHVAVETLWISIDPYLRATMTGTNDG--LYFPQFNLNQVI   86 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~-~~~~eVlVkv~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~~~   86 (356)
                      +.+||++++..++       +.+++++++.    |+ |+++||||||.+++||++|++.+.|.+..  ....|..+|  +
T Consensus        13 ~~~mka~~~~~~g-------~~l~~~~~p~----P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G--~   79 (359)
T 1h2b_A           13 VERLKAARLHEYN-------KPLRIEDVDY----PRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLG--H   79 (359)
T ss_dssp             ----CEEEESSTT-------SCCEEECCCC----CCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECC--C
T ss_pred             hhhceEEEEecCC-------CCcEEEEccC----CCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecC--c
Confidence            4568999988653       3588887755    77 89999999999999999999999874320  112344455  5


Q ss_pred             eeeEEEEEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCCCCC
Q 042784           87 LAFGIARVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIP  137 (356)
Q Consensus        87 ~~~G~v~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s  137 (356)
                      |++|+|+++|+++++|++||||+.                             ..|+|+||++++++.++++   |+++|
T Consensus        80 E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~i---P~~~~  156 (359)
T 1h2b_A           80 ENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKL---PKDIS  156 (359)
T ss_dssp             CEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEEC---CTTCC
T ss_pred             CceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEEC---CCCCC
Confidence            999999999999999999999973                             1489999999999988655   99999


Q ss_pred             cccccc---ccCchhhhHHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCC
Q 042784          138 FPDYLS---SLGIPGFAAWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       138 ~~~~aa---~l~~~~~ta~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      +++ ||   ++++++.|||+++.+. +++++|++|||+|+ |++|++++|+||.+ |++|++++++++++++++ ++|++
T Consensus       157 ~~~-aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~lGa~  233 (359)
T 1h2b_A          157 REK-LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RLGAD  233 (359)
T ss_dssp             HHH-HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HTTCS
T ss_pred             HHH-HhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCC
Confidence            999 67   7899999999999865 89999999999998 99999999999999 999999999999999999 99999


Q ss_pred             ceeecCChhhHHHHHHHHCCC-CceEEEECCchh---hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhcc
Q 042784          213 DAFNYNSEMSFDAALTKYFPN-GIDVYLDNVGGK---MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGK  288 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  288 (356)
                      +++|+++ . +.+.+++++++ ++|+||||+|.+   .++.++++  ++|+++.+|....     .    ..+...++.+
T Consensus       234 ~vi~~~~-~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~-----~----~~~~~~~~~~  300 (359)
T 1h2b_A          234 HVVDARR-D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGE-----L----RFPTIRVISS  300 (359)
T ss_dssp             EEEETTS-C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSC-----C----CCCHHHHHHT
T ss_pred             EEEeccc-h-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCC-----C----CCCHHHHHhC
Confidence            9999987 4 88888888855 899999999987   78888887  9999999987543     1    2244456789


Q ss_pred             ceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          289 EVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ++++.++...+     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++
T Consensus       301 ~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          301 EVSFEGSLVGN-----YVELHELVTLALQGKVRVEV-DIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             TCEEEECCSCC-----HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             CcEEEEecCCC-----HHHHHHHHHHHHcCCCcceE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence            99999876543     35689999999999999988 8999999999999999998889999974

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.5e-49  Score=362.70  Aligned_cols=322  Identities=16%  Similarity=0.202  Sum_probs=264.7

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..+     +.++.+++++.+.    |+|+++||||||.+++||++|++++.|.+......++|...|+|++|+|
T Consensus         2 Mka~~~~~~-----g~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V   72 (333)
T 1wly_A            2 VMAAVIHKK-----GGPDNFVWEEVKV----GSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVV   72 (333)
T ss_dssp             CEEEEESSC-----SSGGGEEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEE
T ss_pred             cEEEEEccc-----CCcceeEEEeccC----CCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEE
Confidence            688888765     3456799988755    7889999999999999999999999874311100223444445999999


Q ss_pred             EEeccCCCCCCCCCEEEec---cCCeeeEEeecCCcccccCCCCCCCCccc-cccccCchhhhHHHHHHHhCCCCCCCEE
Q 042784           93 RVIRSKDSKYSDGDIVLRA---FLPVAEYSLLPCDLLTRKLDPASGIPFPD-YLSSLGIPGFAAWVGIEVLGQPKSGSNV  168 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~V  168 (356)
                      +++|+++++|++||||+..   .|+|+||++++++.++++   |+++++++ .||+++++++|||+++.+.+++++|++|
T Consensus        73 ~~vG~~v~~~~~GdrV~~~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~v  149 (333)
T 1wly_A           73 EEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKV---PKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYV  149 (333)
T ss_dssp             EEECTTCCSCCTTCEEEECSSSCCCSBSEEEEEGGGCEEC---CTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEE
T ss_pred             EEECCCCCCCCCCCEEEEecCCCCcceeEEEecHHHcEeC---CCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEE
Confidence            9999999999999999742   699999999999988655   99999986 1378999999999999878899999999


Q ss_pred             EEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCchhhH
Q 042784          169 FVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGKML  247 (356)
Q Consensus       169 lV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~~  247 (356)
                      ||+|++|++|++++++++..|++|+++++++++.+.++ ++|++.++|+++ .++.+.+.+.+ +.++|++|||+|...+
T Consensus       150 lV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~g~~~~~d~~~-~~~~~~i~~~~~~~~~d~vi~~~g~~~~  227 (333)
T 1wly_A          150 LIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KLGCHHTINYST-QDFAEVVREITGGKGVDVVYDSIGKDTL  227 (333)
T ss_dssp             EETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEETTT-SCHHHHHHHHHTTCCEEEEEECSCTTTH
T ss_pred             EEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEECCC-HHHHHHHHHHhCCCCCeEEEECCcHHHH
Confidence            99999999999999999999999999999999999998 899998999887 67778888776 4589999999999999


Q ss_pred             HHHHHhcccCCEEEEEecccccccccccccchhhhh-hhhccc--eEEEEEecccc--cchHHHHHHHHHHHHHcCCeee
Q 042784          248 EAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLL-NMIGKE--VKMEGFMIGSH--MDRFADFTVEMESYIKEGKIRS  322 (356)
Q Consensus       248 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~--~~~~~~~l~~~~~~~~~g~i~~  322 (356)
                      +.++++++++|+++.+|...+..       ...+.. .++.|+  +++.++....+  ...+.+.++++++++.+|++++
T Consensus       228 ~~~~~~l~~~G~iv~~g~~~~~~-------~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~  300 (333)
T 1wly_A          228 QKSLDCLRPRGMCAAYGHASGVA-------DPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHS  300 (333)
T ss_dssp             HHHHHTEEEEEEEEECCCTTCCC-------CCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHhhccCCEEEEEecCCCCc-------CCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcCC
Confidence            99999999999999998765311       112333 566788  88887644211  1223467899999999999999


Q ss_pred             eeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          323 KHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       323 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      .++++|+|+++++||+.+.+++..||+|+++++
T Consensus       301 ~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  333 (333)
T 1wly_A          301 SVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA  333 (333)
T ss_dssp             CEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred             CcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            999999999999999999998889999998764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=5.2e-49  Score=364.99  Aligned_cols=311  Identities=15%  Similarity=0.154  Sum_probs=259.5

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +++||++++..++       +.++++++++    |+|+++||||||.+++||++|++.+.|.  .  ..++|...|+|++
T Consensus         6 p~~mka~~~~~~g-------~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~--~--~~~~P~v~GhE~~   70 (376)
T 1e3i_A            6 VIKCKAAIAWKTG-------SPLCIEEIEV----SPPKACEVRIQVIATCVCPTDINATDPK--K--KALFPVVLGHECA   70 (376)
T ss_dssp             CEEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHTTCTT--S--CCCSSBCCCCEEE
T ss_pred             ChheeEEEEecCC-------CCeEEEEeeC----CCCCCCeEEEEEeEEeEchhhHHHhcCC--C--CCCCCcccCcccc
Confidence            3458898887643       3588988876    7789999999999999999999998874  1  1233444445999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec------------------------------------------------------cCCe
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA------------------------------------------------------FLPV  115 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~------------------------------------------------------~g~~  115 (356)
                      |+|+++|++|++|++||||++.                                                      .|+|
T Consensus        71 G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~  150 (376)
T 1e3i_A           71 GIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSF  150 (376)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCS
T ss_pred             EEEEEECCCCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccc
Confidence            9999999999999999999831                                                      2899


Q ss_pred             eeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEE
Q 042784          116 AEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVG  194 (356)
Q Consensus       116 a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~  194 (356)
                      +||++++++.++++   |+++|+++ ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|++
T Consensus       151 aey~~v~~~~~~~i---P~~l~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~  225 (376)
T 1e3i_A          151 SQYTVVSEANLARV---DDEANLER-VCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIA  225 (376)
T ss_dssp             BSEEEEEGGGEEEC---CTTCCHHH-HGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEE
T ss_pred             eeEEEeccccEEEC---CCCCCHHH-hhhhccHHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEE
Confidence            99999999988655   99999999 78999999999999987899999999999996 9999999999999999 8999


Q ss_pred             EeCChHHHHHHHHHhCCCceeecCC-hhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEeccccccc
Q 042784          195 STGSDDNVKLLKEEFGYDDAFNYNS-EMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNK  271 (356)
Q Consensus       195 ~~~s~~~~~~~~~~~g~~~v~~~~~-~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~  271 (356)
                      ++++++++++++ ++|+++++|+++ ..++.+.+++++++++|+||||+|. ..++.++++++++ |+++.+|....   
T Consensus       226 ~~~~~~~~~~a~-~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~---  301 (376)
T 1e3i_A          226 IDINGEKFPKAK-ALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVD---  301 (376)
T ss_dssp             ECSCGGGHHHHH-HTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSS---
T ss_pred             EcCCHHHHHHHH-HhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCC---
Confidence            999999999998 999999999873 1468888888876699999999997 5889999999999 99999987322   


Q ss_pred             ccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceE
Q 042784          272 VWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKV  349 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkv  349 (356)
                           ....+...++.++ ++.++....+.  ..+.++++++++.+|+++  +.++++|+|+++++||+.+.+++ .+|+
T Consensus       302 -----~~~~~~~~~~~~~-~i~g~~~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~Kv  372 (376)
T 1e3i_A          302 -----EMTIPTVDVILGR-SINGTFFGGWK--SVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGK-SIRT  372 (376)
T ss_dssp             -----EEEEEHHHHHTTC-EEEECSGGGCC--HHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTC-CSEE
T ss_pred             -----ccccCHHHhhccC-eEEEEecCCCC--cHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCC-cceE
Confidence                 1122344556677 88887654321  346789999999999987  56788999999999999998877 4799


Q ss_pred             EEEe
Q 042784          350 VIQV  353 (356)
Q Consensus       350 vi~~  353 (356)
                      |+++
T Consensus       373 vi~~  376 (376)
T 1e3i_A          373 ILTF  376 (376)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9975

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=2.4e-50  Score=365.25  Aligned_cols=301  Identities=14%  Similarity=0.158  Sum_probs=242.1

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      |.+||++++..       +++.+++++.+.    |+|+++||||||.+++||++|++.+.|.... ...|..+|  +|++
T Consensus         2 M~tMka~~~~~-------~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G--~e~~   67 (315)
T 3goh_A            2 MEQHQVWAYQT-------KTHSVTLNSVDI----PALAADDILVQNQAIGINPVDWKFIKANPIN-WSNGHVPG--VDGA   67 (315)
T ss_dssp             CCEEEEEEEET-------TTTEEEEEEEEC----CCCCTTEEEEEEEEEEECHHHHHHHHHCTTC-CCTTCCCC--SEEE
T ss_pred             CcceEEEEEeC-------CCCeeEEEecCC----CCCCCCEEEEEEEEEecCHHHHHHHcCCCCc-CCCCCEee--eeeE
Confidence            55799999984       247899999866    7899999999999999999999999875432 23344555  5999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCC
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKS  164 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~  164 (356)
                      |+|+++|+++++|++||||+..     .|+|+||++++++.++++   |+++++++ ||+++++++|||+++ +.+++++
T Consensus        68 G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~al-~~~~~~~  142 (315)
T 3goh_A           68 GVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTL---PDNLSFER-AAALPCPLLTAWQAF-EKIPLTK  142 (315)
T ss_dssp             EEEEEECTTSCGGGTTCEEEEECCTTSCCSSBSEEEEETTSEEEC---CTTSCHHH-HHTSHHHHHHHHHHH-TTSCCCS
T ss_pred             EEEEEeCCCCCCCCCCCEEEEeCCCCCCcccccEEEEcHHHhccC---cCCCCHHH-HhhCccHHHHHHHHH-hhcCCCC
Confidence            9999999999999999999942     699999999999988665   99999999 788999999999999 7899999


Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      |++|||+|+ |++|++++|+||.+|++|++++ ++++.++++ ++|++++++     + .+.   + ++++|+||||+|+
T Consensus       143 g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~-~lGa~~v~~-----d-~~~---v-~~g~Dvv~d~~g~  209 (315)
T 3goh_A          143 QREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALAA-KRGVRHLYR-----E-PSQ---V-TQKYFAIFDAVNS  209 (315)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHH-HHTEEEEES-----S-GGG---C-CSCEEEEECC---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHH-HcCCCEEEc-----C-HHH---h-CCCccEEEECCCc
Confidence            999999999 9999999999999999999999 999999999 899998883     1 222   2 6789999999999


Q ss_pred             hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-----c---hHHHHHHHHHHHHH
Q 042784          245 KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-----D---RFADFTVEMESYIK  316 (356)
Q Consensus       245 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~l~~~~~~~~  316 (356)
                      +.+..++++++++|+++.+|.....           .....+.+.+.+....+....     .   ...+.+++++++++
T Consensus       210 ~~~~~~~~~l~~~G~~v~~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  278 (315)
T 3goh_A          210 QNAAALVPSLKANGHIICIQDRIPA-----------PIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIA  278 (315)
T ss_dssp             ----TTGGGEEEEEEEEEECCC---------------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcCCCEEEEEeCCCCc-----------cccchhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999754321           111223455555555543221     1   23456889999999


Q ss_pred             cCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          317 EGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       317 ~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +|++++.++++|+|+++++||+.+.  +..||+|+++++
T Consensus       279 ~g~l~~~i~~~~~l~~~~~A~~~~~--~~~gKvvi~~~~  315 (315)
T 3goh_A          279 QGKMEIAAPDIFRFEQMIEALDHSE--QTKLKTVLTLNE  315 (315)
T ss_dssp             TTSSCCCCCEEEEGGGHHHHHHHHH--HHCCCEEEESCC
T ss_pred             CCCcccccceEecHHHHHHHHHHHH--hcCCcEEEEecC
Confidence            9999999999999999999999998  667999999874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2.2e-49  Score=363.43  Aligned_cols=306  Identities=16%  Similarity=0.161  Sum_probs=260.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..++       +.+++++++.    |+|+++||||||.+++||++|++++.|.... ...++|...|+|++|+|
T Consensus         1 MkA~~~~~~g-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~p~i~G~e~~G~V   68 (345)
T 3jv7_A            1 MKAVQYTEIG-------SEPVVVDIPT----PTPGPGEILLKVTAAGLCHSDIFVMDMPAAQ-YAYGLPLTLGHEGVGTV   68 (345)
T ss_dssp             CEEEEECSTT-------SCCEEEECCC----CCCCTTCEEEEEEEEECCHHHHHHHHSCTTT-CCSCSSEECCSEEEEEE
T ss_pred             CeEEEEcCCC-------CceEEEEecC----CCCCCCeEEEEEEEEeeCHHHHHHHcCCCCc-cCCCCCcccCcccEEEE
Confidence            6888888653       3488988865    7899999999999999999999999975432 12334444455999999


Q ss_pred             EEeccCCCCCCCCCEEEe----------------------------------ccCCeeeEEeec-CCcccccCCCCCCCC
Q 042784           93 RVIRSKDSKYSDGDIVLR----------------------------------AFLPVAEYSLLP-CDLLTRKLDPASGIP  137 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~----------------------------------~~g~~a~~~~v~-~~~~~~~i~~P~~~s  137 (356)
                      +++|+++++|++||||++                                  ..|+|+||++++ ++.+++ +  |+ ++
T Consensus        69 ~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~-~--p~-~~  144 (345)
T 3jv7_A           69 AELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVP-I--GD-LD  144 (345)
T ss_dssp             EEECTTCCSCCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEE-C--TT-CC
T ss_pred             EEECCCCCCCCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEe-C--CC-CC
Confidence            999999999999999984                                  158999999999 766644 4  88 99


Q ss_pred             ccccccccCchhhhHHHHHHH-hCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCcee
Q 042784          138 FPDYLSSLGIPGFAAWVGIEV-LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       138 ~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +++ ||+++++++|||+++.+ .+++++|++|||+|+ |++|++++|+||.+ |++|++++.+++++++++ ++|+++++
T Consensus       145 ~~~-aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~-~lGa~~~i  221 (345)
T 3jv7_A          145 PVA-AAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR-EVGADAAV  221 (345)
T ss_dssp             HHH-HGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH-HTTCSEEE
T ss_pred             HHH-hhhhhhhHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEE
Confidence            999 78999999999999986 458999999999997 99999999999999 569999999999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHCCC-CceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEE
Q 042784          216 NYNSEMSFDAALTKYFPN-GIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKME  293 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (356)
                      +++  .++.+.+++++++ ++|+||||+|.+ .++.++++++++|+++.+|......       ...+. .++.+++++.
T Consensus       222 ~~~--~~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~-------~~~~~-~~~~~~~~i~  291 (345)
T 3jv7_A          222 KSG--AGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAH-------AKVGF-FMIPFGASVV  291 (345)
T ss_dssp             ECS--TTHHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCC-------EEEST-TTSCTTCEEE
T ss_pred             cCC--CcHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-------CCcCH-HHHhCCCEEE
Confidence            987  4788889988854 899999999997 8999999999999999999765411       11222 6678999998


Q ss_pred             EEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          294 GFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ++...+     .+.++++++++++|++++ ++++|+++++++||+.+.+++..||+|+++
T Consensus       292 g~~~~~-----~~~~~~~~~l~~~g~l~~-~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          292 TPYWGT-----RSELMEVVALARAGRLDI-HTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             CCCSCC-----HHHHHHHHHHHHTTCCCC-CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             EEecCC-----HHHHHHHHHHHHcCCCce-EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            876554     367899999999999998 457999999999999999999999999864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.4e-49  Score=362.79  Aligned_cols=312  Identities=22%  Similarity=0.295  Sum_probs=264.7

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..+     +.++.+++++.+.    |+|+++||||||.+++||++|++++.|.+......|..+|  +|++|+|
T Consensus         1 Mka~~~~~~-----g~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G--~E~~G~V   69 (343)
T 2eih_A            1 MRAVVMRAR-----GGPEVLEVADLPV----PEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLG--ADGSGVV   69 (343)
T ss_dssp             CEEEEECSS-----SSGGGEEEEECCC----CCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECC--SEEEEEE
T ss_pred             CeEEEEecC-----CCCceEEEEecCC----CCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccc--cceEEEE
Confidence            578888764     3345688988755    7889999999999999999999999875422112344455  5999999


Q ss_pred             EEeccCCCCCCCCCEEEe------c-----------------------cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLR------A-----------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~------~-----------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +++|+++++|++||||++      +                       .|+|+||++++++.++++   |+++++++ ||
T Consensus        70 ~~vG~~v~~~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~---P~~~~~~~-aa  145 (343)
T 2eih_A           70 DAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPK---PKNLSFEE-AA  145 (343)
T ss_dssp             EEECSSCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEEC---CTTSCHHH-HH
T ss_pred             EEECCCCCCCCCCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEEC---CCCCCHHH-Hh
Confidence            999999999999999993      2                       389999999999988655   99999999 78


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      ++++++.|||+++.+.+++++|++|||+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.++|+.+ .++
T Consensus       146 ~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~ga~~~~d~~~-~~~  223 (343)
T 2eih_A          146 AIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-ALGADETVNYTH-PDW  223 (343)
T ss_dssp             HSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEETTS-TTH
T ss_pred             hchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCEEEcCCc-ccH
Confidence            899999999999986678999999999999999999999999999999999999999999998 899998999887 678


Q ss_pred             HHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccc
Q 042784          224 DAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD  302 (356)
Q Consensus       224 ~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
                      .+.+.+.++ +++|++||++|.+.++.++++++++|+++.+|......       ...+...++.+++++.++....   
T Consensus       224 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~---  293 (343)
T 2eih_A          224 PKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGYE-------GTLPFAHVFYRQLSILGSTMAS---  293 (343)
T ss_dssp             HHHHHHHTTTTCEEEEEESSCSSSHHHHHHHEEEEEEEEESSCCCSCC-------CCCCTTHHHHTTCEEEECCSCC---
T ss_pred             HHHHHHHhCCCCceEEEECCCHHHHHHHHHhhccCCEEEEEecCCCCc-------CccCHHHHHhCCcEEEEecCcc---
Confidence            888888874 48999999999778999999999999999998765411       1123445678899998875332   


Q ss_pred             hHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          303 RFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       303 ~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                        .+.++++++++.+|++++.++++|+|+++++||+.+.+++..||+|+++
T Consensus       294 --~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          294 --KSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             --GGGHHHHHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             --HHHHHHHHHHHHcCCCCCceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence              3457889999999999999999999999999999999988889999985

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=7.9e-50  Score=369.15  Aligned_cols=312  Identities=16%  Similarity=0.140  Sum_probs=261.7

Q ss_pred             ccceeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCcee
Q 042784            7 KLETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVI   86 (356)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~   86 (356)
                      ...+.+||++++.++        +.++++++++    |+|+++||||||.+++||++|++.+.|..    ..++|...|+
T Consensus        18 ~~~p~~mkA~v~~~~--------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~G~~----~~~~p~v~G~   81 (370)
T 4ej6_A           18 LYFQSMMKAVRLESV--------GNISVRNVGI----PEPGPDDLLVKVEACGICGTDRHLLHGEF----PSTPPVTLGH   81 (370)
T ss_dssp             ---CCEEEEEEEEET--------TEEEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHTTSS----CCCSSEECCC
T ss_pred             cccchheEEEEEecC--------CceEEEEccC----CCCCCCeEEEEEEEEeecHHHHHHHcCCC----CCCCCeecCc
Confidence            345567999998864        5789998866    78899999999999999999999998753    2233444445


Q ss_pred             eeeEEEEEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCCCCC
Q 042784           87 LAFGIARVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIP  137 (356)
Q Consensus        87 ~~~G~v~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s  137 (356)
                      |++|+|+++|+++++|++||||+.                             ..|+|+||++++++.++++   |+++|
T Consensus        82 e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~---P~~~~  158 (370)
T 4ej6_A           82 EFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEI---PLTLD  158 (370)
T ss_dssp             SEEEEEEEECTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEE---CTTSC
T ss_pred             ceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEEC---CCCCC
Confidence            999999999999999999999983                             1489999999999988665   99999


Q ss_pred             ccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceee
Q 042784          138 FPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFN  216 (356)
Q Consensus       138 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~  216 (356)
                      +++ | +++.++.|||+++ +.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++.++++.++++ ++|++.++|
T Consensus       159 ~~~-a-al~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~  233 (370)
T 4ej6_A          159 PVH-G-AFCEPLACCLHGV-DLSGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLAE-EVGATATVD  233 (370)
T ss_dssp             TTG-G-GGHHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHTCSEEEC
T ss_pred             HHH-H-hhhhHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCCEEEC
Confidence            998 4 4888999999999 5788999999999997 9999999999999999 9999999999999999 999999999


Q ss_pred             cCChhhHHHHHHH---HCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          217 YNSEMSFDAALTK---YFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       217 ~~~~~~~~~~i~~---~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      +++ .++.+.+++   ++++++|+||||+|. ..++.++++++++|+++.+|......      ....+...++.+++++
T Consensus       234 ~~~-~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~------~~~~~~~~~~~~~~~i  306 (370)
T 4ej6_A          234 PSA-GDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGE------KVEIEPFDILFRELRV  306 (370)
T ss_dssp             TTS-SCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTC------CCCCCHHHHHHTTCEE
T ss_pred             CCC-cCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCC------ccccCHHHHHhCCcEE
Confidence            987 788888888   776799999999995 58999999999999999999765411      1234566778899999


Q ss_pred             EEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCC-CcceEEEEecC
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSS-NIGKVVIQVKA  355 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~~~~  355 (356)
                      .++....      ..++++++++.+|+++  +.++++|+|+++++||+.+.+++ ..+|+|+++++
T Consensus       307 ~g~~~~~------~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~~  366 (370)
T 4ej6_A          307 LGSFINP------FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAER  366 (370)
T ss_dssp             EECCSCT------TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC---
T ss_pred             EEeccCh------HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcccc
Confidence            9986543      2368899999999984  56889999999999999998776 45699888754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=6.7e-49  Score=363.86  Aligned_cols=310  Identities=15%  Similarity=0.141  Sum_probs=257.5

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      ++||++++..++       +.++++++++    |+|+++||||||.+++||++|++++.|...  ...|..+|  +|++|
T Consensus         8 ~~mka~~~~~~g-------~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~G--hE~~G   72 (373)
T 1p0f_A            8 ITCKAAVAWEPH-------KPLSLETITV----APPKAHEVRIKILASGICGSDSSVLKEIIP--SKFPVILG--HEAVG   72 (373)
T ss_dssp             EEEEEEEBSSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCC--CCEEE
T ss_pred             ceeEEEEEEcCC-------CCeeEEEeeC----CCCCCCeEEEEEeEEeecchhHHHhcCCCC--CCCCcccC--cCceE
Confidence            358898887643       3588988876    778999999999999999999999987432  22344444  59999


Q ss_pred             EEEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEe
Q 042784           91 IARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSL  120 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~  120 (356)
                      +|+++|++|++|++||||++.                                                  .|+|+||++
T Consensus        73 ~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~  152 (373)
T 1p0f_A           73 VVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTV  152 (373)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEE
T ss_pred             EEEEECCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEE
Confidence            999999999999999999831                                                  288999999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      ++++.++++   |+++|++  ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|+++++++
T Consensus       153 v~~~~~~~i---P~~l~~~--aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~  226 (373)
T 1p0f_A          153 VADIAVAKI---DPKAPLE--SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHK  226 (373)
T ss_dssp             EETTSEEEE---CTTCCGG--GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EchhhEEEC---CCCCChh--hhhhhhHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            999998665   9999997  58899999999999987899999999999996 9999999999999999 899999999


Q ss_pred             HHHHHHHHHhCCCceeecCC-hhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEecccccccccccc
Q 042784          200 DNVKLLKEEFGYDDAFNYNS-EMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVWTER  276 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~-~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~  276 (356)
                      +++++++ ++|+++++|+++ ..++.+.+++++++++|+||||+|. ..++.++++++++ |+++.+|......      
T Consensus       227 ~~~~~a~-~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~------  299 (373)
T 1p0f_A          227 DKFPKAI-ELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNE------  299 (373)
T ss_dssp             GGHHHHH-HTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTC------
T ss_pred             HHHHHHH-HcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCC------
Confidence            9999999 999999999863 1468888999886699999999997 5889999999999 9999999754311      


Q ss_pred             cchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          277 DGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ....+...++.++ ++.++....+..   +.++++++++.+|+++  +.++++|+|+++++||+.+.+++. +|+|+++
T Consensus       300 ~~~~~~~~~~~~~-~i~g~~~~~~~~---~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 1p0f_A          300 RLPLDPLLLLTGR-SLKGSVFGGFKG---EEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG-VRSIMIY  373 (373)
T ss_dssp             CEEECTHHHHTTC-EEEECSGGGCCG---GGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSC-SEEEEEC
T ss_pred             ccccCHHHhccCc-eEEeeccCCcCH---HHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            1112333455666 888876543321   4578899999999987  567889999999999999987764 7999874

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=3.9e-49  Score=363.61  Aligned_cols=329  Identities=23%  Similarity=0.404  Sum_probs=269.5

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEE-EEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKL-RSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILA   88 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~   88 (356)
                      +.+||++++..++   .+..+.+++ ++.+.    |+|+++||||||.+++||++|++.+.|.+......|+.+|+  |+
T Consensus        21 ~~~MkA~~~~~~g---~~~~~~l~~~~~~p~----P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~--E~   91 (362)
T 2c0c_A           21 QSMMQKLVVTRLS---PNFREAVTLSRDCPV----PLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGF--EG   91 (362)
T ss_dssp             CCEEEEEEECSCC---SSHHHHEEEEEEEEC----CCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCS--EE
T ss_pred             hhhceEEEEeecC---CCccceeEEEeecCC----CCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCc--ee
Confidence            3568999998753   001146888 88766    77899999999999999999999998754322234455555  99


Q ss_pred             eEEEEEeccCCC-CCCCCCEEEe-ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCC
Q 042784           89 FGIARVIRSKDS-KYSDGDIVLR-AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGS  166 (356)
Q Consensus        89 ~G~v~~vg~~v~-~~~~Gd~V~~-~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  166 (356)
                      +|+|+++|++++ +|++||||+. ..|+|+||++++++.++++   |++ +. + +|+++++++|||+++.+.+++++|+
T Consensus        92 ~G~V~~vG~~V~~~~~vGdrV~~~~~G~~aey~~v~~~~~~~~---P~~-~~-~-aaal~~~~~ta~~al~~~~~~~~g~  165 (362)
T 2c0c_A           92 IGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPASIATPV---PSV-KP-E-YLTLLVSGTTAYISLKELGGLSEGK  165 (362)
T ss_dssp             EEEEEEECTTGGGTCCTTCEEEEECSCCSBSEEEEEGGGCEEC---SSS-CH-H-HHTTTTHHHHHHHHHHHHTCCCTTC
T ss_pred             EEEEEEECCCccCCCCCCCEEEEccCCcceeEEEEcHHHeEEC---CCC-ch-H-hhcccchHHHHHHHHHHhcCCCCCC
Confidence            999999999999 9999999993 3599999999999888554   775 43 5 6899999999999998888999999


Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKM  246 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~  246 (356)
                      +|||+||+|++|++++|+|+..|++|+++++++++.++++ ++|++.++|+++ .++.+.+++.+++++|++|||+|...
T Consensus       166 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~-~~~~~~~~~~~~~g~D~vid~~g~~~  243 (362)
T 2c0c_A          166 KVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLK-SLGCDRPINYKT-EPVGTVLKQEYPEGVDVVYESVGGAM  243 (362)
T ss_dssp             EEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTT-SCHHHHHHHHCTTCEEEEEECSCTHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HcCCcEEEecCC-hhHHHHHHHhcCCCCCEEEECCCHHH
Confidence            9999999999999999999999999999999999999999 899999999886 67888888887778999999999999


Q ss_pred             HHHHHHhcccCCEEEEEecccccccccc-cccc-hhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeee
Q 042784          247 LEAVLNHVNVHARIILCGMISQYNKVWT-ERDG-VRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKH  324 (356)
Q Consensus       247 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~  324 (356)
                      ++.++++++++|+++.+|.......... .... ......++.+++++.++....+.....+.++++++++.+|++++.+
T Consensus       244 ~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  323 (362)
T 2c0c_A          244 FDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEV  323 (362)
T ss_dssp             HHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTHHHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCE
T ss_pred             HHHHHHHHhcCCEEEEEeCCCCcCcccccccccccccHHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeee
Confidence            9999999999999999997653210000 0000 0112456788999999876655444567899999999999999876


Q ss_pred             e--------EEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          325 V--------IYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       325 ~--------~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      .        ..|+|+++++||+.+.+++..||+|+++++
T Consensus       324 ~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  362 (362)
T 2c0c_A          324 DLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH  362 (362)
T ss_dssp             ECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred             ccccccccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence            5        468999999999999998889999999864

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=6.9e-49  Score=360.43  Aligned_cols=311  Identities=17%  Similarity=0.124  Sum_probs=256.8

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCC-CCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDS-IPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~-~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      |||+++.+.        +.++++|.|+    |+ ++++||||||.++|||++|++.+.|..    ..++|...|+|++|+
T Consensus         1 MkAvv~~~~--------g~l~v~e~p~----P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~----~~~~P~i~G~E~~G~   64 (346)
T 4a2c_A            1 MKSVVNDTD--------GIVRVAESVI----PEIKHQDEVRVKIASSGLCGSDLPRIFKNG----AHYYPITLGHEFSGY   64 (346)
T ss_dssp             CEEEEECSS--------SCEEEEECCC----CCCCSTTEEEEEEEEEECCTTHHHHHHSSC----SSSSSBCCCCEEEEE
T ss_pred             CCEEEEecC--------CCEEEEEEeC----CCCCCcCEEEEEEEEEEECHHHHHHHcCCC----CCCCCccccEEEEEE
Confidence            788887754        5799998866    76 579999999999999999999888643    223344444599999


Q ss_pred             EEEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           92 ARVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      |+++|++|+++++||||++.                             .|+|+||++++++.++++   |+++|+++ |
T Consensus        65 V~~vG~~V~~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~l~~~~-a  140 (346)
T 4a2c_A           65 IDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFAL---PTDMPIED-G  140 (346)
T ss_dssp             EEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEEC---CTTSCGGG-G
T ss_pred             EEEECCCcccccCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEEC---CCCCCHHH-H
Confidence            99999999999999999841                             389999999999998665   99999998 5


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      |.+ ....++++++ ...++++|++|||+|+ |++|++++|+||++|+ .+++++.+++|+++++ ++|+++++|+++ .
T Consensus       141 a~l-~~~~~~~~~~-~~~~~~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~-~lGa~~~i~~~~-~  215 (346)
T 4a2c_A          141 AFI-EPITVGLHAF-HLAQGCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALAK-SFGAMQTFNSSE-M  215 (346)
T ss_dssp             GGH-HHHHHHHHHH-HHTTCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEETTT-S
T ss_pred             Hhc-hHHHHHHHHH-HHhccCCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHHHH-HcCCeEEEeCCC-C
Confidence            544 3455555555 5788999999999997 9999999999999999 6678888999999999 999999999987 6


Q ss_pred             hHHHHHHHHC-CCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccc
Q 042784          222 SFDAALTKYF-PNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS  299 (356)
Q Consensus       222 ~~~~~i~~~~-~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (356)
                      ++.+.+++++ ++++|+|+|++|.+ .++.++++++++|+++.+|......     .....+...++.|++++.++....
T Consensus       216 ~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~k~~~i~G~~~~~  290 (346)
T 4a2c_A          216 SAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDL-----HLTSATFGKILRKELTVIGSWMNY  290 (346)
T ss_dssp             CHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCE-----EECHHHHHHHHHHTCEEEECCTTC
T ss_pred             CHHHHHHhhcccCCcccccccccccchhhhhhheecCCeEEEEEeccCCCc-----cccccCHHHHhhceeEEEEEeccc
Confidence            7788888877 45899999999964 8899999999999999999866521     222334566788999999986654


Q ss_pred             ccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          300 HMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       300 ~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ......+.++++++++.+|+++  +.++++|+|+++++||+.+.+++..||+||++
T Consensus       291 ~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          291 SSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             CSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             cCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            3333346788999999999885  56889999999999999999999999999863

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=6.1e-49  Score=359.39  Aligned_cols=307  Identities=18%  Similarity=0.196  Sum_probs=260.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..++       +.+++++.+.    |+|+++||||||.+++||++|++.+.|.+......|..+|  +|++|+|
T Consensus         1 Mka~~~~~~g-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G--hE~~G~V   67 (339)
T 1rjw_A            1 MKAAVVEQFK-------EPLKIKEVEK----PTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPG--HEGVGIV   67 (339)
T ss_dssp             CEEEEBSSTT-------SCCEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCC--SCEEEEE
T ss_pred             CeEEEEcCCC-------CCcEEEEeeC----CCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeecc--ccceEEE
Confidence            5778777543       3588888755    7889999999999999999999999875432122344455  5999999


Q ss_pred             EEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +++|+++++|++||||++.                              .|+|+||++++++.++++   |+++|+++ |
T Consensus        68 ~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~---P~~~~~~~-a  143 (339)
T 1rjw_A           68 EEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKI---PDNLSFEE-A  143 (339)
T ss_dssp             EEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEEC---CTTSCHHH-H
T ss_pred             EEECCCCCcCCCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEEC---CCCCCHHH-h
Confidence            9999999999999999831                              388999999999988655   99999999 7


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      |++++++.|||+++... ++++|++|||+|+ |++|++++|+|+..|++|+++++++++.++++ ++|++.++|+.+ .+
T Consensus       144 a~l~~~~~ta~~~l~~~-~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~d~~~-~~  219 (339)
T 1rjw_A          144 APIFCAGVTTYKALKVT-GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVVNPLK-ED  219 (339)
T ss_dssp             GGGGTHHHHHHHHHHHH-TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSEEECTTT-SC
T ss_pred             hhhhhhHHHHHHHHHhc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HCCCCEEecCCC-cc
Confidence            89999999999999755 8999999999999 89999999999999999999999999999998 899999999886 67


Q ss_pred             HHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc
Q 042784          223 FDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM  301 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (356)
                      +.+.+++.+ +++|++||++|. ..++.++++++++|+++.+|.....        ...+...++.+++++.++...+  
T Consensus       220 ~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--------~~~~~~~~~~~~~~i~g~~~~~--  288 (339)
T 1rjw_A          220 AAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEE--------MPIPIFDTVLNGIKIIGSIVGT--  288 (339)
T ss_dssp             HHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSE--------EEEEHHHHHHTTCEEEECCSCC--
T ss_pred             HHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCC--------CccCHHHHHhCCcEEEEeccCC--
Confidence            888888776 689999999997 6889999999999999999876531        1234455677899998875543  


Q ss_pred             chHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          302 DRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       302 ~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                         .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++++
T Consensus       289 ---~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  338 (339)
T 1rjw_A          289 ---RKDLQEALQFAAEGKVKTII-EVQPLEKINEVFDRMLKGQINGRVVLTLED  338 (339)
T ss_dssp             ---HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             ---HHHHHHHHHHHHcCCCCccE-EEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence               35688999999999998864 689999999999999998889999999865

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-49  Score=360.26  Aligned_cols=314  Identities=16%  Similarity=0.186  Sum_probs=264.3

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      |.+||++++..++       +++++++++.    |+|+++||||||.+++||++|++.+.|.+......|..+|  +|++
T Consensus         3 p~~mka~~~~~~g-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G--~E~~   69 (347)
T 2hcy_A            3 PETQKGVIFYESH-------GKLEYKDIPV----PKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGG--HEGA   69 (347)
T ss_dssp             CSEEEEEEESSTT-------CCCEEEEEEC----CCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECC--CEEE
T ss_pred             CcccEEEEEeCCC-------CCCEEEEeeC----CCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccC--ccce
Confidence            4569999988653       3588988866    7789999999999999999999999875432122344444  5999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCcc
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFP  139 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~  139 (356)
                      |+|+++|+++++|++||||++.                              .|+|+||++++++.++++   |++++++
T Consensus        70 G~V~~vG~~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~~  146 (347)
T 2hcy_A           70 GVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHI---PQGTDLA  146 (347)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEE---CTTCCHH
T ss_pred             EEEEEECCCCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEEC---CCCCCHH
Confidence            9999999999999999999831                              488999999999988665   9999999


Q ss_pred             ccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCC
Q 042784          140 DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNS  219 (356)
Q Consensus       140 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~  219 (356)
                      + ||+++++++|||+++.. .++++|++|||+|++|++|++++++++..|++|+++++++++.+.++ ++|++.++|+.+
T Consensus       147 ~-aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~-~~g~~~~~d~~~  223 (347)
T 2hcy_A          147 Q-VAPILCAGITVYKALKS-ANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-SIGGEVFIDFTK  223 (347)
T ss_dssp             H-HGGGGTHHHHHHHHHHT-TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH-HTTCCEEEETTT
T ss_pred             H-HHHHhhhHHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH-HcCCceEEecCc
Confidence            9 78999999999999974 58999999999999999999999999999999999999999999998 899998999874


Q ss_pred             hhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecc
Q 042784          220 EMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIG  298 (356)
Q Consensus       220 ~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (356)
                      ..++.+.+++++++++|++||++|. ..++.++++++++|+++.+|...+..       ...+...++.+++++.++...
T Consensus       224 ~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-------~~~~~~~~~~~~~~i~g~~~~  296 (347)
T 2hcy_A          224 EKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAK-------CCSDVFNQVVKSISIVGSYVG  296 (347)
T ss_dssp             CSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCE-------EEEEHHHHHHTTCEEEECCCC
T ss_pred             cHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCC-------CCCCHHHHhhCCcEEEEccCC
Confidence            3678888888764489999999997 68899999999999999998765311       123445567789999887554


Q ss_pred             cccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          299 SHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       299 ~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++++
T Consensus       297 ~-----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  347 (347)
T 2hcy_A          297 N-----RADTREALDFFARGLVKSPI-KVVGLSTLPEIYEKMEKGQIVGRYVVDTSK  347 (347)
T ss_dssp             C-----HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred             C-----HHHHHHHHHHHHhCCCccce-EEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence            3     35688899999999998864 689999999999999998888999998763

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1e-49  Score=368.34  Aligned_cols=325  Identities=17%  Similarity=0.167  Sum_probs=260.4

Q ss_pred             eeeeeeEEEecccCCCCCCC-CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCC------Cc-
Q 042784           10 TVESKEWYISAYASDGVPTS-DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQ------FN-   81 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~------~~-   81 (356)
                      |++||++++..++     .+ +.+++++.++  |.|.++++||||||.+++||++|++.+.|.+......|      .+ 
T Consensus         1 ~~~mka~~~~~~g-----~~~~~l~~~~~~~--P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~   73 (364)
T 1gu7_A            1 MITAQAVLYTQHG-----EPKDVLFTQSFEI--DDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPA   73 (364)
T ss_dssp             CEEEEEEEESSCS-----CHHHHCEEEEEEE--CTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCB
T ss_pred             CceEEEEEeccCC-----CchheeEEeeccC--CCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcc
Confidence            3468999998753     22 3488998877  32334499999999999999999999987543211122      00 


Q ss_pred             cCceeeeeEEEEEeccCCCCCCCCCEEEe---ccCCeeeEEeecCCcccccCCCCC-----------CCCccccccccCc
Q 042784           82 LNQVILAFGIARVIRSKDSKYSDGDIVLR---AFLPVAEYSLLPCDLLTRKLDPAS-----------GIPFPDYLSSLGI  147 (356)
Q Consensus        82 ~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~---~~g~~a~~~~v~~~~~~~~i~~P~-----------~~s~~~~aa~l~~  147 (356)
                      ...|+|++|+|+++|+++++|++||||+.   ..|+|+||++++++.++++   |+           ++|+++ ||++++
T Consensus        74 ~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~---P~~~~~~~~~~~~~~~~~~-aa~l~~  149 (364)
T 1gu7_A           74 APCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKL---PNPAQSKANGKPNGLTINQ-GATISV  149 (364)
T ss_dssp             EECCSCCEEEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEE---CCHHHHHHTTCSCCCCHHH-HHTCTT
T ss_pred             cccCceeEEEEEEeCCCCCcCCCCCEEEecCCCCCcchheEecCHHHeEEc---CCccccccccccCCCCHHH-Hhhccc
Confidence            33445999999999999999999999994   2499999999999988665   77           899999 899999


Q ss_pred             hhhhHHHHHHHhCCCCCC-CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHHhCCCceeecCCh--
Q 042784          148 PGFAAWVGIEVLGQPKSG-SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN----VKLLKEEFGYDDAFNYNSE--  220 (356)
Q Consensus       148 ~~~ta~~~l~~~~~~~~g-~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~----~~~~~~~~g~~~v~~~~~~--  220 (356)
                      +++|||+++.+.+++++| ++|||+|++|++|++++|+||.+|++|++++++.++    .++++ ++|+++++|+++.  
T Consensus       150 ~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~-~lGa~~vi~~~~~~~  228 (364)
T 1gu7_A          150 NPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-ELGATQVITEDQNNS  228 (364)
T ss_dssp             HHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH-HHTCSEEEEHHHHHC
T ss_pred             cHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHH-hcCCeEEEecCccch
Confidence            999999999877799999 999999999999999999999999999988865543    67777 9999999998631  


Q ss_pred             hhHHHHHHHHC---CCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEec
Q 042784          221 MSFDAALTKYF---PNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMI  297 (356)
Q Consensus       221 ~~~~~~i~~~~---~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (356)
                      .++.+.+++++   ++++|+||||+|+.....++++++++|+++.+|......       ...+...++.+++++.++..
T Consensus       229 ~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~~~~~~l~~~G~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~g~~~  301 (364)
T 1gu7_A          229 REFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQP-------VTIPTSLYIFKNFTSAGFWV  301 (364)
T ss_dssp             GGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCC-------EEECHHHHHHSCCEEEECCH
T ss_pred             HHHHHHHHHHhhccCCCceEEEECCCchhHHHHHHHhccCCEEEEecCCCCCC-------cccCHHHHhhcCcEEEEEch
Confidence            46778888876   568999999999987678999999999999998754311       11234456778999998866


Q ss_pred             ccccc----hHHHHHHHHHHHHHcCCeeeeeeEEeCh---hhHHHHHHHHHcCCCcceEEEEe
Q 042784          298 GSHMD----RFADFTVEMESYIKEGKIRSKHVIYYGV---ESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       298 ~~~~~----~~~~~l~~~~~~~~~g~i~~~~~~~~~~---~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ..+..    ...+.++++++++.+|++++.+..++++   +++++||+.+.+++..||+|+++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          302 TELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             hHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence            54321    2246789999999999999877677766   49999999999888889999975

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2.4e-50  Score=366.75  Aligned_cols=312  Identities=18%  Similarity=0.230  Sum_probs=260.6

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..+     +.++.+++++.+.    |+|+++||||||.+++||++|++.+.|........|..+|  +|++|+|
T Consensus         1 MkA~~~~~~-----g~~~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G--~E~~G~V   69 (324)
T 3nx4_A            1 MQALILEQQ-----DGKTLASVQHLEE----SQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPG--IDFAGTV   69 (324)
T ss_dssp             CEEEEEEES-----SSSEEEEEEECCG----GGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCC--SEEEEEE
T ss_pred             CceEEEecC-----CCCceeeEeecCC----CCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCcccc--ceeEEEE
Confidence            688888876     3456789988865    7889999999999999999999999985432223344444  5999999


Q ss_pred             EEeccCCCCCCCCCEEEe--------ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHH--hCCC
Q 042784           93 RVIRSKDSKYSDGDIVLR--------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEV--LGQP  162 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~--------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~--~~~~  162 (356)
                      +++|  +++|++||||++        ..|+|+||++++++.++++   |+++|+++ ||++++.++|||+++..  ..++
T Consensus        70 ~~~G--v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~  143 (324)
T 3nx4_A           70 HASE--DPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDWLVAL---PAGLSSRN-AMIIGTAGFTAMLCVMALEDAGI  143 (324)
T ss_dssp             EEES--STTCCTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEEC---CTTCCHHH-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeC--CCCCCCCCEEEEcccccCCCCCCceeeEEecCHHHcEEC---CCCCCHHH-HHHhhhHHHHHHHHHHHhhhccc
Confidence            9998  578999999994        3599999999999988665   99999999 89999999999999863  3556


Q ss_pred             CCCC-EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          163 KSGS-NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       163 ~~g~-~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      ++++ +|||+|++|++|++++|+||.+|++|+++++++++.++++ ++|+++++|+++ .+.   +++++++++|++|||
T Consensus       144 ~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~-~~~---~~~~~~~~~d~v~d~  218 (324)
T 3nx4_A          144 RPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK-SLGANRILSRDE-FAE---SRPLEKQLWAGAIDT  218 (324)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTCSEEEEGGG-SSC---CCSSCCCCEEEEEES
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEEEecCC-HHH---HHhhcCCCccEEEEC
Confidence            6633 4999999999999999999999999999999999999999 899999999875 222   556666789999999


Q ss_pred             CchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-chHHHHHHHHHHHHHcCCe
Q 042784          242 VGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       242 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~i  320 (356)
                      +|++.++.++++++++|+++.+|......       ...+...++.|++++.++...... ....+.++++++++++|++
T Consensus       219 ~g~~~~~~~~~~l~~~G~iv~~G~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l  291 (324)
T 3nx4_A          219 VGDKVLAKVLAQMNYGGCVAACGLAGGFA-------LPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFY  291 (324)
T ss_dssp             SCHHHHHHHHHTEEEEEEEEECCCTTCSE-------EEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHH
T ss_pred             CCcHHHHHHHHHHhcCCEEEEEecCCCCC-------CCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999765411       123445667899999998654432 3345778999999999999


Q ss_pred             eeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          321 RSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       321 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      ++. +++|+|+++++||+.+.+++..||+|++++
T Consensus       292 ~~~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~  324 (324)
T 3nx4_A          292 AQA-ATEITLADAPKFADAIINNQVQGRTLVKIK  324 (324)
T ss_dssp             HHH-EEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             CCC-ceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence            987 889999999999999999999999999874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=1e-48  Score=362.74  Aligned_cols=313  Identities=16%  Similarity=0.211  Sum_probs=260.4

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      ++||++++..++       +.+++++.++    |+|+++||||||.+++||++|++++.|....   .++|...|+|++|
T Consensus         5 ~~mkA~~~~~~~-------~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~P~v~GhE~~G   70 (373)
T 2fzw_A            5 IKCKAAVAWEAG-------KPLSIEEIEV----APPKAHEVRIKIIATAVCHTDAYTLSGADPE---GCFPVILGHLGAG   70 (373)
T ss_dssp             EEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHHTCCTT---CCSSBCCCCEEEE
T ss_pred             cceEEEEEecCC-------CCcEEEEeeC----CCCCCCEEEEEEEEEEEchhhHHHhcCCCCC---CCCCccccccccE
Confidence            358898887643       4588988876    7789999999999999999999999875321   2234444459999


Q ss_pred             EEEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEe
Q 042784           91 IARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSL  120 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~  120 (356)
                      +|+++|++|++|++||||++.                                                  .|+|+||++
T Consensus        71 ~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~  150 (373)
T 2fzw_A           71 IVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTV  150 (373)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEE
T ss_pred             EEEEECCCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEE
Confidence            999999999999999999831                                                  278999999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      ++++.++++   |+++|+++ ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|+++++++
T Consensus       151 v~~~~~~~i---P~~l~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~  225 (373)
T 2fzw_A          151 VADISVAKI---DPLAPLDK-VCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINK  225 (373)
T ss_dssp             EEGGGEEEC---CTTSCHHH-HGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EchhheEEC---CCCCCHHH-HhhhccHHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            999988655   99999999 78999999999999987889999999999996 9999999999999999 899999999


Q ss_pred             HHHHHHHHHhCCCceeecCC-hhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEecccccccccccc
Q 042784          200 DNVKLLKEEFGYDDAFNYNS-EMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVWTER  276 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~-~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~  276 (356)
                      +++++++ ++|+++++|+++ ..++.+.+++++++++|+||||+|. ..++.++++++++ |+++.+|......      
T Consensus       226 ~~~~~~~-~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~------  298 (373)
T 2fzw_A          226 DKFARAK-EFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE------  298 (373)
T ss_dssp             GGHHHHH-HHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTC------
T ss_pred             HHHHHHH-HcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCc------
Confidence            9999999 999999999863 1468888998886799999999997 5889999999999 9999999754311      


Q ss_pred             cchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          277 DGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ....+...++.++ ++.++..+.+.  ..+.++++++++.+|+++  +.++++|+|+++++||+.+.+++. +|+|+++
T Consensus       299 ~~~~~~~~~~~~~-~i~g~~~~~~~--~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 2fzw_A          299 EIATRPFQLVTGR-TWKGTAFGGWK--SVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVKI  373 (373)
T ss_dssp             CEEECTHHHHTTC-EEEECSGGGCC--HHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-SEEEEEC
T ss_pred             eeeeCHHHHhcCC-EEEEeccCCCC--cHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            1112334455667 88887654321  246789999999999987  567889999999999999988775 7999874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=1.3e-48  Score=362.02  Aligned_cols=312  Identities=15%  Similarity=0.168  Sum_probs=259.9

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      ++||++++..++       +.+++++.++    |+|+++||||||.+++||++|++++.|....  ..|..+|  +|++|
T Consensus         7 ~~mkA~~~~~~g-------~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~G--hE~~G   71 (374)
T 2jhf_A            7 IKCKAAVLWEEK-------KPFSIEEVEV----APPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAG--HEAAG   71 (374)
T ss_dssp             EEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCC--CSEEE
T ss_pred             eeEEEEEEecCC-------CceEEEEccC----CCCCCCeEEEEEeEEeechhhHHHHcCCCCC--CCCcccC--cCceE
Confidence            458898887643       3588988876    7789999999999999999999999874321  1344455  59999


Q ss_pred             EEEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEe
Q 042784           91 IARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSL  120 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~  120 (356)
                      +|+++|++|++|++||||++.                                                  .|+|+||++
T Consensus        72 ~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~  151 (374)
T 2jhf_A           72 IVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTV  151 (374)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEE
T ss_pred             EEEEECCCCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEE
Confidence            999999999999999999831                                                  288999999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      ++++.++++   |+++|+++ ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++
T Consensus       152 v~~~~~~~i---P~~l~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~  226 (374)
T 2jhf_A          152 VDEISVAKI---DAASPLEK-VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINK  226 (374)
T ss_dssp             EEGGGEEEC---CTTCCHHH-HGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EchHHeEEC---CCCCCHHH-hhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            999988655   99999999 78999999999999987889999999999995 9999999999999999 899999999


Q ss_pred             HHHHHHHHHhCCCceeecCC-hhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEecccccccccccc
Q 042784          200 DNVKLLKEEFGYDDAFNYNS-EMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVWTER  276 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~-~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~  276 (356)
                      ++.++++ ++|+++++|+++ ..++.+.+++++++++|+||||+|. ..++.++++++++ |+++.+|......      
T Consensus       227 ~~~~~~~-~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~------  299 (374)
T 2jhf_A          227 DKFAKAK-EVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ------  299 (374)
T ss_dssp             GGHHHHH-HTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTC------
T ss_pred             HHHHHHH-HhCCceEecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCC------
Confidence            9999998 999999999863 1468888888886699999999997 5889999999999 9999998754311      


Q ss_pred             cchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          277 DGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ....+...++.++ ++.++....+.  ..+.++++++++.+|+++  +.++++|+|+++++||+.+.+++. +|+|+++
T Consensus       300 ~~~~~~~~~~~~~-~i~g~~~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~  374 (374)
T 2jhf_A          300 NLSMNPMLLLSGR-TWKGAIFGGFK--SKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGES-IRTILTF  374 (374)
T ss_dssp             CEEECTHHHHTTC-EEEECSGGGCC--HHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             ccccCHHHHhcCC-eEEEeccCCCC--hHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            1112334456677 88887654332  246789999999999987  467889999999999999988774 7999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=3.4e-49  Score=362.45  Aligned_cols=300  Identities=16%  Similarity=0.168  Sum_probs=254.9

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +||+|++....       +.+++++++.    |+|+++||||||.+++||++|++.+.|.... ...|..+|  +|++|+
T Consensus         4 ~mka~~~~~~~-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G--~E~~G~   69 (348)
T 3two_A            4 QSKGFAIFSKD-------EHFKPHDFSR----HAVGPRDVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPG--HEIAGI   69 (348)
T ss_dssp             EEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEEECHHHHHHHTTSSSC-CCSSBCCC--CCEEEE
T ss_pred             EEEEEEEccCC-------CCCeEEEeeC----CCCCCCeEEEEEEEeeecccchhhhcCCCCC-CCCCeecC--cceeEE
Confidence            58999888653       6799999877    7899999999999999999999999975432 23344455  599999


Q ss_pred             EEEeccCCCCCCCCCEEEec---------------------------------------cCCeeeEEeecCCcccccCCC
Q 042784           92 ARVIRSKDSKYSDGDIVLRA---------------------------------------FLPVAEYSLLPCDLLTRKLDP  132 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~---------------------------------------~g~~a~~~~v~~~~~~~~i~~  132 (356)
                      |+++|+++++|++||||++.                                       .|+|+||++++++.++++   
T Consensus        70 V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~i---  146 (348)
T 3two_A           70 IKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISV---  146 (348)
T ss_dssp             EEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEEC---
T ss_pred             EEEECCCCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEEC---
Confidence            99999999999999999731                                       199999999999988665   


Q ss_pred             CCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Q 042784          133 ASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       133 P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      |+++++++ ||++++++.|||+++. ..++++|++|||+|+ |++|++++|+||.+|++|+++++++++.++++ ++|++
T Consensus       147 P~~~~~~~-aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~  222 (348)
T 3two_A          147 DKNAPLEK-VAPLLCAGITTYSPLK-FSKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-SMGVK  222 (348)
T ss_dssp             CTTSCHHH-HGGGGTHHHHHHHHHH-HTTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-HTTCS
T ss_pred             CCCCCHHH-hhhhhhhHHHHHHHHH-hcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hcCCC
Confidence            99999999 7899999999999997 468999999999997 99999999999999999999999999999999 89999


Q ss_pred             ceeecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEeccc-ccccccccccchhhhhhhh-ccc
Q 042784          213 DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMIS-QYNKVWTERDGVRNLLNMI-GKE  289 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~-~~~  289 (356)
                      .++ . +...    +.    .++|+||||+|.. .++.++++++++|+++.+|... ..       ....+...++ .++
T Consensus       223 ~v~-~-~~~~----~~----~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-------~~~~~~~~~~~~~~  285 (348)
T 3two_A          223 HFY-T-DPKQ----CK----EELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEV-------APVLSVFDFIHLGN  285 (348)
T ss_dssp             EEE-S-SGGG----CC----SCEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGG-------CCEEEHHHHHHTCS
T ss_pred             eec-C-CHHH----Hh----cCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCC-------cccCCHHHHHhhCC
Confidence            888 3 2121    11    2799999999997 9999999999999999999865 31       1113445556 899


Q ss_pred             eEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          290 VKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +++.++...+.     +.++++++++.+|++++.+ ++|+++++++||+.+.+++..||+|+++++
T Consensus       286 ~~i~g~~~~~~-----~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~  345 (348)
T 3two_A          286 RKVYGSLIGGI-----KETQEMVDFSIKHNIYPEI-DLILGKDIDTAYHNLTHGKAKFRYVIDMKK  345 (348)
T ss_dssp             CEEEECCSCCH-----HHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHHHHHTTCCCSEEEEEGGG
T ss_pred             eEEEEEecCCH-----HHHHHHHHHHHhCCCCceE-EEEEHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            99999876543     5688999999999999866 699999999999999999999999999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-48  Score=362.22  Aligned_cols=311  Identities=16%  Similarity=0.167  Sum_probs=259.6

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhh-hhcCCCCCCccCCCccCceeeee
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRA-TMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~-~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      ++||++++..++       +.+++++.++    |+|+++||||||.+++||++|++ .+.|...  ...|..+|  +|++
T Consensus         7 ~~mka~~~~~~~-------~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~--~~~P~v~G--hE~~   71 (374)
T 1cdo_A            7 IKCKAAVAWEAN-------KPLVIEEIEV----DVPHANEIRIKIIATGVCHTDLYHLFEGKHK--DGFPVVLG--HEGA   71 (374)
T ss_dssp             EEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHHTTCCT--TSCSEECC--CCEE
T ss_pred             ceeEEEEEecCC-------CCeEEEEeeC----CCCCCCEEEEEEeEEeechhhHHHHhCCCCC--CCCCcccC--ccce
Confidence            458898887653       3588988876    77899999999999999999999 8887432  22344455  5999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEE
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYS  119 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~  119 (356)
                      |+|+++|++|++|++||||++.                                                  .|+|+||+
T Consensus        72 G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~  151 (374)
T 1cdo_A           72 GIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYT  151 (374)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEE
T ss_pred             EEEEEECCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEE
Confidence            9999999999999999999831                                                  28899999


Q ss_pred             eecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCC
Q 042784          120 LLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGS  198 (356)
Q Consensus       120 ~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s  198 (356)
                      +++++.++++   |+++|+++ ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|++++++
T Consensus       152 ~v~~~~~~~~---P~~~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~  226 (374)
T 1cdo_A          152 VVNQIAVAKI---DPSAPLDT-VCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLN  226 (374)
T ss_dssp             EEEGGGEEEC---CTTCCHHH-HGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             EEchhheEEC---CCCCCHHH-HhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            9999988655   99999999 78999999999999987889999999999996 9999999999999999 89999999


Q ss_pred             hHHHHHHHHHhCCCceeecCC-hhhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccC-CEEEEEeccccccccccc
Q 042784          199 DDNVKLLKEEFGYDDAFNYNS-EMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVH-ARIILCGMISQYNKVWTE  275 (356)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~~-~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~  275 (356)
                      +++.++++ ++|+++++|+++ ..++.+.+++++++++|+||||+|. ..++.++++++++ |+++.+|.....      
T Consensus       227 ~~~~~~~~-~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~------  299 (374)
T 1cdo_A          227 PDKFEKAK-VFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLH------  299 (374)
T ss_dssp             GGGHHHHH-HTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSS------
T ss_pred             HHHHHHHH-HhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCC------
Confidence            99999999 999999999863 1468888888876689999999997 5889999999999 999999875431      


Q ss_pred             ccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          276 RDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                       ....+...++.++ ++.++....+.  ..+.++++++++.+|+++  +.++++|+|+++++||+.+.+++. +|+|+++
T Consensus       300 -~~~~~~~~~~~~~-~i~g~~~~~~~--~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  374 (374)
T 1cdo_A          300 -DVATRPIQLIAGR-TWKGSMFGGFK--GKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLSL  374 (374)
T ss_dssp             -CEEECHHHHHTTC-EEEECSGGGCC--HHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             -CcccCHHHHhcCC-eEEEEecCCCC--cHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCe-eEEEEeC
Confidence             1112334456677 88887654322  246789999999999987  567889999999999999988774 7999875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=2.3e-49  Score=365.72  Aligned_cols=309  Identities=15%  Similarity=0.093  Sum_probs=258.1

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCC--------CCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCcc
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAID--------SIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNL   82 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p--------~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~   82 (356)
                      .+||++++..        ++.+++++.+.    |        +|+++||||||.+++||++|++++.+...+....++|.
T Consensus         7 ~~mka~~~~~--------~~~l~~~~~~~----P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~   74 (363)
T 3m6i_A            7 KTNIGVFTNP--------QHDLWISEASP----SLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDH   74 (363)
T ss_dssp             SCCEEEEECT--------TCCEEEEECSS----CHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCE
T ss_pred             ccceeEEEeC--------CCcEEEEEecC----CccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCc
Confidence            4588988874        36799998865    7        88999999999999999999998874333333334454


Q ss_pred             CceeeeeEEEEEeccCCCCCCCCCEEEe------------------------------ccCCeeeEEeecCCcccccCCC
Q 042784           83 NQVILAFGIARVIRSKDSKYSDGDIVLR------------------------------AFLPVAEYSLLPCDLLTRKLDP  132 (356)
Q Consensus        83 g~~~~~~G~v~~vg~~v~~~~~Gd~V~~------------------------------~~g~~a~~~~v~~~~~~~~i~~  132 (356)
                      ..|+|++|+|+++|+++++|++||||++                              ..|+|+||++++++.++++   
T Consensus        75 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~i---  151 (363)
T 3m6i_A           75 VLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKI---  151 (363)
T ss_dssp             ECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEEC---
T ss_pred             ccCcceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEEC---
Confidence            5555999999999999999999999984                              3589999999999988555   


Q ss_pred             CCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCC
Q 042784          133 ASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGY  211 (356)
Q Consensus       133 P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~  211 (356)
                      |+ +|+++ ||.+ .++.|||+++ +.+++++|++|||+|+ |++|++++|+||.+|++ |++++.++++.++++ ++ +
T Consensus       152 P~-~s~~~-aa~~-~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-~  224 (363)
T 3m6i_A          152 GN-MSYEN-GAML-EPLSVALAGL-QRAGVRLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-C  224 (363)
T ss_dssp             TT-CCHHH-HHHH-HHHHHHHHHH-HHHTCCTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-C
T ss_pred             CC-CCHHH-HHhh-hHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-c
Confidence            88 99999 5655 6889999999 5788999999999998 99999999999999995 999999999999999 88 7


Q ss_pred             CceeecC----ChhhHHHHHHHHCC-CCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh
Q 042784          212 DDAFNYN----SEMSFDAALTKYFP-NGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM  285 (356)
Q Consensus       212 ~~v~~~~----~~~~~~~~i~~~~~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  285 (356)
                      +.+++|.    +..++.+.++++++ +++|+||||+|++ .++.++++++++|+++.+|.....        ...+...+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~--------~~~~~~~~  296 (363)
T 3m6i_A          225 PEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNE--------IQIPFMRA  296 (363)
T ss_dssp             TTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSC--------CCCCHHHH
T ss_pred             hhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCC--------ccccHHHH
Confidence            7777764    23678899999884 5999999999987 789999999999999999975431        12345567


Q ss_pred             hccceEEEEEecccccchHHHHHHHHHHHHHcCCe--eeeeeEEeChhhHHHHHHHHHcC-CCcceEEEEecC
Q 042784          286 IGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKI--RSKHVIYYGVESFLESLGSLFSS-SNIGKVVIQVKA  355 (356)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i--~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~~~~  355 (356)
                      +.+++++.++...      .+.++++++++.+|++  ++.++++|+|+++++||+.+.++ ...+|+|++.++
T Consensus       297 ~~~~~~i~g~~~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  363 (363)
T 3m6i_A          297 SVREVDLQFQYRY------CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE  363 (363)
T ss_dssp             HHHTCEEEECCSC------SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred             HhcCcEEEEccCC------HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence            7889999887543      2457889999999998  56788999999999999999987 677899999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-49  Score=359.68  Aligned_cols=316  Identities=19%  Similarity=0.173  Sum_probs=264.6

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..+     +.++.+++++.+.    |+|+++||+|||.+++||++|++.+.|.+.   ...+|...|+|++|+|
T Consensus         2 Mka~~~~~~-----g~~~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V   69 (327)
T 1qor_A            2 ATRIEFHKH-----GGPEVLQAVEFTP----ADPAENEIQVENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIV   69 (327)
T ss_dssp             CEEEEBSSC-----CSGGGCEEEECCC----CCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CSSSSBCCCSCEEEEE
T ss_pred             cEEEEEcCC-----CChhheEEeccCC----CCCCCCEEEEEEEEEecCHHHHHHhCCCCC---CCCCCCCCCceeEEEE
Confidence            678887764     3456789988755    778999999999999999999999987542   1223444445999999


Q ss_pred             EEeccCCCCCCCCCEEEec---cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEE
Q 042784           93 RVIRSKDSKYSDGDIVLRA---FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVF  169 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  169 (356)
                      +++|+++++|++||||...   .|+|+||++++++.++++   |+++|+++ ||+++++++|||+++.+.+++++|++||
T Consensus        70 ~~vG~~v~~~~~GdrV~~~g~~~G~~aey~~v~~~~~~~i---P~~l~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vl  145 (327)
T 1qor_A           70 SKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAIL---PAAISFEQ-AAASFLKGLTVYYLLRKTYEIKPDEQFL  145 (327)
T ss_dssp             EEECTTCCSCCTTCEEEESCCSSCCSBSEEEEEGGGEEEC---CTTSCHHH-HHHHHHHHHHHHHHHHTTSCCCTTCEEE
T ss_pred             EEECCCCCCCCCCCEEEECCCCCceeeeEEEecHHHcEEC---CCCCCHHH-HHHhhhHHHHHHHHHHHhhCCCCCCEEE
Confidence            9999999999999999733   399999999999988655   99999999 7899999999999998788999999999


Q ss_pred             EEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHH
Q 042784          170 VSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLE  248 (356)
Q Consensus       170 V~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~  248 (356)
                      |+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.++|+.+ .++.+.+.+.++ +++|++|||+|...++
T Consensus       146 V~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~D~vi~~~g~~~~~  223 (327)
T 1qor_A          146 FHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVINYRE-EDLVERLKEITGGKKVRVVYDSVGRDTWE  223 (327)
T ss_dssp             ESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETTT-SCHHHHHHHHTTTCCEEEEEECSCGGGHH
T ss_pred             EECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEECCC-ccHHHHHHHHhCCCCceEEEECCchHHHH
Confidence            9999999999999999999999999999999999998 799998999887 678888888774 4899999999988999


Q ss_pred             HHHHhcccCCEEEEEecccccccccccccchhhhhhhhcc-ceEEEEEeccccc---chHHHHHHHHHHHHHcCCeeeee
Q 042784          249 AVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGK-EVKMEGFMIGSHM---DRFADFTVEMESYIKEGKIRSKH  324 (356)
Q Consensus       249 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~g~i~~~~  324 (356)
                      .++++++++|+++.+|...+..       ...+...++.+ ++++.+.....+.   ....+.++++++++.+|++++.+
T Consensus       224 ~~~~~l~~~G~iv~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i  296 (327)
T 1qor_A          224 RSLDCLQRRGLMVSFGNSSGAV-------TGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDV  296 (327)
T ss_dssp             HHHHTEEEEEEEEECCCTTCCC-------CCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             HHHHHhcCCCEEEEEecCCCCC-------CccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCccccc
Confidence            9999999999999999764311       11233345556 7777655432221   22456789999999999999999


Q ss_pred             e--EEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          325 V--IYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       325 ~--~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +  ++|+|+++++||+.+.+++..||+|+++
T Consensus       297 ~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          297 AEQQKYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             CGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             ccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            8  8999999999999999988899999874

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=7.2e-49  Score=360.30  Aligned_cols=309  Identities=21%  Similarity=0.170  Sum_probs=257.5

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcC-CCC-CCccCCCccCceee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG-TND-GLYFPQFNLNQVIL   87 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g-~~~-~~~~~~~~~g~~~~   87 (356)
                      |.+||++++..++       ..+++++.++    |+|+++||||||.+++||++|++.+.| .+. .....|..+|  +|
T Consensus         2 m~~mka~~~~~~g-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G--~E   68 (348)
T 2d8a_A            2 SEKMVAIMKTKPG-------YGAELVEVDV----PKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMG--HE   68 (348)
T ss_dssp             -CEEEEEEECSSS-------SSCEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECC--CE
T ss_pred             CCcceEEEEECCC-------CCEEEEECCC----CCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccC--cc
Confidence            4568999988653       2788988866    778999999999999999999999987 221 0112344445  59


Q ss_pred             eeEEEEEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCc
Q 042784           88 AFGIARVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPF  138 (356)
Q Consensus        88 ~~G~v~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~  138 (356)
                      ++|+|+++|+++++|++||||++.                             .|+|+||++++++.++++   |+++|+
T Consensus        69 ~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~  145 (348)
T 2d8a_A           69 VAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKN---PKSIPP  145 (348)
T ss_dssp             EEEEEEEECTTCCSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEEC---CTTSCH
T ss_pred             ceEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEEC---CCCCCH
Confidence            999999999999999999999941                             389999999999988655   999999


Q ss_pred             cccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeec
Q 042784          139 PDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNY  217 (356)
Q Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~  217 (356)
                      ++ ||.+ .++.|||+++ +.+++ +|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++ ++|+++++|+
T Consensus       146 ~~-aa~~-~~~~ta~~~l-~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~Ga~~~~~~  219 (348)
T 2d8a_A          146 EY-ATLQ-EPLGNAVDTV-LAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KVGADYVINP  219 (348)
T ss_dssp             HH-HTTH-HHHHHHHHHH-TTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HHTCSEEECT
T ss_pred             HH-HHhh-hHHHHHHHHH-HhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEECC
Confidence            98 5655 5888999999 57889 9999999999 9999999999999999 9999999999999999 9999999998


Q ss_pred             CChhhHHHHHHHHCCC-CceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhh-hhhhccceEEEE
Q 042784          218 NSEMSFDAALTKYFPN-GIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNL-LNMIGKEVKMEG  294 (356)
Q Consensus       218 ~~~~~~~~~i~~~~~~-~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  294 (356)
                      ++ .++.+.+++++++ ++|+||||+|. ..++.++++++++|+++.+|.....        ...+. ..++.+++++.+
T Consensus       220 ~~-~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--------~~~~~~~~~~~~~~~i~g  290 (348)
T 2d8a_A          220 FE-EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGK--------VTIDFNNLIIFKALTIYG  290 (348)
T ss_dssp             TT-SCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSC--------CCCCHHHHTTTTTCEEEE
T ss_pred             CC-cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCC--------cccCchHHHHhCCcEEEE
Confidence            87 6788889988854 89999999997 6889999999999999999875431        12234 556788999988


Q ss_pred             EecccccchHHHHHHHHHHHHHcCCe--eeeeeEEeC-hhhHHHHHHHHHcCCCcceEEEEec
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGKI--RSKHVIYYG-VESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~i--~~~~~~~~~-~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      +....    ..+.++++++++.+|++  ++.++++|+ |+++++||+.+.+ +..||+|++++
T Consensus       291 ~~~~~----~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~-~~~gKvvi~~~  348 (348)
T 2d8a_A          291 ITGRH----LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRA-GKTGKVVFMLK  348 (348)
T ss_dssp             CCCCC----SHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHT-TCCSEEEEEC-
T ss_pred             ecCCC----cHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhC-CCceEEEEeeC
Confidence            75432    14568899999999995  577888999 9999999999977 56899999864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=5e-49  Score=362.37  Aligned_cols=311  Identities=15%  Similarity=0.111  Sum_probs=256.7

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      |++||++++...        +.+++++.+.    |+|+++||||||.+++||++|++.+.|...+.+..++|...|+|++
T Consensus         5 ~~~mka~~~~~~--------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~   72 (356)
T 1pl8_A            5 KPNNLSLVVHGP--------GDLRLENYPI----PEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEAS   72 (356)
T ss_dssp             CCCCEEEEEEET--------TEEEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEE
T ss_pred             ccCceEEEEecC--------CcEEEEEccC----CCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceE
Confidence            345899998852        5788888755    7889999999999999999999988742222111223334445999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCcc
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFP  139 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~  139 (356)
                      |+|+++|++|++|++||||++.                              .|+|+||++++++.++++   |+++|++
T Consensus        73 G~V~~vG~~V~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~i---P~~l~~~  149 (356)
T 1pl8_A           73 GTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKL---PDNVTFE  149 (356)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEEC---CTTSCHH
T ss_pred             EEEEEECCCCCCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEEC---cCCCCHH
Confidence            9999999999999999999841                              489999999999988655   9999999


Q ss_pred             ccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecC
Q 042784          140 DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYN  218 (356)
Q Consensus       140 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~  218 (356)
                      + || +..++.|||+++ +.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++ ++|+++++|++
T Consensus       150 ~-aa-~~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~  224 (356)
T 1pl8_A          150 E-GA-LIEPLSVGIHAC-RRGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIGADLVLQIS  224 (356)
T ss_dssp             H-HH-HHHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEECS
T ss_pred             H-HH-hhchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEcCc
Confidence            8 55 447889999999 5788999999999996 9999999999999999 9999999999999999 99999999987


Q ss_pred             C--hhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEE
Q 042784          219 S--EMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGF  295 (356)
Q Consensus       219 ~--~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      .  ..++.+.+++.+++++|+|||++|.. .++.++++++++|+++.+|....        ....+...++.+++++.++
T Consensus       225 ~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--------~~~~~~~~~~~~~~~i~g~  296 (356)
T 1pl8_A          225 KESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSE--------MTTVPLLHAAIREVDIKGV  296 (356)
T ss_dssp             SCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCS--------CCCCCHHHHHHTTCEEEEC
T ss_pred             ccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCC--------CCccCHHHHHhcceEEEEe
Confidence            2  26777888887767899999999985 78999999999999999987432        1123445667889999887


Q ss_pred             ecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          296 MIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      ...      .+.++++++++++|+++  +.++++|+|+++++||+.+.++ ..||+|+++++
T Consensus       297 ~~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~-~~gKvvi~~~~  351 (356)
T 1pl8_A          297 FRY------CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKG-LGLKIMLKCDP  351 (356)
T ss_dssp             CSC------SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTT-CCSEEEEECCT
T ss_pred             ccc------HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCC-CceEEEEeCCC
Confidence            543      13478899999999864  6778899999999999999988 78999999864

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=5.1e-49  Score=373.06  Aligned_cols=325  Identities=17%  Similarity=0.150  Sum_probs=265.0

Q ss_pred             eeeeeeEEEecccCC------CCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCC------------
Q 042784           10 TVESKEWYISAYASD------GVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGT------------   71 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~------------   71 (356)
                      +.+||++++...+..      ....++.+++++++.    |+|+++||||||.+++||++|++...+.            
T Consensus        22 p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~----P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           22 PDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPM----PELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             CSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             ChhheeeeeeccccccccccccCCCCCCceEEeccC----CCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            467999999976411      112235799999876    7899999999999999999997543210            


Q ss_pred             CCCCcc--CCCc-cCceeeeeEEEEEeccCCCCCCCCCEEEec-----------------------------cCCeeeEE
Q 042784           72 NDGLYF--PQFN-LNQVILAFGIARVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYS  119 (356)
Q Consensus        72 ~~~~~~--~~~~-~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~  119 (356)
                      ..+.+.  .++| ...|+|++|+|+++|++|++|++||||++.                             .|+|+||+
T Consensus        98 ~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~  177 (447)
T 4a0s_A           98 RQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYG  177 (447)
T ss_dssp             TTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEE
T ss_pred             ccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeee
Confidence            011111  1233 234459999999999999999999999941                             49999999


Q ss_pred             eecCCcccccCCCCCCCCccccccccCchhhhHHHHHHH--hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC
Q 042784          120 LLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEV--LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG  197 (356)
Q Consensus       120 ~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~  197 (356)
                      +++++.++++   |+++++++ ||+++++++|||+++..  .+++++|++|||+|++|++|++++|+|+..|++|+++++
T Consensus       178 ~v~~~~~~~i---P~~ls~~~-aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~  253 (447)
T 4a0s_A          178 VVRASQLLPK---PAHLTWEE-AAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS  253 (447)
T ss_dssp             EEEGGGEEEC---CTTSCHHH-HHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ecCHHHcEEC---CCCCCHHH-HHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            9999988655   99999999 78888999999999964  388999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhCCCceeecCCh-----------------hhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEE
Q 042784          198 SDDNVKLLKEEFGYDDAFNYNSE-----------------MSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARI  260 (356)
Q Consensus       198 s~~~~~~~~~~~g~~~v~~~~~~-----------------~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~  260 (356)
                      ++++.++++ ++|++.++|+.+.                 ..+.+.+++.+++++|++|||+|...++.++++++++|++
T Consensus       254 ~~~~~~~~~-~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~~~~~~~~l~~~G~i  332 (447)
T 4a0s_A          254 SAQKEAAVR-ALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTV  332 (447)
T ss_dssp             SHHHHHHHH-HTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHHHHHHHHHSCTTCEE
T ss_pred             CHHHHHHHH-hcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCEE
Confidence            999999998 9999999987541                 1136778887777899999999999999999999999999


Q ss_pred             EEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHH
Q 042784          261 ILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSL  340 (356)
Q Consensus       261 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~  340 (356)
                      +.+|...+..       ...+...++.+++++.++...+.     +.+.++++++++|++++.++++|+|+++++||+.+
T Consensus       333 v~~G~~~~~~-------~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~  400 (447)
T 4a0s_A          333 VTCGSSSGYL-------HTFDNRYLWMKLKKIVGSHGANH-----EEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVV  400 (447)
T ss_dssp             EESCCTTCSE-------EEEEHHHHHHTTCEEEECCSCCH-----HHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHH
T ss_pred             EEEecCCCcc-------cccCHHHHHhCCCEEEecCCCCH-----HHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHH
Confidence            9999765411       12244556778888888765543     44668999999999999999999999999999999


Q ss_pred             HcCCCcceEEEEecC
Q 042784          341 FSSSNIGKVVIQVKA  355 (356)
Q Consensus       341 ~~~~~~gkvvi~~~~  355 (356)
                      .+++..||+|+.+.+
T Consensus       401 ~~~~~~GKvvv~~~~  415 (447)
T 4a0s_A          401 QTSRQVGKVAVLCMA  415 (447)
T ss_dssp             HTTCCSSEEEEESSC
T ss_pred             hcCCCceEEEEEeCC
Confidence            999999999999864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.7e-48  Score=358.37  Aligned_cols=310  Identities=13%  Similarity=0.074  Sum_probs=256.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhh-hhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRA-TMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~-~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      ||++++..+        +.+++++.+.    |+|+++||||||.+++||++|++ ...|...    .++|...|+|++|+
T Consensus         1 MkA~~~~~~--------~~~~~~e~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~----~~~p~v~G~E~~G~   64 (352)
T 3fpc_A            1 MKGFAMLSI--------GKVGWIEKEK----PAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG----ERHNMILGHEAVGE   64 (352)
T ss_dssp             CEEEEEEET--------TEEEEEECCC----CCCCTTCEEEEEEEEECCHHHHHHHHSCTTC----CCSSEECCCEEEEE
T ss_pred             CeEEEEccC--------CCceEEeCCC----CCCCCCeEEEEeCEEeEcccchHHHhCCCCC----CCCCcccCCcceEE
Confidence            688888865        4578887755    78999999999999999999999 5566432    23344444599999


Q ss_pred             EEEeccCCCCCCCCCEEEe--------------------------------ccCCeeeEEeecCC--cccccCCCCCCCC
Q 042784           92 ARVIRSKDSKYSDGDIVLR--------------------------------AFLPVAEYSLLPCD--LLTRKLDPASGIP  137 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~--------------------------------~~g~~a~~~~v~~~--~~~~~i~~P~~~s  137 (356)
                      |+++|+++++|++||||++                                ..|+|+||++++++  .++++   |++++
T Consensus        65 V~~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~i---P~~~~  141 (352)
T 3fpc_A           65 VVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHL---PKEIP  141 (352)
T ss_dssp             EEEECTTCCSCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEEC---CTTSC
T ss_pred             EEEECCCCCcCCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEEC---CCCCC
Confidence            9999999999999999984                                24899999999975  66444   99999


Q ss_pred             ccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceee
Q 042784          138 FPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFN  216 (356)
Q Consensus       138 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~  216 (356)
                      +++ ||+++.++.|||+++ +.+++++|++|||+|+ |++|++++|+||.+|+ +|++++++++++++++ ++|+++++|
T Consensus       142 ~~~-aa~~~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~  217 (352)
T 3fpc_A          142 LEA-AVMIPDMMTTGFHGA-ELANIKLGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL-EYGATDIIN  217 (352)
T ss_dssp             HHH-HTTTTTHHHHHHHHH-HHTTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH-HHTCCEEEC
T ss_pred             HHH-HhhccchhHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCceEEc
Confidence            999 788889999999999 5789999999999996 9999999999999999 8999999999999999 999999999


Q ss_pred             cCChhhHHHHHHHHCCC-CceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          217 YNSEMSFDAALTKYFPN-GIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       217 ~~~~~~~~~~i~~~~~~-~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      +++ .++.+.+++++++ ++|+||||+|. ..++.++++++++|+++.+|.......   .+ .....+....+++++.+
T Consensus       218 ~~~-~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~---~~-~~~~~~~~~~~~~~i~g  292 (352)
T 3fpc_A          218 YKN-GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDN---ID-IPRSEWGVGMGHKHIHG  292 (352)
T ss_dssp             GGG-SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSE---EE-EETTTTGGGTBCEEEEE
T ss_pred             CCC-cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCc---ee-cchhHhhhhccccEEEE
Confidence            987 7899999999855 89999999998 589999999999999999997654210   00 11111223457788877


Q ss_pred             EecccccchHHHHHHHHHHHHHcCCeeee--eeEEeC-hhhHHHHHHHHHcCCCc-ceEEEEec
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGKIRSK--HVIYYG-VESFLESLGSLFSSSNI-GKVVIQVK  354 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~i~~~--~~~~~~-~~~~~~a~~~~~~~~~~-gkvvi~~~  354 (356)
                      +....    ..+.++++++++.+|++++.  ++++|+ |+++++||+.+.+++.. +|+|++++
T Consensus       293 ~~~~~----~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          293 GLCPG----GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA  352 (352)
T ss_dssp             BCCCC----HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred             eeccC----chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence            65422    23568999999999999874  788999 99999999999886654 89999874

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=5.9e-48  Score=355.52  Aligned_cols=333  Identities=29%  Similarity=0.516  Sum_probs=268.9

Q ss_pred             eeeeeeEEE-ecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCC-Cc--cCCCccCc
Q 042784           10 TVESKEWYI-SAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDG-LY--FPQFNLNQ   84 (356)
Q Consensus        10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~-~~--~~~~~~g~   84 (356)
                      |++||++++ ..++..+.+.++.+++++.+.    |+| +++||||||.+++||++|++.+.|.. + .+  ..++|...
T Consensus         6 ~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~----P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~-g~~~~~~~~~p~v~   80 (357)
T 2zb4_A            6 AMIVQRVVLNSRPGKNGNPVAENFRMEEVYL----PDNINEGQVQVRTLYLSVDPYMRCRMNEDT-GTDYITPWQLSQVV   80 (357)
T ss_dssp             CCEEEEEEECCCCCTTSCCCGGGEEEEEEEC----CSCCCTTEEEEEEEEEECCTTHHHHTSSSC-SSSSSCCCCBTSBC
T ss_pred             cccceEEEEeccCCCCCCCCcCceEEEeecC----CCCCCCCeEEEEEEEEecCHHHHhhccccc-cccccCCCCCCccc
Confidence            446999998 443111222237899998866    677 99999999999999999998776521 1 11  12334445


Q ss_pred             eeeeeEEEEEeccCCCCCCCCCEEEeccCCeeeEEeecCCcccccCCCCCCC-----CccccccccCchhhhHHHHHHHh
Q 042784           85 VILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGI-----PFPDYLSSLGIPGFAAWVGIEVL  159 (356)
Q Consensus        85 ~~~~~G~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~~~i~~P~~~-----s~~~~aa~l~~~~~ta~~~l~~~  159 (356)
                      |+|++|+|++  +++++|++||||+...|+|+||++++++.++++   |+++     +++  +|+++++++|||+++.+.
T Consensus        81 G~E~~G~V~~--~~v~~~~vGdrV~~~~G~~aey~~v~~~~~~~i---P~~~~~~~~~~~--~a~l~~~~~ta~~al~~~  153 (357)
T 2zb4_A           81 DGGGIGIIEE--SKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKV---DPQLVDGHLSYF--LGAIGMPGLTSLIGIQEK  153 (357)
T ss_dssp             EEEEEEEEEE--ECSTTCCTTCEEEEEEEESBSEEEEEGGGCEEC---CGGGGTTCGGGG--GTTTSHHHHHHHHHHHHH
T ss_pred             cccEEEEEEe--cCCCCCCCCCEEEecCCCcEEEEEEchHHceec---CcccccCchhHH--HHhcccHHHHHHHHHHHh
Confidence            5699999999  889999999999954589999999999988655   8888     554  589999999999999778


Q ss_pred             CCCCCC--CEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCce
Q 042784          160 GQPKSG--SNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       160 ~~~~~g--~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      +++++|  ++|||+|++|++|++++|+++..|+ +|+++++++++.+.+++++|++.++|+.+ .++.+.+.+.+++++|
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~~~~d  232 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK-DNVAEQLRESCPAGVD  232 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT-SCHHHHHHHHCTTCEE
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc-hHHHHHHHHhcCCCCC
Confidence            999999  9999999999999999999999999 99999999999999984499999999887 6788888888866899


Q ss_pred             EEEECCchhhHHHHHHhcccCCEEEEEecccccccccccc-cc-hhhhhhhhccceEEEEEecccccchHHHHHHHHHHH
Q 042784          237 VYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTER-DG-VRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESY  314 (356)
Q Consensus       237 ~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (356)
                      ++|||+|...++.++++++++|+++.+|.........+.. .. ......++.+++++.++....+.....+.+++++++
T Consensus       233 ~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l  312 (357)
T 2zb4_A          233 VYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQW  312 (357)
T ss_dssp             EEEESCCHHHHHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHhccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865411000000 00 000235677899999887655444456789999999


Q ss_pred             HHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          315 IKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       315 ~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +.+|++++.+..+|+|+++++||+.+.+++..||+|+++++
T Consensus       313 ~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  353 (357)
T 2zb4_A          313 FKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISE  353 (357)
T ss_dssp             HHTTCCCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEECCC
T ss_pred             HHcCCCcCccceecCHHHHHHHHHHHHcCCCCceEEEEEec
Confidence            99999999888889999999999999998888999999865

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=4e-49  Score=374.19  Aligned_cols=325  Identities=16%  Similarity=0.170  Sum_probs=266.0

Q ss_pred             eeeeeeEEEecccCCCC--------CCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCC---------
Q 042784           10 TVESKEWYISAYASDGV--------PTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTN---------   72 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~---------   72 (356)
                      +.+||++++......-+        +..+.++++++++    |+|+++||||||.+++||++|++...+..         
T Consensus        28 P~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~----P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~  103 (456)
T 3krt_A           28 PESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPV----PELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER  103 (456)
T ss_dssp             CSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECC----CCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHH
T ss_pred             CcceEEEEEeccccccccccccccCCCCCCcEEEEccC----CCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhh
Confidence            46799999997521111        1236889998866    78999999999999999999987643210         


Q ss_pred             ---CCCc--cCCCc-cCceeeeeEEEEEeccCCCCCCCCCEEEec-----------------------------cCCeee
Q 042784           73 ---DGLY--FPQFN-LNQVILAFGIARVIRSKDSKYSDGDIVLRA-----------------------------FLPVAE  117 (356)
Q Consensus        73 ---~~~~--~~~~~-~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~  117 (356)
                         .+.+  ..++| ...|+|++|+|+++|+++++|++||||++.                             +|+|+|
T Consensus       104 ~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~ae  183 (456)
T 3krt_A          104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAE  183 (456)
T ss_dssp             HHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBS
T ss_pred             ccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCcccc
Confidence               0100  11233 234459999999999999999999999941                             499999


Q ss_pred             EEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHh--CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEE
Q 042784          118 YSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVL--GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS  195 (356)
Q Consensus       118 ~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~  195 (356)
                      |++++++.++++   |+++++++ ||+++++++|||+++...  +++++|++|||+|++|++|++++|+|+..|++|+++
T Consensus       184 y~~v~~~~~~~~---P~~l~~~~-aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~  259 (456)
T 3krt_A          184 IALVKSNQLMPK---PDHLSWEE-AAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICV  259 (456)
T ss_dssp             EEEEEGGGEEEC---CTTSCHHH-HHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             eEEechHHeeEC---CCCCCHHH-HHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEE
Confidence            999999998665   99999999 788888999999999754  789999999999999999999999999999999999


Q ss_pred             eCChHHHHHHHHHhCCCceeecCCh----------------hhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCC
Q 042784          196 TGSDDNVKLLKEEFGYDDAFNYNSE----------------MSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHA  258 (356)
Q Consensus       196 ~~s~~~~~~~~~~~g~~~v~~~~~~----------------~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G  258 (356)
                      ++++++.++++ ++|++.++|+.+.                ..+.+.++++++ .++|+||||+|.+.+..++++++++|
T Consensus       260 ~~~~~~~~~~~-~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~~~~~~~~l~~~G  338 (456)
T 3krt_A          260 VSSPQKAEICR-AMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGG  338 (456)
T ss_dssp             ESSHHHHHHHH-HHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHHHHHHHHHEEEEE
T ss_pred             ECCHHHHHHHH-hhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchhHHHHHHHhhCCc
Confidence            99999999998 9999999998762                124578888875 59999999999999999999999999


Q ss_pred             EEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHH
Q 042784          259 RIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLG  338 (356)
Q Consensus       259 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~  338 (356)
                      +++.+|...+..       ...+...++.+++++.++...+.     +.+.++++++.+|++++.++++|+|+++++|++
T Consensus       339 ~iv~~G~~~~~~-------~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~  406 (456)
T 3krt_A          339 TITTCASTSGYM-------HEYDNRYLWMSLKRIIGSHFANY-----REAWEANRLIAKGRIHPTLSKVYSLEDTGQAAY  406 (456)
T ss_dssp             EEEESCCTTCSE-------EEEEHHHHHHTTCEEEECCSCCH-----HHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHH
T ss_pred             EEEEEecCCCcc-------cccCHHHHHhcCeEEEEeccCCH-----HHHHHHHHHHHcCCcccceeEEEcHHHHHHHHH
Confidence            999999765411       12244556677888888776543     335578999999999999999999999999999


Q ss_pred             HHHcCCCcceEEEEecC
Q 042784          339 SLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       339 ~~~~~~~~gkvvi~~~~  355 (356)
                      .+.+++..||+|+.+.+
T Consensus       407 ~l~~~~~~GKvvv~~~~  423 (456)
T 3krt_A          407 DVHRNLHQGKVGVLCLA  423 (456)
T ss_dssp             HHHTTCSSSEEEEESSC
T ss_pred             HHHhCCCCCcEEEEeCC
Confidence            99999999999998764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.5e-48  Score=358.75  Aligned_cols=310  Identities=15%  Similarity=0.139  Sum_probs=254.9

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +||++++...        +.+++++.+.    |+|+++||||||.+++||++|++.+.|...+....++|...|+|++|+
T Consensus         4 ~mka~~~~~~--------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~   71 (352)
T 1e3j_A            4 DNLSAVLYKQ--------NDLRLEQRPI----PEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGT   71 (352)
T ss_dssp             CCEEEEEEET--------TEEEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEE
T ss_pred             cCEEEEEEcC--------CcEEEEEecC----CCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEE
Confidence            5899998853        5688888755    788999999999999999999998874222211223344444599999


Q ss_pred             EEEeccCCCCCCCCCEEEe------------------------------ccCCeeeEEeecCCcccccCCCCCCCCcccc
Q 042784           92 ARVIRSKDSKYSDGDIVLR------------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDY  141 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~------------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~  141 (356)
                      |+++|+++++|++||||++                              ..|+|+||++++++.++++   |+++|+++ 
T Consensus        72 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-  147 (352)
T 1e3j_A           72 VVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKL---PDNVSLEE-  147 (352)
T ss_dssp             EEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEEC---CTTSCHHH-
T ss_pred             EEEeCCCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEEC---cCCCCHHH-
Confidence            9999999999999999983                              1489999999999988655   99999998 


Q ss_pred             ccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          142 LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       142 aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      || +..++.|||+++ +.+++++|++|||+|+ |++|++++|+|+.+|++|++++++++++++++ ++|+++++|+++..
T Consensus       148 aa-~~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~~~  223 (352)
T 1e3j_A          148 GA-LLEPLSVGVHAC-RRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTLVVDPAK  223 (352)
T ss_dssp             HH-THHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEECCTTT
T ss_pred             HH-hhchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhCCCEEEcCcccc
Confidence            45 446889999999 5788999999999997 99999999999999999999999999999999 99999999987324


Q ss_pred             hHHHHHHHHCC----CCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEe
Q 042784          222 SFDAALTKYFP----NGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFM  296 (356)
Q Consensus       222 ~~~~~i~~~~~----~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (356)
                      ++.+.+++.++    +++|+||||+|.. .++.++++++++|+++.+|.....        ...+...++.+++++.++.
T Consensus       224 ~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~--------~~~~~~~~~~~~~~i~g~~  295 (352)
T 1e3j_A          224 EEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQM--------VTVPLVNACAREIDIKSVF  295 (352)
T ss_dssp             SCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSC--------CCCCHHHHHTTTCEEEECC
T ss_pred             cHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCC--------ccccHHHHHhcCcEEEEec
Confidence            56667777653    5899999999986 789999999999999999874321        1233456778899998865


Q ss_pred             cccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCC-CcceEEEEecC
Q 042784          297 IGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSS-NIGKVVIQVKA  355 (356)
Q Consensus       297 ~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~~~~  355 (356)
                      ..      .+.++++++++.+|+++  +.++++|+|+++++||+.+.+++ ..+|+|+++++
T Consensus       296 ~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  351 (352)
T 1e3j_A          296 RY------CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ  351 (352)
T ss_dssp             SC------SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred             cc------hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            43      13478899999999864  67788999999999999999887 68999999864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.7e-48  Score=359.40  Aligned_cols=311  Identities=15%  Similarity=0.163  Sum_probs=261.7

Q ss_pred             cceeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceee
Q 042784            8 LETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVIL   87 (356)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~   87 (356)
                      |+..+||++++..++       +.+++++.+.    |+|+++||||||.+++||++|++.+.|.+. .  .++|...|+|
T Consensus        13 ~~~~~mka~~~~~~g-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~--~~~P~v~GhE   78 (380)
T 1vj0_A           13 MMGLKAHAMVLEKFN-------QPLVYKEFEI----SDIPRGSILVEILSAGVCGSDVHMFRGEDP-R--VPLPIILGHE   78 (380)
T ss_dssp             -CCEEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTCEEEEEEEEEECHHHHHHHTTCCT-T--CCSSBCCCCE
T ss_pred             HhhhheEEEEEecCC-------CCeEEEEccC----CCCCCCEEEEEEeEEeecccchHHhcCCCC-C--CCCCcccCcC
Confidence            445678888887642       4799998866    778999999999999999999999987432 1  2234444459


Q ss_pred             eeEEEEEeccCCC------CCCCCCEEEec--------------------------------------cCCeeeEEee-c
Q 042784           88 AFGIARVIRSKDS------KYSDGDIVLRA--------------------------------------FLPVAEYSLL-P  122 (356)
Q Consensus        88 ~~G~v~~vg~~v~------~~~~Gd~V~~~--------------------------------------~g~~a~~~~v-~  122 (356)
                      ++|+|+++| +|+      +|++||||++.                                      .|+|+||+++ +
T Consensus        79 ~~G~V~~vG-~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~  157 (380)
T 1vj0_A           79 GAGRVVEVN-GEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDP  157 (380)
T ss_dssp             EEEEEEEES-SCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECT
T ss_pred             cEEEEEEeC-CccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcc
Confidence            999999999 999      89999999941                                      4899999999 9


Q ss_pred             CCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCC-CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChH
Q 042784          123 CDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQ-PKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDD  200 (356)
Q Consensus       123 ~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~  200 (356)
                      ++.++++   |+++|+++ .|++..++.|||+++. .++ +++|++|||+| +|++|++++|+||.+|+ +|++++++++
T Consensus       158 ~~~~~~i---P~~l~~~~-~Aa~~~~~~ta~~al~-~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~  231 (380)
T 1vj0_A          158 ETDVLKV---SEKDDLDV-LAMAMCSGATAYHAFD-EYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPN  231 (380)
T ss_dssp             TCCEEEE---CTTSCHHH-HHHHTTHHHHHHHHHH-TCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             cceEEEC---CCCCChHH-hHhhhcHHHHHHHHHH-hcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHH
Confidence            9888665   99999993 2555559999999995 678 99999999999 69999999999999995 9999999999


Q ss_pred             HHHHHHHHhCCCceeecC---ChhhHHHHHHHHCCC-CceEEEECCch-hhHHHHHHhcccCCEEEEEeccc-ccccccc
Q 042784          201 NVKLLKEEFGYDDAFNYN---SEMSFDAALTKYFPN-GIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMIS-QYNKVWT  274 (356)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~---~~~~~~~~i~~~~~~-~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~  274 (356)
                      ++++++ ++|++.+++++   + .++.+.+++++++ ++|+||||+|. ..++.++++++++|+++.+|... ...    
T Consensus       232 ~~~~~~-~lGa~~vi~~~~~~~-~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~----  305 (380)
T 1vj0_A          232 RLKLAE-EIGADLTLNRRETSV-EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDP----  305 (380)
T ss_dssp             HHHHHH-HTTCSEEEETTTSCH-HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCC----
T ss_pred             HHHHHH-HcCCcEEEeccccCc-chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCC----
Confidence            999999 99999999987   4 7888899998865 89999999997 58999999999999999999865 211    


Q ss_pred             cccchhhhhh-hhccceEEEEEecccccchHHHHHHHHHHHHHc--CCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEE
Q 042784          275 ERDGVRNLLN-MIGKEVKMEGFMIGSHMDRFADFTVEMESYIKE--GKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVI  351 (356)
Q Consensus       275 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  351 (356)
                         ...+... ++.+++++.++...+     .+.++++++++.+  |++++.++++|+|+++++||+.+.+++.. |+|+
T Consensus       306 ---~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~-Kvvl  376 (380)
T 1vj0_A          306 ---VPFKVYEWLVLKNATFKGIWVSD-----TSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREAL-KVIL  376 (380)
T ss_dssp             ---EEECHHHHTTTTTCEEEECCCCC-----HHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHTSCS-CEEE
T ss_pred             ---eeEchHHHHHhCCeEEEEeecCC-----HHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcCCCc-eEEE
Confidence               1223445 778999999876543     3678999999999  99999999999999999999999988888 9999


Q ss_pred             Eec
Q 042784          352 QVK  354 (356)
Q Consensus       352 ~~~  354 (356)
                      +++
T Consensus       377 ~~~  379 (380)
T 1vj0_A          377 YPE  379 (380)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=5.6e-49  Score=362.55  Aligned_cols=306  Identities=13%  Similarity=0.056  Sum_probs=256.8

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEE--eeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRS--ASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVIL   87 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~   87 (356)
                      +.+||++++..++       +.+++++  .+.    |+|+++||||||.+++||++|++.+.|.+.. ...|..+|  +|
T Consensus         4 p~~mka~~~~~~~-------~~l~~~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G--hE   69 (360)
T 1piw_A            4 PEKFEGIAIQSHE-------DWKNPKKTKYDP----KPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVG--HE   69 (360)
T ss_dssp             TTCEEEEEECCSS-------STTSCEEEEECC----CCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECC--CC
T ss_pred             ChheEEEEEecCC-------CCeeEEeccccC----CCCCCCeEEEEEEEeccchhhHHHhcCCCCC-CCCCcccC--cC
Confidence            3468999988653       3477877  644    7889999999999999999999999874321 12344455  59


Q ss_pred             eeEEEEEeccCCC-CCCCCCEEEec-------------------------------------cCCeeeEEeecCCccccc
Q 042784           88 AFGIARVIRSKDS-KYSDGDIVLRA-------------------------------------FLPVAEYSLLPCDLLTRK  129 (356)
Q Consensus        88 ~~G~v~~vg~~v~-~~~~Gd~V~~~-------------------------------------~g~~a~~~~v~~~~~~~~  129 (356)
                      ++|+|+++|++++ +|++||||++.                                     .|+|+||++++++.++++
T Consensus        70 ~~G~V~~vG~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~i  149 (360)
T 1piw_A           70 IVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPI  149 (360)
T ss_dssp             EEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEEC
T ss_pred             ceEEEEEeCCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEEC
Confidence            9999999999999 99999999421                                     388999999999888655


Q ss_pred             CCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh
Q 042784          130 LDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF  209 (356)
Q Consensus       130 i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~  209 (356)
                         |+++|+++ ||++++++.|||+++.. +++++|++|||+|+ |++|++++|+||.+|++|++++++++++++++ ++
T Consensus       150 ---P~~~~~~~-aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~-~l  222 (360)
T 1piw_A          150 ---PENIPSHL-AAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KM  222 (360)
T ss_dssp             ---CTTSCHHH-HGGGGTHHHHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HH
T ss_pred             ---CCCCCHHH-hhhhhhhHHHHHHHHHH-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-Hc
Confidence               99999999 78999999999999975 88999999999999 99999999999999999999999999999999 89


Q ss_pred             CCCceeecCChh-hHHHHHHHHCCCCceEEEECCch---hhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh
Q 042784          210 GYDDAFNYNSEM-SFDAALTKYFPNGIDVYLDNVGG---KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM  285 (356)
Q Consensus       210 g~~~v~~~~~~~-~~~~~i~~~~~~~~d~vld~~g~---~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  285 (356)
                      |+++++|+++ . ++.+.+.    +++|+||||+|.   ..++.++++++++|+++.+|.... .       ...+...+
T Consensus       223 Ga~~v~~~~~-~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~-------~~~~~~~~  289 (360)
T 1piw_A          223 GADHYIATLE-EGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-H-------EMLSLKPY  289 (360)
T ss_dssp             TCSEEEEGGG-TSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-S-------CCEEECGG
T ss_pred             CCCEEEcCcC-chHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-c-------cccCHHHH
Confidence            9999999875 4 5555443    579999999998   588899999999999999987542 1       01233456


Q ss_pred             hccceEEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhh--HHHHHHHHHcCCCcceEEEEecC
Q 042784          286 IGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVES--FLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~--~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +.+++++.++...+     .+.++++++++.+|++++.+ ++|+|++  +++||+.+.+++..||+|+++++
T Consensus       290 ~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~~  355 (360)
T 1piw_A          290 GLKAVSISYSALGS-----IKELNQLLKLVSEKDIKIWV-ETLPVGEAGVHEAFERMEKGDVRYRFTLVGYD  355 (360)
T ss_dssp             GCBSCEEEECCCCC-----HHHHHHHHHHHHHTTCCCCE-EEEESSHHHHHHHHHHHHHTCCSSEEEEECCH
T ss_pred             HhCCeEEEEEecCC-----HHHHHHHHHHHHhCCCcceE-EEEeccHhHHHHHHHHHHCCCCceEEEEecCc
Confidence            78899998876543     35688999999999999988 8999999  99999999998888999999864

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=5.9e-48  Score=355.19  Aligned_cols=306  Identities=18%  Similarity=0.166  Sum_probs=253.8

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      ++|+++...       +.++.+++++++.    |+|+++||||||.+++||++|++.+.|.+.. ...|+.+|  +|++|
T Consensus         8 m~~~a~~~~-------~~~~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~G--hE~~G   73 (357)
T 2cf5_A            8 RKTTGWAAR-------DPSGILSPYTYTL----RETGPEDVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPG--HEVVG   73 (357)
T ss_dssp             CEEEEEEEC-------STTCCEEEEEEEC----CCCCTTEEEEEEEEEEECHHHHHHHTCTTTC-CCSSBCCC--CEEEE
T ss_pred             ceeEEEEEc-------cCCCCcEEEEecC----CCCCCCEEEEEEEEEeecchhhhhhcCCCCC-CCCCeecC--cceeE
Confidence            345665554       2347899988866    7889999999999999999999999874321 22344455  59999


Q ss_pred             EEEEeccCCCCCCCCCEEEe-------------------------------------ccCCeeeEEeecCCcccccCCCC
Q 042784           91 IARVIRSKDSKYSDGDIVLR-------------------------------------AFLPVAEYSLLPCDLLTRKLDPA  133 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~-------------------------------------~~g~~a~~~~v~~~~~~~~i~~P  133 (356)
                      +|+++|+++++|++||||++                                     ..|+|+||++++++.++++   |
T Consensus        74 ~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~---P  150 (357)
T 2cf5_A           74 EVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKI---P  150 (357)
T ss_dssp             EEEEECSSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEEC---C
T ss_pred             EEEEECCCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEEC---c
Confidence            99999999999999999973                                     2489999999999988655   9


Q ss_pred             CCCCccccccccCchhhhHHHHHHHhCCCC-CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Q 042784          134 SGIPFPDYLSSLGIPGFAAWVGIEVLGQPK-SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       134 ~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      +++|+++ ||++++++.|||+++.. .+++ +|++|||+|+ |++|++++|+||.+|++|+++++++++++.+++++|++
T Consensus       151 ~~ls~~~-aa~l~~~~~ta~~~l~~-~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~  227 (357)
T 2cf5_A          151 EGMAVEQ-AAPLLCAGVTVYSPLSH-FGLKQPGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGAD  227 (357)
T ss_dssp             SSCCHHH-HTGGGTHHHHHHHHHHH-TSTTSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCS
T ss_pred             CCCCHHH-hhhhhhhHHHHHHHHHh-cCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCc
Confidence            9999999 78999999999999974 6788 9999999996 99999999999999999999999999998887689999


Q ss_pred             ceeecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceE
Q 042784          213 DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVK  291 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (356)
                      +++++++ .   +.+++++ +++|+||||+|.. .++.++++++++|+++.+|.....       ....+.. ++.++++
T Consensus       228 ~vi~~~~-~---~~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-------~~~~~~~-~~~~~~~  294 (357)
T 2cf5_A          228 DYVIGSD-Q---AKMSELA-DSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNP-------LQFLTPL-LMLGRKV  294 (357)
T ss_dssp             CEEETTC-H---HHHHHST-TTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSC-------CCCCHHH-HHHHTCE
T ss_pred             eeecccc-H---HHHHHhc-CCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCC-------ccccCHH-HHhCccE
Confidence            9999875 2   2455555 4799999999985 789999999999999999875431       1112334 7788999


Q ss_pred             EEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          292 MEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +.++...+     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++++
T Consensus       295 i~g~~~~~-----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  352 (357)
T 2cf5_A          295 ITGSFIGS-----MKETEEMLEFCKEKGLSSII-EVVKMDYVNTAFERLEKNDVRYRFVVDVEG  352 (357)
T ss_dssp             EEECCSCC-----HHHHHHHHHHHHHTTCCCCE-EEEEGGGHHHHHHHHHTTCSSSEEEEETTS
T ss_pred             EEEEccCC-----HHHHHHHHHHHHcCCCCCce-EEEeHHHHHHHHHHHHCCCCceEEEEeCCc
Confidence            98876543     35678899999999999876 599999999999999999889999999864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=1.3e-47  Score=353.91  Aligned_cols=306  Identities=17%  Similarity=0.142  Sum_probs=254.1

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      +|+++.+..+     +.++.+++++++.    |+|+++||||||.+++||++|++.+.|.+.. ...|..+|  +|++|+
T Consensus        14 ~mk~~~~~~~-----~~~~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~G--hE~~G~   81 (366)
T 1yqd_A           14 PVKAFGWAAR-----DQSGHLSPFNFSR----RATGEEDVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPG--HEIVGE   81 (366)
T ss_dssp             SEEEEEEEEC-----STTCCEEEEEEEE----CCCCTTEEEEEEEEEEECHHHHHHHHTSSSC-CCSSBCCC--CCEEEE
T ss_pred             CeeEEEEEEc-----CCCCCcEEEEccC----CCCCCCeEEEEEEEEeechhhHHHHcCCCCC-CCCCEecc--cceEEE
Confidence            3555555543     2347899988866    7889999999999999999999999874322 22344455  599999


Q ss_pred             EEEeccCCCCCCCCCEEEe-------------------------------------ccCCeeeEEeecCCcccccCCCCC
Q 042784           92 ARVIRSKDSKYSDGDIVLR-------------------------------------AFLPVAEYSLLPCDLLTRKLDPAS  134 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~-------------------------------------~~g~~a~~~~v~~~~~~~~i~~P~  134 (356)
                      |+++|++|++|++||||++                                     ..|+|+||++++++.++++   |+
T Consensus        82 V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~---P~  158 (366)
T 1yqd_A           82 VTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRF---PD  158 (366)
T ss_dssp             EEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEEC---CT
T ss_pred             EEEECCCCCcCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEEC---CC
Confidence            9999999999999999973                                     2489999999999888655   99


Q ss_pred             CCCccccccccCchhhhHHHHHHHhCCCC-CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc
Q 042784          135 GIPFPDYLSSLGIPGFAAWVGIEVLGQPK-SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD  213 (356)
Q Consensus       135 ~~s~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~  213 (356)
                      ++|+++ ||++++++.|||+++.. .+++ +|++|||+|+ |++|++++|+|+.+|++|+++++++++.+.+++++|++.
T Consensus       159 ~ls~~~-aa~l~~~~~ta~~al~~-~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~  235 (366)
T 1yqd_A          159 NMPLDG-GAPLLCAGITVYSPLKY-FGLDEPGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADS  235 (366)
T ss_dssp             TSCTTT-TGGGGTHHHHHHHHHHH-TTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSE
T ss_pred             CCCHHH-hhhhhhhHHHHHHHHHh-cCcCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCce
Confidence            999999 78999999999999975 5677 9999999996 999999999999999999999999999988776899999


Q ss_pred             eeecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          214 AFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       214 v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      ++|+.+ .   +.+++++ +++|+||||+|.. .++.++++++++|+++.+|.....        ...+...++.+++++
T Consensus       236 v~~~~~-~---~~~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--------~~~~~~~~~~~~~~i  302 (366)
T 1yqd_A          236 FLVSRD-Q---EQMQAAA-GTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKP--------LELPAFSLIAGRKIV  302 (366)
T ss_dssp             EEETTC-H---HHHHHTT-TCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSC--------EEECHHHHHTTTCEE
T ss_pred             EEeccC-H---HHHHHhh-CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCC--------CCcCHHHHHhCCcEE
Confidence            999875 2   2455555 3799999999985 789999999999999999875431        113445678899999


Q ss_pred             EEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      .++....     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|++++
T Consensus       303 ~g~~~~~-----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  358 (366)
T 1yqd_A          303 AGSGIGG-----MKETQEMIDFAAKHNITADI-EVISTDYLNTAMERLAKNDVRYRFVIDVG  358 (366)
T ss_dssp             EECCSCC-----HHHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred             EEecCCC-----HHHHHHHHHHHHcCCCCCce-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence            8876543     25678899999999999877 59999999999999999988999999875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.2e-48  Score=358.20  Aligned_cols=306  Identities=16%  Similarity=0.115  Sum_probs=255.7

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCC--CccCCCccCceeeeeE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDG--LYFPQFNLNQVILAFG   90 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~~~~~~G   90 (356)
                      ||++++..++       +++++++++.    |+|+++||||||.+++||++|++.+.|....  ....|..+|  +|++|
T Consensus         1 Mka~~~~~~g-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G--~E~~G   67 (343)
T 2dq4_A            1 MRALAKLAPE-------EGLTLVDRPV----PEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTG--HEFSG   67 (343)
T ss_dssp             CEEEEECSSS-------SSCEEEECCC----CCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECC--CEEEE
T ss_pred             CeEEEEeCCC-------CcEEEEeccC----CCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCC--ccceE
Confidence            6788887653       2288888755    7889999999999999999999999864210  112344455  59999


Q ss_pred             EEEEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCCCCCcccc
Q 042784           91 IARVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDY  141 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~  141 (356)
                      +|+++|+++++|++||||+.                             ..|+|+||++++++.++++   |+++|+++ 
T Consensus        68 ~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-  143 (343)
T 2dq4_A           68 VVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVN---PKDLPFEV-  143 (343)
T ss_dssp             EEEEECTTCCSSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEE---CTTSCHHH-
T ss_pred             EEEEECCCCCcCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEEC---CCCCCHHH-
Confidence            99999999999999999994                             1389999999999988665   99999998 


Q ss_pred             ccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCCh
Q 042784          142 LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSE  220 (356)
Q Consensus       142 aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~  220 (356)
                      ||.+ .++.|||+++.+.+++ +|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++ ++ +++++|+++ 
T Consensus       144 aa~~-~~~~ta~~~l~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~l-a~~v~~~~~-  217 (343)
T 2dq4_A          144 AAIL-EPFGNAVHTVYAGSGV-SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR-PY-ADRLVNPLE-  217 (343)
T ss_dssp             HTTH-HHHHHHHHHHHSTTCC-TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT-TT-CSEEECTTT-
T ss_pred             HHhh-hHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-HHhccCcCc-
Confidence            5555 6788999999757889 9999999999 9999999999999999 9999999999999998 88 999999986 


Q ss_pred             hhHHHHHHHHCCCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccccccccccccchhhh-hhhhccceEEEEEecc
Q 042784          221 MSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNL-LNMIGKEVKMEGFMIG  298 (356)
Q Consensus       221 ~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  298 (356)
                      .++.+.+++++++++|+|||++|. ..++.++++++++|+++.+|.....        ...+. ..++.+++++.++...
T Consensus       218 ~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--------~~~~~~~~~~~~~~~i~g~~~~  289 (343)
T 2dq4_A          218 EDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDP--------IRFDLAGELVMRGITAFGIAGR  289 (343)
T ss_dssp             SCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSC--------EEECHHHHTGGGTCEEEECCSC
T ss_pred             cCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCC--------ceeCcHHHHHhCceEEEEeecC
Confidence            678888888776689999999998 6889999999999999999875321        12334 5567889999887543


Q ss_pred             cccchHHHHHHHHHHHHHcCC--eeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          299 SHMDRFADFTVEMESYIKEGK--IRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       299 ~~~~~~~~~l~~~~~~~~~g~--i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      .    ..+.++++++++++|+  +++.++++|+|+++++||+.+.+++. ||+|++++
T Consensus       290 ~----~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvv~~~~  342 (343)
T 2dq4_A          290 R----LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQA-VKVILDPK  342 (343)
T ss_dssp             C----TTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSC-SEEEEETT
T ss_pred             C----CHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCc-eEEEEeeC
Confidence            1    2356889999999999  56788889999999999999998877 99999875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.1e-48  Score=355.38  Aligned_cols=309  Identities=18%  Similarity=0.173  Sum_probs=250.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      .+.+.+++++..++  .+.+++++++.    |+|+++||||||.+++||++|++.+.|.+.. ...|..+|  +|++|+|
T Consensus        18 ~~~~~~~a~~~~~~--~~~l~~~~~p~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~G--hE~~G~V   88 (369)
T 1uuf_A           18 KAGLKIKAVGAYSA--KQPLEPMDITR----REPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPG--HEIVGRV   88 (369)
T ss_dssp             -----CEEEEBSST--TSCCEEEECCC----CCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCC--CCEEEEE
T ss_pred             hcCceEEEEEEcCC--CCCcEEEEecC----CCCCCCeEEEEEEEEeecHHHHHHhcCCCCC-CCCCeecc--cCceEEE
Confidence            34445555542222  27899998865    7889999999999999999999999874321 12344444  5999999


Q ss_pred             EEeccCCCCCCCCCEEEe--------------------------------------ccCCeeeEEeecCCcccccCCCCC
Q 042784           93 RVIRSKDSKYSDGDIVLR--------------------------------------AFLPVAEYSLLPCDLLTRKLDPAS  134 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~--------------------------------------~~g~~a~~~~v~~~~~~~~i~~P~  134 (356)
                      +++|++|++|++||||++                                      ..|+|+||++++++.++++   |+
T Consensus        89 ~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~---P~  165 (369)
T 1uuf_A           89 VAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRI---RH  165 (369)
T ss_dssp             EEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEEC---CS
T ss_pred             EEECCCCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEEC---CC
Confidence            999999999999999983                                      1388999999999888655   99


Q ss_pred             C-CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc
Q 042784          135 G-IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD  213 (356)
Q Consensus       135 ~-~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~  213 (356)
                      + +|+++ ||+++++++|||+++.. .++++|++|||+|+ |++|++++|+|+.+|++|++++++++++++++ ++|++.
T Consensus       166 ~~ls~~~-aa~l~~~~~tA~~al~~-~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~lGa~~  241 (369)
T 1uuf_A          166 PQEQLAA-VAPLLCAGITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADE  241 (369)
T ss_dssp             CGGGHHH-HGGGGTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSE
T ss_pred             CCCCHHH-hhhhhhhHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcE
Confidence            9 99999 78999999999999975 68999999999997 99999999999999999999999999999999 899999


Q ss_pred             eeecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          214 AFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       214 v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      ++|+.+ .++.+   ++. +++|+||||+|.+ .++.++++++++|+++.+|.....       ....+...++.+++++
T Consensus       242 vi~~~~-~~~~~---~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-------~~~~~~~~~~~~~~~i  309 (369)
T 1uuf_A          242 VVNSRN-ADEMA---AHL-KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATP-------HKSPEVFNLIMKRRAI  309 (369)
T ss_dssp             EEETTC-HHHHH---TTT-TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC--------------CHHHHHTTTCEE
T ss_pred             Eecccc-HHHHH---Hhh-cCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCC-------ccccCHHHHHhCCcEE
Confidence            999986 44433   333 5799999999986 789999999999999999876431       1123445667899999


Q ss_pred             EEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      .++...+     .+.++++++++.+|++++.++ +|+|+++++||+.+.+++..||+|+++++
T Consensus       310 ~g~~~~~-----~~~~~~~~~l~~~g~i~~~i~-~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  366 (369)
T 1uuf_A          310 AGSMIGG-----IPETQEMLDFCAEHGIVADIE-MIRADQINEAYERMLRGDVKYRFVIDNRT  366 (369)
T ss_dssp             EECCSCC-----HHHHHHHHHHHHHHTCCCCEE-EECGGGHHHHHHHHHTTCSSSEEEEEGGG
T ss_pred             EEeecCC-----HHHHHHHHHHHHhCCCCcceE-EEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            9876543     256788999999999998775 79999999999999998888999999864

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-48  Score=354.64  Aligned_cols=316  Identities=17%  Similarity=0.244  Sum_probs=250.8

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      |.+||++++..++     ++..+++++.+.    |+|+++||||||.+++||++|++.+.|.....  .++|...|+|++
T Consensus         1 m~~mka~~~~~~g-----~~~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~~p~v~G~E~~   69 (328)
T 1xa0_A            1 MSAFQAFVVNKTE-----TEFTAGVQTISM----DDLPEGDVLVRVHYSSVNYKDGLASIPDGKIV--KTYPFVPGIDLA   69 (328)
T ss_dssp             CCEEEEEEEEEET-----TEEEEEEEEEEG----GGSCSCSEEEEEEEEECCHHHHHHTSGGGSSC--CSSSBCCCSEEE
T ss_pred             CCcceEEEEecCC-----CcceeEEEeccC----CCCCCCeEEEEEEEEecCHHHHHhhcCCCCCC--CCCCcccCcceE
Confidence            3468999998763     345788888866    67899999999999999999999988743211  223444445999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec--------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHH--h
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA--------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEV--L  159 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~--------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~--~  159 (356)
                      |+|+++  ++++|++||||++.        .|+|+||++++++.++++   |+++|+++ ||+++++++|||.++..  .
T Consensus        70 G~V~~~--~v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~---P~~l~~~~-aa~~~~~~~ta~~~l~~~~~  143 (328)
T 1xa0_A           70 GVVVSS--QHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPL---PKGLTLKE-AMAIGTAGFTAALSIHRLEE  143 (328)
T ss_dssp             EEEEEC--CSSSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEEC---CTTCCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEec--CCCCCCCCCEEEEccccCCCCCCccceeEEEechHHeEEC---CCCCCHHH-hhhhhhhHHHHHHHHHHHhh
Confidence            999995  56889999999932        489999999999988655   99999999 78999999999988753  4


Q ss_pred             CCCCCCC-EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEE
Q 042784          160 GQPKSGS-NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       160 ~~~~~g~-~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      +++++|+ +|||+|++|++|++++|+|+..|++|++++++++++++++ ++|+++++|+++ .+ .+.+++++++++|++
T Consensus       144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~lGa~~~i~~~~-~~-~~~~~~~~~~~~d~v  220 (328)
T 1xa0_A          144 HGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VLGAKEVLARED-VM-AERIRPLDKQRWAAA  220 (328)
T ss_dssp             TTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HTTCSEEEECC-----------CCSCCEEEE
T ss_pred             cCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCcEEEecCC-cH-HHHHHHhcCCcccEE
Confidence            6789997 9999999999999999999999999999999999999998 899999999875 32 344556666689999


Q ss_pred             EECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc-cchHHHHHHHHHHHHHc
Q 042784          239 LDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKE  317 (356)
Q Consensus       239 ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  317 (356)
                      |||+|.+.+..++++++++|+++.+|...+..       ...+...++.|++++.++..... .....+.++++.+++.+
T Consensus       221 id~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~-------~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  293 (328)
T 1xa0_A          221 VDPVGGRTLATVLSRMRYGGAVAVSGLTGGAE-------VPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKP  293 (328)
T ss_dssp             EECSTTTTHHHHHHTEEEEEEEEECSCCSSSC-------CCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCC
T ss_pred             EECCcHHHHHHHHHhhccCCEEEEEeecCCCC-------CCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999998764311       11233456778999988743222 22234567788888888


Q ss_pred             CCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEec
Q 042784          318 GKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       318 g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      + +++ ++++|+|+++++||+.+.+++..||+|++++
T Consensus       294 g-l~~-~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  328 (328)
T 1xa0_A          294 D-LER-IAQEISLAELPQALKRILRGELRGRTVVRLA  328 (328)
T ss_dssp             C-HHH-HEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred             C-Cce-eeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence            8 776 4689999999999999999888999999863

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=4.8e-48  Score=354.29  Aligned_cols=305  Identities=18%  Similarity=0.166  Sum_probs=233.2

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCC-CccCCCccCceeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDG-LYFPQFNLNQVILA   88 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~~~~~   88 (356)
                      |.+||++++..++       +.+++++.+.    |+|+++||||||.+++||++|++.+.|.+.. ....|..+|  +|+
T Consensus         1 m~~mka~~~~~~g-------~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G--~E~   67 (344)
T 2h6e_A            1 MVKSKAALLKKFS-------EPLSIEDVNI----PEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG--HEN   67 (344)
T ss_dssp             CEEEEBCEECSCC-------C-----EEEE----CCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECC--CCE
T ss_pred             CceeEEEEEecCC-------CCCeEEEeeC----CCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCcccc--ccc
Confidence            4468999888653       3588888866    7789999999999999999999999875421 112344444  599


Q ss_pred             eEEEEEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeec-CCcccccCCCCCCCCc
Q 042784           89 FGIARVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLP-CDLLTRKLDPASGIPF  138 (356)
Q Consensus        89 ~G~v~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~-~~~~~~~i~~P~~~s~  138 (356)
                      +|+|+++|++ ++|++||||+..                             .|+|+||++++ ++.++++    +++|+
T Consensus        68 ~G~V~~vG~~-~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i----~~l~~  142 (344)
T 2h6e_A           68 AGTIVEVGEL-AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL----NSLSP  142 (344)
T ss_dssp             EEEEEEECTT-CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE----SSSCH
T ss_pred             eEEEEEECCC-CCCCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe----CCCCH
Confidence            9999999999 999999999731                             48999999999 9887433    56999


Q ss_pred             cccccccCchhhhHHHHHHHh----CCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHhCCC
Q 042784          139 PDYLSSLGIPGFAAWVGIEVL----GQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       139 ~~~aa~l~~~~~ta~~~l~~~----~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      ++ ||++++++.|||+++...    +++ +|++|||+|+ |++|++++|+||.+  |++|++++++++++++++ ++|++
T Consensus       143 ~~-aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~-~lGa~  218 (344)
T 2h6e_A          143 VE-AAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-ELGAD  218 (344)
T ss_dssp             HH-HGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HHTCS
T ss_pred             HH-hhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-HhCCC
Confidence            99 789999999999999865    388 9999999998 99999999999999  999999999999999999 89999


Q ss_pred             ceeecCChhhHHHHHHHHC-CCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccce
Q 042784          213 DAFNYNSEMSFDAALTKYF-PNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEV  290 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (356)
                      +++|+++..++   +.+++ +.++|+||||+|.. .++.++++++++|+++.+|.....        ...+...++.+++
T Consensus       219 ~vi~~~~~~~~---~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--------~~~~~~~~~~~~~  287 (344)
T 2h6e_A          219 YVSEMKDAESL---INKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKR--------VSLEAFDTAVWNK  287 (344)
T ss_dssp             EEECHHHHHHH---HHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSC--------CCCCHHHHHHTTC
T ss_pred             EEeccccchHH---HHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCC--------cccCHHHHhhCCc
Confidence            99987531122   34444 34899999999987 899999999999999999875431        1234445678899


Q ss_pred             EEEEEecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          291 KMEGFMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ++.++...+     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++
T Consensus       288 ~i~g~~~~~-----~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          288 KLLGSNYGS-----LNDLEDVVRLSESGKIKPYI-IKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             EEEECCSCC-----HHHHHHHHHHHHTTSSCCCE-EEECC----------------CEEEECC
T ss_pred             EEEEEecCC-----HHHHHHHHHHHHcCCCCcce-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            998875543     36688999999999999998 8999999999999999888889999864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.6e-47  Score=351.13  Aligned_cols=309  Identities=17%  Similarity=0.193  Sum_probs=259.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCC-----CccCCCccCceee
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDG-----LYFPQFNLNQVIL   87 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~-----~~~~~~~~g~~~~   87 (356)
                      ||++++..++       +.+++++.+.    |+|+++||||||.+++||++|++++.|.+..     ....++|...|+|
T Consensus         1 Mka~~~~~~g-------~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e   69 (347)
T 1jvb_A            1 MRAVRLVEIG-------KPLSLQEIGV----PKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE   69 (347)
T ss_dssp             CEEEEECSTT-------SCCEEEECCC----CCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCE
T ss_pred             CeEEEEecCC-------CCeEEEEeeC----CCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCcccccc
Confidence            6788887653       3588888755    7889999999999999999999998874321     0011234444459


Q ss_pred             eeEEEEEeccCCCCCCCCCEEEe-----------------------------ccCCeeeEEeecC-CcccccCCCCCCCC
Q 042784           88 AFGIARVIRSKDSKYSDGDIVLR-----------------------------AFLPVAEYSLLPC-DLLTRKLDPASGIP  137 (356)
Q Consensus        88 ~~G~v~~vg~~v~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~-~~~~~~i~~P~~~s  137 (356)
                      ++|+|+++|+++++|++||||+.                             ..|+|+||+++++ +.+++ +   ++++
T Consensus        70 ~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~-i---~~~~  145 (347)
T 1jvb_A           70 IAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYK-L---RRLN  145 (347)
T ss_dssp             EEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEE-C---SSSC
T ss_pred             ceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEE-e---CCCC
Confidence            99999999999999999999972                             1389999999999 88743 3   5699


Q ss_pred             ccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceee
Q 042784          138 FPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFN  216 (356)
Q Consensus       138 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~  216 (356)
                      +++ ||++++++.|||+++. .+++++|++|||+|++|++|++++|+++.. |++|+++++++++.+.++ ++|++.++|
T Consensus       146 ~~~-aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~g~~~~~~  222 (347)
T 1jvb_A          146 AVE-AAPLTCSGITTYRAVR-KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVIN  222 (347)
T ss_dssp             HHH-HGGGGTHHHHHHHHHH-HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEEEE
T ss_pred             HHH-cccchhhHHHHHHHHH-hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCEEec
Confidence            999 7899999999999996 588999999999999779999999999999 999999999999999998 899999999


Q ss_pred             cCChhhHHHHHHHHCC-CCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          217 YNSEMSFDAALTKYFP-NGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       217 ~~~~~~~~~~i~~~~~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      +.+ .++.+.+.++++ +++|++||++|.. .++.++++++++|+++.+|.....      +  ..+...++.+++++.+
T Consensus       223 ~~~-~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~------~--~~~~~~~~~~~~~i~g  293 (347)
T 1jvb_A          223 ASM-QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGAD------L--HYHAPLITLSEIQFVG  293 (347)
T ss_dssp             TTT-SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCC------C--CCCHHHHHHHTCEEEE
T ss_pred             CCC-ccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCC------C--CCCHHHHHhCceEEEE
Confidence            887 677777888875 5899999999986 889999999999999999876510      1  2234456778999988


Q ss_pred             EecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +...+     .+.++++++++.+|++++.++++|+|+++++||+.+.+++..||+|+++
T Consensus       294 ~~~~~-----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          294 SLVGN-----QSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             CCSCC-----HHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EeccC-----HHHHHHHHHHHHcCCCCceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            76543     3668899999999999999999999999999999999998889999974

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=3.7e-49  Score=359.83  Aligned_cols=317  Identities=20%  Similarity=0.263  Sum_probs=256.5

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      |.+||++++..++     ++..+++++.+.    |+|+++||||||.+++||++|++.+.|.....  .++|...|+|++
T Consensus         2 ~~~mka~~~~~~g-----~~~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~~p~i~G~E~~   70 (330)
T 1tt7_A            2 STLFQALQAEKNA-----DDVSVHVKTIST----EDLPKDGVLIKVAYSGINYKDGLAGKAGGNIV--REYPLILGIDAA   70 (330)
T ss_dssp             CCEEEEEEECCGG-----GSCCCEEEEEES----SSSCSSSEEEEECCEEECHHHHHHTSTTCTTC--SSCSEECCSEEE
T ss_pred             CCcceEEEEecCC-----CCcceeEeecCC----CCCCCCEEEEEEEEEecCHHHHhhhcCCCCCc--CCCCccccceEE
Confidence            4569999998753     345789998866    77899999999999999999999988743211  223444445999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec--------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHH--h
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA--------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEV--L  159 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~--------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~--~  159 (356)
                      |+|+++  ++++|++||||++.        .|+|+||++++++.++++   |+++|+++ ||+++++++|||.++..  .
T Consensus        71 G~V~~~--~v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~l~~~~-aa~l~~~~~ta~~~l~~~~~  144 (330)
T 1tt7_A           71 GTVVSS--NDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPL---PQNLSLKE-AMVYGTAGFTAALSVHRLEQ  144 (330)
T ss_dssp             EEEEEC--SSTTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEEC---CTTCCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEc--CCCCCCCCCEEEEcccccCCCCCccceeEEEecHHHeEEC---CCCCCHHH-HhhccchHHHHHHHHHHHHh
Confidence            999996  46789999999932        489999999999988655   99999999 78999999999988753  4


Q ss_pred             CCCCCCC-EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEE
Q 042784          160 GQPKSGS-NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       160 ~~~~~g~-~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      +++++|+ +|||+|++|++|++++|+|+..|++|++++++++++++++ ++|+++++|+++ .+ .+.+++++++++|++
T Consensus       145 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~lGa~~v~~~~~-~~-~~~~~~~~~~~~d~v  221 (330)
T 1tt7_A          145 NGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK-QLGASEVISRED-VY-DGTLKALSKQQWQGA  221 (330)
T ss_dssp             TTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH-HHTCSEEEEHHH-HC-SSCCCSSCCCCEEEE
T ss_pred             cCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcEEEECCC-ch-HHHHHHhhcCCccEE
Confidence            6789997 9999999999999999999999999999999999999998 899999998753 11 222344455689999


Q ss_pred             EECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc-cchHHHHHHHHHHHHHc
Q 042784          239 LDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKE  317 (356)
Q Consensus       239 ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  317 (356)
                      |||+|++.+..++++++++|+++.+|...+..       ...+...++.|++++.++..... .....+.++++.+++.+
T Consensus       222 id~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~-------~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  294 (330)
T 1tt7_A          222 VDPVGGKQLASLLSKIQYGGSVAVSGLTGGGE-------VPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKP  294 (330)
T ss_dssp             EESCCTHHHHHHHTTEEEEEEEEECCCSSCSC-------EEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCC
T ss_pred             EECCcHHHHHHHHHhhcCCCEEEEEecCCCCc-------cCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999764311       11233456788999998753222 22234667888888889


Q ss_pred             CCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          318 GKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       318 g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      |++++.++++|+|+++++||+.+.+++..||+|+++
T Consensus       295 g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          295 DQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             SCSTTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             CCcccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            999999989999999999999999988899999864

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=1.5e-46  Score=344.65  Aligned_cols=328  Identities=38%  Similarity=0.652  Sum_probs=263.8

Q ss_pred             eeeeeEEEecccCCCCCCCC--CeEEE--EeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCC---ccCCCccC
Q 042784           11 VESKEWYISAYASDGVPTSD--HLKLR--SASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGL---YFPQFNLN   83 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~---~~~~~~~g   83 (356)
                      .+||+|.|+++..   ++++  .++++  +.+.  |.| |+++||||||.++++|+.|. ...|.....   ...|+.+|
T Consensus         3 ~~mka~~m~a~~~---~~p~~~~l~~~~~~~~~--P~~-~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G   75 (345)
T 2j3h_A            3 ATNKQVILKDYVS---GFPTESDFDFTTTTVEL--RVP-EGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPG   75 (345)
T ss_dssp             EEEEEEEECSCBS---SSCCGGGEEEEEEEEEC--CSC-SSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTT
T ss_pred             ccceEEEEecCCC---CCCCccceeEEEeecCC--CCC-CCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCC
Confidence            4699999999853   3344  68998  6655  323 89999999999999998875 344432111   12355566


Q ss_pred             ceeeeeEEEEE--eccCCCCCCCCCEEEeccCCeeeEEeecCCc--ccccCCCCC---CCCccccccccCchhhhHHHHH
Q 042784           84 QVILAFGIARV--IRSKDSKYSDGDIVLRAFLPVAEYSLLPCDL--LTRKLDPAS---GIPFPDYLSSLGIPGFAAWVGI  156 (356)
Q Consensus        84 ~~~~~~G~v~~--vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~--~~~~i~~P~---~~s~~~~aa~l~~~~~ta~~~l  156 (356)
                      |  |+.|++..  +|+++++|++||||+ ++|+|+||++++++.  +++ +  |+   +++++  +|+++++++|||+++
T Consensus        76 ~--e~~G~~~~GvV~~~v~~~~vGdrV~-~~g~~aey~~v~~~~~~~~~-i--p~~~~~~~~~--aa~l~~~~~ta~~al  147 (345)
T 2j3h_A           76 Q--PIQGYGVSRIIESGHPDYKKGDLLW-GIVAWEEYSVITPMTHAHFK-I--QHTDVPLSYY--TGLLGMPGMTAYAGF  147 (345)
T ss_dssp             S--BCEEEEEEEEEEECSTTCCTTCEEE-EEEESBSEEEECCCTTTCEE-E--CCCSSCTTGG--GTTTSHHHHHHHHHH
T ss_pred             C--eeecceEEEEEecCCCCCCCCCEEE-eecCceeEEEecccccceee-c--CCCCCCHHHH--HHhccccHHHHHHHH
Confidence            5  77788887  999999999999999 889999999999876  544 4  53   45554  478999999999999


Q ss_pred             HHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCce
Q 042784          157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       157 ~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      .+.+++++|++|||+|++|++|++++|+++..|++|+++++++++.+.+++++|++.++|+.+..++.+.+++.+++++|
T Consensus       148 ~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          148 YEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEE
T ss_pred             HHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCc
Confidence            87889999999999999999999999999999999999999999999997569999899987534677788887767899


Q ss_pred             EEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHH
Q 042784          237 VYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIK  316 (356)
Q Consensus       237 ~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (356)
                      ++|||+|...+..++++++++|+++.+|........  ......+...++.+++++.++...++.....+.++++++++.
T Consensus       228 ~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~--~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~  305 (345)
T 2j3h_A          228 IYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLE--NQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIR  305 (345)
T ss_dssp             EEEESSCHHHHHHHHTTEEEEEEEEECCCGGGTTCS--SCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHhcCCEEEEEccccccccC--CccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999876531100  001122344567788999887665544445677999999999


Q ss_pred             cCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          317 EGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       317 ~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +|++++.++.+|+|+++++||+.+.+++..||+|+++++
T Consensus       306 ~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  344 (345)
T 2j3h_A          306 EGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVAR  344 (345)
T ss_dssp             TTSSCCCEEEEESGGGSHHHHHHHHTTCCSSEEEEESSC
T ss_pred             CCCCcCcccccCCHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            999998888889999999999999999999999999875

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=5.1e-46  Score=339.46  Aligned_cols=324  Identities=32%  Similarity=0.541  Sum_probs=259.7

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +++||+|++..+. .+.+.++.+++++.+.    |+|+++||||||.+++||+.|+.. .    .....+..+|+  +++
T Consensus         5 ~~~mka~~~~~~~-~g~~~~~~l~~~e~~~----P~~~~~eVlVkv~a~gi~~~~~~~-~----~~~~~p~~~g~--e~~   72 (333)
T 1v3u_A            5 MVKAKSWTLKKHF-QGKPTQSDFELKTVEL----PPLKNGEVLLEALFLSVDPYMRIA-S----KRLKEGAVMMG--QQV   72 (333)
T ss_dssp             CCEEEEEEECC------CCGGGEEEEEEEC----CCCCTTCEEEEEEEEECCTHHHHH-T----TTCCTTSBCCC--CEE
T ss_pred             cccccEEEEeecC-CCCCCccceEEEeCCC----CCCCCCEEEEEEEEeccCHHHccc-c----CcCCCCccccc--ceE
Confidence            3458999998751 1223457899998866    778999999999999999988732 1    11123344554  788


Q ss_pred             EEEEEeccCCCCCCCCCEEEeccCCeeeEEeecCCcccccCCCCCC----CCccccccccCchhhhHHHHHHHhCCCCCC
Q 042784           90 GIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASG----IPFPDYLSSLGIPGFAAWVGIEVLGQPKSG  165 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~~~i~~P~~----~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g  165 (356)
                      |+|++.  ++++|++||||+ ++|+|+||++++++.++++   |++    +++++++|+++++++|||+++.+.+++++|
T Consensus        73 G~Vv~~--~v~~~~vGdrV~-~~g~~aey~~v~~~~~~~i---P~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g  146 (333)
T 1v3u_A           73 ARVVES--KNSAFPAGSIVL-AQSGWTTHFISDGKGLEKL---LTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGG  146 (333)
T ss_dssp             EEEEEE--SCTTSCTTCEEE-ECCCSBSEEEESSTTEEEC---C--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSS
T ss_pred             EEEEec--CCCCCCCCCEEE-ecCceEEEEEechHHeEEc---CcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCC
Confidence            888874  678999999999 8999999999999988555   886    888763489999999999999878899999


Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      ++|||+|++|++|++++++++..|++|+++++++++.+.++ ++|++.++|+.+..++.+.+.+.+++++|++|||+|.+
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~  225 (333)
T 1v3u_A          147 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGE  225 (333)
T ss_dssp             CEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCHH
T ss_pred             CEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCChH
Confidence            99999999999999999999999999999999999999996 89998889987535677888887766899999999999


Q ss_pred             hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc-chHHHHHHHHHHHHHcCCeeeee
Q 042784          246 MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEGKIRSKH  324 (356)
Q Consensus       246 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~i~~~~  324 (356)
                      .+..++++++++|+++.+|.......... +....+...++.+++++.++....+. ..+.+.++++++++.+|++++.+
T Consensus       226 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  304 (333)
T 1v3u_A          226 FLNTVLSQMKDFGKIAICGAISVYNRMDQ-LPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHE  304 (333)
T ss_dssp             HHHHHHTTEEEEEEEEECCCCC--------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCE
T ss_pred             HHHHHHHHHhcCCEEEEEeccccccCCCC-CCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCcc
Confidence            89999999999999999987653110000 00111345677899999998765543 34567889999999999999988


Q ss_pred             eEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          325 VIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       325 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ..+++|+++++||+.+.+++..||+|+++
T Consensus       305 ~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          305 HVTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             EEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             ccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            77899999999999999988899999974

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=1.5e-47  Score=354.92  Aligned_cols=319  Identities=21%  Similarity=0.252  Sum_probs=252.2

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEE-EEeeccccCCC-CCCCcEEEEEEEEEeChhhhhhhcCCCCC------------Cc
Q 042784           11 VESKEWYISAYASDGVPTSDHLKL-RSASVSLAIDS-IPDHHVAVETLWISIDPYLRATMTGTNDG------------LY   76 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~p~-~~~~eVlVkv~~~~i~~~d~~~~~g~~~~------------~~   76 (356)
                      .+||++++..+     +.++.+++ ++.+.    |. ++++||||||.+++||++|++.+.|....            ..
T Consensus        20 ~~mka~~~~~~-----g~~~~l~~~~~~p~----P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~   90 (375)
T 2vn8_A           20 FQSMAWVIDKY-----GKNEVLRFTQNMMM----PIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIK   90 (375)
T ss_dssp             CCEEEEEBSSC-----CSGGGCEEEEEECC----CCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCT
T ss_pred             ccceeEEeccC-----CCccceEEeccccC----CCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccc
Confidence            45888888765     34567888 87755    66 48999999999999999999999874210            01


Q ss_pred             cCCCccCceeeeeEEEEEeccCCCCCCCCCEEEec-----cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhh
Q 042784           77 FPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRA-----FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFA  151 (356)
Q Consensus        77 ~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~~-----~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~t  151 (356)
                      ...+|...|+|++|+|+++|+++++|++||||+..     .|+|+||++++++.++++   |+++++++ ||+++++++|
T Consensus        91 ~~~~P~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~G~~aey~~v~~~~~~~i---P~~ls~~~-Aa~l~~~~~t  166 (375)
T 2vn8_A           91 GEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHK---PKSLTHTQ-AASLPYVALT  166 (375)
T ss_dssp             TTTCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCTTSCCSSBSEEEEEGGGEEEC---CTTSCHHH-HTTSHHHHHH
T ss_pred             cccCCcccceeeeEEEEEeCCCCCCCCCCCEEEEecCCCCCccceeEEEEcHHHeeeC---CCCCCHHH-HhhhHHHHHH
Confidence            11134444559999999999999999999999932     599999999999988655   99999999 7899999999


Q ss_pred             HHHHHHHhCC----CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHH
Q 042784          152 AWVGIEVLGQ----PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAAL  227 (356)
Q Consensus       152 a~~~l~~~~~----~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i  227 (356)
                      ||+++.+.++    +++|++|||+||+|++|++++|+|+..|++|++++ ++++.++++ ++|++.++|+++ .++.+.+
T Consensus       167 A~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~-~lGa~~v~~~~~-~~~~~~~  243 (375)
T 2vn8_A          167 AWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVR-KLGADDVIDYKS-GSVEEQL  243 (375)
T ss_dssp             HHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH-HTTCSEEEETTS-SCHHHHH
T ss_pred             HHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHH-HcCCCEEEECCc-hHHHHHH
Confidence            9999977788    89999999999999999999999999999999998 788999998 999999999987 6777777


Q ss_pred             HHHCCCCceEEEECCchh--hHHHHHHhcccCCEEEEEecccccccccccccchhh----hhhhhc-------cceEEEE
Q 042784          228 TKYFPNGIDVYLDNVGGK--MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRN----LLNMIG-------KEVKMEG  294 (356)
Q Consensus       228 ~~~~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~  294 (356)
                      .+.  +++|++|||+|..  .+..++++++++|+++.+|...... . ........    ...++.       ++..+..
T Consensus       244 ~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  319 (375)
T 2vn8_A          244 KSL--KPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLN-M-DRLGIADGMLQTGVTVGSKALKHFWKGVHYRW  319 (375)
T ss_dssp             HTS--CCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHH-H-HHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhc--CCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccc-c-ccccccchhheeehhhccccccccccCcceEE
Confidence            653  5799999999987  4588899999999999998654310 0 00000000    011222       3333332


Q ss_pred             EecccccchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      ...    ....+.++++++++.+|++++.++++|+|+++++||+.+.+++..||+|+++
T Consensus       320 ~~~----~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          320 AFF----MASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             CCC----CCCHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             EEe----CCCHHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            211    1124678999999999999999999999999999999999988889999986

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=3.8e-47  Score=355.35  Aligned_cols=297  Identities=16%  Similarity=0.137  Sum_probs=247.5

Q ss_pred             CeEEEEeeccccCCC-CCCCcEEEEEEEEEeChhhhhhhcCCCCCCc----cCCCccCceeeeeEEEEEeccCC------
Q 042784           31 HLKLRSASVSLAIDS-IPDHHVAVETLWISIDPYLRATMTGTNDGLY----FPQFNLNQVILAFGIARVIRSKD------   99 (356)
Q Consensus        31 ~~~~~~~~~~~p~p~-~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~----~~~~~~g~~~~~~G~v~~vg~~v------   99 (356)
                      .++++++++    |+ |+++||||||.+++||++|++++.|...+..    ..++|...|+|++|+|+++|+++      
T Consensus        41 ~l~~~~~~~----P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~  116 (404)
T 3ip1_A           41 EVRVEEVPE----PRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTN  116 (404)
T ss_dssp             EEEEEEECC----CCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTT
T ss_pred             ceEEEEcCC----CCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccC
Confidence            688888765    77 9999999999999999999999986433221    12344445559999999999999      


Q ss_pred             CCCCCCCEEEe-----------------------------ccCCeeeEEeecCCcccccCCCCCCCC------ccccccc
Q 042784          100 SKYSDGDIVLR-----------------------------AFLPVAEYSLLPCDLLTRKLDPASGIP------FPDYLSS  144 (356)
Q Consensus       100 ~~~~~Gd~V~~-----------------------------~~g~~a~~~~v~~~~~~~~i~~P~~~s------~~~~aa~  144 (356)
                      ++|++||||++                             ..|+|+||++++++.++++   |++++      ..+ +|+
T Consensus       117 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~~~~~~~~~-aa~  192 (404)
T 3ip1_A          117 KRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSL---RELEGVYEGDRLFL-AGS  192 (404)
T ss_dssp             EECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEC---GGGBTTBCTHHHHH-HHH
T ss_pred             CCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEec---cccccccccccchh-HHh
Confidence            88999999994                             1589999999999888555   88775      344 689


Q ss_pred             cCchhhhHHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          145 LGIPGFAAWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       145 l~~~~~ta~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      ++.++.|||+++... +++++|++|||+|+ |++|++++|+||.+|+ +|++++.+++++++++ ++|+++++|+++ .+
T Consensus       193 l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~-~~  269 (404)
T 3ip1_A          193 LVEPTSVAYNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLAK-ELGADHVIDPTK-EN  269 (404)
T ss_dssp             THHHHHHHHHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHTCSEEECTTT-SC
T ss_pred             hhhHHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCCEEEcCCC-CC
Confidence            999999999999654 48999999999998 9999999999999999 9999999999999999 999999999987 78


Q ss_pred             HHHHHHHHCCC-CceEEEECCchh--hHHHHHHhc----ccCCEEEEEecccccccccccccchhhhhhhhccceEEEEE
Q 042784          223 FDAALTKYFPN-GIDVYLDNVGGK--MLEAVLNHV----NVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGF  295 (356)
Q Consensus       223 ~~~~i~~~~~~-~~d~vld~~g~~--~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      +.+.+++++++ ++|+||||+|.+  .+..+++++    +++|+++.+|.....        ...+...++.+++++.++
T Consensus       270 ~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~--------~~~~~~~~~~~~~~i~g~  341 (404)
T 3ip1_A          270 FVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAK--------IPLTGEVFQVRRAQIVGS  341 (404)
T ss_dssp             HHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSC--------EEECHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCC--------CcccHHHHhccceEEEEe
Confidence            99999999865 899999999987  677777777    999999999986541        123556677899999987


Q ss_pred             ecccccchHHHHHHHHHHHHHcCCee--eeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          296 MIGSHMDRFADFTVEMESYIKEGKIR--SKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~g~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      .....    .+.++++++++.+| ++  +.++++|+|+++++||+.+.    .||+|+++++
T Consensus       342 ~~~~~----~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~----~GKvvl~~~~  394 (404)
T 3ip1_A          342 QGHSG----HGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ----TDKSLVKVTM  394 (404)
T ss_dssp             CCCCS----TTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT----TCTTCSCEEE
T ss_pred             cCCCc----hHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh----CCcEEEecCC
Confidence            64332    24578899999999 64  56888999999999999987    5788887753

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=7.6e-48  Score=357.01  Aligned_cols=316  Identities=17%  Similarity=0.172  Sum_probs=255.2

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCC-------CC-----c--
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTND-------GL-----Y--   76 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~-------~~-----~--   76 (356)
                      .+||++...       .++..+++++.+.    |+|+++||||||.+++||++|++++.|.+.       +.     +  
T Consensus         6 ~~mka~v~~-------~~~~~l~~~~~~~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~   74 (379)
T 3iup_A            6 LQLRSRIKS-------SGELELSLDSIDT----PHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTA   74 (379)
T ss_dssp             EEEEEEECT-------TSEEEEEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEE
T ss_pred             hhHHHHHhc-------CCCCceEEEeccC----CCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccc
Confidence            456666554       2346789998866    789999999999999999999999987421       00     0  


Q ss_pred             ------------cCCCccCceeeeeEEEEEeccCC-CCCCCCCEEEe-ccCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           77 ------------FPQFNLNQVILAFGIARVIRSKD-SKYSDGDIVLR-AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        77 ------------~~~~~~g~~~~~~G~v~~vg~~v-~~~~~Gd~V~~-~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                                  ..++|...|+|++|+|+++|++| ++|++||||+. ..|+|+||++++++.++++   |+++++++ |
T Consensus        75 ~~p~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-a  150 (379)
T 3iup_A           75 RVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIGGAMYSQYRCIPADQCLVL---PEGATPAD-G  150 (379)
T ss_dssp             ECCHHHHHHHGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECCSCCSBSEEEEEGGGEEEC---CTTCCHHH-H
T ss_pred             cCccccccccccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecCCCcceeEEEeCHHHeEEC---CCCCCHHH-H
Confidence                        11234444459999999999999 88999999992 2499999999999988665   99999999 8


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEc-CCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSA-AAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g-~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      |++++.++|||+++.. +. ++|++|||+| |+|++|++++|+||.+|++|+++++++++.++++ ++|+++++|+++ .
T Consensus       151 a~l~~~~~ta~~~~~~-~~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~-~  226 (379)
T 3iup_A          151 ASSFVNPLTALGMVET-MR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLK-AQGAVHVCNAAS-P  226 (379)
T ss_dssp             TTSSHHHHHHHHHHHH-HH-HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHH-HTTCSCEEETTS-T
T ss_pred             HhhhhhHHHHHHHHHH-hc-cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCCcEEEeCCC-h
Confidence            9999999999988864 44 8999999996 7899999999999999999999999999999999 899999999987 7


Q ss_pred             hHHHHHHHHCCC-CceEEEECCchh-hHHHHHHhcc-----cC-----------CEEEEEecccccccccccccchhhhh
Q 042784          222 SFDAALTKYFPN-GIDVYLDNVGGK-MLEAVLNHVN-----VH-----------ARIILCGMISQYNKVWTERDGVRNLL  283 (356)
Q Consensus       222 ~~~~~i~~~~~~-~~d~vld~~g~~-~~~~~~~~l~-----~~-----------G~~v~~g~~~~~~~~~~~~~~~~~~~  283 (356)
                      ++.+.+++++++ ++|+||||+|++ .+..++++++     ++           |+++.+|....         ......
T Consensus       227 ~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~---------~~~~~~  297 (379)
T 3iup_A          227 TFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDT---------SPTEFN  297 (379)
T ss_dssp             THHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEE---------EEEEEC
T ss_pred             HHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCC---------Cccccc
Confidence            899999998854 899999999985 6677788775     55           45554444322         112233


Q ss_pred             hhhccceEEEEEeccccc-----chHHHHHHHHHHHHHcCCeeeeeeEEeChhhH--HHHHHHHHcCCCcceEEEEecC
Q 042784          284 NMIGKEVKMEGFMIGSHM-----DRFADFTVEMESYIKEGKIRSKHVIYYGVESF--LESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~--~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      .++.+++++.++...++.     +...+.++++++++.+ .+++.++++|+|+++  ++||+.+.+++..||+|+++++
T Consensus       298 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~  375 (379)
T 3iup_A          298 RNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIAVYNKRATGEKYLINPNK  375 (379)
T ss_dssp             CCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred             cccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence            456788999998776542     2334566778888888 599999999999999  9999999999999999999864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=5.4e-47  Score=353.80  Aligned_cols=313  Identities=18%  Similarity=0.157  Sum_probs=254.0

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CC-----CcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCce
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PD-----HHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQV   85 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~-----~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~   85 (356)
                      +||++++...        +.+++++++.    |+| ++     +||||||.+++||++|++++.|...  ...|..+|  
T Consensus         2 ~MkA~~~~~~--------~~l~~~~~p~----P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~--~~~p~v~G--   65 (398)
T 2dph_A            2 GNKSVVYHGT--------RDLRVETVPY----PKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI--VPKGHVLG--   65 (398)
T ss_dssp             CEEEEEEEET--------TEEEEEEECC----CCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC--CCTTCBCC--
T ss_pred             ccEEEEEEcC--------CCEEEEEccC----CCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC--CCCCcccC--
Confidence            4789888753        5788888765    555 56     9999999999999999999987421  12344454  


Q ss_pred             eeeeEEEEEeccCCCCCCCCCEEEe----------------------------------------ccCCeeeEEeecCC-
Q 042784           86 ILAFGIARVIRSKDSKYSDGDIVLR----------------------------------------AFLPVAEYSLLPCD-  124 (356)
Q Consensus        86 ~~~~G~v~~vg~~v~~~~~Gd~V~~----------------------------------------~~g~~a~~~~v~~~-  124 (356)
                      +|++|+|+++|+++++|++||||++                                        ..|+|+||++++++ 
T Consensus        66 hE~~G~V~~vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~  145 (398)
T 2dph_A           66 HEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYAD  145 (398)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHH
T ss_pred             CceEEEEEEECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEecccc
Confidence            5999999999999999999999983                                        13899999999986 


Q ss_pred             -cccccCCCCCCCCccc---cccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          125 -LLTRKLDPASGIPFPD---YLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       125 -~~~~~i~~P~~~s~~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                       .++++   |+++++++   .||++++++.|||+++ +.+++++|++|||+|+ |++|++++|+||.+|+ +|+++++++
T Consensus       146 ~~~~~i---P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~  220 (398)
T 2dph_A          146 YMLLKF---GDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNP  220 (398)
T ss_dssp             HHCEEC---SSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CeEEEC---CCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence             56444   99999876   2588999999999999 5789999999999996 9999999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCceeecCChhhH-HHHHHHHCCC-CceEEEECCchh---------------hHHHHHHhcccCCEEEE
Q 042784          200 DNVKLLKEEFGYDDAFNYNSEMSF-DAALTKYFPN-GIDVYLDNVGGK---------------MLEAVLNHVNVHARIIL  262 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~~~-~~~i~~~~~~-~~d~vld~~g~~---------------~~~~~~~~l~~~G~~v~  262 (356)
                      +++++++ ++|++ ++|+.+ .++ .+.+++++++ ++|+||||+|..               .++.++++++++|+++.
T Consensus       221 ~~~~~a~-~lGa~-~i~~~~-~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~  297 (398)
T 2dph_A          221 ERLKLLS-DAGFE-TIDLRN-SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI  297 (398)
T ss_dssp             HHHHHHH-TTTCE-EEETTS-SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred             HHHHHHH-HcCCc-EEcCCC-cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence            9999999 99995 899876 554 8888888755 899999999975               58999999999999999


Q ss_pred             Eecccccccccc-----cccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee--e--eeeEEeChhhH
Q 042784          263 CGMISQYNKVWT-----ERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR--S--KHVIYYGVESF  333 (356)
Q Consensus       263 ~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~--~--~~~~~~~~~~~  333 (356)
                      +|..........     ......+...++.|++++.+.....     .+.++++++++.+|+++  +  .++++|+|+++
T Consensus       298 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~  372 (398)
T 2dph_A          298 PGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPV-----TNYNRHLTEAILWDQMPYLSKVMNIEVITLDQA  372 (398)
T ss_dssp             CSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCCG-----GGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTH
T ss_pred             eccccccccccccccccCCcccccHHHHhhcCCEEEEeccCc-----HHHHHHHHHHHHcCCCCccchhhEEEEEcHHHH
Confidence            987621100000     0111224445678889888754322     24578899999999998  6  67889999999


Q ss_pred             HHHHHHHHcCCCcceEEEEec
Q 042784          334 LESLGSLFSSSNIGKVVIQVK  354 (356)
Q Consensus       334 ~~a~~~~~~~~~~gkvvi~~~  354 (356)
                      ++||+.+.+++. ||+|++++
T Consensus       373 ~~A~~~~~~~~~-gKvvv~~~  392 (398)
T 2dph_A          373 PDGYAKFDKGSP-AKFVIDPH  392 (398)
T ss_dssp             HHHHHHHHTTCS-CEEEECTT
T ss_pred             HHHHHHHhcCCc-eEEEEecC
Confidence            999999998887 99999875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.1e-46  Score=348.93  Aligned_cols=315  Identities=15%  Similarity=0.109  Sum_probs=253.4

Q ss_pred             eeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCC-CCc------EEEEEEEEEeChhhhhhhcCCCCCCccCCCccCc
Q 042784           12 ESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIP-DHH------VAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQ   84 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~-~~e------VlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~   84 (356)
                      +||++++...        +.+++++++.    |+|. ++|      |||||.+++||++|++++.|...  ...|.++| 
T Consensus         2 ~Mka~~~~~~--------~~l~~~~~p~----P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~p~v~G-   66 (398)
T 1kol_A            2 GNRGVVYLGS--------GKVEVQKIDY----PKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT--AQVGLVLG-   66 (398)
T ss_dssp             CEEEEEEEET--------TEEEEEEECC----CCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC--CCTTCBCC-
T ss_pred             ccEEEEEecC--------CceEEEEecC----CCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC--CCCCcccC-
Confidence            5889988743        4688888765    6665 777      99999999999999999987431  12344455 


Q ss_pred             eeeeeEEEEEeccCCCCCCCCCEEEe--------------------------------c-------cCCeeeEEeecCC-
Q 042784           85 VILAFGIARVIRSKDSKYSDGDIVLR--------------------------------A-------FLPVAEYSLLPCD-  124 (356)
Q Consensus        85 ~~~~~G~v~~vg~~v~~~~~Gd~V~~--------------------------------~-------~g~~a~~~~v~~~-  124 (356)
                       +|++|+|+++|+++++|++||||++                                +       .|+|+||++++++ 
T Consensus        67 -hE~~G~V~~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~  145 (398)
T 1kol_A           67 -HEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYAD  145 (398)
T ss_dssp             -CCEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHH
T ss_pred             -cccEEEEEEECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchh
Confidence             5999999999999999999999983                                1       3889999999986 


Q ss_pred             -cccccCCCCCCCCcccc---ccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          125 -LLTRKLDPASGIPFPDY---LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       125 -~~~~~i~~P~~~s~~~~---aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                       .++++   |++++++++   +|++++++.|||+++. .+++++|++|||+|+ |++|++++|+||.+|+ +|++++.++
T Consensus       146 ~~~~~~---P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~  220 (398)
T 1kol_A          146 FNLLKL---PDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNP  220 (398)
T ss_dssp             HHCEEC---SCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CeEEEC---CCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCH
Confidence             56444   999988762   4789999999999996 789999999999996 9999999999999999 899999999


Q ss_pred             HHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchh----------------hHHHHHHhcccCCEEEE
Q 042784          200 DNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGK----------------MLEAVLNHVNVHARIIL  262 (356)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~----------------~~~~~~~~l~~~G~~v~  262 (356)
                      +++++++ ++|++ ++++++..++.+.++++++ .++|+||||+|.+                .++.++++++++|+++.
T Consensus       221 ~~~~~a~-~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~  298 (398)
T 1kol_A          221 ARLAHAK-AQGFE-IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI  298 (398)
T ss_dssp             HHHHHHH-HTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHH-HcCCc-EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence            9999998 99997 8898763348888988875 4899999999975                68999999999999999


Q ss_pred             Eecccccccccc-----cccchhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCCee---eeeeEEeChhhHH
Q 042784          263 CGMISQYNKVWT-----ERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR---SKHVIYYGVESFL  334 (356)
Q Consensus       263 ~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~---~~~~~~~~~~~~~  334 (356)
                      +|..........     ......+...++.+++++.+...     ...+.++++++++.+|+++   +.++++|+|++++
T Consensus       299 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~  373 (398)
T 1kol_A          299 PGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT-----PVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAP  373 (398)
T ss_dssp             CSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSC-----CHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHH
T ss_pred             eccccCCcccccccccccccccccHHHHhhcccEEEeccc-----ChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHH
Confidence            987521110000     00112234456778888876432     1345678899999999998   5678899999999


Q ss_pred             HHHHHHHcCCCcceEEEEecC
Q 042784          335 ESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       335 ~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +||+.+.+++. ||+|++++.
T Consensus       374 ~A~~~~~~~~~-gKvvi~~~~  393 (398)
T 1kol_A          374 RGYGEFDAGVP-KKFVIDPHK  393 (398)
T ss_dssp             HHHHHHHHTCS-CEEEECTTC
T ss_pred             HHHHHHhCCCc-eEEEEEeCC
Confidence            99999998887 999998753

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=4e-47  Score=349.82  Aligned_cols=299  Identities=13%  Similarity=0.104  Sum_probs=249.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccC---CCccCceeeee
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFP---QFNLNQVILAF   89 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~---~~~~g~~~~~~   89 (356)
                      ||++++..++       +.+++++.+.    |+|+++||||||.+++||++|++++.|.... ...   |..+||  |++
T Consensus         1 MkA~~~~~~~-------~~l~~~~~p~----P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~~p~v~G~--E~~   66 (357)
T 2b5w_A            1 MKAIAVKRGE-------DRPVVIEKPR----PEPESGEALVRTLRVGVCGTDHEVIAGGHGG-FPEGEDHLVLGH--EAV   66 (357)
T ss_dssp             CEEEEEETTC-------SSCEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHHSCSTT-SCTTCSEEECCS--EEE
T ss_pred             CeEEEEeCCC-------CceEEEECCC----CCCCcCEEEEEEeEEeechhcHHHHcCCCCC-CCCCCCCcccCc--eeE
Confidence            6788888653       2488888755    7889999999999999999999999874321 122   444554  999


Q ss_pred             EEEEEeccCCCCCCCCCEEEe------------------------------c----cCCeeeEEeecCCcccccCCCCCC
Q 042784           90 GIARVIRSKDSKYSDGDIVLR------------------------------A----FLPVAEYSLLPCDLLTRKLDPASG  135 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~------------------------------~----~g~~a~~~~v~~~~~~~~i~~P~~  135 (356)
                      | |+++|++ ++|++||||++                              +    .|+|+||++++++.++++   |++
T Consensus        67 G-V~~vG~~-~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~i---P~~  141 (357)
T 2b5w_A           67 G-VVVDPND-TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRI---PRS  141 (357)
T ss_dssp             E-EEEECTT-SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEEC---CGG
T ss_pred             E-EEEECCC-CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEEC---CCC
Confidence            9 9999999 99999999984                              1    389999999999988655   999


Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCC------CEEEEEcCCChHHHHH-HHHH-HHCCCE-EEEEeCChH---HHH
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSG------SNVFVSAAAGGVGMFA-GQLA-KLKGCK-VVGSTGSDD---NVK  203 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g------~~VlV~g~~g~vG~~~-i~la-~~~G~~-V~~~~~s~~---~~~  203 (356)
                      +| +.  |+++.++.|||+++ +.+++++|      ++|||+|+ |++|+++ +|+| |.+|++ |++++++++   +++
T Consensus       142 ~~-~~--aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~  216 (357)
T 2b5w_A          142 QA-EL--GFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTID  216 (357)
T ss_dssp             GS-TT--GGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHH
T ss_pred             cc-hh--hhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHH
Confidence            99 54  67889999999999 46788999      99999999 9999999 9999 999996 999999888   999


Q ss_pred             HHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhh
Q 042784          204 LLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNL  282 (356)
Q Consensus       204 ~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  282 (356)
                      +++ ++|++++ |+++ .++.+ ++++ ++++|+||||+|.. .++.++++++++|+++.+|.....    .   ...+.
T Consensus       217 ~~~-~lGa~~v-~~~~-~~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~----~---~~~~~  284 (357)
T 2b5w_A          217 IIE-ELDATYV-DSRQ-TPVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDW----A---FEVDA  284 (357)
T ss_dssp             HHH-HTTCEEE-ETTT-SCGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCC----C---CCCCH
T ss_pred             HHH-HcCCccc-CCCc-cCHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCC----C---ceecH
Confidence            998 9999988 9876 56777 7777 55899999999986 889999999999999999976521    0   11233


Q ss_pred             hhh----hccceEEEEEecccccchHHHHHHHHHHHHHcC--C-eeeeeeEEeChhhHHHHHHHHHcCCCcceEEEEecC
Q 042784          283 LNM----IGKEVKMEGFMIGSHMDRFADFTVEMESYIKEG--K-IRSKHVIYYGVESFLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       283 ~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g--~-i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      ..+    +.+++++.++...+     .+.++++++++.+|  + +++.++++|+|+++++||+.+   +..||+|+++++
T Consensus       285 ~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~---~~~gKvvi~~~~  356 (357)
T 2b5w_A          285 GAFHREMVLHNKALVGSVNSH-----VEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD---DTTIKTAIEFST  356 (357)
T ss_dssp             HHHHHHHHHTTCEEEECCCCC-----HHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS---TTCCEEEEECCC
T ss_pred             HHHhHHHHhCCeEEEEeccCC-----HHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh---CCCceEEEEecC
Confidence            344    78899998876543     46789999999999  8 688899999999999999988   347899999865

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=6e-47  Score=378.94  Aligned_cols=305  Identities=19%  Similarity=0.226  Sum_probs=261.2

Q ss_pred             CCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCC
Q 042784           26 VPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDG  105 (356)
Q Consensus        26 ~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~G  105 (356)
                      ++.++.+++++.+.  |.|+|+++||+|||.++|||++|+++..|.+    ..+.++|+  |++|+|+++|++|++|++|
T Consensus       218 ~G~~~~L~~~~~~~--p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~----~~~~~lG~--E~aG~V~~vG~~V~~~~vG  289 (795)
T 3slk_A          218 PGSLDGLALVDEPT--ATAPLGDGEVRIAMRAAGVNFRDALIALGMY----PGVASLGS--EGAGVVVETGPGVTGLAPG  289 (795)
T ss_dssp             TTSSTTEEECCCHH--HHSCCCSSEEEEEEEEEEECHHHHHHTTTCC----SSCCCSCC--CEEEEEEEECSSCCSSCTT
T ss_pred             CCCccceEEEeCCc--cCCCCCCCEEEEEEEEEccCHHHHHHHcCCC----CCCccccc--eeEEEEEEeCCCCCcCCCC
Confidence            56778999988866  4478999999999999999999999988743    23344554  9999999999999999999


Q ss_pred             CEEEe-ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHH
Q 042784          106 DIVLR-AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQL  184 (356)
Q Consensus       106 d~V~~-~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~l  184 (356)
                      |||+. ..|+|+||++++++.++++   |+++|+++ ||+++++++|||+++.+.+++++|++|||+|++|++|++++|+
T Consensus       290 DrV~~~~~G~~ae~~~v~~~~~~~i---P~~ls~~~-AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiql  365 (795)
T 3slk_A          290 DRVMGMIPKAFGPLAVADHRMVTRI---PAGWSFAR-AASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQL  365 (795)
T ss_dssp             CEEEECCSSCSSSEEEEETTSEEEC---CTTCCHHH-HHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHH
T ss_pred             CEEEEEecCCCcCEEEeehHHEEEC---CCCCCHHH-HHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHH
Confidence            99992 3599999999999998665   99999999 8999999999999998889999999999999999999999999


Q ss_pred             HHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCCEEEEE
Q 042784          185 AKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       185 a~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~  263 (356)
                      ||..|++|++++.++ +.+.++  +|+++++++++ .++.+.+++.++ +|+|+||||+|++.++.++++++++|+++.+
T Consensus       366 Ak~~Ga~V~~t~~~~-k~~~l~--lga~~v~~~~~-~~~~~~i~~~t~g~GvDvVld~~gg~~~~~~l~~l~~~Gr~v~i  441 (795)
T 3slk_A          366 ARHLGAEVYATASED-KWQAVE--LSREHLASSRT-CDFEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFLEL  441 (795)
T ss_dssp             HHHTTCCEEEECCGG-GGGGSC--SCGGGEECSSS-STHHHHHHHHSCSSCCSEEEECCCTTTTHHHHTSCTTCEEEEEC
T ss_pred             HHHcCCEEEEEeChH-Hhhhhh--cChhheeecCC-hhHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHhcCCCEEEEe
Confidence            999999999998544 666554  89999999987 789999999985 4999999999999999999999999999999


Q ss_pred             ecccccccccccccchhhhhhhhccceEEEEEecccc-cchHHHHHHHHHHHHHcCCeeeeeeEEeChhhHHHHHHHHHc
Q 042784          264 GMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKEGKIRSKHVIYYGVESFLESLGSLFS  342 (356)
Q Consensus       264 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~a~~~~~~  342 (356)
                      |......         ........+++++..+++... .....+.++++++++++|++++.++++|+++++++||+.+++
T Consensus       442 G~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p~~~~~~~l~~~~eA~~~l~~  512 (795)
T 3slk_A          442 GKTDVRD---------PVEVADAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQ  512 (795)
T ss_dssp             CSTTCCC---------HHHHHHHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEGGGHHHHHHHHHH
T ss_pred             ccccccC---------cccccccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCcCCCcceeEcHHHHHHHHHHHhc
Confidence            8754311         111222347888887766432 234457899999999999999999999999999999999999


Q ss_pred             CCCcceEEEEecC
Q 042784          343 SSNIGKVVIQVKA  355 (356)
Q Consensus       343 ~~~~gkvvi~~~~  355 (356)
                      ++..||+|+++++
T Consensus       513 g~~~GKvVl~~~~  525 (795)
T 3slk_A          513 ARHVGKLVLTMPP  525 (795)
T ss_dssp             TCCCBEEEEECCC
T ss_pred             CCccceEEEecCc
Confidence            9999999999864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=7.7e-46  Score=333.68  Aligned_cols=296  Identities=18%  Similarity=0.233  Sum_probs=239.3

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||++++..++     .+  ..+++.+.    |+|+++||+|||.+++||++|++.+.|.+...  .++|...|+|++|+|
T Consensus         1 Mka~~~~~~g-----~~--~~l~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~~p~i~G~e~~G~V   67 (302)
T 1iz0_A            1 MKAWVLKRLG-----GP--LELVDLPE----PEAEEGEVVLRVEAVGLNFADHLMRLGAYLTR--LHPPFIPGMEVVGVV   67 (302)
T ss_dssp             CEEEEECSTT-----SC--EEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHHTCSSSC--CCSSBCCCCEEEEEE
T ss_pred             CeEEEEcCCC-----Cc--hheEECCC----CCCCCCEEEEEEEEEecCHHHHHHhCCCCCCC--CCCCCcccceEEEEE
Confidence            5788887643     22  23445543    78899999999999999999999998754322  233444445899998


Q ss_pred             EEeccCCCCCCCCCEEEecc---CCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEE
Q 042784           93 RVIRSKDSKYSDGDIVLRAF---LPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVF  169 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~~---g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  169 (356)
                      +           ||||+ +.   |+|+||++++++.++++   |+++|+++ ||+++++++|||+++.+.+ +++|++||
T Consensus        68 ~-----------GdrV~-~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~l~~~~~ta~~~l~~~~-~~~g~~vl  130 (302)
T 1iz0_A           68 E-----------GRRYA-ALVPQGGLAERVAVPKGALLPL---PEGLSPEE-AAAFPVSFLTAYLALKRAQ-ARPGEKVL  130 (302)
T ss_dssp             T-----------TEEEE-EECSSCCSBSEEEEEGGGCEEC---CTTCCHHH-HHTSHHHHHHHHHHHHHTT-CCTTCEEE
T ss_pred             E-----------CcEEE-EecCCcceeeEEEEcHHHcEeC---CCCCCHHH-HHHhhhHHHHHHHHHHHhc-CCCCCEEE
Confidence            7           99999 43   99999999999988655   99999999 7899999999999998777 99999999


Q ss_pred             EEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHH
Q 042784          170 VSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEA  249 (356)
Q Consensus       170 V~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~  249 (356)
                      |+|++|++|++++|+|+..|++|+++++++++.+.++ ++|++.++|+++..++.+.+     +++|++|| +|.+.++.
T Consensus       131 V~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~~~~~~~~~~~~~~-----~~~d~vid-~g~~~~~~  203 (302)
T 1iz0_A          131 VQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAATYAEVPERAKAW-----GGLDLVLE-VRGKEVEE  203 (302)
T ss_dssp             ESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEEEEGGGHHHHHHHT-----TSEEEEEE-CSCTTHHH
T ss_pred             EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCEEEECCcchhHHHHh-----cCceEEEE-CCHHHHHH
Confidence            9999999999999999999999999999999999998 89999999886312344433     57999999 99999999


Q ss_pred             HHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccccchHHHHHHHHHH---HHHcCCeeeeeeE
Q 042784          250 VLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMES---YIKEGKIRSKHVI  326 (356)
Q Consensus       250 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~g~i~~~~~~  326 (356)
                      ++++++++|+++.+|......       ...+...++.+++++.++....+ ....+.++++++   ++.+|++++.+++
T Consensus       204 ~~~~l~~~G~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~g~l~~~i~~  275 (302)
T 1iz0_A          204 SLGLLAHGGRLVYIGAAEGEV-------APIPPLRLMRRNLAVLGFWLTPL-LREGALVEEALGFLLPRLGRELRPVVGP  275 (302)
T ss_dssp             HHTTEEEEEEEEEC--------------CCCCTTHHHHTTCEEEECCHHHH-TTCHHHHHHHHHHHGGGBTTTBCCCEEE
T ss_pred             HHHhhccCCEEEEEeCCCCCC-------CCcCHHHHHhCCCeEEEEeccch-hhhHHHHHHHHhhhHHHHcCCcccccce
Confidence            999999999999998765411       11234456788999998876433 223567888899   9999999999999


Q ss_pred             EeChhhHHHHHHHHHcCCCcceEEEEe
Q 042784          327 YYGVESFLESLGSLFSSSNIGKVVIQV  353 (356)
Q Consensus       327 ~~~~~~~~~a~~~~~~~~~~gkvvi~~  353 (356)
                      +|+++++++||+.+.+++..||+|+++
T Consensus       276 ~~~l~~~~~A~~~~~~~~~~gKvvv~~  302 (302)
T 1iz0_A          276 VFPFAEAEAAFRALLDRGHTGKVVVRL  302 (302)
T ss_dssp             EEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred             EEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            999999999999999888889999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=2.3e-44  Score=332.49  Aligned_cols=300  Identities=16%  Similarity=0.117  Sum_probs=243.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCC-CcEEEEEEEEEeChhhhhhhcC--CCCCCccC---CCccCcee
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPD-HHVAVETLWISIDPYLRATMTG--TNDGLYFP---QFNLNQVI   86 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~-~eVlVkv~~~~i~~~d~~~~~g--~~~~~~~~---~~~~g~~~   86 (356)
                      ||++++..++       +++++++.+.    |+|++ +||||||.+++||++|++.+.|  .+.. ...   |..+|+  
T Consensus         1 MkA~~~~~~g-------~~l~~~~~~~----P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~~~~~p~v~G~--   66 (366)
T 2cdc_A            1 MKAIIVKPPN-------AGVQVKDVDE----KKLDSYGKIKIRTIYNGICGADREIVNGKLTLST-LPKGKDFLVLGH--   66 (366)
T ss_dssp             CEEEEECTTS-------CCCEEEECCG----GGSCCCSSEEEEEEEEEECHHHHHHHTTCC--------CCSCEECCS--
T ss_pred             CeEEEEeCCC-------CceEEEECcC----CCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCC-CCcCCCCCcCCc--
Confidence            6788887653       1388888765    67889 9999999999999999999987  3321 122   445554  


Q ss_pred             eeeEEEEEeccCCCCCCCCCEEEe--------------------------------ccCCeeeEEeecCCcccccCCCCC
Q 042784           87 LAFGIARVIRSKDSKYSDGDIVLR--------------------------------AFLPVAEYSLLPCDLLTRKLDPAS  134 (356)
Q Consensus        87 ~~~G~v~~vg~~v~~~~~Gd~V~~--------------------------------~~g~~a~~~~v~~~~~~~~i~~P~  134 (356)
                      |++|+|++  ++ ++|++||||++                                ..|+|+||++++++.++++   |+
T Consensus        67 E~~G~V~~--~~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~i---P~  140 (366)
T 2cdc_A           67 EAIGVVEE--SY-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKI---PK  140 (366)
T ss_dssp             EEEEEECS--CC-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEE---CG
T ss_pred             ceEEEEEe--CC-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEEC---cC
Confidence            99999999  67 88999999994                                2489999999999988665   99


Q ss_pred             CCCccccccccCchhhhHHHHHH--H--hCCCC--C-------CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh--
Q 042784          135 GIPFPDYLSSLGIPGFAAWVGIE--V--LGQPK--S-------GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD--  199 (356)
Q Consensus       135 ~~s~~~~aa~l~~~~~ta~~~l~--~--~~~~~--~-------g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~--  199 (356)
                      ++| ++  |+++.++.|||+++.  +  .++++  +       |++|||+|+ |++|++++|+|+..|++|+++++++  
T Consensus       141 ~l~-~~--Aal~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~  216 (366)
T 2cdc_A          141 SIE-DI--GILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPT  216 (366)
T ss_dssp             GGT-TT--GGGHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCC
T ss_pred             Ccc-hh--hhhcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccc
Confidence            999 77  468889999999997  4  67888  8       999999999 9999999999999999999999988  


Q ss_pred             -HHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh-hH-HHHHHhcccCCEEEEEecccccccccccc
Q 042784          200 -DNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-ML-EAVLNHVNVHARIILCGMISQYNKVWTER  276 (356)
Q Consensus       200 -~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  276 (356)
                       ++.++++ ++|++.+ | .+  ++.+.+.+ +++++|++|||+|.. .+ +.++++++++|+++.+|......      
T Consensus       217 ~~~~~~~~-~~ga~~v-~-~~--~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~------  284 (366)
T 2cdc_A          217 EVEQTVIE-ETKTNYY-N-SS--NGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGS------  284 (366)
T ss_dssp             HHHHHHHH-HHTCEEE-E-CT--TCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCE------
T ss_pred             hHHHHHHH-HhCCcee-c-hH--HHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCc------
Confidence             8999998 8999877 7 53  56666666 446899999999985 77 89999999999999998765310      


Q ss_pred             cchhhhhh---hhccceEEEEEecccccchHHHHHHHHHHHHHcCC------eeeeeeEEeChhhHHHHHHHH-HcCCCc
Q 042784          277 DGVRNLLN---MIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGK------IRSKHVIYYGVESFLESLGSL-FSSSNI  346 (356)
Q Consensus       277 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~------i~~~~~~~~~~~~~~~a~~~~-~~~~~~  346 (356)
                       ...+...   ++.+++++.++...+     .+.++++++++.+|+      +++.++++|+|+++++||+.+ .+++..
T Consensus       285 -~~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~  358 (366)
T 2cdc_A          285 -VPLDYKTLQEIVHTNKTIIGLVNGQ-----KPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGE  358 (366)
T ss_dssp             -EEEEHHHHHHHHHTTCEEEECCCCC-----HHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTC
T ss_pred             -cccChhhhHHHHhcCcEEEEecCCC-----HHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCc
Confidence             1123334   778999998875432     467899999999999      668888999999999999994 346678


Q ss_pred             ceEEEEec
Q 042784          347 GKVVIQVK  354 (356)
Q Consensus       347 gkvvi~~~  354 (356)
                      ||+|++++
T Consensus       359 gKvvi~~~  366 (366)
T 2cdc_A          359 IKIRILWE  366 (366)
T ss_dssp             CEEEEECC
T ss_pred             eEEEEecC
Confidence            99999874

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=100.00  E-value=8.9e-35  Score=318.69  Aligned_cols=306  Identities=19%  Similarity=0.231  Sum_probs=245.5

Q ss_pred             CCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccC----CCccCceeeeeEEEEEeccCCCCC
Q 042784           27 PTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFP----QFNLNQVILAFGIARVIRSKDSKY  102 (356)
Q Consensus        27 ~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~----~~~~g~~~~~~G~v~~vg~~v~~~  102 (356)
                      +..+.+.+.+.+... .+.+.++||+|||.++|+|+.|+++..|.......+    ..+...|+|++|+|          
T Consensus      1539 g~l~sl~~~~~~~~~-~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V---------- 1607 (2512)
T 2vz8_A         1539 GDLSSIRWVCSPLHY-ALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD---------- 1607 (2512)
T ss_dssp             TCTTSEEEEECTTTT-CCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE----------
T ss_pred             CCcCceEEEecCccc-ccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE----------
Confidence            445677887654310 011237999999999999999999998754321111    11223445888876          


Q ss_pred             CCCCEEEe--ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHH
Q 042784          103 SDGDIVLR--AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMF  180 (356)
Q Consensus       103 ~~Gd~V~~--~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~  180 (356)
                      ++||||+.  ..|+|+||++++++.++++   |+++|+++ ||+++++++|||+++.+.+++++|++|||+|++|++|++
T Consensus      1608 ~vGdrV~g~~~~G~~Aeyv~vp~~~v~~i---Pd~ls~~e-AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~a 1683 (2512)
T 2vz8_A         1608 ASGRRVMGMVPAEGLATSVLLLQHATWEV---PSTWTLEE-AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQA 1683 (2512)
T ss_dssp             TTSCCEEEECSSCCSBSEEECCGGGEEEC---CTTSCHHH-HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHH
T ss_pred             ccCCEEEEeecCCceeeEEEcccceEEEe---CCCCCHHH-HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHH
Confidence            37999982  1389999999999988665   99999999 899999999999999888999999999999999999999


Q ss_pred             HHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhccc
Q 042784          181 AGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNV  256 (356)
Q Consensus       181 ~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~  256 (356)
                      ++|+||..|++|++++.++++.+++++.   +|+++++++++ .++.+.+++.++ +|+|+||||++++.+..+++++++
T Consensus      1684 AiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~-~~~~~~i~~~t~g~GvDvVld~~g~~~l~~~l~~L~~ 1762 (2512)
T 2vz8_A         1684 AIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRD-TSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQ 1762 (2512)
T ss_dssp             HHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSS-SHHHHHHHHTTTSCCEEEEEECCCHHHHHHHHTTEEE
T ss_pred             HHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCC-HHHHHHHHHhcCCCCceEEEECCCchHHHHHHHhcCC
Confidence            9999999999999999999999999853   68899999987 788899998885 489999999998899999999999


Q ss_pred             CCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccccc----chHHHHHHHHHHHHHcCCeeeeeeEEeChhh
Q 042784          257 HARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM----DRFADFTVEMESYIKEGKIRSKHVIYYGVES  332 (356)
Q Consensus       257 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~  332 (356)
                      +|+++.+|......       .......++.+++++.++.+....    ..+.+.++.+.+++.+|.+++.++++|++++
T Consensus      1763 ~Gr~V~iG~~~~~~-------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~e 1835 (2512)
T 2vz8_A         1763 HGRFLEIGKFDLSN-------NHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTK 1835 (2512)
T ss_dssp             EEEEEECCCHHHHT-------TCEEEGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCSCCCCEEEEESST
T ss_pred             CcEEEEeecccccc-------cCcccccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCcCCCcceEecHHH
Confidence            99999998643211       111223456789999988765432    2345566666677778999999999999999


Q ss_pred             HHHHHHHHHcCCCcceEEEEecC
Q 042784          333 FLESLGSLFSSSNIGKVVIQVKA  355 (356)
Q Consensus       333 ~~~a~~~~~~~~~~gkvvi~~~~  355 (356)
                      +++|++.+.+++..||+|+++++
T Consensus      1836 i~eA~~~l~~g~~~GKvVi~~~~ 1858 (2512)
T 2vz8_A         1836 VEAAFRYMAQGKHIGKVVIQVRE 1858 (2512)
T ss_dssp             HHHHHHHHHTTCCSSEEEEECSC
T ss_pred             HHHHHHhhhccCccceEEEECCC
Confidence            99999999999999999999864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.91  E-value=8.6e-24  Score=177.98  Aligned_cols=184  Identities=21%  Similarity=0.374  Sum_probs=144.4

Q ss_pred             CCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Q 042784          133 ASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       133 P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      |+++|+++ ||++++++.|||+++.+.+++++|++|+|+|++|++|++++++++..|++|+++++++++.+.++ ++|++
T Consensus         8 P~~~~~~~-aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~g~~   85 (198)
T 1pqw_A            8 PDTLADNE-AATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-RLGVE   85 (198)
T ss_dssp             ------CH-HHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-TTCCS
T ss_pred             CCCCCHHH-HHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCC
Confidence            99999999 78899999999999987789999999999999999999999999999999999999999988888 89998


Q ss_pred             ceeecCChhhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceE
Q 042784          213 DAFNYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVK  291 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (356)
                      .++|+.+ .++.+.+.+.++ +++|++|||+|...+..++++++++|+++.+|......     . ...+. ..+.++++
T Consensus        86 ~~~d~~~-~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-----~-~~~~~-~~~~~~~~  157 (198)
T 1pqw_A           86 YVGDSRS-VDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYA-----D-ASLGL-AALAKSAS  157 (198)
T ss_dssp             EEEETTC-STHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTT-----T-CEEEG-GGGTTTCE
T ss_pred             EEeeCCc-HHHHHHHHHHhCCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcC-----c-CcCCh-hHhcCCcE
Confidence            8888876 567777877764 48999999999889999999999999999998765311     0 00111 23568888


Q ss_pred             EEEEeccc----ccchHHHHHHHHHHHHHcCCeeeeeeE
Q 042784          292 MEGFMIGS----HMDRFADFTVEMESYIKEGKIRSKHVI  326 (356)
Q Consensus       292 ~~~~~~~~----~~~~~~~~l~~~~~~~~~g~i~~~~~~  326 (356)
                      +.++....    ......+.++++++++++|++++.+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~  196 (198)
T 1pqw_A          158 FSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLPVT  196 (198)
T ss_dssp             EEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred             EEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCCCCC
Confidence            88764411    111235778999999999999887643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.94  E-value=6.5e-09  Score=94.88  Aligned_cols=146  Identities=12%  Similarity=0.004  Sum_probs=99.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc--eeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD--AFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~--v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +++|+|+|+ |++|+++++.++.+|++|+++++++++.+.++ ++++..  ++++.. .++.+.+.     ++|+||+|+
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~-~~~~~~~~~~~~~~-~~~~~~~~-----~~DvVI~~~  238 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLE-TLFGSRVELLYSNS-AEIETAVA-----EADLLIGAV  238 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHGGGSEEEECCH-HHHHHHHH-----TCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HhhCceeEeeeCCH-HHHHHHHc-----CCCEEEECC
Confidence            489999998 99999999999999999999999999999998 555543  333332 44555443     599999999


Q ss_pred             chhh-------HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEec-cccc-----chH-HHHH
Q 042784          243 GGKM-------LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMI-GSHM-----DRF-ADFT  308 (356)
Q Consensus       243 g~~~-------~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~-~~~l  308 (356)
                      +.+.       ....++.++++|.++.++...+.......+ ...+...+..+++++.+... ....     ..+ ...+
T Consensus       239 ~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~-~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~  317 (361)
T 1pjc_A          239 LVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHP-TSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTL  317 (361)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCC-CCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHH
T ss_pred             CcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccC-CCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHH
Confidence            7643       567888999999999998765421000001 11222334567777766432 1111     111 3556


Q ss_pred             HHHHHHHHcCC
Q 042784          309 VEMESYIKEGK  319 (356)
Q Consensus       309 ~~~~~~~~~g~  319 (356)
                      ..+++++.+|.
T Consensus       318 ~~l~~l~~~G~  328 (361)
T 1pjc_A          318 PYVVKLANQGL  328 (361)
T ss_dssp             HHHHHHHHHGG
T ss_pred             HHHHHHHhCCc
Confidence            78888888773

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.92  E-value=2.3e-08  Score=91.51  Aligned_cols=149  Identities=15%  Similarity=0.072  Sum_probs=94.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+++|+|+|+ |++|+++++.++..|++|+++++++++.+.+++.+|.....+..+..++.+.+.     ++|+|++|++
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~-----~~DvVi~~~g  238 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQ-----HADLLIGAVL  238 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHH-----HCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHh-----CCCEEEECCC
Confidence            3689999998 999999999999999999999999999888874578764344444345555553     4899999998


Q ss_pred             hhh-------HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccc-cc-c----hH-HHHHH
Q 042784          244 GKM-------LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS-HM-D----RF-ADFTV  309 (356)
Q Consensus       244 ~~~-------~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~-~~~l~  309 (356)
                      ...       ....++.++++|.++.++...+.. ....+....+...+..+++++.+..... .. +    .+ .+.+.
T Consensus       239 ~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~-~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~  317 (369)
T 2eez_A          239 VPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGC-VETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLP  317 (369)
T ss_dssp             -------CCSCHHHHTTSCTTCEEEECC--------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHH
T ss_pred             CCccccchhHHHHHHHhhcCCCEEEEEecCCCCC-CCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHH
Confidence            642       577889999999999998765311 1000011112223445677776643211 10 0    11 34567


Q ss_pred             HHHHHHHcCC
Q 042784          310 EMESYIKEGK  319 (356)
Q Consensus       310 ~~~~~~~~g~  319 (356)
                      .+++++.+|.
T Consensus       318 ~l~~l~~~g~  327 (369)
T 2eez_A          318 YVLKLAEKGL  327 (369)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHhcCh
Confidence            7778887764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.83  E-value=7.6e-11  Score=109.34  Aligned_cols=166  Identities=11%  Similarity=0.050  Sum_probs=120.0

Q ss_pred             eeeeEEEEEeccCCCCCCCCCEEEe-----------ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHH
Q 042784           86 ILAFGIARVIRSKDSKYSDGDIVLR-----------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWV  154 (356)
Q Consensus        86 ~~~~G~v~~vg~~v~~~~~Gd~V~~-----------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~  154 (356)
                      .+..+.+..+|++++.+.+|+++++           ..|++++|+..+...++..   |++++.+.  ++...+..++|.
T Consensus        79 ~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~---~k~v~~~~--~~~~~~~s~a~~  153 (404)
T 1gpj_A           79 SEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINL---GKRAREET--RISEGAVSIGSA  153 (404)
T ss_dssp             HHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---HHHHHHHS--STTCSCCSHHHH
T ss_pred             chHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhh---hccCcchh--hhcCCCccHHHH
Confidence            3556778889999999999999842           1377888888887776555   77777766  344556778888


Q ss_pred             HHHHhC---CCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHH-HHHHHHhCCCceeecCChhhHHHHHHH
Q 042784          155 GIEVLG---QPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNV-KLLKEEFGYDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       155 ~l~~~~---~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~-~~~~~~~g~~~v~~~~~~~~~~~~i~~  229 (356)
                      ++....   .-.+|++|+|+|+ |++|.++++.++..|+ +|++++++.++. ++++ ++|+. ++++   .++.+.+  
T Consensus       154 av~~a~~~~~~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~-~~g~~-~~~~---~~l~~~l--  225 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR-DLGGE-AVRF---DELVDHL--  225 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-HHTCE-ECCG---GGHHHHH--
T ss_pred             HHHHHHHHhccccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HcCCc-eecH---HhHHHHh--
Confidence            774322   1257999999997 9999999999999999 999999999887 5555 88875 4444   3444444  


Q ss_pred             HCCCCceEEEECCchh-hH--HHHHHh--c--ccCCEEEEEeccc
Q 042784          230 YFPNGIDVYLDNVGGK-ML--EAVLNH--V--NVHARIILCGMIS  267 (356)
Q Consensus       230 ~~~~~~d~vld~~g~~-~~--~~~~~~--l--~~~G~~v~~g~~~  267 (356)
                         .++|+|++|++.. .+  ...+..  +  +++|.++.++...
T Consensus       226 ---~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          226 ---ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             ---HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             ---cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence               2589999999864 11  134444  3  5577777777643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.81  E-value=8e-08  Score=88.10  Aligned_cols=98  Identities=20%  Similarity=0.203  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|++|+|+|+ |++|+++++.++.+|++|+++++++++.+.+++.+|+....++....++.+.+.     ++|+|++|++
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~-----~aDvVi~~~~  240 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVK-----RADLVIGAVL  240 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHH-----HCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHc-----CCCEEEECCC
Confidence            5899999998 999999999999999999999999999988884578764444433245555443     4899999997


Q ss_pred             hhh-------HHHHHHhcccCCEEEEEeccc
Q 042784          244 GKM-------LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~~~-------~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.       ....++.++++|.++.++...
T Consensus       241 ~p~~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          241 VPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             CTTSCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             cCCCCCcceecHHHHhcCCCCcEEEEEecCC
Confidence            543       578889999999999998643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.62  E-value=1e-07  Score=87.74  Aligned_cols=125  Identities=18%  Similarity=0.129  Sum_probs=84.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce-eecCC------------h--hh----HH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA-FNYNS------------E--MS----FD  224 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v-~~~~~------------~--~~----~~  224 (356)
                      ++++|+|+|+ |.+|++++++++.+|++|++.++++++.+.++ ++|+..+ ++..+            .  .+    ..
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            6899999997 99999999999999999999999999999888 7998644 22210            0  00    11


Q ss_pred             HHHHHHCCCCceEEEECC---chh---h-HHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEe
Q 042784          225 AALTKYFPNGIDVYLDNV---GGK---M-LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFM  296 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~---g~~---~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (356)
                      +.+.+.. .++|+||+|+   |.+   . ....++.+++++.++.++...+..-    + ...+...+..+++++.+..
T Consensus       249 ~~l~~~~-~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~----~-~~~~~~~~~~~~v~i~g~~  321 (384)
T 1l7d_A          249 EAVLKEL-VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNC----P-LSEPGKIVVKHGVKIVGHT  321 (384)
T ss_dssp             HHHHHHH-TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSS----T-TCCTTCEEEETTEEEECCS
T ss_pred             HHHHHHh-CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCe----e-cccCCcEEEECCEEEEEeC
Confidence            1233322 3599999999   532   2 3678899999999999986543110    0 0011223456778887754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.49  E-value=3.9e-07  Score=85.67  Aligned_cols=106  Identities=19%  Similarity=0.212  Sum_probs=84.0

Q ss_pred             hhhhHHHHHHHhC-CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHH
Q 042784          148 PGFAAWVGIEVLG-QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAA  226 (356)
Q Consensus       148 ~~~ta~~~l~~~~-~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~  226 (356)
                      ...++|+++.+.. ...+|++|+|.|. |.+|..+++.++.+|++|+++++++++.+.++ ++|++ +.+      +.+.
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~-G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~-~~Ga~-~~~------l~e~  326 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGY-GDVGKGCAEAMKGQGARVSVTEIDPINALQAM-MEGFD-VVT------VEEA  326 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-ECC------HHHH
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCE-Eec------HHHH
Confidence            4566777765432 2678999999997 99999999999999999999999999988888 88875 322      2222


Q ss_pred             HHHHCCCCceEEEECCchh-hHH-HHHHhcccCCEEEEEeccc
Q 042784          227 LTKYFPNGIDVYLDNVGGK-MLE-AVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       227 i~~~~~~~~d~vld~~g~~-~~~-~~~~~l~~~G~~v~~g~~~  267 (356)
                      +     .++|+|++|+|.. .+. ..++.++++|+++.+|...
T Consensus       327 l-----~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          327 I-----GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             G-----GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             H-----hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            2     3589999999975 344 7889999999999998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.29  E-value=3.4e-06  Score=77.76  Aligned_cols=124  Identities=15%  Similarity=0.128  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee-ecC-------------ChhhH----HH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF-NYN-------------SEMSF----DA  225 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~-~~~-------------~~~~~----~~  225 (356)
                      ++++|+|+|+ |.+|+.++++|+.+|++|+++++++++.+.++ ++|+..+. +..             + .++    .+
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~-~lGa~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~  247 (401)
T 1x13_A          171 PPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SMGAEFLELDFKEEAGSGDGYAKVMS-DAFIKAEME  247 (401)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH-HTTCEECCC--------CCHHHHHHS-HHHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCEEEEecccccccccccchhhcc-HHHHHHHHH
Confidence            5899999997 99999999999999999999999999988887 88886331 110             0 111    11


Q ss_pred             HHHHHCCCCceEEEECC---chh---h-HHHHHHhcccCCEEEEEecccccccccccccchhhhh-hhhccceEEEEEe
Q 042784          226 ALTKYFPNGIDVYLDNV---GGK---M-LEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLL-NMIGKEVKMEGFM  296 (356)
Q Consensus       226 ~i~~~~~~~~d~vld~~---g~~---~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  296 (356)
                      .+.+.. .++|+||+++   |.+   . ....++.|++++.++.++...+..    .+.. .... .+..+++++.+..
T Consensus       248 ~l~e~~-~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~----v~~~-~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          248 LFAAQA-KEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGN----CEYT-VPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHHH-HHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCS----BTTC-CTTSEEECTTSCEEECCS
T ss_pred             HHHHHh-CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCC----cCcc-cCCCceEEECCEEEEeeC
Confidence            232222 2489999995   321   2 357889999999999998753311    0000 0111 1356778887753

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.29  E-value=7.9e-06  Score=71.11  Aligned_cols=105  Identities=19%  Similarity=0.267  Sum_probs=77.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||++++|.++++.+...|++|+++++++++.+.+.+++|....   .|..+..++.+.+.+..  -+++|++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL  107 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVL  107 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            589999999999999999999999999999999999998887778886422   24444334433333322  1569999


Q ss_pred             EECCch-----------h---------------hHHHHHHhcccCCEEEEEecccc
Q 042784          239 LDNVGG-----------K---------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       239 ld~~g~-----------~---------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +++.|.           +               ..+.++..|+.+|+++.++...+
T Consensus       108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~  163 (273)
T 4fgs_A          108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAG  163 (273)
T ss_dssp             EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGG
T ss_pred             EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhh
Confidence            999873           1               12445566788899998877554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.27  E-value=5.4e-07  Score=70.82  Aligned_cols=108  Identities=14%  Similarity=0.122  Sum_probs=76.4

Q ss_pred             hhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHH
Q 042784          149 GFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALT  228 (356)
Q Consensus       149 ~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~  228 (356)
                      ..+++.++.. .....+++|+|.|+ |.+|.+.++.++..|++|++.++++++.+.+.+++|.. +..+.   ++.+.+.
T Consensus         6 ~sv~~~a~~~-~~~~~~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~-~~~~~---~~~~~~~   79 (144)
T 3oj0_A            6 VSIPSIVYDI-VRKNGGNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYE-YVLIN---DIDSLIK   79 (144)
T ss_dssp             CSHHHHHHHH-HHHHCCCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCE-EEECS---CHHHHHH
T ss_pred             ccHHHHHHHH-HHhccCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCc-eEeec---CHHHHhc
Confidence            3455556543 22334899999997 99999999988889999999999999887766588853 33333   3444443


Q ss_pred             HHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          229 KYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       229 ~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                           ++|+|+.|++..........+++++.++.++.+.
T Consensus        80 -----~~Divi~at~~~~~~~~~~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           80 -----NNDVIITATSSKTPIVEERSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             -----TCSEEEECSCCSSCSBCGGGCCTTCEEEECCSSC
T ss_pred             -----CCCEEEEeCCCCCcEeeHHHcCCCCEEEEccCCc
Confidence                 4899999998752111226788888998887643

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.26  E-value=3.7e-06  Score=72.18  Aligned_cols=105  Identities=13%  Similarity=0.077  Sum_probs=74.1

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHH
Q 042784          154 VGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       154 ~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      ..+ ...++.++++||..|+ | .|..++.+++. +.+|++++.+++..+.+++.   .+....+.... .++.+..  .
T Consensus        82 ~~~-~~~~~~~~~~vldiG~-G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~--~  154 (248)
T 2yvl_A           82 YIA-LKLNLNKEKRVLEFGT-G-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFN-VDFKDAE--V  154 (248)
T ss_dssp             HHH-HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEEC-SCTTTSC--C
T ss_pred             HHH-HhcCCCCCCEEEEeCC-C-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEE-cChhhcc--c
Confidence            344 4567889999999996 6 69999999998 88999999999988888743   24311121111 1221111  0


Q ss_pred             CCCCceEEEECCch--hhHHHHHHhcccCCEEEEEec
Q 042784          231 FPNGIDVYLDNVGG--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       231 ~~~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .++++|+|+...+.  ..+..+.+.|+++|+++....
T Consensus       155 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          155 PEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             CTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             CCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            23479999998775  478899999999999987654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.12  E-value=1.6e-05  Score=68.75  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+..++.+.+.+..  -+++|++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   86 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL   86 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            57899999999999999999999999999999999998888776665431   124444333333333321  1469999


Q ss_pred             EECCchh-----------h---------------HHHHHHhcccCCEEEEEecccc
Q 042784          239 LDNVGGK-----------M---------------LEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       239 ld~~g~~-----------~---------------~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +.+.|..           .               .+.++..++.+|+++.++....
T Consensus        87 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~  142 (255)
T 4eso_A           87 HINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVAD  142 (255)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGG
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhh
Confidence            9988731           1               1233345566789998877554

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.12  E-value=5.1e-06  Score=75.21  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee-e--------cCCh--h----hHHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF-N--------YNSE--M----SFDAALT  228 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~-~--------~~~~--~----~~~~~i~  228 (356)
                      ++.+|+|+|+ |.+|+.++++++.+|++|++.++++++.+.++ ++|+..+. +        |...  +    .-.+.+.
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR-SVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH-HTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            6799999997 99999999999999999999999999999998 78875221 0        1100  0    0111222


Q ss_pred             HHCCCCceEEEECCchh-------hHHHHHHhcccCCEEEEEeccccc
Q 042784          229 KYFPNGIDVYLDNVGGK-------MLEAVLNHVNVHARIILCGMISQY  269 (356)
Q Consensus       229 ~~~~~~~d~vld~~g~~-------~~~~~~~~l~~~G~~v~~g~~~~~  269 (356)
                      +.. .++|+||.++..+       .-...++.+++++.++.++...+.
T Consensus       261 e~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG  307 (381)
T 3p2y_A          261 DAI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGG  307 (381)
T ss_dssp             HHH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTC
T ss_pred             HHH-hcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCC
Confidence            211 4699999986321       246888999999999999876653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.11  E-value=1.1e-05  Score=73.64  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=73.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceee-------------cCC----------h
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFN-------------YNS----------E  220 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~-------------~~~----------~  220 (356)
                      ++.+|+|+|+ |.+|+.++++++.+|++|++.++++++.+.++ ++|+..+..             |..          .
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVA-SLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH-HTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            5789999997 99999999999999999999999999999998 788752110             110          0


Q ss_pred             hhHHHHHHHHCCCCceEEEECCchh-------hHHHHHHhcccCCEEEEEecccc
Q 042784          221 MSFDAALTKYFPNGIDVYLDNVGGK-------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       221 ~~~~~~i~~~~~~~~d~vld~~g~~-------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ..+.+.+     .++|+||.|+..+       .-...++.+++++.++.++...+
T Consensus       267 ~~l~e~l-----~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~G  316 (405)
T 4dio_A          267 ALVAEHI-----AKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERG  316 (405)
T ss_dssp             HHHHHHH-----HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGT
T ss_pred             hHHHHHh-----cCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCC
Confidence            1222222     3589999996321       34678889999999999986544

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.05  E-value=4.3e-05  Score=57.18  Aligned_cols=93  Identities=17%  Similarity=0.181  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .+.+|+|+|+ |.+|..+++.+...| .+|+++++++++.+.+. ..+... ..|..+...    +.+.. .++|+||+|
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~----~~~~~-~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDEAG----LAKAL-GGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCHHH----HHHHT-TTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCHHH----HHHHH-cCCCEEEEC
Confidence            3578999999 999999999999999 69999999999888887 556542 233433222    33322 369999999


Q ss_pred             CchhhHHHHHH-hcccCCEEEEE
Q 042784          242 VGGKMLEAVLN-HVNVHARIILC  263 (356)
Q Consensus       242 ~g~~~~~~~~~-~l~~~G~~v~~  263 (356)
                      ++........+ +.+.+..++.+
T Consensus        77 ~~~~~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           77 APFFLTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEECC
T ss_pred             CCchhhHHHHHHHHHhCCCEEEe
Confidence            98764444444 34555555543

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.00  E-value=6.2e-05  Score=65.38  Aligned_cols=80  Identities=24%  Similarity=0.344  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.++++....   .|..+..++.+.+.++.  -+++|++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  105 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDIL  105 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCEE
Confidence            478999999999999999999999999999999999888777657775422   24444334433333322  1479999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus       106 vnnAg  110 (266)
T 3grp_A          106 VNNAG  110 (266)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99988

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.00  E-value=2.1e-05  Score=68.85  Aligned_cols=100  Identities=18%  Similarity=0.173  Sum_probs=73.4

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCCc
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      .+++++|++||..|+ |..++.++.+++..|++|++++.+++..+.+++.   .|.+. +.... .+..    ++..+.|
T Consensus       117 la~l~~g~rVLDIGc-G~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~-v~~v~-gDa~----~l~d~~F  189 (298)
T 3fpf_A          117 LGRFRRGERAVFIGG-GPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDG-VNVIT-GDET----VIDGLEF  189 (298)
T ss_dssp             HTTCCTTCEEEEECC-CSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCS-EEEEE-SCGG----GGGGCCC
T ss_pred             HcCCCCcCEEEEECC-CccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCC-eEEEE-Cchh----hCCCCCc
Confidence            578999999999996 8777878888888899999999999988888742   35422 22211 1111    1223679


Q ss_pred             eEEEECCch----hhHHHHHHhcccCCEEEEEec
Q 042784          236 DVYLDNVGG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       236 d~vld~~g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      |+|+.....    ..+..+.+.|+|+|+++....
T Consensus       190 DvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          190 DVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             SEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            999976543    378899999999999997654

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.94  E-value=0.00011  Score=63.65  Aligned_cols=80  Identities=16%  Similarity=0.209  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.+++|+||+|++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+..++.+.+.+..  -+.+|++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   84 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   84 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence            46899999999999999999998999999999999888877765554321   124444344444333321  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        85 vnnAg   89 (263)
T 2a4k_A           85 AHFAG   89 (263)
T ss_dssp             EEGGG
T ss_pred             EECCC
Confidence            99987

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.93  E-value=5.3e-05  Score=66.19  Aligned_cols=103  Identities=14%  Similarity=0.225  Sum_probs=72.3

Q ss_pred             HHhCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC
Q 042784          157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       157 ~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      .....+.++++||-.|+ |. |..++.+++..  +.+|++++.+++..+.+++.   +|....+.... .++.+.   +.
T Consensus       105 ~~~~~~~~~~~VLDiG~-G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~---~~  178 (277)
T 1o54_A          105 AMMLDVKEGDRIIDTGV-GS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV-RDISEG---FD  178 (277)
T ss_dssp             HHHTTCCTTCEEEEECC-TT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC-CCGGGC---CS
T ss_pred             HHHhCCCCCCEEEEECC-cC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE-CCHHHc---cc
Confidence            34567899999999995 55 88899999986  45999999999988887743   24311122211 222211   22


Q ss_pred             CCCceEEEECCch--hhHHHHHHhcccCCEEEEEec
Q 042784          232 PNGIDVYLDNVGG--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       232 ~~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .+.+|+|+.....  ..+..+.+.|+++|.++....
T Consensus       179 ~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          179 EKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             CCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3479999987654  478899999999999887643

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.90  E-value=0.00011  Score=65.75  Aligned_cols=80  Identities=23%  Similarity=0.321  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC--C---ceeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY--D---DAFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~--~---~v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .+.+|||+||+|++|.++++.+...|++|++++++.++.+.+.+++   +.  .   ...|..+..++.+.+.++.  -+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            4789999999999999999998899999999999988776654333   32  1   1235555444444444332  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|++|.+.|
T Consensus        87 ~id~lv~nAg   96 (319)
T 3ioy_A           87 PVSILCNNAG   96 (319)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999988

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.88  E-value=7.9e-05  Score=63.93  Aligned_cols=80  Identities=21%  Similarity=0.306  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.++++....   .|..+..++.+.+.++.  -+++|++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   84 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDIL   84 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            478999999999999999999999999999999999888777667765322   24444333433333322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        85 v~nAg   89 (247)
T 3rwb_A           85 VNNAS   89 (247)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99988

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.88  E-value=0.00017  Score=62.55  Aligned_cols=105  Identities=19%  Similarity=0.159  Sum_probs=69.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC-----C-c--eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY-----D-D--AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~-----~-~--v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++..     . .  ..|..+..++.+.+.+..  -+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999999999999999999999988776654434421     1 1  124444344444343321  14


Q ss_pred             CceEEEECCch---hh---------------HHHHHHhccc-----CCEEEEEecccc
Q 042784          234 GIDVYLDNVGG---KM---------------LEAVLNHVNV-----HARIILCGMISQ  268 (356)
Q Consensus       234 ~~d~vld~~g~---~~---------------~~~~~~~l~~-----~G~~v~~g~~~~  268 (356)
                      ++|+++++.|.   +.               ...++..++.     .|+++.++....
T Consensus        86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  143 (267)
T 2gdz_A           86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG  143 (267)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccc
Confidence            69999999873   11               1233444432     588998877544

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.87  E-value=5.7e-05  Score=66.53  Aligned_cols=78  Identities=15%  Similarity=0.235  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .|.++||+||+|++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+..++.+.+.++  +++|+++.
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~--~~iD~lv~   92 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGV--SGADVLIN   92 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC--CCEEEEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc--CCCCEEEE
Confidence            57899999999999999999998999999999999998887765554321   12444434444444444  57999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        93 nAg   95 (291)
T 3rd5_A           93 NAG   95 (291)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            987

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.87  E-value=0.0001  Score=62.98  Aligned_cols=78  Identities=21%  Similarity=0.281  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +++++||+|++|++|.++++.+...|++|+++++++++.+.+.+++....++  |..+..++.+.+.+  -+++|++|++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~id~vi~~   83 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGS--VGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTT--CCCCCEEEEC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHH--cCCCCEEEEC
Confidence            4789999999999999999999999999999999988877665444322233  44442333333321  2469999999


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        84 Ag   85 (244)
T 3d3w_A           84 AA   85 (244)
T ss_dssp             CC
T ss_pred             Cc
Confidence            87

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.87  E-value=5.2e-05  Score=69.43  Aligned_cols=103  Identities=16%  Similarity=0.144  Sum_probs=77.2

Q ss_pred             hHHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHH
Q 042784          151 AAWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       151 ta~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~  229 (356)
                      ..+.++.+. ...-.|++|+|.|. |.+|..+++.++.+|++|+++++++.+...+. ..|.. +.      ++.+.+  
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG~-G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-~~G~~-v~------~Leeal--  273 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCGY-GEVGKGCCAALKAMGSIVYVTEIDPICALQAC-MDGFR-LV------KLNEVI--  273 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC------CHHHHT--
T ss_pred             HHHHHHHHhhCceecCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-HcCCE-ec------cHHHHH--
Confidence            444555443 33468999999997 99999999999999999999998887776666 56643 21      233333  


Q ss_pred             HCCCCceEEEECCchh-hH-HHHHHhcccCCEEEEEeccc
Q 042784          230 YFPNGIDVYLDNVGGK-ML-EAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       230 ~~~~~~d~vld~~g~~-~~-~~~~~~l~~~G~~v~~g~~~  267 (356)
                         ...|+|+.|.|.. .+ ...++.+++++.++.+|...
T Consensus       274 ---~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          274 ---RQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             ---TTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred             ---hcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCC
Confidence               2489999998864 34 37889999999999988654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.85  E-value=0.00013  Score=63.05  Aligned_cols=82  Identities=22%  Similarity=0.291  Sum_probs=57.9

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      -.+.++||+||+|++|.++++.+...|++|++++++.++.+.+.+++   +..   ...|..+..++.+.+.++.  -+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            35789999999999999999988889999999999988776654333   332   1134444344444333322  146


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|+++.+.|.
T Consensus       107 id~lv~~Ag~  116 (262)
T 3rkr_A          107 CDVLVNNAGV  116 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999874

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.85  E-value=0.0001  Score=63.71  Aligned_cols=80  Identities=19%  Similarity=0.305  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .++++||+||+|++|.++++.+...|++|++++++.++.+.+.++++....   .|..+..++.+.+.+..  -+++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   86 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDIL   86 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            478999999999999999998889999999999999888777667765321   24444344444443322  2479999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        87 v~~Ag   91 (259)
T 4e6p_A           87 VNNAA   91 (259)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.85  E-value=0.00017  Score=63.52  Aligned_cols=93  Identities=24%  Similarity=0.297  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -.|++|+|.|+ |.+|.++++.++..|++|++.+++.++.+.++ ++|+. .+++   .++.+.+     ..+|+|+.++
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~-~~~~---~~l~~~l-----~~aDvVi~~~  221 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLARIA-EMGME-PFHI---SKAAQEL-----RDVDVCINTI  221 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTSE-EEEG---GGHHHHT-----TTCSEEEECC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HCCCe-ecCh---hhHHHHh-----cCCCEEEECC
Confidence            46899999996 99999999999999999999999988877776 77865 3333   2343333     3589999998


Q ss_pred             chhh-HHHHHHhcccCCEEEEEecc
Q 042784          243 GGKM-LEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       243 g~~~-~~~~~~~l~~~G~~v~~g~~  266 (356)
                      .... -...+..+++++.++.++..
T Consensus       222 p~~~i~~~~l~~mk~~~~lin~ar~  246 (293)
T 3d4o_A          222 PALVVTANVLAEMPSHTFVIDLASK  246 (293)
T ss_dssp             SSCCBCHHHHHHSCTTCEEEECSST
T ss_pred             ChHHhCHHHHHhcCCCCEEEEecCC
Confidence            7542 23567789999999988763

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.85  E-value=0.00016  Score=63.28  Aligned_cols=104  Identities=21%  Similarity=0.310  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-HHH----HHHHhCCCc---eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-VKL----LKEEFGYDD---AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-~~~----~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .++++||+||+|++|.++++.+...|++|++++++.++ .+.    ++ +.|...   ..|..+..++.+.+.++.  -+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK-KNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH-HTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH-HhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999998999999999887543 222    23 335431   124444334433333321  14


Q ss_pred             CceEEEECCchh--------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          234 GIDVYLDNVGGK--------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       234 ~~d~vld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ++|+++++.|..                          ..+.+...++..|+++.++...+
T Consensus       107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  167 (283)
T 1g0o_A          107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITG  167 (283)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhh
Confidence            699999998731                          11334455556799999887554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.85  E-value=3.6e-05  Score=60.99  Aligned_cols=93  Identities=13%  Similarity=0.085  Sum_probs=61.2

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEE
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      ....++++|+|.|+ |.+|..+++.++..|.+|+++++++++.+.+++..|.. ++.... .+ .+.+.+....++|+||
T Consensus        14 ~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~-~~~~d~-~~-~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           14 SKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF-TVVGDA-AE-FETLKECGMEKADMVF   89 (155)
T ss_dssp             ---CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE-EEESCT-TS-HHHHHTTTGGGCSEEE
T ss_pred             hcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc-EEEecC-CC-HHHHHHcCcccCCEEE
Confidence            44567899999997 99999999999999999999999988877664234543 332221 11 1223332224699999


Q ss_pred             ECCchh-hHHHHHHhccc
Q 042784          240 DNVGGK-MLEAVLNHVNV  256 (356)
Q Consensus       240 d~~g~~-~~~~~~~~l~~  256 (356)
                      .|++.. ....+...++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHH
T ss_pred             EEeCCcHHHHHHHHHHHH
Confidence            999985 33334444443

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.85  E-value=0.00012  Score=63.99  Aligned_cols=80  Identities=25%  Similarity=0.431  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC-c----eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD-D----AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~-~----v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .++++||+||+|++|.++++.+...|++|++++++.++.+.+.++   .|.. .    ..|..+..++.+.+.++.  -+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            478999999999999999999888999999999988776655433   2321 1    124444344444333322  14


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|++|.+.|
T Consensus       111 ~iD~vi~~Ag  120 (279)
T 1xg5_A          111 GVDICINNAG  120 (279)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.83  E-value=0.00015  Score=62.63  Aligned_cols=80  Identities=14%  Similarity=0.143  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.....++.+... ..|..+..++.+.+.++.  -+++|+++.
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~  105 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVH  105 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            36889999999999999999888899999999988766433322556431 124444344444343322  247999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus       106 nAg  108 (260)
T 3gem_A          106 NAS  108 (260)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.83  E-value=8.5e-05  Score=63.69  Aligned_cols=80  Identities=20%  Similarity=0.351  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee---ecCChhhHHHHHHHHCCCCceEE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF---NYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~---~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      -.++++|||+||+|++|.++++.+...|++|+++++++++.+.+.+++.....+   |..+..++.+.+.+.  +++|++
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~l   88 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT--SNLDIL   88 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC--SCCSEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc--CCCCEE
Confidence            357899999999999999999999999999999999998888776566543222   333333344434332  469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        89 i~~Ag   93 (249)
T 3f9i_A           89 VCNAG   93 (249)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.83  E-value=8.5e-05  Score=63.62  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .+.+++|+||+|++|.++++.+...|++|+++++++++.+.+.+++|... ..|..+..++.+.+.+..  -+++|++++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn   83 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            36899999999999999999998999999999999888777664566321 134444344444333321  146999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        84 ~Ag   86 (245)
T 1uls_A           84 YAG   86 (245)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.83  E-value=6.1e-05  Score=64.14  Aligned_cols=79  Identities=14%  Similarity=0.082  Sum_probs=58.0

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      +.++||+||+|++|.++++.+...|++|+++++++++.+.+.++++..   ...|..+..++.+.+.++.  .+++|+++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            578999999999999999988899999999999998888776565432   1124444344443333322  24799999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      .+.|
T Consensus        83 nnAg   86 (235)
T 3l6e_A           83 HCAG   86 (235)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            9887

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.82  E-value=0.00027  Score=60.93  Aligned_cols=105  Identities=10%  Similarity=0.104  Sum_probs=70.4

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCce----eecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDA----FNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v----~~~~~~~~~~~~i~~~~--~  232 (356)
                      .|+++||+||+|  |+|.++++.+...|++|++++++++..+.+.+   +++...+    .|..+..++.+.+.+..  -
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            489999999876  89999999999999999999999877665543   3343222    34444344433333322  1


Q ss_pred             CCceEEEECCch-----------h----hH---------------HHHHHhcccCCEEEEEecccc
Q 042784          233 NGIDVYLDNVGG-----------K----ML---------------EAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       233 ~~~d~vld~~g~-----------~----~~---------------~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +++|+++++.|.           +    .+               ..+...++.+|++|.++...+
T Consensus        85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~  150 (256)
T 4fs3_A           85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGG  150 (256)
T ss_dssp             CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGG
T ss_pred             CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccc
Confidence            579999998772           0    11               122344577899999887554

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.81  E-value=7.2e-05  Score=64.23  Aligned_cols=80  Identities=26%  Similarity=0.473  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+|++|++|.++++.+...|++|+++++++++.+.+.++++..   ...|..+..++.+.+.++.  -+++|++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   87 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDIL   87 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4789999999999999999999999999999999998887776555532   1235555444444443332  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        88 v~nAg   92 (248)
T 3op4_A           88 VNNAG   92 (248)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.81  E-value=9.9e-05  Score=63.75  Aligned_cols=80  Identities=21%  Similarity=0.284  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.++++....   .|..+..++.+.+.++.  -+++|++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   87 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDIL   87 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            478999999999999999999999999999999999988887767765321   24444334444333322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        88 i~~Ag   92 (261)
T 3n74_A           88 VNNAG   92 (261)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99887

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.81  E-value=0.00016  Score=64.04  Aligned_cols=81  Identities=12%  Similarity=0.147  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc----eeecCCh-hhHHHHHHHHC--C
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD----AFNYNSE-MSFDAALTKYF--P  232 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~----v~~~~~~-~~~~~~i~~~~--~  232 (356)
                      ..++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +...    ..|..+. ..+...+.++.  -
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            35789999999999999999988889999999999988765554343   2111    1244442 22222222221  1


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +++|++|.+.|
T Consensus        90 g~iD~lv~nAg  100 (311)
T 3o26_A           90 GKLDILVNNAG  100 (311)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            46999999988

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.80  E-value=9.9e-05  Score=64.50  Aligned_cols=80  Identities=20%  Similarity=0.275  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.++++....   .|..+..++.+.+.+..  -+++|++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  105 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVL  105 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            478999999999999999999999999999999999888777656665322   34444344444343322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus       106 v~nAg  110 (277)
T 4dqx_A          106 VNNAG  110 (277)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99988

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.80  E-value=0.00018  Score=62.76  Aligned_cols=80  Identities=13%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSDD---NVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+  |++|.++++.+...|++|++++++++   ..+.+.++.+....  .|..+..++.+.+.++.  -++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999998  99999999999889999999998765   44444434453222  24444334444333322  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        85 id~lv~nAg   93 (275)
T 2pd4_A           85 LDFIVHSVA   93 (275)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999887

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.79  E-value=8.6e-05  Score=63.83  Aligned_cols=80  Identities=21%  Similarity=0.308  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++   .|...   ..|..+..++.+.+.+..  -+++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999989999999999999887665543   34431   234444344443333322  1579


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++++.|
T Consensus        86 DiLVNNAG   93 (254)
T 4fn4_A           86 DVLCNNAG   93 (254)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99999887

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.78  E-value=0.00012  Score=63.84  Aligned_cols=80  Identities=23%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-e--eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-A--FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.++++... .  .|..+..++.+.+.++.  -+++|++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  106 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDVL  106 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999999998999999999999988877766776431 1  24444344444333322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus       107 VnnAg  111 (272)
T 4dyv_A          107 FNNAG  111 (272)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.78  E-value=0.00011  Score=63.34  Aligned_cols=80  Identities=14%  Similarity=0.190  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC---C---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY---D---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~---~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++..   .   ...|..+..++.+.+.++.  -+++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI   84 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999999999888777655432   1   1134444344444343322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        85 d~lv~nAg   92 (257)
T 3imf_A           85 DILINNAA   92 (257)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999988

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.78  E-value=8.8e-05  Score=63.49  Aligned_cols=104  Identities=14%  Similarity=0.050  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      +++|||+||++++|.++++.+...|++|+++++++++.+.+.++.+....  .|..+..++.+.+.+..  -+++|++++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            37899999999999999999999999999999999888877744332111  24444333333333322  157999999


Q ss_pred             CCch-----------hhH---------------HHHHHhc-ccCCEEEEEecccc
Q 042784          241 NVGG-----------KML---------------EAVLNHV-NVHARIILCGMISQ  268 (356)
Q Consensus       241 ~~g~-----------~~~---------------~~~~~~l-~~~G~~v~~g~~~~  268 (356)
                      +.|.           +.|               +.+...| +.+|+++.++...+
T Consensus        82 NAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~  136 (247)
T 3ged_A           82 NACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRA  136 (247)
T ss_dssp             CCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            9872           111               2233333 56799998877654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.78  E-value=0.00012  Score=63.46  Aligned_cols=80  Identities=16%  Similarity=0.136  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKL-KGCKVVGSTGSDDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~-~G~~V~~~~~s~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+||+|++|.++++.+.. .|++|++++++.++.+.+.+++   +.. .+  .|..+..++.+.+.++.  -++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999998888777 8999999999887665544333   332 12  34444334444333321  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        83 id~li~~Ag   91 (276)
T 1wma_A           83 LDVLVNNAG   91 (276)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999987

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.78  E-value=0.00013  Score=63.85  Aligned_cols=80  Identities=21%  Similarity=0.360  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.++++....   .|..+..++.+.+.++.  -+++|++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  107 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKL  107 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            478999999999999999999889999999999998888777667765321   24444344433333322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus       108 vnnAg  112 (277)
T 3gvc_A          108 VANAG  112 (277)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.77  E-value=7.1e-05  Score=64.41  Aligned_cols=105  Identities=21%  Similarity=0.342  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|+++||+||++++|.++++.+...|++|+++++++++.+.+.++   .|...   ..|..+..++.+.+.+..  -+++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            489999999999999999999999999999999998876655433   34321   124444444444444432  2579


Q ss_pred             eEEEECCchh--------------------------hHHHHHHhc-c--cCCEEEEEecccc
Q 042784          236 DVYLDNVGGK--------------------------MLEAVLNHV-N--VHARIILCGMISQ  268 (356)
Q Consensus       236 d~vld~~g~~--------------------------~~~~~~~~l-~--~~G~~v~~g~~~~  268 (356)
                      |+++++.|..                          ..+.++..+ +  .+|+++.++...+
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~  149 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTS  149 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhh
Confidence            9999998820                          113344545 2  4589999887654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.77  E-value=0.00028  Score=60.41  Aligned_cols=80  Identities=14%  Similarity=0.182  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC--C-ce--eecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY--D-DA--FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~--~-~v--~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++..  . ..  .|..+..++.+.+.++.  -+.+|
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   84 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            478999999999999999998888999999999998877666545542  1 11  24444334444333321  14699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      ++|.+.|
T Consensus        85 ~li~~Ag   91 (251)
T 1zk4_A           85 TLVNNAG   91 (251)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.76  E-value=1.8e-05  Score=67.37  Aligned_cols=103  Identities=15%  Similarity=0.183  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC-CceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY-DDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~-~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      -.|+++||+|+++++|.++++.+...|++|+++++++++.+..+ .-.+ ....|..+..++.+.+.++  +++|+++++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~--g~iDiLVNN   85 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPR-HPRIRREELDITDSQRLQRLFEAL--PRLDVLVNN   85 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCC-CTTEEEEECCTTCHHHHHHHHHHC--SCCSEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhh-cCCeEEEEecCCCHHHHHHHHHhc--CCCCEEEEC
Confidence            36999999999999999999999999999999998877655332 1011 1123445544555445443  569999999


Q ss_pred             Cchh---------h---------------HHHHHHhc-ccCCEEEEEecccc
Q 042784          242 VGGK---------M---------------LEAVLNHV-NVHARIILCGMISQ  268 (356)
Q Consensus       242 ~g~~---------~---------------~~~~~~~l-~~~G~~v~~g~~~~  268 (356)
                      .|-.         .               .+.++..+ +.+|++|.++...+
T Consensus        86 AGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  137 (242)
T 4b79_A           86 AGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYS  137 (242)
T ss_dssp             CCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGG
T ss_pred             CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            8820         1               13344455 45799999887654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.76  E-value=0.00048  Score=59.91  Aligned_cols=104  Identities=17%  Similarity=0.291  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHH---HhCCCce---eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKE---EFGYDDA---FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++ .++.+.+.+   +.|....   .|..+..++.+.+.+..  -++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  109 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGG  109 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999998999999988654 344444332   3344311   24444344444444322  146


Q ss_pred             ceEEEECCch-----------h---------------hHHHHHHhcccCCEEEEEeccc
Q 042784          235 IDVYLDNVGG-----------K---------------MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       235 ~d~vld~~g~-----------~---------------~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +|+++.+.|.           +               ..+.+...++.+|+++.++...
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~  168 (271)
T 3v2g_A          110 LDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNL  168 (271)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGG
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChh
Confidence            9999999872           0               1233455667789999887644

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.76  E-value=9.9e-05  Score=63.58  Aligned_cols=80  Identities=23%  Similarity=0.293  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+..++.+.+.+..  -+++|++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            47899999999999999999999999999999999888776664554321   134444344444444322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        84 v~nAg   88 (254)
T 1hdc_A           84 VNNAG   88 (254)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.75  E-value=6.3e-05  Score=65.93  Aligned_cols=80  Identities=20%  Similarity=0.201  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC---C-C-c--eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG---Y-D-D--AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g---~-~-~--v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.+++.   . . .  ..|..+..++.+.+.++.  -++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  111 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR  111 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999998999999999999887766553432   1 1 1  234555344444333322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       112 iD~lvnnAG  120 (281)
T 4dry_A          112 LDLLVNNAG  120 (281)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.75  E-value=0.00021  Score=63.06  Aligned_cols=80  Identities=20%  Similarity=0.374  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC---C-c--eeecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY---D-D--AFNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~---~-~--v~~~~~~~~~~~~i~~~~--~  232 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |.   . .  ..|..+..++.+.+.+..  -
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999999999889999999999988766554333   32   1 1  124444334443333321  1


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +++|+++.+.|
T Consensus       105 g~iD~lvnnAG  115 (297)
T 1xhl_A          105 GKIDILVNNAG  115 (297)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46999999887

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.75  E-value=0.00019  Score=62.31  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++    |...   ..|..+..++.+.+.++.  -++
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   99 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999899999999999988766554333    5431   124454344444333321  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       100 iD~lvnnAg  108 (267)
T 1vl8_A          100 LDTVVNAAG  108 (267)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.75  E-value=0.0019  Score=58.18  Aligned_cols=77  Identities=10%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHC-CC-EEEEEeCChHHHHHHHHHhCCCce----eecCChhhHHHHHHHHCCCCce
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLK-GC-KVVGSTGSDDNVKLLKEEFGYDDA----FNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~-G~-~V~~~~~s~~~~~~~~~~~g~~~v----~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      -.+.+|||+||+|.+|..+++.+... |. +|+++++++.+...+.+.+....+    .|..+...    +.+.. .++|
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----l~~~~-~~~D   93 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLER----LNYAL-EGVD   93 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHH----HHHHT-TTCS
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHH----HHHHH-hcCC
Confidence            34789999999999999998887777 98 999999998887766645543211    23333222    33322 2699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      +||.+++.
T Consensus        94 ~Vih~Aa~  101 (344)
T 2gn4_A           94 ICIHAAAL  101 (344)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.75  E-value=9.5e-05  Score=64.39  Aligned_cols=80  Identities=16%  Similarity=0.262  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+..++.+.+.+..  -+++|++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   89 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIV   89 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            47899999999999999999999999999999999888777765776532   234444344444333322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        90 v~nAg   94 (271)
T 3tzq_B           90 DNNAA   94 (271)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99877

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.75  E-value=0.0002  Score=60.98  Aligned_cols=78  Identities=22%  Similarity=0.265  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .+.++||+||+|++|..+++.+...|++|+++++++++.+.+.+++....++  |..+..++.+.+.+  -+++|+++++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~id~vi~~   83 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGG--IGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTT--CCCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHH--cCCCCEEEEC
Confidence            4789999999999999999999899999999999988776665343222233  44443333333331  2469999999


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        84 Ag   85 (244)
T 1cyd_A           84 AA   85 (244)
T ss_dssp             CC
T ss_pred             Cc
Confidence            88

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.75  E-value=0.00012  Score=62.80  Aligned_cols=80  Identities=14%  Similarity=0.211  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc----eeecCChhhHHHHHHHHC-CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD----AFNYNSEMSFDAALTKYF-PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~----v~~~~~~~~~~~~i~~~~-~~~~d~v  238 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.++++...    ..|..+..++.+.+.+.. -+++|++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l   89 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSIL   89 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEE
Confidence            47899999999999999999988899999999999888776654655321    124444333433333221 1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      |.+.|
T Consensus        90 i~~Ag   94 (254)
T 2wsb_A           90 VNSAG   94 (254)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99987

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.75  E-value=0.00011  Score=64.31  Aligned_cols=80  Identities=19%  Similarity=0.225  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||++++|.++++.+...|++|++++++.++.+.+.++++....   .|..+..++.+.+.++.  -+++|++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   83 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL   83 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            478999999999999999999999999999999999988877756654322   24444334433333322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        84 vnnAg   88 (281)
T 3zv4_A           84 IPNAG   88 (281)
T ss_dssp             ECCCC
T ss_pred             EECCC
Confidence            99987

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.73  E-value=0.00013  Score=63.24  Aligned_cols=80  Identities=19%  Similarity=0.293  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |...   ..|..+..++.+.+.++.  -+++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            3689999999999999999999999999999999988876665443   3321   134454344444333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        83 D~lVnnAG   90 (264)
T 3tfo_A           83 DVLVNNAG   90 (264)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.72  E-value=0.0002  Score=61.95  Aligned_cols=80  Identities=19%  Similarity=0.296  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++    +...   ..|..+..++.+.+.+..  -++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999889999999999988766554333    5321   124444344444443322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        86 id~lv~~Ag   94 (263)
T 3ai3_A           86 ADILVNNAG   94 (263)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.72  E-value=0.00021  Score=61.90  Aligned_cols=80  Identities=18%  Similarity=0.226  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCCc---eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF-----GYDD---AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~-----g~~~---v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++     +...   ..|..+..++.+.+.+..  -+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999988889999999999988766554333     4321   124444344444443322  14


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+++++.|
T Consensus        92 ~id~lv~nAg  101 (267)
T 1iy8_A           92 RIDGFFNNAG  101 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999986

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.72  E-value=0.00026  Score=61.82  Aligned_cols=80  Identities=18%  Similarity=0.317  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |...   ..|..+..++.+.+.++.  -+++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999999999999987765544333   4321   134444344444333321  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus       101 D~lv~~Ag  108 (277)
T 2rhc_B          101 DVLVNNAG  108 (277)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.72  E-value=0.00028  Score=59.19  Aligned_cols=97  Identities=8%  Similarity=0.023  Sum_probs=65.1

Q ss_pred             CEEEEEcCCChHHHHHHHHHH-HCCCEEEEEeCChH-HHHHHHHHhCCC-ce--eecCChhhHHHHHHHHCCCCceEEEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAK-LKGCKVVGSTGSDD-NVKLLKEEFGYD-DA--FNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~-~~G~~V~~~~~s~~-~~~~~~~~~g~~-~v--~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      ++|||+||+|++|.++++.+. ..|++|++++++++ +.+.+. ..+.. .+  .|..+..++.+.+     .++|++|.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~-----~~~d~vv~   79 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI-IDHERVTVIEGSFQNPGXLEQAV-----TNAEVVFV   79 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH-HTSTTEEEEECCTTCHHHHHHHH-----TTCSEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc-cCCCceEEEECCCCCHHHHHHHH-----cCCCEEEE
Confidence            469999999999999988877 89999999999988 666553 22322 12  2444433333333     36899999


Q ss_pred             CCchhh--HHHHHHhcccC--CEEEEEecccc
Q 042784          241 NVGGKM--LEAVLNHVNVH--ARIILCGMISQ  268 (356)
Q Consensus       241 ~~g~~~--~~~~~~~l~~~--G~~v~~g~~~~  268 (356)
                      +.|...  ...+++.++..  ++++.++....
T Consensus        80 ~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           80 GAMESGSDMASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             cCCCCChhHHHHHHHHHhcCCCeEEEEeecee
Confidence            998632  34444444433  68888876543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.71  E-value=0.00017  Score=63.87  Aligned_cols=93  Identities=20%  Similarity=0.280  Sum_probs=72.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -.|.+|+|.|+ |.+|..+++.++..|++|++.+++.++.+.+. ++|.. ++++   .++.+.+     .++|+|+.++
T Consensus       155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~-~~~~---~~l~~~l-----~~aDvVi~~~  223 (300)
T 2rir_A          155 IHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARIT-EMGLV-PFHT---DELKEHV-----KDIDICINTI  223 (300)
T ss_dssp             STTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCE-EEEG---GGHHHHS-----TTCSEEEECC
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCCe-EEch---hhHHHHh-----hCCCEEEECC
Confidence            46899999997 99999999999999999999999988877776 67764 3333   2333332     3589999999


Q ss_pred             chhhH-HHHHHhcccCCEEEEEecc
Q 042784          243 GGKML-EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       243 g~~~~-~~~~~~l~~~G~~v~~g~~  266 (356)
                      +...+ ...++.+++++.++.++..
T Consensus       224 p~~~i~~~~~~~mk~g~~lin~a~g  248 (300)
T 2rir_A          224 PSMILNQTVLSSMTPKTLILDLASR  248 (300)
T ss_dssp             SSCCBCHHHHTTSCTTCEEEECSST
T ss_pred             ChhhhCHHHHHhCCCCCEEEEEeCC
Confidence            86432 3467789999999988764

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.71  E-value=0.00054  Score=60.30  Aligned_cols=106  Identities=15%  Similarity=0.110  Sum_probs=69.3

Q ss_pred             CCCCEEEEEcCCCh--HHHHHHHHHHHCCCEEEEEeCChHHHHHH---HHHhCCCce--eecCChhhHHHHHHHHC--CC
Q 042784          163 KSGSNVFVSAAAGG--VGMFAGQLAKLKGCKVVGSTGSDDNVKLL---KEEFGYDDA--FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~--vG~~~i~la~~~G~~V~~~~~s~~~~~~~---~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~  233 (356)
                      -.|+++||+||+|+  +|.++++.+...|++|++++++++..+.+   .++.+....  .|..+..++.+.+.++.  -+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            35899999999965  99999999999999999999886543333   224443222  24444344444333322  24


Q ss_pred             CceEEEECCchh------------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          234 GIDVYLDNVGGK------------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       234 ~~d~vld~~g~~------------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ++|+++.+.|..                              ..+.++..++.+|+++.++....
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~  173 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGA  173 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhh
Confidence            699999998721                              11334455667899999887554

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=0.00021  Score=61.33  Aligned_cols=81  Identities=14%  Similarity=0.204  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----C-C-Cce--eecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF-----G-Y-DDA--FNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~-----g-~-~~v--~~~~~~~~~~~~i~~~~--~  232 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++     + . ...  .|..+..++.+.+.++.  -
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999999888888999999999988876665433     2 1 112  34444344444333322  1


Q ss_pred             CCceEEEECCch
Q 042784          233 NGIDVYLDNVGG  244 (356)
Q Consensus       233 ~~~d~vld~~g~  244 (356)
                      +++|+++.+.|.
T Consensus        86 g~iD~lvnnAg~   97 (250)
T 3nyw_A           86 GAVDILVNAAAM   97 (250)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999883

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.71  E-value=0.00015  Score=62.45  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHH---HHHHHCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDA---ALTKYFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~---~i~~~~~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |..   ...|..+..++.+   .+.+.  ++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH--AP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--SC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh--CC
Confidence            4789999999999999999999999999999999988766655443   332   1124444333333   33333  57


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        84 id~lv~nAg   92 (252)
T 3h7a_A           84 LEVTIFNVG   92 (252)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEECCC
Confidence            999999988

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.71  E-value=0.00015  Score=62.32  Aligned_cols=80  Identities=24%  Similarity=0.312  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.++++....   .|..+..++.+.+.+..  -+.+|++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   84 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            478999999999999999999888999999999998887776656654311   24444344443333321  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        85 v~~Ag   89 (253)
T 1hxh_A           85 VNNAG   89 (253)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.70  E-value=0.0003  Score=60.87  Aligned_cols=105  Identities=9%  Similarity=0.079  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCCCh--HHHHHHHHHHHCCCEEEEEeCChHHHHHHH---HHhCCC--ce--eecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGG--VGMFAGQLAKLKGCKVVGSTGSDDNVKLLK---EEFGYD--DA--FNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~--vG~~~i~la~~~G~~V~~~~~s~~~~~~~~---~~~g~~--~v--~~~~~~~~~~~~i~~~~--~  232 (356)
                      .|+++||+||+|.  +|.++++.+...|++|++++++++..+.++   ++++..  ..  .|..+..++.+.+.++.  -
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            4789999999955  999999888889999999998765444433   233331  11  24444344444444332  1


Q ss_pred             CCceEEEECCchh------------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          233 NGIDVYLDNVGGK------------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       233 ~~~d~vld~~g~~------------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +++|+++.+.|..                              ..+.++..++.+|+++.++....
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~  151 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGG  151 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGG
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccc
Confidence            4699999987621                              11233345566789999887554

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.70  E-value=0.00014  Score=63.02  Aligned_cols=80  Identities=21%  Similarity=0.289  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCce----eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDDA----FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~v----~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +...+    .|..+..++.+.+.+..  -++
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG   88 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999999999999988876654443   21111    24444334443333322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        89 id~lvnnAg   97 (262)
T 3pk0_A           89 IDVVCANAG   97 (262)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.70  E-value=8.5e-05  Score=62.61  Aligned_cols=89  Identities=11%  Similarity=0.071  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .++++||+||+|++|.++++.+...|++|++++++++              .|..+..++.+.+.++  +++|+++.+.|
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D~~~~~~v~~~~~~~--g~id~lv~nAg   68 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------LDISDEKSVYHYFETI--GAFDHLIVTAG   68 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CCTTCHHHHHHHHHHH--CSEEEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cCCCCHHHHHHHHHHh--CCCCEEEECCC
Confidence            4688999999999999999988888999999986543              3444434455445544  56999999887


Q ss_pred             hh---------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          244 GK---------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       244 ~~---------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ..                           ..+.++..++.+|+++.++....
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~  120 (223)
T 3uce_A           69 SYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLS  120 (223)
T ss_dssp             CCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGG
T ss_pred             CCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhh
Confidence            21                           11233345566789998876544

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.70  E-value=0.00026  Score=60.67  Aligned_cols=80  Identities=20%  Similarity=0.407  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |.. .  ..|..+..++.+.+.+..  -+++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999889999999999988776554343   432 1  124444344444333321  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++++.|
T Consensus        86 d~lv~nAg   93 (247)
T 2jah_A           86 DILVNNAG   93 (247)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.70  E-value=0.00013  Score=64.60  Aligned_cols=81  Identities=20%  Similarity=0.304  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      -.|+++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +..   ...|..+..++.+.+.++.  -++
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            35789999999999999999999999999999999988876655443   332   1234454344444443332  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus       109 id~lvnnAg  117 (301)
T 3tjr_A          109 VDVVFSNAG  117 (301)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999988

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.69  E-value=0.0003  Score=61.54  Aligned_cols=104  Identities=17%  Similarity=0.187  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC------------hHHHHHHHH---HhCCCc---eeecCChhhHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS------------DDNVKLLKE---EFGYDD---AFNYNSEMSFDA  225 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~~  225 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++            .++.+.+..   ..+...   ..|..+..++.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            47899999999999999999999999999999876            444443322   234321   124444344443


Q ss_pred             HHHHHC--CCCceEEEECCch---------h---------------hHHHHHHhcccCCEEEEEeccc
Q 042784          226 ALTKYF--PNGIDVYLDNVGG---------K---------------MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       226 ~i~~~~--~~~~d~vld~~g~---------~---------------~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.++.  -+++|+++.+.|.         +               ..+.++..++.+|+++.++...
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  156 (287)
T 3pxx_A           89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVA  156 (287)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHH
T ss_pred             HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccch
Confidence            333322  1469999999873         1               1123344556779999887644

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.69  E-value=0.00017  Score=62.26  Aligned_cols=80  Identities=24%  Similarity=0.299  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.++++..   ...|..+..++.+.+.+..  -+++|++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   85 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4789999999999999999988889999999999988877665454321   1234444344444443322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        86 v~~Ag   90 (260)
T 1nff_A           86 VNNAG   90 (260)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.69  E-value=0.00024  Score=61.84  Aligned_cols=80  Identities=16%  Similarity=0.298  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHH---HHCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALT---KYFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~---~~~~~~  234 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |...   ..|..+..++.+.+.   +..+++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   99 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   99 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999987766544333   4321   234444333333333   333357


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus       100 id~lv~nAg  108 (273)
T 1ae1_A          100 LNILVNNAG  108 (273)
T ss_dssp             CCEEEECCC
T ss_pred             CcEEEECCC
Confidence            999999987

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.69  E-value=0.00047  Score=56.05  Aligned_cols=93  Identities=12%  Similarity=0.073  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCcee-ecCChhhHHHHHHHH-CCCCceEEEEC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAF-NYNSEMSFDAALTKY-FPNGIDVYLDN  241 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~-~~~~~~~~~~~i~~~-~~~~~d~vld~  241 (356)
                      +++|+|.|+ |.+|..+++.++.. |.+|+++++++++.+.++ +.|...+. |..+ .   +.+.+. .-.++|+|+.+
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~-~~g~~~~~gd~~~-~---~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHR-SEGRNVISGDATD-P---DFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH-HTTCCEEECCTTC-H---HHHHTBCSCCCCCEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH-HCCCCEEEcCCCC-H---HHHHhccCCCCCCEEEEe
Confidence            678999996 99999999999998 999999999999999888 77876332 3332 2   223444 22479999999


Q ss_pred             Cchh-hHHH---HHHhcccCCEEEEE
Q 042784          242 VGGK-MLEA---VLNHVNVHARIILC  263 (356)
Q Consensus       242 ~g~~-~~~~---~~~~l~~~G~~v~~  263 (356)
                      +++. ....   ..+.+.+..+++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          113 MPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            9864 2222   33444445566543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.69  E-value=0.00042  Score=60.93  Aligned_cols=105  Identities=16%  Similarity=0.241  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-HHHHHH---HhCCCce---eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-VKLLKE---EFGYDDA---FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-~~~~~~---~~g~~~v---~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++.++ .+.+.+   +.|....   .|..+..++.+.+.++.  -++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  125 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS  125 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999887653 222221   3343311   24444334443333322  146


Q ss_pred             ceEEEECCchh---------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          235 IDVYLDNVGGK---------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       235 ~d~vld~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +|+++.+.|..                           ..+.++..++.+|+++.++....
T Consensus       126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~  186 (291)
T 3ijr_A          126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVA  186 (291)
T ss_dssp             CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHH
T ss_pred             CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHh
Confidence            99999987620                           12334445667899998876543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.68  E-value=0.00028  Score=60.63  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=56.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----C-CCc--eeec--CChhhHHHHHHHHC--
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----G-YDD--AFNY--NSEMSFDAALTKYF--  231 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g-~~~--v~~~--~~~~~~~~~i~~~~--  231 (356)
                      -.|+++||+||+|++|.++++.+...|++|+++++++++.+.+.+++    + ...  ..|.  .+..++.+.+.++.  
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            35789999999999999999998899999999999988766554332    2 111  2233  33233333333322  


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                      .+++|+++.+.|
T Consensus        90 ~g~id~lv~nAg  101 (252)
T 3f1l_A           90 YPRLDGVLHNAG  101 (252)
T ss_dssp             CSCCSEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            246999999987

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.68  E-value=0.0002  Score=62.74  Aligned_cols=80  Identities=15%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC---Cc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY---DD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~---~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .++++||+||+|++|.++++.+...|++|++++++.++.+.+.+++..   ..   ..|..+..++.+.+.++.  -+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHL  106 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999999999998887776655432   21   124444334444343322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus       107 D~lVnnAg  114 (283)
T 3v8b_A          107 DIVVANAG  114 (283)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.68  E-value=0.00049  Score=60.63  Aligned_cols=80  Identities=15%  Similarity=0.129  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCChHHHHHHH---HHhCCCcee--ecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK---EEFGYDDAF--NYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~---~~~g~~~v~--~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+|  ++|.++++.+...|++|++++++++..+.++   ++.+....+  |..+..++.+.+.++.  -++
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS  108 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999987  9999999998899999999998875443332   244543232  4444344444343332  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus       109 iD~lVnnAG  117 (296)
T 3k31_A          109 LDFVVHAVA  117 (296)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.68  E-value=0.00022  Score=62.02  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++.....  .|..+..++.+.+.+..  -+++|+++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   87 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   87 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            478999999999999999999999999999999998887766645432222  24444334443333321  14699999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      .+.|
T Consensus        88 ~nAg   91 (270)
T 1yde_A           88 NNAG   91 (270)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9886

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.68  E-value=0.00012  Score=63.21  Aligned_cols=80  Identities=18%  Similarity=0.151  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-e--eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-A--FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.++++... .  .|..+..++.+.+.+..  -+++|++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   85 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGL   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            47899999999999999999999999999999998887766654555421 1  24444344444343322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        86 v~nAg   90 (257)
T 3tpc_A           86 VNCAG   90 (257)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.68  E-value=0.00015  Score=63.86  Aligned_cols=80  Identities=20%  Similarity=0.257  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC---Cce----eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY---DDA----FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~---~~v----~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++..   ..+    .|..+..++.+.+.++.  -++
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  119 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA  119 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999998877666545532   111    24444334433333322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       120 iD~lvnnAg  128 (293)
T 3rih_A          120 LDVVCANAG  128 (293)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.68  E-value=0.00027  Score=61.65  Aligned_cols=80  Identities=16%  Similarity=0.204  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ce----eecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DA----FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v----~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++... .+    .|..+..++.+.+.++.  -+++|
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  107 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD  107 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999999999999999999988776655454321 11    24444334443333321  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      ++|.+.|
T Consensus       108 ~lvnnAg  114 (276)
T 2b4q_A          108 ILVNNAG  114 (276)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.67  E-value=0.00024  Score=61.33  Aligned_cols=80  Identities=18%  Similarity=0.229  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHHH---hCCCc-e--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKEE---FGYDD-A--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||+|++|.++++.+...|++|+++ .+++++.+.+.++   .|... .  .|..+..++.+.+.++.  -++
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999998999999988 4444444433323   34321 1  24444344444343322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        87 id~lv~nAg   95 (259)
T 3edm_A           87 IHGLVHVAG   95 (259)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999886

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.67  E-value=0.00021  Score=61.94  Aligned_cols=81  Identities=11%  Similarity=0.171  Sum_probs=58.0

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      -.++++||+|+++++|.++++.+...|++|+++++++++.+.+.+++   |...   ..|..+..++.+.+.++.  -++
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999999899999999999988776655443   3321   124455344444343322  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        89 id~lv~nAg   97 (264)
T 3ucx_A           89 VDVVINNAF   97 (264)
T ss_dssp             CSEEEECCC
T ss_pred             CcEEEECCC
Confidence            999999885

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.67  E-value=0.00017  Score=62.96  Aligned_cols=80  Identities=20%  Similarity=0.296  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-e--eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-A--FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.++||+||+|++|.++++.+...|++|++++++.++.+.+.++++... .  .|..+..++.+.+.++.  .+++|++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            46899999999999999999999999999999999888777765655431 1  24444344444333322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        84 v~~Ag   88 (281)
T 3m1a_A           84 VNNAG   88 (281)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.67  E-value=0.00019  Score=62.82  Aligned_cols=81  Identities=15%  Similarity=0.152  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC--ce----eecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD--DA----FNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~--~v----~~~~~~~~~~~~i~~~~--~  232 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +..  .+    .|..+..++.+.+.+..  -
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999998899999999999988766554343   321  11    24444344444444332  1


Q ss_pred             CCceEEEECCch
Q 042784          233 NGIDVYLDNVGG  244 (356)
Q Consensus       233 ~~~d~vld~~g~  244 (356)
                      +++|+++.+.|.
T Consensus        90 g~id~lv~nAg~  101 (281)
T 3svt_A           90 GRLHGVVHCAGG  101 (281)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            469999999883

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.67  E-value=0.00031  Score=64.49  Aligned_cols=102  Identities=17%  Similarity=0.127  Sum_probs=76.0

Q ss_pred             HHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHH
Q 042784          152 AWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       152 a~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      .+.++.+. ...-.|++|+|.|. |.+|..+++.++.+|++|+++++++.+...+. ..|.. +.      ++.+.++  
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~-G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-~~G~~-vv------~LeElL~--  301 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGY-GDVGKGSAQSLAGAGARVKVTEVDPICALQAA-MDGFE-VV------TLDDAAS--  301 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-HTTCE-EC------CHHHHGG--
T ss_pred             HHHHHHHhcCCcccCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-hcCce-ec------cHHHHHh--
Confidence            44444432 34568999999996 99999999999999999999998777665555 55653 22      2333333  


Q ss_pred             CCCCceEEEECCchh-hH-HHHHHhcccCCEEEEEeccc
Q 042784          231 FPNGIDVYLDNVGGK-ML-EAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       231 ~~~~~d~vld~~g~~-~~-~~~~~~l~~~G~~v~~g~~~  267 (356)
                         .+|+|+.+.|.. .+ ...+..|++++.++.+|...
T Consensus       302 ---~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          302 ---TADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             ---GCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             ---hCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence               489999999875 32 67889999999999988654

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.67  E-value=0.00021  Score=61.79  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.++||+|++|++|.++++.+...|++|++++++.++.+.+.++++...   ..|..+..++.+.+.++.  -+++|++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   90 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA   90 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            47899999999999999999999999999999998877766655666431   124444344444443322  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      |.+.|
T Consensus        91 i~~Ag   95 (265)
T 2o23_A           91 VNCAG   95 (265)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99886

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.67  E-value=0.00025  Score=61.18  Aligned_cols=80  Identities=16%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCC-ce--eecCChhhHHHHHHHHC-CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF-----GYD-DA--FNYNSEMSFDAALTKYF-PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~-----g~~-~v--~~~~~~~~~~~~i~~~~-~~~  234 (356)
                      .++++||+|++|++|.++++.+...|++|+++++++++.+.+.+++     +.. ..  .|..+..++.+.+.+.. ..+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999988889999999999988766554343     311 11  35555444444444332 113


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        86 id~lv~~Ag   94 (260)
T 2z1n_A           86 ADILVYSTG   94 (260)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.66  E-value=0.00024  Score=61.40  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-c--eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-D--AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++... .  ..|..+..++.+.+.+..  -+++|++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~l   90 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLL   90 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4789999999999999999999899999999999988877665444321 1  234444344444343321  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        91 v~~Ag   95 (263)
T 3ak4_A           91 CANAG   95 (263)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.66  E-value=0.00025  Score=61.93  Aligned_cols=78  Identities=26%  Similarity=0.227  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC-CCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF-PNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~-~~~~d~vl  239 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++.++.+.+.++++....   .|..+..++.+.+.++. -+++|+++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~lv  108 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAV  108 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence            478999999999999999998888999999999999988887767765321   24444444555555442 24799999


Q ss_pred             EC
Q 042784          240 DN  241 (356)
Q Consensus       240 d~  241 (356)
                      .+
T Consensus       109 ~~  110 (281)
T 3ppi_A          109 VA  110 (281)
T ss_dssp             EC
T ss_pred             Ec
Confidence            88

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.65  E-value=0.00028  Score=59.78  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=57.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      +.++||+||+|++|.+.++.+...|++|+++++++++.+.+.++++....  .|..+..++.+.+.++.  -+++|+++.
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~   84 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALVN   84 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57899999999999999999988999999999998887766645542222  24444344444333321  146999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        85 ~Ag   87 (234)
T 2ehd_A           85 NAG   87 (234)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.65  E-value=0.00021  Score=62.47  Aligned_cols=80  Identities=20%  Similarity=0.328  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |...   ..|..+..++.+.+.++.  -+++
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPI  102 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999988889999999999988776655443   3321   124444344444343322  1479


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus       103 d~lv~nAg  110 (279)
T 3sju_A          103 GILVNSAG  110 (279)
T ss_dssp             CEEEECCC
T ss_pred             cEEEECCC
Confidence            99999987

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.65  E-value=0.0002  Score=61.28  Aligned_cols=80  Identities=21%  Similarity=0.378  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+++++|+||+|++|.++++.+...|++|+++++++++.+.+.+++   +...   ..|..+..++.+.+.++.  .+++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            3689999999999999999988889999999999988776654333   4321   134444344444444432  3479


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        84 d~li~~Ag   91 (247)
T 3lyl_A           84 DILVNNAG   91 (247)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.64  E-value=0.00018  Score=62.97  Aligned_cols=80  Identities=25%  Similarity=0.318  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC---CC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG---YD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g---~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.+++.   ..   ...|..+..++.+.+.++.  -+++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGL   86 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999999999888777665552   22   1124444333333333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        87 D~lvnnAg   94 (280)
T 3tox_A           87 DTAFNNAG   94 (280)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.64  E-value=0.00026  Score=60.78  Aligned_cols=81  Identities=19%  Similarity=0.227  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +..   ...|..+..++.+.+.++.  -+++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGI   87 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999988876665443   321   1124444334433333322  1469


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+++.+.|.
T Consensus        88 d~li~~Ag~   96 (253)
T 3qiv_A           88 DYLVNNAAI   96 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999863

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.64  E-value=0.00039  Score=59.83  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      ++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |.. .  ..|..+..++.+.+.+..  -+++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            578999999999999999999999999999999887766554333   432 1  124444344444443321  24699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++++.|
T Consensus        82 ~lv~nAg   88 (256)
T 1geg_A           82 VIVNNAG   88 (256)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.64  E-value=0.00027  Score=61.04  Aligned_cols=80  Identities=14%  Similarity=0.292  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHH---HCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTK---YFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~---~~~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |..   ...|..+..++.+.+.+   ..+++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   87 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   87 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999988889999999999887766544333   332   11244443344433333   33257


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        88 id~lv~~Ag   96 (260)
T 2ae2_A           88 LNILVNNAG   96 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.64  E-value=0.00027  Score=61.48  Aligned_cols=80  Identities=23%  Similarity=0.376  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |...   ..|..+..++.+.+.++.  .+++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDV  104 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            4789999999999999999999999999999999888766654343   4321   124444344444443332  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus       105 D~lv~nAg  112 (271)
T 4ibo_A          105 DILVNNAG  112 (271)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.63  E-value=0.00015  Score=63.36  Aligned_cols=80  Identities=20%  Similarity=0.308  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |.. ..  .|..+..++.+.+.++.  -+++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  110 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGI  110 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999899999999999887766554333   322 11  24444344444444322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus       111 D~lvnnAg  118 (276)
T 3r1i_A          111 DIAVCNAG  118 (276)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.63  E-value=0.00059  Score=58.72  Aligned_cols=80  Identities=21%  Similarity=0.237  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++ ++++.+.+.+++   +.. .+  .|..+..++.+.+.++.  -++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999988889999999998 766655443232   332 11  24444334444333322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        86 id~li~~Ag   94 (261)
T 1gee_A           86 LDVMINNAG   94 (261)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.63  E-value=0.0002  Score=61.25  Aligned_cols=77  Identities=18%  Similarity=0.042  Sum_probs=56.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-e--CChHHHHHHHHHh-CCCceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-T--GSDDNVKLLKEEF-GYDDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~--~s~~~~~~~~~~~-g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      ++++||+|++|++|.++++.+...|++|+++ +  +++++.+.+.+++ +.+ +.|..+...+.+.+.+.. +++|++++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-g~iD~lv~   78 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTI-ALAEQKPERLVDATLQHG-EAIDTIVS   78 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCCGGGHHHHHGGGS-SCEEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHHHHc-CCCCEEEE
Confidence            4689999999999999999999999999999 5  8888877766565 322 334433344555554433 46999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        79 ~Ag   81 (244)
T 1zmo_A           79 NDY   81 (244)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            887

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.62  E-value=0.00026  Score=61.51  Aligned_cols=80  Identities=13%  Similarity=0.253  Sum_probs=55.5

Q ss_pred             CCCEEEEEcC--CChHHHHHHHHHHHCCCEEEEEeCChHH-HHHHHHHhCCC-ce--eecCChhhHHHHHHHH---CC--
Q 042784          164 SGSNVFVSAA--AGGVGMFAGQLAKLKGCKVVGSTGSDDN-VKLLKEEFGYD-DA--FNYNSEMSFDAALTKY---FP--  232 (356)
Q Consensus       164 ~g~~VlV~g~--~g~vG~~~i~la~~~G~~V~~~~~s~~~-~~~~~~~~g~~-~v--~~~~~~~~~~~~i~~~---~~--  232 (356)
                      .++++||+|+  +|++|.++++.+...|++|+++++++++ .+.+.++++.. ..  .|..+..++.+.+.++   .+  
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~   85 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG   85 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999998  8999999999998999999999987765 35554355532 11  3445433333333332   22  


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +++|+++++.|
T Consensus        86 ~~iD~lv~nAg   96 (269)
T 2h7i_A           86 NKLDGVVHSIG   96 (269)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCceEEEECCc
Confidence            27999999886

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.62  E-value=0.00038  Score=60.12  Aligned_cols=80  Identities=16%  Similarity=0.256  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |...   ..|..+..++.+.+.+..  -+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   85 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   85 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999999999999999987766554343   3321   124444344443333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++++.|
T Consensus        86 d~lv~nAg   93 (262)
T 1zem_A           86 DFLFNNAG   93 (262)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999886

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.61  E-value=0.00069  Score=58.78  Aligned_cols=104  Identities=16%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||++++|.++++.+...|++|++++++ .++.+.+.+   +.|...   ..|..+..++.+.+.+..  -++
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   96 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGH   96 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999987654 444443332   334431   124444344444443322  146


Q ss_pred             ceEEEECCchh--------------------------hHHHHHHhcccCCEEEEEeccc
Q 042784          235 IDVYLDNVGGK--------------------------MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       235 ~d~vld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +|+++.+.|..                          ..+.++..++.+|+++.++...
T Consensus        97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            99999988730                          1234556677789999988755

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.60  E-value=0.00028  Score=60.53  Aligned_cols=78  Identities=22%  Similarity=0.361  Sum_probs=58.3

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHCC--CCceEEEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYFP--NGIDVYLD  240 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~~--~~~d~vld  240 (356)
                      .+++|+||+|++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+..++.+.+.+...  +++|++++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            368999999999999999988899999999999888877765665321   1345554455555554432  47999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        81 nAg   83 (248)
T 3asu_A           81 NAG   83 (248)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            886

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.60  E-value=0.00016  Score=62.32  Aligned_cols=80  Identities=20%  Similarity=0.252  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|+++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +...   ..|..+..++.+.+.+..  -+++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   90 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKI   90 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999888888999999999988766654333   4321   124444334433333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        91 d~lv~nAg   98 (256)
T 3gaf_A           91 TVLVNNAG   98 (256)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.60  E-value=0.00031  Score=60.04  Aligned_cols=80  Identities=18%  Similarity=0.286  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+||+|++|.++++.+...|++|+++++ ++++.+.+.+++   +...   ..|..+..++.+.+.+..  -++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            3689999999999999999999899999999998 776655443232   4321   124444344444443322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        83 id~lv~nAg   91 (246)
T 2uvd_A           83 VDILVNNAG   91 (246)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.60  E-value=0.00017  Score=62.59  Aligned_cols=78  Identities=19%  Similarity=0.336  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---C-CCc----eeecCChhhHHHHHHHHCCCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---G-YDD----AFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g-~~~----v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   + ...    ..|..+...+.+.+.++  +++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY--PKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC--CCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc--CCC
Confidence            4789999999999999999998899999999999987765544332   1 111    12444433344333332  469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        87 d~lv~nAg   94 (267)
T 3t4x_A           87 DILINNLG   94 (267)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.60  E-value=0.00044  Score=58.99  Aligned_cols=80  Identities=26%  Similarity=0.456  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----hCCCc-e--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE----FGYDD-A--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+||+|++|..+++.+...|++|+++++++++.+.+.++    .+... .  .|..+..++.+.+.++.  -++
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG   85 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999998888999999999988776655433    34331 1  24444344444444322  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        86 ~d~vi~~Ag   94 (248)
T 2pnf_A           86 IDILVNNAG   94 (248)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.60  E-value=0.00021  Score=62.11  Aligned_cols=80  Identities=19%  Similarity=0.334  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.++   .|..   ...|..+..++.+.+.++.  -+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGAL  106 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999889999999999998876655433   3432   1234444344443333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus       107 D~lvnnAg  114 (270)
T 3ftp_A          107 NVLVNNAG  114 (270)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.60  E-value=0.00042  Score=60.23  Aligned_cols=80  Identities=14%  Similarity=0.192  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|.+++..+...|++|+++++++++.+.+.+++   |.. .+  .|..+..++.+.+.++.  -+++
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i  109 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV  109 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            4789999999999999999999899999999999887766544333   432 11  24444344444443321  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus       110 D~li~~Ag  117 (272)
T 1yb1_A          110 SILVNNAG  117 (272)
T ss_dssp             SEEEECCC
T ss_pred             cEEEECCC
Confidence            99999987

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.59  E-value=0.00012  Score=63.46  Aligned_cols=80  Identities=20%  Similarity=0.305  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----hCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE----FGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+|++|++|.++++.+...|++|+++++++++.+.+.++    .+...   ..|..+..++.+.+.++.  -++
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   98 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGG   98 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999998876655433    34331   124444333333333322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        99 id~lv~nAg  107 (266)
T 4egf_A           99 LDVLVNNAG  107 (266)
T ss_dssp             CSEEEEECC
T ss_pred             CCEEEECCC
Confidence            999999887

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.59  E-value=0.00023  Score=61.35  Aligned_cols=78  Identities=22%  Similarity=0.249  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHC--CCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++ +.+.++++. ..+  |..+..++.+.+.+..  -+++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            47899999999999999999998999999999988777 444435542 232  4444344444443321  14699999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      ++.|
T Consensus        83 ~~Ag   86 (256)
T 2d1y_A           83 NNAA   86 (256)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9987

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.59  E-value=0.00046  Score=60.57  Aligned_cols=77  Identities=21%  Similarity=0.194  Sum_probs=55.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCC-ceeecCChhhHHHHHHHHCCCCceE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYD-DAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      -.|.+++|+|++|++|.+++..+...|++|++++++.++.+.+.+++    +.. ...|..+..++.+.+     ..+|+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~-----~~~Dv  191 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV-----KGAHF  191 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT-----TTCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHH-----HhCCE
Confidence            36899999999999999999999999999999999888776554343    322 223554422332222     23899


Q ss_pred             EEECCch
Q 042784          238 YLDNVGG  244 (356)
Q Consensus       238 vld~~g~  244 (356)
                      +++|+|.
T Consensus       192 lVn~ag~  198 (287)
T 1lu9_A          192 VFTAGAI  198 (287)
T ss_dssp             EEECCCT
T ss_pred             EEECCCc
Confidence            9999973

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.59  E-value=0.00039  Score=60.66  Aligned_cols=80  Identities=16%  Similarity=0.272  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++.++.+.+.+++    |...   ..|..+..++.+.+.++.  -++
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~  105 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGR  105 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999899999999999987765543332    4331   124454344444343322  147


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       106 id~lv~nAg  114 (277)
T 4fc7_A          106 IDILINCAA  114 (277)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999988

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.58  E-value=0.00032  Score=61.15  Aligned_cols=81  Identities=15%  Similarity=0.300  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC---C---ceeecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY---D---DAFNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~---~---~v~~~~~~~~~~~~i~~~~--~  232 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   ..   .   ...|..+..++.+.+.+..  -
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   84 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999988889999999999988877665454   21   1   1134444344444343322  1


Q ss_pred             CCceEEEECCch
Q 042784          233 NGIDVYLDNVGG  244 (356)
Q Consensus       233 ~~~d~vld~~g~  244 (356)
                      +++|+++++.|.
T Consensus        85 g~id~lv~~Ag~   96 (278)
T 1spx_A           85 GKLDILVNNAGA   96 (278)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEEEECCCC
Confidence            469999999873

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.58  E-value=0.00029  Score=60.85  Aligned_cols=80  Identities=15%  Similarity=0.265  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-HHHHHHHh----CCCc-e--eecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-VKLLKEEF----GYDD-A--FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-~~~~~~~~----g~~~-v--~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++ .+.+.+++    |... .  .|..+..++.+.+.+..  -+
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999998999999999988776 55443333    4331 1  24444344444443322  14


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+++++.|
T Consensus        83 ~iD~lv~~Ag   92 (260)
T 1x1t_A           83 RIDILVNNAG   92 (260)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.58  E-value=0.00025  Score=61.43  Aligned_cols=80  Identities=14%  Similarity=0.171  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----hCCCce----eecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE----FGYDDA----FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~----~g~~~v----~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .++++||+|+++++|.++++.+...|++|+++++++++.+.+.++    .+...+    .|..+..++.+.+.++.  -+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999999999999999999999998876655433    332212    24444333333333322  14


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+++.+.|
T Consensus        87 ~id~lvnnAg   96 (265)
T 3lf2_A           87 CASILVNNAG   96 (265)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.58  E-value=0.00087  Score=51.88  Aligned_cols=93  Identities=16%  Similarity=0.109  Sum_probs=66.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee-ecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF-NYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~-~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .++|+|.|+ |.+|...++.++..|.+|+++++++++.+.++ +.|...+. |..+ .+   .+.+..-.++|+++-+++
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~-~~g~~~i~gd~~~-~~---~l~~a~i~~ad~vi~~~~   80 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELR-ERGVRAVLGNAAN-EE---IMQLAHLECAKWLILTIP   80 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HTTCEEEESCTTS-HH---HHHHTTGGGCSEEEECCS
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HcCCCEEECCCCC-HH---HHHhcCcccCCEEEEECC
Confidence            478999997 99999999999999999999999999999998 67775332 2222 22   233322246999999998


Q ss_pred             hhh----HHHHHHhcccCCEEEEE
Q 042784          244 GKM----LEAVLNHVNVHARIILC  263 (356)
Q Consensus       244 ~~~----~~~~~~~l~~~G~~v~~  263 (356)
                      .+.    .....+.+.+..+++..
T Consensus        81 ~~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           81 NGYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             CHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             ChHHHHHHHHHHHHHCCCCeEEEE
Confidence            752    22344556666666643

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.58  E-value=0.00034  Score=60.73  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|++++ +++++.+.+.+   ..|...   ..|..+..++.+.+.++.  -++
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  105 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGG  105 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999988888899998874 44444444332   334321   124454344444333322  147


Q ss_pred             ceEEEECCchh--------------------------hHHHHHHhcccCCEEEEEeccc
Q 042784          235 IDVYLDNVGGK--------------------------MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       235 ~d~vld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +|+++.+.|..                          ..+.++..++.+|+++.++...
T Consensus       106 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~  164 (267)
T 3u5t_A          106 VDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQ  164 (267)
T ss_dssp             EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChh
Confidence            99999998720                          1234445566779999887644

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.57  E-value=0.00043  Score=60.18  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ce--eecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DA--FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v--~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .+.++||+||+|++|.++++.+...|++|++++++.++.+.+.++++..   .+  .|..+..++.+.+.++.  -+++|
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   94 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   94 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4789999999999999999988889999999998887766555455431   11  24444344444333321  14699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      ++|.+.|
T Consensus        95 ~li~~Ag  101 (278)
T 2bgk_A           95 IMFGNVG  101 (278)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999886

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.57  E-value=0.00041  Score=59.47  Aligned_cols=79  Identities=11%  Similarity=0.186  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHH-HHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVK-LLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~-~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++ ++.+ .++ +.|...   ..|..+..++.+.+.+..  -+++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR-NLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHH-hcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999999999989999999999887 6554 333 555431   134444344444333321  14699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++++.|
T Consensus        85 ~lv~nAg   91 (249)
T 2ew8_A           85 ILVNNAG   91 (249)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.56  E-value=0.00016  Score=61.37  Aligned_cols=79  Identities=18%  Similarity=0.220  Sum_probs=55.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----hCCCce---eecCChhhHHHHHHHHC--CCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE----FGYDDA---FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~----~g~~~v---~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      ++++||+||+|++|.+.++.+...|++|++++++.++.+.+.++    .+....   .|..+..++.+.+.++.  -+++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV   81 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            67899999999999999999999999999999998876655433    343311   24444333333332221  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        82 d~li~~Ag   89 (235)
T 3l77_A           82 DVVVANAG   89 (235)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCc
Confidence            99999987

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.56  E-value=0.00041  Score=59.84  Aligned_cols=80  Identities=18%  Similarity=0.283  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +...   ..|..+..++.+.+.+..  -+++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   92 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV   92 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999899999999999887765543232   4321   124444333433333321  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++++.|
T Consensus        93 D~lv~~Ag  100 (260)
T 2zat_A           93 DILVSNAA  100 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.56  E-value=0.00042  Score=59.75  Aligned_cols=80  Identities=18%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC---CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF---PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~---~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   |.. .  ..|..+..++.+.+.+..   .+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999899999999999888766554333   432 1  124444344444444331   356


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        84 id~lvnnAg   92 (260)
T 2qq5_A           84 LDVLVNNAY   92 (260)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            999999984

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.56  E-value=0.00061  Score=58.93  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCCh---HHHHHHHHHhCCCcee--ecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSD---DNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~---~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+  |++|.++++.+...|++|+++++++   +..+.+.++.+....+  |..+..++.+.+.+..  -++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            47899999998  9999999998888999999999876   3344444344433333  5555444444444432  247


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        88 iD~lv~~Ag   96 (265)
T 1qsg_A           88 FDGFVHSIG   96 (265)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.56  E-value=0.00027  Score=61.79  Aligned_cols=80  Identities=20%  Similarity=0.329  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC---C-c--eeecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY---D-D--AFNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~---~-~--v~~~~~~~~~~~~i~~~~--~  232 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +.   . .  ..|..+..++.+.+.+..  -
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999999998889999999999988776654343   22   1 1  124444334443333321  1


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +++|+++++.|
T Consensus        85 g~iD~lv~nAg   95 (280)
T 1xkq_A           85 GKIDVLVNNAG   95 (280)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46999999887

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.55  E-value=0.00029  Score=59.54  Aligned_cols=77  Identities=13%  Similarity=0.155  Sum_probs=56.5

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +++||+||+|++|.+++..+...|++|+++++++++.+.+.++++...   ..|..+..++.+.+.++. ..+|+++.+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~-~~~d~lv~~A   80 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLD-SIPSTVVHSA   80 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCS-SCCSEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHh-hcCCEEEEeC
Confidence            469999999999999999999999999999999998888775664421   234444344444444432 3359999998


Q ss_pred             c
Q 042784          243 G  243 (356)
Q Consensus       243 g  243 (356)
                      |
T Consensus        81 g   81 (230)
T 3guy_A           81 G   81 (230)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.55  E-value=0.00066  Score=59.84  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+||+|++|.+++..+...|++|+++++++++.+.+.+++    +...   ..|..+..++.+.+.+..  -+.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  104 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999889999999999987766544333    4321   124444344444443321  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus       105 id~li~~Ag  113 (302)
T 1w6u_A          105 PNIVINNAA  113 (302)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.55  E-value=0.00043  Score=59.58  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+..++.+.+.++.  .+++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999988889999999999887665443232   432 1  124444344444443321  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        92 d~vi~~Ag   99 (260)
T 3awd_A           92 DILVACAG   99 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999886

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.55  E-value=0.0002  Score=66.81  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -.|++++|+|+ |++|.++++.++..|++|+++++++.+...+. ..|.+ +.+.   .+   .     -..+|+++++.
T Consensus       263 L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa-~~g~d-v~~l---ee---~-----~~~aDvVi~at  328 (488)
T 3ond_A          263 IAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEIDPICALQAT-MEGLQ-VLTL---ED---V-----VSEADIFVTTT  328 (488)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-ECCG---GG---T-----TTTCSEEEECS
T ss_pred             ccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HhCCc-cCCH---HH---H-----HHhcCEEEeCC
Confidence            47999999997 89999999999999999999998888877776 55643 2211   11   1     13589999999


Q ss_pred             chh--hHHHHHHhcccCCEEEEEecc
Q 042784          243 GGK--MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       243 g~~--~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      |..  .-...++.+++++.++.+|..
T Consensus       329 G~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          329 GNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             SCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             CChhhhhHHHHHhcCCCeEEEEcCCC
Confidence            874  334578899999999988864

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.54  E-value=0.00039  Score=60.49  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHHh----CCCc-e--eecCCh----hhHHHHHHHHC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEEF----GYDD-A--FNYNSE----MSFDAALTKYF  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~~----g~~~-v--~~~~~~----~~~~~~i~~~~  231 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++ ++++.+.+.+++    |... .  .|..+.    .++.+.+.+..
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            4689999999999999999998889999999998 877766554343    4321 1  244443    33333333221


Q ss_pred             --CCCceEEEECCc
Q 042784          232 --PNGIDVYLDNVG  243 (356)
Q Consensus       232 --~~~~d~vld~~g  243 (356)
                        -+++|++|++.|
T Consensus        90 ~~~g~id~lv~nAg  103 (276)
T 1mxh_A           90 RAFGRCDVLVNNAS  103 (276)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence              146999999987

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.54  E-value=0.0001  Score=64.00  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .++++||+||+|++|.++++.+...|++|++++++.++.+.+. .-... ...|..+..++.+.+.+..  -+++|+++.
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn   93 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN-LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN   93 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC-CTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh-cCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            4689999999999999999999999999999999887765433 11111 1234444344444333322  147999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        94 nAg   96 (266)
T 3p19_A           94 NAG   96 (266)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            988

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.54  E-value=0.0012  Score=58.16  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHH---HhCCCce---eecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD--DNVKLLKE---EFGYDDA---FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~--~~~~~~~~---~~g~~~v---~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++.  ++.+.+.+   +.|....   .|..+..++.+.+.++.  -+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  127 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG  127 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999999999999999999988652  23333221   3454311   24444333333333322  14


Q ss_pred             CceEEEECCchh---------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          234 GIDVYLDNVGGK---------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       234 ~~d~vld~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ++|+++.+.|..                           ..+.++..++.+|+++.++....
T Consensus       128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~  189 (294)
T 3r3s_A          128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQA  189 (294)
T ss_dssp             CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGG
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhh
Confidence            699999988730                           11233445667899999887554

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.54  E-value=0.00026  Score=60.06  Aligned_cols=99  Identities=21%  Similarity=0.255  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+.+|||+||+|++|..+++.+...|++|+++++++++.+.+. ..+...++..+    +.+.+.+.. +++|+||.+.|
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~-~~~~~~~~~~D----l~~~~~~~~-~~~D~vi~~ag   93 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELR-ERGASDIVVAN----LEEDFSHAF-ASIDAVVFAAG   93 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HTTCSEEEECC----TTSCCGGGG-TTCSEEEECCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHH-hCCCceEEEcc----cHHHHHHHH-cCCCEEEECCC
Confidence            4789999999999999999999899999999999999888776 55551233222    112233322 36999999988


Q ss_pred             hh--------------hHHHHHHhcc--cCCEEEEEecccc
Q 042784          244 GK--------------MLEAVLNHVN--VHARIILCGMISQ  268 (356)
Q Consensus       244 ~~--------------~~~~~~~~l~--~~G~~v~~g~~~~  268 (356)
                      ..              ....+++.++  ..++++.++....
T Consensus        94 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           94 SGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             CCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             CCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            41              1122333332  2378998877544

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.53  E-value=0.00059  Score=58.22  Aligned_cols=80  Identities=19%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC--Ccee--ec--CChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY--DDAF--NY--NSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~--~~v~--~~--~~~~~~~~~i~~~~--~  232 (356)
                      .+++++|+||+|++|.++++.+...|++|+++++++++.+.+.+++   +.  ..++  |.  .+..++.+.+.++.  -
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~   92 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEF   92 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999999988776655333   21  1122  22  33233333333221  1


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +++|+++.+.|
T Consensus        93 g~id~lv~nAg  103 (247)
T 3i1j_A           93 GRLDGLLHNAS  103 (247)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            46999999887

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.52  E-value=0.00042  Score=57.89  Aligned_cols=90  Identities=16%  Similarity=0.232  Sum_probs=62.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|||+||+|.+|..+++.+...|.+|+++++++++.+.+.  -+.. ++  |..+ .+. +   .+  .++|+||.++|.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~-~~~~D~~d-~~~-~---~~--~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDIN-ILQKDIFD-LTL-S---DL--SDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSE-EEECCGGG-CCH-H---HH--TTCSEEEECCCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCe-EEeccccC-hhh-h---hh--cCCCEEEECCcC
Confidence            6999999999999999999999999999999988766543  1322 22  3332 111 2   22  469999999985


Q ss_pred             h---------hHHHHHHhcccC--CEEEEEecc
Q 042784          245 K---------MLEAVLNHVNVH--ARIILCGMI  266 (356)
Q Consensus       245 ~---------~~~~~~~~l~~~--G~~v~~g~~  266 (356)
                      .         ....+++.++..  ++++.++..
T Consensus        72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           72 SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             STTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            2         234555555543  688887654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.52  E-value=0.0001  Score=62.62  Aligned_cols=97  Identities=14%  Similarity=0.119  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      ..+|||+||+|++|.++++.+...| ++|+++++++++.+.+. ..+.. ...|..+..++.+.+     .++|+||.+.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~-----~~~D~vv~~a   96 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-PTNSQIIMGDVLNHAALKQAM-----QGQDIVYANL   96 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-CTTEEEEECCTTCHHHHHHHH-----TTCSEEEEEC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-cCCcEEEEecCCCHHHHHHHh-----cCCCEEEEcC
Confidence            4689999999999999999999999 79999998887654332 11221 112444433344333     3589999988


Q ss_pred             chh----hHHHHHHhcccC--CEEEEEeccc
Q 042784          243 GGK----MLEAVLNHVNVH--ARIILCGMIS  267 (356)
Q Consensus       243 g~~----~~~~~~~~l~~~--G~~v~~g~~~  267 (356)
                      |..    ..+.+++.++..  +++|.++...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           97 TGEDLDIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence            864    234455555433  6888887644

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.52  E-value=0.0001  Score=63.53  Aligned_cols=95  Identities=19%  Similarity=0.254  Sum_probs=60.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +++||+||+|++|.++++.+...|++|+++++++++.+.       ....|..+..++.+.+.++ .+++|+++++.|..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-------~~~~Dl~~~~~v~~~~~~~-~~~id~lv~~Ag~~   73 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-------DLSTAEGRKQAIADVLAKC-SKGMDGLVLCAGLG   73 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------CTTSHHHHHHHHHHHHTTC-TTCCSEEEECCCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-------ccccCCCCHHHHHHHHHHh-CCCCCEEEECCCCC
Confidence            479999999999999999998899999999987654221       1112222212233333322 25689999998742


Q ss_pred             h-------------------HHHHHHhcccC--CEEEEEecccc
Q 042784          246 M-------------------LEAVLNHVNVH--ARIILCGMISQ  268 (356)
Q Consensus       246 ~-------------------~~~~~~~l~~~--G~~v~~g~~~~  268 (356)
                      .                   .+.++..++..  |+++.++....
T Consensus        74 ~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  117 (257)
T 1fjh_A           74 PQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVAS  117 (257)
T ss_dssp             TTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred             CCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhh
Confidence            1                   23344444333  89999887654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.51  E-value=0.00058  Score=59.79  Aligned_cols=80  Identities=16%  Similarity=0.336  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +...   ..|..+..++.+.+.++.  -+++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i  122 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV  122 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            3689999999999999999988888999999888877766544333   4321   134444344444443322  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus       123 d~li~~Ag  130 (285)
T 2c07_A          123 DILVNNAG  130 (285)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.51  E-value=0.00049  Score=60.24  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCce----eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDA----FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v----~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.++   .|...+    .|..+..++.+.+.++.  .++
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  106 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG  106 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            378999999999999999998888999999999998877655422   343211    24444333333333321  147


Q ss_pred             ceEEEEC
Q 042784          235 IDVYLDN  241 (356)
Q Consensus       235 ~d~vld~  241 (356)
                      +|++|.+
T Consensus       107 iD~li~n  113 (286)
T 1xu9_A          107 LDMLILN  113 (286)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9999998

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.51  E-value=0.00031  Score=60.33  Aligned_cols=99  Identities=14%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC--CCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF--PNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~--~~~~d~vld~  241 (356)
                      -++++||+||+|++|.++++.+...|++|+++++++++.+..      ...+|..+..++.+.+.++.  .+++|+++.+
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~------~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH------SFTIKDSGEEEIKSVIEKINSKSIKVDTFVCA   94 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSE------EEECSCSSHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccc------ceEEEeCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            368999999999999999999999999999999876543211      11233444344444444432  2479999999


Q ss_pred             Cch--------h-------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          242 VGG--------K-------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       242 ~g~--------~-------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      .|.        +                   ..+.+...++.+|+++.++....
T Consensus        95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  148 (251)
T 3orf_A           95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAA  148 (251)
T ss_dssp             CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhh
Confidence            882        0                   12334455666789998877554

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.50  E-value=0.00041  Score=60.04  Aligned_cols=80  Identities=30%  Similarity=0.452  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCC-hHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc----eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAG-GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD----AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g-~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~----v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .++++||+||+| ++|.++++.+...|++|++++++.++.+.+.+++   +...    ..|..+..++.+.+.++.  -+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            478999999986 8999999988889999999999988776665444   2111    124444344444333322  14


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      .+|++|.+.|
T Consensus       101 ~id~li~~Ag  110 (266)
T 3o38_A          101 RLDVLVNNAG  110 (266)
T ss_dssp             CCCEEEECCC
T ss_pred             CCcEEEECCC
Confidence            6999999988

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.50  E-value=0.00041  Score=59.28  Aligned_cols=79  Identities=19%  Similarity=0.207  Sum_probs=55.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCC-c--eeecCChhhHHHHHHHHC--CCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYD-D--AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~-~--v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      +.++||+||+|++|.+++..+...|++|+++++++++.+.+.+++    +.. .  ..|..+..++.+.+.++.  -+++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999988889999999999988776665444    221 1  124444344444443322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        82 d~li~~Ag   89 (250)
T 2cfc_A           82 DVLVNNAG   89 (250)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999886

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.50  E-value=0.00031  Score=60.08  Aligned_cols=77  Identities=19%  Similarity=0.349  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc--eeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD--AFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~--v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+. ++....  ..|..+..++. .+.+.. +++|+++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~-~~~~~~-~~id~lv~~   81 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKKKQID-QFANEV-ERLDVLFNV   81 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHH-HHHHHC-SCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHH-HHHHHh-CCCCEEEEC
Confidence            4789999999999999999999899999999999887766554 432111  23444433343 332222 469999999


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        82 Ag   83 (246)
T 2ag5_A           82 AG   83 (246)
T ss_dssp             CC
T ss_pred             Cc
Confidence            87

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.50  E-value=0.00058  Score=58.70  Aligned_cols=77  Identities=18%  Similarity=0.050  Sum_probs=52.6

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH--HhCCCce-eecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE--EFGYDDA-FNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~--~~g~~~v-~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +++||+|++|++|.++++.+...|++|+++++++++.+.+.+  ..|.... +|..+...+.+.+.+.. +++|+++++.
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~-g~iD~lv~nA   80 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAY-GQVDVLVSND   80 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHH-SCCCEEEEEC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHh-CCCCEEEECC
Confidence            479999999999999999999999999999988776555431  2344321 23332233333333322 4699999987


Q ss_pred             c
Q 042784          243 G  243 (356)
Q Consensus       243 g  243 (356)
                      |
T Consensus        81 g   81 (254)
T 1zmt_A           81 I   81 (254)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.49  E-value=6.6e-05  Score=63.88  Aligned_cols=100  Identities=17%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHH---HHHHHCC-CCceEEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDA---ALTKYFP-NGIDVYLD  240 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~---~i~~~~~-~~~d~vld  240 (356)
                      +.++||+||+|++|.++++.+...|++|+++++++++.+.   .. .....|..+..++.+   .+.+..+ +++|+++.
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---~~-~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~   78 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD---SN-ILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFC   78 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS---EE-EECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccccc---cc-EEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            5789999999999999999999999999999987654320   00 000122222223332   2322222 57999999


Q ss_pred             CCch--------h----h---------------HHHHHHhcccCCEEEEEecccc
Q 042784          241 NVGG--------K----M---------------LEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       241 ~~g~--------~----~---------------~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +.|.        +    .               .+.+...++.+|+++.++....
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  133 (236)
T 1ooe_A           79 VAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAA  133 (236)
T ss_dssp             CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             CCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhh
Confidence            9882        1    1               2234445556789998876544

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.49  E-value=0.00056  Score=59.60  Aligned_cols=78  Identities=12%  Similarity=0.148  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc-e--eecCChhh---HHHHHHHHCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD-A--FNYNSEMS---FDAALTKYFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~-v--~~~~~~~~---~~~~i~~~~~~~  234 (356)
                      .|+++||+||++++|.++++.+...|++|+++++++++.+.+.+++   +... .  .|..+..+   +.+.+.+.  ++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~--g~  109 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI--AP  109 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH--SC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh--CC
Confidence            4789999999999999999999999999999998877655544333   4321 1  23333223   33344443  57


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       110 iD~lvnnAg  118 (275)
T 4imr_A          110 VDILVINAS  118 (275)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999988

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.48  E-value=0.00055  Score=59.84  Aligned_cols=80  Identities=13%  Similarity=0.233  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHHh----CCCce---eecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEEF----GYDDA---FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~~----g~~~v---~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .++++||+||+|++|.++++.+...|++|+++++ +.++.+.+.+++    +....   .|..+..++.+.+.++.  -+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  103 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG  103 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence            4789999999999999999999999999999997 555554443333    22211   24444344444343322  24


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+++.+.|
T Consensus       104 ~iD~lv~nAg  113 (281)
T 3v2h_A          104 GADILVNNAG  113 (281)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.48  E-value=0.00031  Score=60.20  Aligned_cols=80  Identities=21%  Similarity=0.281  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|..+++.+...|++|+++++++++.+.+.+++   +...   ..|..+..++.+.+.++.  -+++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   89 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4789999999999999999988889999999999887765543332   4321   124444334444333321  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        90 d~vi~~Ag   97 (255)
T 1fmc_A           90 DILVNNAG   97 (255)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.48  E-value=0.00011  Score=62.80  Aligned_cols=77  Identities=14%  Similarity=0.069  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHH---HHCC-CCceEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALT---KYFP-NGIDVY  238 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~---~~~~-~~~d~v  238 (356)
                      ..+.++||+|++|++|.++++.+...|++|+++++++++.+.   .. .....|..+..++.+.+.   +..+ +++|++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~-~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~l   80 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS---AS-VIVKMTDSFTEQADQVTAEVGKLLGDQKVDAI   80 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS---EE-EECCCCSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccC---Cc-EEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence            457899999999999999999998899999999987654320   00 001123333233333333   2222 579999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        81 v~~Ag   85 (241)
T 1dhr_A           81 LCVAG   85 (241)
T ss_dssp             EECCC
T ss_pred             EEccc
Confidence            99987

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.47  E-value=0.00053  Score=59.13  Aligned_cols=80  Identities=14%  Similarity=0.092  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC----------C-Cce--eecCChhhHHHHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG----------Y-DDA--FNYNSEMSFDAALTKY  230 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g----------~-~~v--~~~~~~~~~~~~i~~~  230 (356)
                      .+.++||+||+|++|..+++.+...|++|+++++++++.+.+.+++.          . ...  .|..+..++.+.+.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            46899999999999999999888899999999999887766543332          1 112  2444433444433332


Q ss_pred             C--CCCc-eEEEECCc
Q 042784          231 F--PNGI-DVYLDNVG  243 (356)
Q Consensus       231 ~--~~~~-d~vld~~g  243 (356)
                      .  -+++ |++|.+.|
T Consensus        86 ~~~~g~i~d~vi~~Ag  101 (264)
T 2pd6_A           86 QACFSRPPSVVVSCAG  101 (264)
T ss_dssp             HHHHSSCCSEEEECCC
T ss_pred             HHHhCCCCeEEEECCC
Confidence            1  1356 99999987

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.47  E-value=0.00044  Score=60.18  Aligned_cols=78  Identities=17%  Similarity=0.257  Sum_probs=57.6

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC--C-c--eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY--D-D--AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~--~-~--v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      +++||+||+|++|.++++.+...|++|+++++++++.+.+.+++..  . .  ..|..+..++.+.+.+..  -+++|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            7899999999999999999989999999999998887776645542  1 1  124455444555554432  1468999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus       102 vnnAG  106 (272)
T 2nwq_A          102 INNAG  106 (272)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99886

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.46  E-value=0.00073  Score=59.59  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--------CCC-ce--eecCChhhHHHHHHHHC-
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF--------GYD-DA--FNYNSEMSFDAALTKYF-  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~--------g~~-~v--~~~~~~~~~~~~i~~~~-  231 (356)
                      .+.++||+||+|++|.++++.+...|++|++++++.++.+.+.+++        +.. ..  .|..+..++.+.+.++. 
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   96 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   96 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999988889999999999987766554333        222 11  24444334443333321 


Q ss_pred             -CCCceEEEECCc
Q 042784          232 -PNGIDVYLDNVG  243 (356)
Q Consensus       232 -~~~~d~vld~~g  243 (356)
                       -+++|++|.+.|
T Consensus        97 ~~g~id~li~~Ag  109 (303)
T 1yxm_A           97 TFGKINFLVNNGG  109 (303)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence             146999999987

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.46  E-value=0.00092  Score=58.48  Aligned_cols=80  Identities=10%  Similarity=0.169  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSDD---NVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|.++||+||+  |++|.++++.+...|++|++++++++   ..+.+.++.+....  .|..+..++.+.+.++.  -++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999998  89999999988889999999998775   33444423443222  24444344443333322  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       100 iD~lv~~Ag  108 (285)
T 2p91_A          100 LDIIVHSIA  108 (285)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999986

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.45  E-value=0.0006  Score=59.51  Aligned_cols=81  Identities=16%  Similarity=0.247  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-------------ChHHHHHHHHH---hCCCc---eeecCChhhH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-------------SDDNVKLLKEE---FGYDD---AFNYNSEMSF  223 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-------------s~~~~~~~~~~---~g~~~---v~~~~~~~~~  223 (356)
                      -.|+++||+||+|++|.++++.+...|++|+++++             ++++.+.+.+.   .|...   ..|..+..++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            35889999999999999999999999999999987             55555554433   23321   1344443444


Q ss_pred             HHHHHHHC--CCCceEEEECCc
Q 042784          224 DAALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       224 ~~~i~~~~--~~~~d~vld~~g  243 (356)
                      .+.+.+..  -+++|+++.+.|
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            44333321  146999999987

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.45  E-value=0.00048  Score=59.38  Aligned_cols=80  Identities=19%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|+++ .+++++.+.+.+++   |...   ..|..+..++.+.+.++.  -++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999886 77777666554333   3321   124444334444333322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        83 id~lv~nAg   91 (258)
T 3oid_A           83 LDVFVNNAA   91 (258)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.45  E-value=0.00062  Score=58.65  Aligned_cols=80  Identities=20%  Similarity=0.296  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHH---CCCEEEEEeCChHHHHHHHHHh-----CCC-c--eeecCChhhHHHHHHHH--
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKL---KGCKVVGSTGSDDNVKLLKEEF-----GYD-D--AFNYNSEMSFDAALTKY--  230 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~---~G~~V~~~~~s~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~i~~~--  230 (356)
                      .+.++||+|++|++|.++++.+..   .|++|+++++++++.+.+.+++     +.. .  ..|..+..++.+.+.++  
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            367899999999999998887776   8999999999988776655343     322 1  13445434444444443  


Q ss_pred             --CCCCce--EEEECCc
Q 042784          231 --FPNGID--VYLDNVG  243 (356)
Q Consensus       231 --~~~~~d--~vld~~g  243 (356)
                        ..+.+|  +++++.|
T Consensus        85 ~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             ccccccCCccEEEECCc
Confidence              224577  9999876

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.45  E-value=0.00059  Score=58.08  Aligned_cols=79  Identities=16%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHHH---hCCCce----eecCChhhHHHHHHHHC--CCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKEE---FGYDDA----FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~~---~g~~~v----~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      +++++|+||+|++|..+++.+...|++|+++ ++++++.+.+.++   .+....    .|..+..++.+.+.++.  -++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999888899999998 7777766554323   243211    24444334433333321  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        81 ~d~li~~Ag   89 (245)
T 2ph3_A           81 LDTLVNNAG   89 (245)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.44  E-value=0.00063  Score=58.56  Aligned_cols=79  Identities=16%  Similarity=0.255  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH--HHHHHHHh---CCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN--VKLLKEEF---GYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~--~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      ++++||+|++|++|.++++.+...|++|+++++++++  .+.+.+++   +...   ..|..+..++.+.+.+..  -++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999998888889999999988766  44443233   3321   124444344443333321  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        82 iD~lv~nAg   90 (258)
T 3a28_C           82 FDVLVNNAG   90 (258)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.44  E-value=0.00084  Score=56.20  Aligned_cols=92  Identities=11%  Similarity=0.041  Sum_probs=62.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +|||+||+|.+|..+++.+...|.+|+++++++++...+. ..+... ..|..+...  +   .+  +++|+||.++|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~~D~~d~~~--~---~~--~~~d~vi~~ag~~   73 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL-GATVATLVKEPLVLTE--A---DL--DSVDAVVDALSVP   73 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT-CTTSEEEECCGGGCCH--H---HH--TTCSEEEECCCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc-CCCceEEecccccccH--h---hc--ccCCEEEECCccC
Confidence            5999999999999999999889999999999988776554 223321 123332112  2   22  4699999999751


Q ss_pred             -----------hHHHHHHhcc-cCCEEEEEecc
Q 042784          246 -----------MLEAVLNHVN-VHARIILCGMI  266 (356)
Q Consensus       246 -----------~~~~~~~~l~-~~G~~v~~g~~  266 (356)
                                 ....+++.++ .+++++.++..
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             TTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence                       2334455543 34788888653

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.43  E-value=0.0008  Score=58.05  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSDD---NVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+  |++|.++++.+...|++|++++++++   ..+.+.++.+....  .|..+..++.+.+.+..  -++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999998  99999999888888999999998875   34444434443222  24444344444333322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        87 iD~lv~~Ag   95 (261)
T 2wyu_A           87 LDYLVHAIA   95 (261)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.43  E-value=0.0012  Score=54.78  Aligned_cols=101  Identities=14%  Similarity=0.213  Sum_probs=70.0

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC-ceeecCChhhHHHHHHHHCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD-DAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ....+.++++||-.|+ |. |..++.+++. +.+|++++.+++..+.+++.   +|.. .+--..  .+..+.+..  ..
T Consensus        49 ~~l~~~~~~~vLDlGc-G~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~--~d~~~~~~~--~~  121 (204)
T 3njr_A           49 AALAPRRGELLWDIGG-GS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQ--GTAPAALAD--LP  121 (204)
T ss_dssp             HHHCCCTTCEEEEETC-TT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE--SCTTGGGTT--SC
T ss_pred             HhcCCCCCCEEEEecC-CC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEe--Cchhhhccc--CC
Confidence            3456789999999995 54 8889999988 88999999999988887643   3544 221111  112111111  13


Q ss_pred             CceEEEECCch--hhHHHHHHhcccCCEEEEEec
Q 042784          234 GIDVYLDNVGG--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       234 ~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .+|+|+...+.  ..+..+.+.|+++|+++....
T Consensus       122 ~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          122 LPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             CCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCEEEECCcccHHHHHHHHHhcCCCcEEEEEec
Confidence            69999976543  267888999999999987644

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.42  E-value=0.00089  Score=57.82  Aligned_cols=80  Identities=13%  Similarity=0.236  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCc---eeecCChhhHHHHHHH---HCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDD---AFNYNSEMSFDAALTK---YFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~i~~---~~~~~  234 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +...   ..|..+..++.+.+.+   ..+++
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   92 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   92 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999889999999999887766544332   3321   1244443333333332   22357


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        93 id~li~~Ag  101 (266)
T 1xq1_A           93 LDILINNLG  101 (266)
T ss_dssp             CSEEEEECC
T ss_pred             CcEEEECCC
Confidence            999999887

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.42  E-value=0.00043  Score=60.13  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|+++++ +.++.+.+.+   ..|...   ..|..+..++.+.+.++.  -++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~  106 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGR  106 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999887 5555444332   234321   124444334443333322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       107 id~lv~nAg  115 (269)
T 4dmm_A          107 LDVLVNNAG  115 (269)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.42  E-value=0.00071  Score=59.21  Aligned_cols=80  Identities=16%  Similarity=0.204  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC----------------hHHHHHHHHHh---CCCc---eeecCChh
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS----------------DDNVKLLKEEF---GYDD---AFNYNSEM  221 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s----------------~~~~~~~~~~~---g~~~---v~~~~~~~  221 (356)
                      .|+++||+||++++|.++++.+...|++|++++++                +++.+.+.+++   +...   ..|..+..
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   89 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD   89 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence            57899999999999999999999999999999876                55555443232   3321   12444434


Q ss_pred             hHHHHHHHHC--CCCceEEEECCc
Q 042784          222 SFDAALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       222 ~~~~~i~~~~--~~~~d~vld~~g  243 (356)
                      ++.+.+.++.  -+++|+++.+.|
T Consensus        90 ~v~~~~~~~~~~~g~id~lv~nAg  113 (286)
T 3uve_A           90 ALKAAVDSGVEQLGRLDIIVANAG  113 (286)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCc
Confidence            4444333322  146999999987

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.0006  Score=59.81  Aligned_cols=80  Identities=14%  Similarity=0.233  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHh-----CCC---ceeecCChhhHHHHHHHHCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC---KVVGSTGSDDNVKLLKEEF-----GYD---DAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~---~V~~~~~s~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~i~~~~~  232 (356)
                      .|+++||+||+|++|.++++.+...|+   +|+.++++.++.+.+.+++     +..   ...|..+..++.+.+.++..
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            378999999999999998877766666   9999999988877665443     321   12355554556655555432


Q ss_pred             --CCceEEEECCc
Q 042784          233 --NGIDVYLDNVG  243 (356)
Q Consensus       233 --~~~d~vld~~g  243 (356)
                        +++|+++.+.|
T Consensus       112 ~~g~iD~lVnnAG  124 (287)
T 3rku_A          112 EFKDIDILVNNAG  124 (287)
T ss_dssp             GGCSCCEEEECCC
T ss_pred             hcCCCCEEEECCC
Confidence              47999999887

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.41  E-value=0.00045  Score=59.27  Aligned_cols=81  Identities=22%  Similarity=0.380  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHHh---CCC-ce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKEEF---GYD-DA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+||+|++|..+++.+...|++|++++++ +++.+.+.+++   +.. ..  .|..+..++.+.+.++.  -++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999888899999999987 66555443232   322 11  24444344444443322  146


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|++|.+.|.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.41  E-value=0.0008  Score=58.22  Aligned_cols=82  Identities=15%  Similarity=0.226  Sum_probs=56.0

Q ss_pred             CCCCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCChHHHHH---HHHHhCCCcee--ecCChhhHHHHHHHHC--C
Q 042784          162 PKSGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSDDNVKL---LKEEFGYDDAF--NYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       162 ~~~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~~~~~~---~~~~~g~~~v~--~~~~~~~~~~~i~~~~--~  232 (356)
                      ...+++|||+||+  |++|.++++.+...|++|++++++++..+.   +.++.+....+  |..+..++.+.+.++.  -
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4568999999998  999999999998999999999887544333   33244433233  4444344444443332  2


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +++|++|.+.|
T Consensus        91 g~id~lv~nAg  101 (271)
T 3ek2_A           91 DSLDGLVHSIG  101 (271)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            47999999886

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.41  E-value=0.00067  Score=58.80  Aligned_cols=80  Identities=21%  Similarity=0.273  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHH---hCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEE---FGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+||+|++|..+++.+...|++|+++++ ++++.+.+.++   .+...   ..|..+..++.+.+.++.  -++
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   99 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   99 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999889999999998 66665444323   34431   134444344444443322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus       100 ~d~vi~~Ag  108 (274)
T 1ja9_A          100 LDFVMSNSG  108 (274)
T ss_dssp             EEEEECCCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.40  E-value=0.0003  Score=61.60  Aligned_cols=95  Identities=17%  Similarity=0.118  Sum_probs=63.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|||+||+|.+|..+++.+... |.+|+++++++++...+. ..+... ..|..+...+.+.+     .++|+||.+.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~-~~~v~~~~~D~~d~~~l~~~~-----~~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW-RGKVSVRQLDYFNQESMVEAF-----KGMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG-BTTBEEEECCTTCHHHHHHHT-----TTCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh-hCCCEEEEcCCCCHHHHHHHH-----hCCCEEEEeCCC
Confidence            5999999999999999888877 899999999887755443 333321 23454433333322     369999999874


Q ss_pred             --------hhHHHHHHhcccC--CEEEEEeccc
Q 042784          245 --------KMLEAVLNHVNVH--ARIILCGMIS  267 (356)
Q Consensus       245 --------~~~~~~~~~l~~~--G~~v~~g~~~  267 (356)
                              .....+++.++..  ++++.++...
T Consensus        76 ~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           76 IHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence                    1233445555443  5788887654

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.40  E-value=0.00076  Score=58.09  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHH---HHHHhCCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKL---LKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~---~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|+++||+||++++|.++++.+...|++|++.++++++.+.   ++ +.|...   ..|..+..++.+.+.+..  -+++
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i   84 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALA-QRQPRATYLPVELQDDAQCRDAVAQTIATFGRL   84 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHH-HHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHH-hcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            48999999999999999999999999999999987665433   33 334321   234444334333333322  1579


Q ss_pred             eEEEECCch----------hh---------------HHHHHHhc-ccCCEEEEEecccc
Q 042784          236 DVYLDNVGG----------KM---------------LEAVLNHV-NVHARIILCGMISQ  268 (356)
Q Consensus       236 d~vld~~g~----------~~---------------~~~~~~~l-~~~G~~v~~g~~~~  268 (356)
                      |+++++.|.          +.               .+.++..| +.+|++|.++...+
T Consensus        85 DiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  143 (258)
T 4gkb_A           85 DGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTA  143 (258)
T ss_dssp             CEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHH
T ss_pred             CEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhh
Confidence            999999872          11               13344445 35699999887554

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.40  E-value=0.00072  Score=60.26  Aligned_cols=80  Identities=26%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe---------CChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST---------GSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~---------~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      .|.++||+|++|++|.++++.+...|++|++.+         ++.++.+.+.++   .+...+.|..+..++.+.+.++.
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            478999999999999999998888999999864         344554433322   34444567666444433333321


Q ss_pred             --CCCceEEEECCc
Q 042784          232 --PNGIDVYLDNVG  243 (356)
Q Consensus       232 --~~~~d~vld~~g  243 (356)
                        -+++|++|++.|
T Consensus        88 ~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           88 DTFGRIDVVVNNAG  101 (319)
T ss_dssp             HHTSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence              246999999987

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.39  E-value=0.0019  Score=49.85  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee-ecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF-NYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~-~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      ..+|+|.|+ |.+|..+++.+...|.+|+++++++++.+.++ +.|...+. |..+    .+.+.+..-.++|+++.+++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~-~~~~~~~~gd~~~----~~~l~~~~~~~~d~vi~~~~   79 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLE-DEGFDAVIADPTD----ESFYRSLDLEGVSAVLITGS   79 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HTTCEEEECCTTC----HHHHHHSCCTTCSEEEECCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HCCCcEEECCCCC----HHHHHhCCcccCCEEEEecC
Confidence            468999997 99999999999999999999999999999888 55654221 3322    22334433347999999999


Q ss_pred             hh
Q 042784          244 GK  245 (356)
Q Consensus       244 ~~  245 (356)
                      +.
T Consensus        80 ~~   81 (141)
T 3llv_A           80 DD   81 (141)
T ss_dssp             CH
T ss_pred             CH
Confidence            64

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.39  E-value=0.0005  Score=59.73  Aligned_cols=80  Identities=29%  Similarity=0.424  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHH---HhCCCc-e--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKE---EFGYDD-A--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~---~~g~~~-v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|++++++ ++..+.+++   +.+... +  .|..+..++.+.+.++.  .++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  107 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGG  107 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            47899999999999999999888999999999984 444443332   334321 2  24444344444444332  247


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus       108 id~li~nAg  116 (271)
T 4iin_A          108 LSYLVNNAG  116 (271)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.38  E-value=0.0015  Score=57.74  Aligned_cols=86  Identities=14%  Similarity=0.195  Sum_probs=58.4

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCC---hHHHHHHHHHhC----C-CceeecCChhhH
Q 042784          153 WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGS---DDNVKLLKEEFG----Y-DDAFNYNSEMSF  223 (356)
Q Consensus       153 ~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s---~~~~~~~~~~~g----~-~~v~~~~~~~~~  223 (356)
                      ..+|.+..---.+.+++|+|+ |++|.+++..+...|+ +|+++.++   .++.+.+.++++    . ..++++.+..++
T Consensus       142 ~~~L~~~~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l  220 (315)
T 3tnl_A          142 MRALKEAGHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQL  220 (315)
T ss_dssp             HHHHHHTTCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHH
T ss_pred             HHHHHHcCCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHH
Confidence            344543222235889999997 9999999999999999 99999998   777665544433    2 123455432334


Q ss_pred             HHHHHHHCCCCceEEEECCch
Q 042784          224 DAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~  244 (356)
                      .+.+.     .+|+||+|+.-
T Consensus       221 ~~~l~-----~aDiIINaTp~  236 (315)
T 3tnl_A          221 RKEIA-----ESVIFTNATGV  236 (315)
T ss_dssp             HHHHH-----TCSEEEECSST
T ss_pred             Hhhhc-----CCCEEEECccC
Confidence            44443     38999999863

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.38  E-value=0.00077  Score=57.37  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEeCChHHHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC-------KVVGSTGSDDNVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~-------~V~~~~~s~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~  231 (356)
                      +.++||+||+|++|.++++.+...|+       +|+++++++++.+.+.+++   +.. .  ..|..+..++.+.+.++.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            56899999999999999988888898       9999999988776655443   321 1  124444334444333322


Q ss_pred             --CCCceEEEECCc
Q 042784          232 --PNGIDVYLDNVG  243 (356)
Q Consensus       232 --~~~~d~vld~~g  243 (356)
                        -+++|++|.+.|
T Consensus        82 ~~~g~id~li~~Ag   95 (244)
T 2bd0_A           82 ERYGHIDCLVNNAG   95 (244)
T ss_dssp             HHTSCCSEEEECCC
T ss_pred             HhCCCCCEEEEcCC
Confidence              246999999987

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.38  E-value=0.00094  Score=57.19  Aligned_cols=75  Identities=19%  Similarity=0.370  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .+.++||+|++|++|.++++.+...|++|++++++++.    + +.+.. ...|..+..++.+.+.+..  -+++|++++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~----~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ----E-QYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS----S-CCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh----h-cCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46899999999999999999999999999999987552    2 33421 1234454344444444332  246999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        81 ~Ag   83 (250)
T 2fwm_X           81 AAG   83 (250)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.38  E-value=0.0012  Score=57.69  Aligned_cols=80  Identities=15%  Similarity=0.245  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC------------hHHHHHHHH---HhCCCc---eeecCChhhHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS------------DDNVKLLKE---EFGYDD---AFNYNSEMSFDA  225 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~~  225 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++            .++.+...+   ..|...   ..|..+..++.+
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            47899999999999999999999999999999986            344333221   334331   124444334443


Q ss_pred             HHHHHC--CCCceEEEECCc
Q 042784          226 ALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       226 ~i~~~~--~~~~d~vld~~g  243 (356)
                      .+.+..  -+++|+++.+.|
T Consensus        89 ~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           89 FVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             HHHHHHHHHTCCCEEEECCC
T ss_pred             HHHHHHHhcCCCCEEEECCC
Confidence            333321  146999999987

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.00043  Score=59.54  Aligned_cols=79  Identities=20%  Similarity=0.261  Sum_probs=55.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      |+++||+||++++|.++++.+...  |++|+.+++++++.+.+.++++...   ..|..+..++.+.+.++.  .+++|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            578999999999999988666555  5799999999988887776665431   124444334443333322  147999


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ++.+.|
T Consensus        82 lvnnAg   87 (254)
T 3kzv_A           82 LVANAG   87 (254)
T ss_dssp             EEEECC
T ss_pred             EEECCc
Confidence            999887

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.35  E-value=0.00036  Score=61.18  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHHHh----CCCc---eeecCC----hhhHHHHHHHHC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLKEEF----GYDD---AFNYNS----EMSFDAALTKYF  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~~~~----g~~~---v~~~~~----~~~~~~~i~~~~  231 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++ ++.+.+.+++    |...   ..|..+    ..++.+.+.++.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            478999999999999999988888899999999887 6655444333    3221   124444    334433333321


Q ss_pred             --CCCceEEEECCc
Q 042784          232 --PNGIDVYLDNVG  243 (356)
Q Consensus       232 --~~~~d~vld~~g  243 (356)
                        -+++|++|.+.|
T Consensus       102 ~~~g~iD~lvnnAG  115 (288)
T 2x9g_A          102 RAFGRCDVLVNNAS  115 (288)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence              146999999887

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.35  E-value=0.00063  Score=59.44  Aligned_cols=82  Identities=17%  Similarity=0.187  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHH---hCCCc---eeecCChhhHHHHHHHHC--CC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEE---FGYDD---AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      -.+.++||+||+|++|.++++.+...|++|+++++ ++++.+.+.++   .|...   ..|..+..++.+.+.++.  -+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45789999999999999999999999999999985 55555444323   34321   124444344444443322  14


Q ss_pred             CceEEEECCch
Q 042784          234 GIDVYLDNVGG  244 (356)
Q Consensus       234 ~~d~vld~~g~  244 (356)
                      ++|+++.+.|.
T Consensus       107 ~iD~lvnnAg~  117 (280)
T 4da9_A          107 RIDCLVNNAGI  117 (280)
T ss_dssp             CCCEEEEECC-
T ss_pred             CCCEEEECCCc
Confidence            69999998874

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.35  E-value=0.00075  Score=58.76  Aligned_cols=80  Identities=15%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-------------ChHHHHHHHH---HhCCCc---eeecCChhhHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-------------SDDNVKLLKE---EFGYDD---AFNYNSEMSFD  224 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-------------s~~~~~~~~~---~~g~~~---v~~~~~~~~~~  224 (356)
                      .|+++||+||++++|.++++.+...|++|+++++             +.++.+.+.+   ..+...   ..|..+..++.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            4789999999999999999999999999999987             4555444332   233321   12444434444


Q ss_pred             HHHHHHC--CCCceEEEECCc
Q 042784          225 AALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       225 ~~i~~~~--~~~~d~vld~~g  243 (356)
                      +.+.++.  -+++|+++++.|
T Consensus        90 ~~~~~~~~~~g~id~lvnnAg  110 (277)
T 3tsc_A           90 KVVDDGVAALGRLDIIVANAG  110 (277)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEECCC
Confidence            4343322  146999999987

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.35  E-value=0.00022  Score=61.15  Aligned_cols=75  Identities=23%  Similarity=0.280  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC--CCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF--PNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~--~~~~d~vld~  241 (356)
                      .+.++||+|++|++|.++++.+...|++|+++++++++.+.+.   +  ...|..+..++.+.+.+..  -+++|+++.+
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~   88 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF---G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   88 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE---E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhc---C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            4789999999999999999998889999999998765433221   1  2345555344443333321  1469999998


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        89 Ag   90 (247)
T 1uzm_A           89 AG   90 (247)
T ss_dssp             CS
T ss_pred             CC
Confidence            87

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.35  E-value=0.0011  Score=56.73  Aligned_cols=73  Identities=22%  Similarity=0.297  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce-eecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA-FNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v-~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      -.+.++||+||+|++|.++++.+...|++|++++++++.   ++ +++.... .|.  ..++.+.+.++.  ++|+++++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~---~~-~~~~~~~~~D~--~~~~~~~~~~~~--~iD~lv~~   88 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL---LK-RSGHRYVVCDL--RKDLDLLFEKVK--EVDILVLN   88 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HH-HTCSEEEECCT--TTCHHHHHHHSC--CCSEEEEC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH---HH-hhCCeEEEeeH--HHHHHHHHHHhc--CCCEEEEC
Confidence            457899999999999999999988899999999988743   33 4442222 222  134444444432  69999999


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        89 Ag   90 (249)
T 1o5i_A           89 AG   90 (249)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.34  E-value=0.0013  Score=57.15  Aligned_cols=80  Identities=19%  Similarity=0.276  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC------------hHHHHHHHH---HhCCCce---eecCChhhHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS------------DDNVKLLKE---EFGYDDA---FNYNSEMSFDA  225 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s------------~~~~~~~~~---~~g~~~v---~~~~~~~~~~~  225 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++            .++.+.+.+   ..+....   .|..+..++.+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            47899999999999999999999999999999876            444443321   3344311   24444344444


Q ss_pred             HHHHHC--CCCceEEEECCc
Q 042784          226 ALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       226 ~i~~~~--~~~~d~vld~~g  243 (356)
                      .+.+..  -+++|+++.+.|
T Consensus        92 ~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           92 ALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             HHHHHHHHHCCCCEEEECCC
T ss_pred             HHHHHHHHcCCCCEEEECCC
Confidence            443322  146999999987

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.34  E-value=0.0012  Score=57.52  Aligned_cols=81  Identities=12%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             CCCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCC
Q 042784          163 KSGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSD--DNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~--~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      -.+.++||+||+  +|+|.++++.+...|++|++++++.  +..+.+.++.+....  .|..+..++.+.+.++.  -+.
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            357899999998  6699999998889999999999877  556666534443222  24444344444343332  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       104 id~li~nAg  112 (280)
T 3nrc_A          104 LDAIVHSIA  112 (280)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999987

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.34  E-value=0.00087  Score=58.29  Aligned_cols=77  Identities=19%  Similarity=0.255  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHH---HHHHHHCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFD---AALTKYFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~---~~i~~~~~~~  234 (356)
                      .|.++||+||+|++|.++++.+...|++|+++++++...+.++ ++   +..   ...|..+..++.   +.+.+.  ++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVAD-EIADGGGSAEAVVADLADLEGAANVAEELAAT--RR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHH-HHHTTTCEEEEEECCTTCHHHHHHHHHHHHHH--SC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-HHHhcCCcEEEEEecCCCHHHHHHHHHHHHhc--CC
Confidence            4789999999999999999999899999999996654443333 33   321   112444422222   222222  57


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       107 iD~lv~nAg  115 (273)
T 3uf0_A          107 VDVLVNNAG  115 (273)
T ss_dssp             CCEEEECCC
T ss_pred             CcEEEECCC
Confidence            999999987

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.34  E-value=0.0031  Score=52.88  Aligned_cols=102  Identities=7%  Similarity=0.098  Sum_probs=70.6

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHH---hCCC-ceeecCChhhHHHHHHHHCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEE---FGYD-DAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~i~~~~~  232 (356)
                      ..+.+++.+||=.|  .+.|..++.+++.+  +.+|++++.+++..+.+++.   .|.. .-+.... .+..+.+..+..
T Consensus        51 ~~~~~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~-gda~~~l~~~~~  127 (221)
T 3dr5_A           51 TTNGNGSTGAIAIT--PAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL-SRPLDVMSRLAN  127 (221)
T ss_dssp             HSCCTTCCEEEEES--TTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC-SCHHHHGGGSCT
T ss_pred             hhCCCCCCCEEEEc--CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE-cCHHHHHHHhcC
Confidence            34445566999888  57899999999987  57999999999988777643   3443 2233222 344444444334


Q ss_pred             CCceEEEECCch----hhHHHHHHhcccCCEEEEE
Q 042784          233 NGIDVYLDNVGG----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       233 ~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~  263 (356)
                      +.||+||-....    ..+..+.+.|+|+|.++.-
T Consensus       128 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          128 DSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             TCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEET
T ss_pred             CCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEe
Confidence            679999865433    2678899999999998863

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.34  E-value=0.00055  Score=61.76  Aligned_cols=79  Identities=23%  Similarity=0.380  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-----------HHHHHHHhCCCc---eeecCChhhHHHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-----------VKLLKEEFGYDD---AFNYNSEMSFDAALTK  229 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-----------~~~~~~~~g~~~---v~~~~~~~~~~~~i~~  229 (356)
                      .|+++||+||++++|.++++.+...|++|+++++++++           .+.++ ..|...   ..|..+..++.+.+.+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~-~~g~~~~~~~~Dv~d~~~v~~~~~~  122 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIE-AVGGKALPCIVDVRDEQQISAAVEK  122 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHH-hcCCeEEEEEccCCCHHHHHHHHHH
Confidence            47899999999999999999998999999999987653           23333 445421   1355554444444443


Q ss_pred             HC--CCCceEEEECCc
Q 042784          230 YF--PNGIDVYLDNVG  243 (356)
Q Consensus       230 ~~--~~~~d~vld~~g  243 (356)
                      +.  -+++|++|.+.|
T Consensus       123 ~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          123 AIKKFGGIDILVNNAS  138 (346)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            32  147999999988

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.33  E-value=0.00048  Score=60.54  Aligned_cols=80  Identities=14%  Similarity=0.116  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHHHh----CCCc-e--eecCChh--------------
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKEEF----GYDD-A--FNYNSEM--------------  221 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~~~----g~~~-v--~~~~~~~--------------  221 (356)
                      .+.++||+|++|++|.++++.+...|++|++++ +++++.+.+.+++    |... .  .|..+..              
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   87 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT   87 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccccc
Confidence            478999999999999999999999999999999 8888766554333    3221 1  2333323              


Q ss_pred             ---hHHHHHHHHC--CCCceEEEECCc
Q 042784          222 ---SFDAALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       222 ---~~~~~i~~~~--~~~~d~vld~~g  243 (356)
                         ++.+.+.++.  -+++|++|++.|
T Consensus        88 ~~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (291)
T 1e7w_A           88 LFTRCAELVAACYTHWGRCDVLVNNAS  114 (291)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             hHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence               4444333322  146999999987

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.33  E-value=0.00049  Score=58.71  Aligned_cols=75  Identities=17%  Similarity=0.360  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHHHhCCCce---eecCChhhHHHHHHHH-CCCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD--DNVKLLKEEFGYDDA---FNYNSEMSFDAALTKY-FPNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~--~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~-~~~~~d~  237 (356)
                      .|+++||+|+++++|.++++.+...|++|++++++.  +..+.++ +.|....   .|..+...    +++. ..+++|+
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~-~~g~~~~~~~~Dv~d~~~----v~~~~~~g~iDi   82 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIA-KDGGNASALLIDFADPLA----AKDSFTDAGFDI   82 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTSTTT----TTTSSTTTCCCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHH-HhCCcEEEEEccCCCHHH----HHHHHHhCCCCE
Confidence            489999999999999999999999999999999764  3455566 5665422   23333122    2222 2357999


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ++++.|
T Consensus        83 LVNNAG   88 (247)
T 4hp8_A           83 LVNNAG   88 (247)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999988

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.33  E-value=0.0008  Score=59.35  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC------------hHHHHHHHH---HhCCCc---eeecCChhhHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS------------DDNVKLLKE---EFGYDD---AFNYNSEMSFDA  225 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~~  225 (356)
                      .|+++||+||++++|.++++.+...|++|++++++            .++.+.+.+   ..|...   ..|..+..++.+
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            47899999999999999999999999999999876            444443322   344431   134444344444


Q ss_pred             HHHHHC--CCCceEEEECCc
Q 042784          226 ALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       226 ~i~~~~--~~~~d~vld~~g  243 (356)
                      .+.++.  -+++|+++.+.|
T Consensus       107 ~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          107 AVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             HHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHhCCCCEEEECCC
Confidence            343322  146999999887

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.31  E-value=0.00075  Score=57.36  Aligned_cols=75  Identities=11%  Similarity=0.212  Sum_probs=52.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHC--CCCceEEEEC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYF--PNGIDVYLDN  241 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~--~~~~d~vld~  241 (356)
                      ++++||+||+|++|.++++.+...|++|+++++++++  ..+ ++|... ..|..+ .++.+.+.+..  -+++|+++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~--~~~-~~~~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv~~   77 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE--AAQ-SLGAVPLPTDLEK-DDPKGLVKRALEALGGLHVLVHA   77 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH--HHH-HHTCEEEECCTTT-SCHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHH-hhCcEEEecCCch-HHHHHHHHHHHHHcCCCCEEEEC
Confidence            5789999999999999999999999999999988766  333 556321 123333 33333333221  1469999999


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        78 Ag   79 (239)
T 2ekp_A           78 AA   79 (239)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.31  E-value=0.00029  Score=59.22  Aligned_cols=95  Identities=15%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      .+|||+||+|.+|..+++.+...|.+|+++++++++.+.+.  -+.. ...|..+..++.+.+     .++|+||.++|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~-----~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVCEVC-----KGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC--TTEEEECCCTTCHHHHHHHH-----TTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc--CceEEEEecCCCHHHHHHHh-----cCCCEEEEeCcC
Confidence            58999999999999999999999999999999877653221  0111 112344433343333     259999999875


Q ss_pred             h------------hHHHHHHhcccC--CEEEEEeccc
Q 042784          245 K------------MLEAVLNHVNVH--ARIILCGMIS  267 (356)
Q Consensus       245 ~------------~~~~~~~~l~~~--G~~v~~g~~~  267 (356)
                      .            ....+++.++..  ++++.++...
T Consensus        78 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           78 GWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             ------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            2            223344444433  4788877643

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.30  E-value=0.0011  Score=56.28  Aligned_cols=79  Identities=23%  Similarity=0.313  Sum_probs=53.8

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHHH---hCCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKEE---FGYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      |.++||+||+|++|..+++.+...|++|+++ .+++++.+.+.++   .+..   ...|..+..++.+.+.+..  -+++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            5689999999999999999999999999885 7777666544322   2432   1134444344444444322  2469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus        81 d~li~~Ag   88 (244)
T 1edo_A           81 DVVVNNAG   88 (244)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.30  E-value=0.001  Score=57.21  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHH----HHHHHhCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK----LLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~----~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+||+|++|.++++.+...|++|++++++.++..    .+.++.+...   ..|..+..++.+.+.++.  -+.
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            3678999999999999999988889999999998544332    2221334331   124444344444444332  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        93 id~li~~Ag  101 (265)
T 1h5q_A           93 ISGLIANAG  101 (265)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.29  E-value=0.00055  Score=61.30  Aligned_cols=80  Identities=14%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHHHh----CCCc-e--eecCChh--------------
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKEEF----GYDD-A--FNYNSEM--------------  221 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~~~----g~~~-v--~~~~~~~--------------  221 (356)
                      .+.++||+||+|++|.++++.+...|++|++++ +++++.+.+.+++    |... .  .|..+..              
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~  124 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT  124 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCBC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccccc
Confidence            478999999999999999999999999999999 8888776655443    3221 1  2333323              


Q ss_pred             ---hHHHHHHHHC--CCCceEEEECCc
Q 042784          222 ---SFDAALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       222 ---~~~~~i~~~~--~~~~d~vld~~g  243 (356)
                         ++.+.+.++.  -+++|++|.+.|
T Consensus       125 ~~~~v~~~~~~~~~~~g~iD~lVnnAG  151 (328)
T 2qhx_A          125 LFTRCAELVAACYTHWGRCDVLVNNAS  151 (328)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             cHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence               4444333322  146999999987

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.28  E-value=0.0007  Score=59.29  Aligned_cols=79  Identities=23%  Similarity=0.343  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-----------HHHHHHHhCCCc-e--eecCChhhHHHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-----------VKLLKEEFGYDD-A--FNYNSEMSFDAALTK  229 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-----------~~~~~~~~g~~~-v--~~~~~~~~~~~~i~~  229 (356)
                      .++++||+||++++|.++++.+...|++|+++++++++           .+.++ +.+... .  .|..+..++.+.+.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIE-EAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHH-HHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHH-hcCCcEEEEECCCCCHHHHHHHHHH
Confidence            47899999999999999999888899999999987652           22233 344421 1  244443444443333


Q ss_pred             HC--CCCceEEEECCc
Q 042784          230 YF--PNGIDVYLDNVG  243 (356)
Q Consensus       230 ~~--~~~~d~vld~~g  243 (356)
                      +.  -+++|+++.+.|
T Consensus        87 ~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           87 TVEQFGGIDICVNNAS  102 (285)
T ss_dssp             HHHHHSCCSEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            22  146999999987

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.28  E-value=0.0011  Score=56.45  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHHH---hCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKEE---FGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+|++|++|..+++.+...|++|+++ .+++++.+.+.++   .+...   ..|..+..++.+.+.+..  -++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999998999999998 5555544433222   34321   124444334444333321  146


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|++|.+.|.
T Consensus        84 ~d~vi~~Ag~   93 (247)
T 2hq1_A           84 IDILVNNAGI   93 (247)
T ss_dssp             CCEEEECC--
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.28  E-value=0.00083  Score=57.39  Aligned_cols=80  Identities=20%  Similarity=0.264  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .++++||+||+|++|.++++.+...|++|+++++ +.++.+.+.+   ..|...   ..|..+..++.+.+.++.  -++
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            3689999999999999999999999999988876 4455444332   234331   124444344444343322  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        83 id~lv~nAg   91 (246)
T 3osu_A           83 LDVLVNNAG   91 (246)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.28  E-value=0.00088  Score=57.53  Aligned_cols=79  Identities=18%  Similarity=0.311  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH--HHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN--VKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~--~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .++++||+|++|++|.++++.+...|++|+++++++++  .+.++ +.|....   .|..+..++.+.+.+..  -+++|
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIA-RHGVKAVHHPADLSDVAQIEALFALAEREFGGVD   81 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHH-TTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH-hcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            36899999999999999999998899999999877651  12222 2243211   24444344444443322  14699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++++.|
T Consensus        82 ~lv~~Ag   88 (255)
T 2q2v_A           82 ILVNNAG   88 (255)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.27  E-value=0.0017  Score=56.18  Aligned_cols=74  Identities=23%  Similarity=0.288  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.      -... ...|..+..++.+.+.++.  -+++|+++.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~------~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGE------AKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCS------CSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccC------CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            368999999999999999999999999999999876540      0111 1234444344444333322  146999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        81 ~Ag   83 (264)
T 2dtx_A           81 NAG   83 (264)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.25  E-value=0.0015  Score=58.04  Aligned_cols=80  Identities=23%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC------------hHHHHHHHH---HhCCCce---eecCChhhHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS------------DDNVKLLKE---EFGYDDA---FNYNSEMSFDA  225 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s------------~~~~~~~~~---~~g~~~v---~~~~~~~~~~~  225 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++            .++.+.+.+   +.|....   .|..+..++.+
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            57899999999999999999999999999998765            444433321   3343311   24444344444


Q ss_pred             HHHHHC--CCCceEEEECCc
Q 042784          226 ALTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       226 ~i~~~~--~~~~d~vld~~g  243 (356)
                      .+.++.  -+++|++|.+.|
T Consensus       125 ~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          125 VVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             HHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHcCCCCEEEECCC
Confidence            443322  146999999987

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.25  E-value=0.0011  Score=59.20  Aligned_cols=79  Identities=23%  Similarity=0.382  Sum_probs=53.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-----hHHHHHHHH---HhCCC-c--eeecCChhhHHHHHHHHC--
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-----DDNVKLLKE---EFGYD-D--AFNYNSEMSFDAALTKYF--  231 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-----~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~i~~~~--  231 (356)
                      ++++||+||+|++|.++++.+...|++|++++++     .++.+.+.+   ..+.. .  ..|..+..++.+.+.++.  
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~   84 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGE   84 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            6799999999999999999999999999998765     333333331   23432 1  234444444444444332  


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                      -+++|+++++.|
T Consensus        85 ~g~iD~lVnnAG   96 (324)
T 3u9l_A           85 DGRIDVLIHNAG   96 (324)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            247999999988

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.25  E-value=0.00022  Score=59.71  Aligned_cols=94  Identities=15%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|||+||+|.+|..+++.+...|.+|+++++++++.+.+    ....++  |..+   ..+.+.+.. .++|+||.++|.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----~~~~~~~~D~~d---~~~~~~~~~-~~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----NNVKAVHFDVDW---TPEEMAKQL-HGMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----TTEEEEECCTTS---CHHHHHTTT-TTCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----CCceEEEecccC---CHHHHHHHH-cCCCEEEECCcC
Confidence            699999999999999999999999999999987654422    111122  2322   123344433 369999999984


Q ss_pred             h----------hHHHHHHhcccC--CEEEEEecccc
Q 042784          245 K----------MLEAVLNHVNVH--ARIILCGMISQ  268 (356)
Q Consensus       245 ~----------~~~~~~~~l~~~--G~~v~~g~~~~  268 (356)
                      .          .....++.++..  ++++.++....
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           74 GGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             TTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             CCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            2          123344444333  58888877544

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.25  E-value=0.0007  Score=55.73  Aligned_cols=96  Identities=11%  Similarity=0.106  Sum_probs=61.1

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      .+|+|+||+|.+|..+++.+...|.+|+++++++++..... .-+.. ...|..+..++.+.+     .++|+||.+.|.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~-----~~~d~vi~~a~~   77 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-PRPAHVVVGDVLQAADVDKTV-----AGQDAVIVLLGT   77 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS-CCCSEEEESCTTSHHHHHHHH-----TTCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccccc-CCceEEEEecCCCHHHHHHHH-----cCCCEEEECccC
Confidence            68999999999999999999889999999998876643221 11111 112333323333333     358999999874


Q ss_pred             h-----------hHHHHHHhccc--CCEEEEEeccc
Q 042784          245 K-----------MLEAVLNHVNV--HARIILCGMIS  267 (356)
Q Consensus       245 ~-----------~~~~~~~~l~~--~G~~v~~g~~~  267 (356)
                      .           .....++.++.  .++++.++...
T Consensus        78 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~  113 (206)
T 1hdo_A           78 RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF  113 (206)
T ss_dssp             TTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred             CCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeeee
Confidence            2           12333343332  35888877654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.23  E-value=0.0024  Score=52.69  Aligned_cols=102  Identities=11%  Similarity=0.097  Sum_probs=70.4

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ...+++++++||-.|+ | .|..++.+++... .+|++++.+++..+.+++.   .|...+--..  .++.+.+..  ..
T Consensus        34 ~~l~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~--~~  107 (204)
T 3e05_A           34 SKLRLQDDLVMWDIGA-G-SASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVE--AFAPEGLDD--LP  107 (204)
T ss_dssp             HHTTCCTTCEEEEETC-T-TCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEE--CCTTTTCTT--SC
T ss_pred             HHcCCCCCCEEEEECC-C-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe--CChhhhhhc--CC
Confidence            4567889999999995 5 4888999998863 5999999999988887642   3443221111  111111111  14


Q ss_pred             CceEEEECCch----hhHHHHHHhcccCCEEEEEec
Q 042784          234 GIDVYLDNVGG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       234 ~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .+|+|+.....    ..+..+.+.|+++|+++....
T Consensus       108 ~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          108 DPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             CCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            69999987652    478889999999999987644

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.23  E-value=0.0012  Score=54.46  Aligned_cols=63  Identities=14%  Similarity=0.239  Sum_probs=47.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      ++||+||+|++|...++.+. .|++|++++++++           ....|..+..++.+.+.++  +++|++|.+.|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------~~~~D~~~~~~~~~~~~~~--~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------DVTVDITNIDSIKKMYEQV--GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------SEECCTTCHHHHHHHHHHH--CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------ceeeecCCHHHHHHHHHHh--CCCCEEEECCC
Confidence            79999999999999998888 8999999987653           1234555544555555554  46999999987

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.23  E-value=0.0016  Score=56.64  Aligned_cols=79  Identities=23%  Similarity=0.326  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-------HH----HHHHHhCCC---ceeecCChhhHHHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-------VK----LLKEEFGYD---DAFNYNSEMSFDAALTK  229 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-------~~----~~~~~~g~~---~v~~~~~~~~~~~~i~~  229 (356)
                      .|+++||+|+++++|.++++.+...|++|++++++.++       .+    .++ ..|..   ...|..+..++.+.+.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVN-AAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHH-HHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHH-hcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            47899999999999999999988999999999987642       22    222 33432   12344443444433333


Q ss_pred             HC--CCCceEEEECCc
Q 042784          230 YF--PNGIDVYLDNVG  243 (356)
Q Consensus       230 ~~--~~~~d~vld~~g  243 (356)
                      +.  -+++|+++++.|
T Consensus        84 ~~~~~g~iD~lvnnAG   99 (274)
T 3e03_A           84 TVDTFGGIDILVNNAS   99 (274)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            22  146999999988

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.23  E-value=0.00042  Score=60.18  Aligned_cols=77  Identities=18%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC-CceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY-DDAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~-~~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      -..+++|||+||+|++|.++++.+...|++|+++++++++..    . .. ....|..+..++.+.+.++.  -+++|++
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   85 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV----N-VSDHFKIDVTNEEEVKEAVEKTTKKYGRIDIL   85 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT----T-SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc----C-ceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            456899999999999999999999899999999998765431    1 11 11234454344444333322  1479999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        86 v~nAg   90 (269)
T 3vtz_A           86 VNNAG   90 (269)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.22  E-value=0.0005  Score=58.77  Aligned_cols=70  Identities=20%  Similarity=0.264  Sum_probs=47.1

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      ++|||+||+|++|..++..+...|++|+++++++++.+.       ....|..+..++.+.+.++ .+++|++|.+.|
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~D~~~~~~~~~~~~~~-~~~~d~vi~~Ag   71 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA-------DLSTPGGRETAVAAVLDRC-GGVLDGLVCCAG   71 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------CTTSHHHHHHHHHHHHHHH-TTCCSEEEECCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc-------cccCCcccHHHHHHHHHHc-CCCccEEEECCC
Confidence            479999999999999998888899999999987653210       1111222112333333333 257999999887

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.22  E-value=0.0016  Score=56.26  Aligned_cols=80  Identities=26%  Similarity=0.334  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCChH-----HHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--
Q 042784          164 SGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSDD-----NVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--  231 (356)
Q Consensus       164 ~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~~-----~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--  231 (356)
                      .++++||+||+  +++|.++++.+...|++|++++++.+     ..+.+.+..+..   ...|..+..++.+.+.++.  
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVAD   98 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence            47899999998  89999999988899999999887643     233333244543   1234444344444333332  


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                      -+++|++|.+.|
T Consensus        99 ~g~id~li~nAg  110 (267)
T 3gdg_A           99 FGQIDAFIANAG  110 (267)
T ss_dssp             TSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            247999999987

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.22  E-value=0.0014  Score=56.13  Aligned_cols=80  Identities=20%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCCh--HHHHHHHHHhC-CC-ce--eecCCh-hhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSD--DNVKLLKEEFG-YD-DA--FNYNSE-MSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~--~~~~~~~~~~g-~~-~v--~~~~~~-~~~~~~i~~~~--~~  233 (356)
                      .+.+++|+||+|++|.++++.+...|++ |+++++++  +..+.+++..+ .. ..  .|..+. .++.+.+.++.  -+
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            4689999999999999999999899995 98888775  34444442322 11 11  244442 33333333321  14


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|++|.+.|
T Consensus        84 ~id~lv~~Ag   93 (254)
T 1sby_A           84 TVDILINGAG   93 (254)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6999999988

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.22  E-value=0.0017  Score=55.66  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=73.9

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHH
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      +....++.++++||-.|+ |. |..+..+++..  +.+|++++.+++..+.+++.   .|....++... .++.+.   +
T Consensus        85 i~~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~---~  158 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGV-GS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL-KDIYEG---I  158 (255)
T ss_dssp             HHHHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC-SCGGGC---C
T ss_pred             HHHhhCCCCCCEEEEecC-Cc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEE-Cchhhc---c
Confidence            334677899999999995 54 88899999885  45999999999888887743   35443122211 222211   2


Q ss_pred             CCCCceEEEECCchh--hHHHHHHhcccCCEEEEEec
Q 042784          231 FPNGIDVYLDNVGGK--MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       231 ~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ..+.+|+|+......  .+..+.+.|+++|+++.+..
T Consensus       159 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          159 EEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             CCCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEEC
Confidence            234699999877664  88999999999999987643

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.21  E-value=0.00064  Score=57.90  Aligned_cols=78  Identities=18%  Similarity=0.301  Sum_probs=55.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHh-CCC-c--eeecCChhhHHHHHHHH---CC-CC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEEF-GYD-D--AFNYNSEMSFDAALTKY---FP-NG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~~-g~~-~--v~~~~~~~~~~~~i~~~---~~-~~  234 (356)
                      +.++||+||+|++|.++++.+...|  ++|++++++.++.+.++ ++ +.. .  ..|..+..++.+.+.++   .+ ++
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK-SIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH-TCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHH-hccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            6789999999999999999998899  99999999988777666 44 221 1  13444433333333332   22 26


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        82 id~li~~Ag   90 (250)
T 1yo6_A           82 LSLLINNAG   90 (250)
T ss_dssp             CCEEEECCC
T ss_pred             CcEEEECCc
Confidence            999999886

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.20  E-value=0.00074  Score=57.13  Aligned_cols=101  Identities=10%  Similarity=0.023  Sum_probs=69.1

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHC-CCC
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYF-PNG  234 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~-~~~  234 (356)
                      ....++++||-.|+ | .|..++.+++.. +.+|++++.+++..+.+++.+   |....+.... .+..+.+.... .+.
T Consensus        50 ~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  126 (233)
T 2gpy_A           50 LKMAAPARILEIGT-A-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLF-GDALQLGEKLELYPL  126 (233)
T ss_dssp             HHHHCCSEEEEECC-T-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC-SCGGGSHHHHTTSCC
T ss_pred             HhccCCCEEEEecC-C-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-CCHHHHHHhcccCCC
Confidence            34567899999995 4 788899999988 569999999999888877432   5422122111 22222222232 357


Q ss_pred             ceEEEECCch----hhHHHHHHhcccCCEEEEE
Q 042784          235 IDVYLDNVGG----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       235 ~d~vld~~g~----~~~~~~~~~l~~~G~~v~~  263 (356)
                      ||+|+.....    ..+..+.+.|+++|.++..
T Consensus       127 fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          127 FDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9999976653    3678888999999998865

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.20  E-value=0.001  Score=57.43  Aligned_cols=104  Identities=14%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD---NVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~---~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~  232 (356)
                      .++++||+||++++|.++++.+...|++|++++++..   +.+.+.+++   |..   ...|..+..++.+.+.++.  -
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   89 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF   89 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999899999999876533   333333233   322   1224444344444333322  1


Q ss_pred             CCceEEEECCch-----------hh---------------HHHHHHhcccCCEEEEEeccc
Q 042784          233 NGIDVYLDNVGG-----------KM---------------LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       233 ~~~d~vld~~g~-----------~~---------------~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +++|+++.+.|.           +.               .+.++..++..|+++.++...
T Consensus        90 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~  150 (262)
T 3ksu_A           90 GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSL  150 (262)
T ss_dssp             CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechh
Confidence            479999999882           11               122334456678999887654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.18  E-value=0.0008  Score=58.19  Aligned_cols=95  Identities=14%  Similarity=0.095  Sum_probs=69.6

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .++.+||..|+ |. |..+..+++.. |.+|++++.+++..+.++ +.+....+...+..++     .+..+.||+|+..
T Consensus        84 ~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~  155 (269)
T 1p91_A           84 DKATAVLDIGC-GE-GYYTHAFADALPEITTFGLDVSKVAIKAAA-KRYPQVTFCVASSHRL-----PFSDTSMDAIIRI  155 (269)
T ss_dssp             TTCCEEEEETC-TT-STTHHHHHHTCTTSEEEEEESCHHHHHHHH-HHCTTSEEEECCTTSC-----SBCTTCEEEEEEE
T ss_pred             CCCCEEEEECC-CC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HhCCCcEEEEcchhhC-----CCCCCceeEEEEe
Confidence            67899999996 66 99999999986 779999999999999998 4443322222210111     1123579999975


Q ss_pred             CchhhHHHHHHhcccCCEEEEEec
Q 042784          242 VGGKMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       242 ~g~~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .....+..+.+.|+|+|+++.+..
T Consensus       156 ~~~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          156 YAPCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             SCCCCHHHHHHHEEEEEEEEEEEE
T ss_pred             CChhhHHHHHHhcCCCcEEEEEEc
Confidence            555688999999999999987654

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.18  E-value=0.0015  Score=55.67  Aligned_cols=73  Identities=19%  Similarity=0.117  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .+.+|||+||+|.+|..+++.+...  |.+|+++++++++.+.+.  -+.. ...|..+..++.+.+     .++|+||.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~-----~~~d~vi~   75 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG--GEADVFIGDITDADSINPAF-----QGIDALVI   75 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT--CCTTEEECCTTSHHHHHHHH-----TTCSEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC--CCeeEEEecCCCHHHHHHHH-----cCCCEEEE
Confidence            4678999999999999999888888  789999999877654331  1222 112444423333333     25899999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      ++|
T Consensus        76 ~a~   78 (253)
T 1xq6_A           76 LTS   78 (253)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            886

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.18  E-value=0.0024  Score=55.42  Aligned_cols=94  Identities=12%  Similarity=0.041  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+.+++|+|+ |++|.++++.+...|++|++..++.++.+.+.++++....++..+..+    +.+   +++|++++|++
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~----~~~---~~~DivVn~t~  189 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE----LEG---HEFDLIINATS  189 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG----GTT---CCCSEEEECCS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHH----hcc---CCCCEEEECCC
Confidence            5889999998 999999999999999999999999888766655665421122211011    111   46999999998


Q ss_pred             hhhHHH----HHHhcccCCEEEEEec
Q 042784          244 GKMLEA----VLNHVNVHARIILCGM  265 (356)
Q Consensus       244 ~~~~~~----~~~~l~~~G~~v~~g~  265 (356)
                      ......    ....++++..++.+..
T Consensus       190 ~~~~~~~~~i~~~~l~~~~~v~D~~y  215 (271)
T 1nyt_A          190 SGISGDIPAIPSSLIHPGIYCYDMFY  215 (271)
T ss_dssp             CGGGTCCCCCCGGGCCTTCEEEESCC
T ss_pred             CCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            643210    1123455556666544

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.17  E-value=0.0016  Score=50.12  Aligned_cols=76  Identities=13%  Similarity=0.130  Sum_probs=54.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +++|+|.|+ |.+|...++.++..|.+|+++++++++.+.++ +.+.. ++..+. .+ .+.+.+..-+++|+++.|++.
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-~~~~~-~~~~d~-~~-~~~l~~~~~~~~d~vi~~~~~   80 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-SYATH-AVIANA-TE-ENELLSLGIRNFEYVIVAIGA   80 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT-TTCSE-EEECCT-TC-HHHHHTTTGGGCSEEEECCCS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhCCE-EEEeCC-CC-HHHHHhcCCCCCCEEEECCCC
Confidence            568999998 99999999999999999999998888877666 44543 232111 11 223333222469999999986


Q ss_pred             h
Q 042784          245 K  245 (356)
Q Consensus       245 ~  245 (356)
                      .
T Consensus        81 ~   81 (144)
T 2hmt_A           81 N   81 (144)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.16  E-value=0.00069  Score=58.51  Aligned_cols=74  Identities=15%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHC--CCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      .|+++||+||++++|.++++.+...|++|+++++++++      .+...  ...|..+..+....+.+..  -+++|+++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilV   83 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE------GLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIV   83 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT------TSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh------CCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            58999999999999999999999999999999976542      11111  1234444333333333322  24699999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      ++.|
T Consensus        84 nnAG   87 (261)
T 4h15_A           84 HMLG   87 (261)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9876

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.16  E-value=0.013  Score=52.86  Aligned_cols=37  Identities=19%  Similarity=0.112  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHH--CCCEEEEEeCChH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKL--KGCKVVGSTGSDD  200 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~--~G~~V~~~~~s~~  200 (356)
                      .+.+|||+||+|.+|..+++.+..  .|.+|++++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            468999999999999999988887  8999999997654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.15  E-value=0.005  Score=53.69  Aligned_cols=105  Identities=12%  Similarity=0.057  Sum_probs=66.7

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC----CceeecCChhhHHHHHH
Q 042784          154 VGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGY----DDAFNYNSEMSFDAALT  228 (356)
Q Consensus       154 ~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~----~~v~~~~~~~~~~~~i~  228 (356)
                      .++.+...--.+.+++|+|+ |++|.+++..+...|+ +|+++.++.++.+.+.++++.    ..+..+.. .++.+.+.
T Consensus       116 ~~l~~~~~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~-~~l~~~l~  193 (283)
T 3jyo_A          116 RGMEEGLPNAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA-RGIEDVIA  193 (283)
T ss_dssp             HHHHHHCTTCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS-TTHHHHHH
T ss_pred             HHHHHhCcCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH-HHHHHHHh
Confidence            34443332345889999997 9999999999999999 899999999888766545542    11222221 34555554


Q ss_pred             HHCCCCceEEEECCchhhH-----HHHHHhcccCCEEEEEec
Q 042784          229 KYFPNGIDVYLDNVGGKML-----EAVLNHVNVHARIILCGM  265 (356)
Q Consensus       229 ~~~~~~~d~vld~~g~~~~-----~~~~~~l~~~G~~v~~g~  265 (356)
                      +     +|+||+|+.....     ......++++..++.+-.
T Consensus       194 ~-----~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY  230 (283)
T 3jyo_A          194 A-----ADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVY  230 (283)
T ss_dssp             H-----SSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCC
T ss_pred             c-----CCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecC
Confidence            4     8999999863211     111344566665555543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.15  E-value=0.0035  Score=55.17  Aligned_cols=93  Identities=13%  Similarity=0.058  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .+.+++|+|+ |++|.+++..+...|+ +|++..++.++.+.+.++++..  .+.+.   .++.+.+     .++|+||+
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~---~~~~~~~-----~~aDivIn  210 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSL---AEAETRL-----AEYDIIIN  210 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECH---HHHHHTG-----GGCSEEEE
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeH---HHHHhhh-----ccCCEEEE
Confidence            5789999997 9999999999999998 9999999998877766577652  23322   1222222     35899999


Q ss_pred             CCchhhH------HHHHHhcccCCEEEEEec
Q 042784          241 NVGGKML------EAVLNHVNVHARIILCGM  265 (356)
Q Consensus       241 ~~g~~~~------~~~~~~l~~~G~~v~~g~  265 (356)
                      |++....      ......++++..++.+..
T Consensus       211 ~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          211 TTSVGMHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             CSCTTCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            9986421      011235667777777655

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.14  E-value=0.0011  Score=56.27  Aligned_cols=102  Identities=11%  Similarity=0.101  Sum_probs=70.3

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHC---
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYF---  231 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~---  231 (356)
                      .+..++++||-.|+ | .|..+..+++..  +.+|++++.+++..+.+++.+   |....+.... .+..+.+.++.   
T Consensus        56 ~~~~~~~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~-~d~~~~~~~~~~~~  132 (239)
T 2hnk_A           56 TKISGAKRIIEIGT-F-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL-GSALETLQVLIDSK  132 (239)
T ss_dssp             HHHHTCSEEEEECC-T-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE-SCHHHHHHHHHHCS
T ss_pred             HHhhCcCEEEEEeC-C-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE-CCHHHHHHHHHhhc
Confidence            34567899999994 4 689999999987  569999999998888877432   4432122211 23333333221   


Q ss_pred             -----------C-CCceEEEECCchh----hHHHHHHhcccCCEEEEEe
Q 042784          232 -----------P-NGIDVYLDNVGGK----MLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       232 -----------~-~~~d~vld~~g~~----~~~~~~~~l~~~G~~v~~g  264 (356)
                                 + +.||+|+......    .+..+.+.|+++|.++...
T Consensus       133 ~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          133 SAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             SCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                       1 5699999876543    6688889999999998643

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.14  E-value=0.0018  Score=56.13  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHHH---hCCC-ce--eecCChhhHHHHHHHHC--CC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKEE---FGYD-DA--FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~i~~~~--~~  233 (356)
                      ..+.++||+||+|++|.++++.+...|++|+++ .++.++.+.+.++   .+.. ..  .|..+..++.+.+.++.  -+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            457899999999999999999999999998776 6666665554433   2332 11  24444344444333332  14


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|++|.+.|
T Consensus       104 ~id~li~nAg  113 (272)
T 4e3z_A          104 RLDGLVNNAG  113 (272)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999887

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.12  E-value=0.0067  Score=54.44  Aligned_cols=74  Identities=14%  Similarity=0.045  Sum_probs=50.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh----HHHHHHHHHh------CCCce--eecCChhhHHHHHHHHCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD----DNVKLLKEEF------GYDDA--FNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~----~~~~~~~~~~------g~~~v--~~~~~~~~~~~~i~~~~~  232 (356)
                      +.+|||+||+|.+|..+++.+...|.+|++++++.    +....++ ..      ....+  .|..+...    +.++. 
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~----~~~~~-   98 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVK-TLVSTEQWSRFCFIEGDIRDLTT----CEQVM-   98 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHH-HTSCHHHHTTEEEEECCTTCHHH----HHHHT-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhh-hccccccCCceEEEEccCCCHHH----HHHHh-
Confidence            67999999999999999999999999999999854    3334443 21      11112  23333222    33322 


Q ss_pred             CCceEEEECCch
Q 042784          233 NGIDVYLDNVGG  244 (356)
Q Consensus       233 ~~~d~vld~~g~  244 (356)
                      .++|+||.+++.
T Consensus        99 ~~~d~Vih~A~~  110 (351)
T 3ruf_A           99 KGVDHVLHQAAL  110 (351)
T ss_dssp             TTCSEEEECCCC
T ss_pred             cCCCEEEECCcc
Confidence            269999999873

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.12  E-value=0.00075  Score=61.97  Aligned_cols=92  Identities=15%  Similarity=0.198  Sum_probs=70.5

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      ..-.|.+|+|.|. |.+|..+++.++.+|++|+++++++.+...+. ..|.. +      .++.+.+     ..+|+|+.
T Consensus       207 ~~L~GktVgIiG~-G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-~~G~~-~------~sL~eal-----~~ADVVil  272 (436)
T 3h9u_A          207 VMIAGKTACVCGY-GDVGKGCAAALRGFGARVVVTEVDPINALQAA-MEGYQ-V------LLVEDVV-----EEAHIFVT  272 (436)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-E------CCHHHHT-----TTCSEEEE
T ss_pred             CcccCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-HhCCe-e------cCHHHHH-----hhCCEEEE
Confidence            3346999999996 99999999999999999999998887776666 56653 1      1344433     24899999


Q ss_pred             CCchh-hH-HHHHHhcccCCEEEEEecc
Q 042784          241 NVGGK-ML-EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       241 ~~g~~-~~-~~~~~~l~~~G~~v~~g~~  266 (356)
                      +.+.. .+ ...++.|+++..++.+|..
T Consensus       273 t~gt~~iI~~e~l~~MK~gAIVINvgRg  300 (436)
T 3h9u_A          273 TTGNDDIITSEHFPRMRDDAIVCNIGHF  300 (436)
T ss_dssp             CSSCSCSBCTTTGGGCCTTEEEEECSSS
T ss_pred             CCCCcCccCHHHHhhcCCCcEEEEeCCC
Confidence            88864 22 3567889999999888753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.11  E-value=0.011  Score=45.17  Aligned_cols=76  Identities=18%  Similarity=0.177  Sum_probs=53.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee-ecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF-NYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~-~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +.+|+|.|+ |.+|...++.+...|.+|+++++++++.+.+++.+|...+. |..+ .   +.+.+..-.++|+|+.|++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~-~---~~l~~~~~~~~d~vi~~~~   78 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTK-I---KTLEDAGIEDADMYIAVTG   78 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTS-H---HHHHHTTTTTCSEEEECCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCC-H---HHHHHcCcccCCEEEEeeC
Confidence            357999997 99999999999889999999999988888776445653221 2222 1   1233222246999999998


Q ss_pred             hh
Q 042784          244 GK  245 (356)
Q Consensus       244 ~~  245 (356)
                      ..
T Consensus        79 ~~   80 (140)
T 1lss_A           79 KE   80 (140)
T ss_dssp             CH
T ss_pred             Cc
Confidence            75

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.11  E-value=0.00067  Score=58.37  Aligned_cols=77  Identities=17%  Similarity=0.224  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC-CCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF-PNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~-~~~~d~vl  239 (356)
                      .++++||+||++++|.++++.+...|++|++++++.++  ..+ +++...   ..|..+..++.+.+.... -+++|+++
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~--~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED--VVA-DLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHH--HHH-HTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHH--HHH-hcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            37899999999999999998888889999999875443  233 555431   124444333333222211 25799999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      ++.|
T Consensus        85 ~nAg   88 (257)
T 3tl3_A           85 NCAG   88 (257)
T ss_dssp             ECGG
T ss_pred             ECCC
Confidence            9998

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.11  E-value=0.0024  Score=56.69  Aligned_cols=104  Identities=12%  Similarity=0.100  Sum_probs=72.1

Q ss_pred             HHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHC
Q 042784          155 GIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       155 ~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      .+.....+.++++||-.|+ |. |..+..+++..|++|++++.+++..+.+++.+   |....+.... .++    .++ 
T Consensus        81 ~~~~~~~~~~~~~vLDiGc-G~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~----~~~-  152 (318)
T 2fk8_A           81 LNLDKLDLKPGMTLLDIGC-GW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL-QGW----EDF-  152 (318)
T ss_dssp             HHHTTSCCCTTCEEEEESC-TT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE-SCG----GGC-
T ss_pred             HHHHhcCCCCcCEEEEEcc-cc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-CCh----HHC-
Confidence            3444567789999999995 54 88888999888999999999999888887432   3221121111 111    112 


Q ss_pred             CCCceEEEEC-----Cch----hhHHHHHHhcccCCEEEEEecc
Q 042784          232 PNGIDVYLDN-----VGG----KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       232 ~~~~d~vld~-----~g~----~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ++.||+|+..     .+.    ..+..+.+.|+|+|+++.....
T Consensus       153 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          153 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            2569999976     432    2678888999999999875543

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=97.11  E-value=0.0043  Score=55.39  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=51.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH--HHHHHHhCC-Cc----eeecCChhhHHHHHHHHCCCCceE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV--KLLKEEFGY-DD----AFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~--~~~~~~~g~-~~----v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      +.+|||+||+|.+|..+++.+...|.+|+++++++++.  +.++ .++. ..    ..|..+..++.+.+...   ++|+
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~~d~   78 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLK-ELGIENDVKIIHMDLLEFSNIIRTIEKV---QPDE   78 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHH-HTTCTTTEEECCCCTTCHHHHHHHHHHH---CCSE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHh-hccccCceeEEECCCCCHHHHHHHHHhc---CCCE
Confidence            57899999999999999988888899999999876542  2333 3321 11    12444434444444432   5799


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ||.++|
T Consensus        79 vih~A~   84 (345)
T 2z1m_A           79 VYNLAA   84 (345)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999987

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.11  E-value=0.00084  Score=59.88  Aligned_cols=81  Identities=21%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC----------hHHHHHHHH---HhCCCce---eecCChhhHHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS----------DDNVKLLKE---EFGYDDA---FNYNSEMSFDAA  226 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s----------~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~  226 (356)
                      -.|+++||+||+|++|.++++.+...|++|++++++          .++.+.+.+   +.|....   .|..+..++.+.
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            357899999999999999999888899999999876          444433332   3343211   233443333333


Q ss_pred             HHHHC--CCCceEEEECCc
Q 042784          227 LTKYF--PNGIDVYLDNVG  243 (356)
Q Consensus       227 i~~~~--~~~~d~vld~~g  243 (356)
                      +.++.  -+++|+++.+.|
T Consensus       105 ~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCC
T ss_pred             HHHHHHHcCCCCEEEECCC
Confidence            33322  146999999987

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.09  E-value=0.0019  Score=55.94  Aligned_cols=81  Identities=23%  Similarity=0.293  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHHH---hCCC-ce--eecCChhhHHHHHHHHC--CC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKEE---FGYD-DA--FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~i~~~~--~~  233 (356)
                      ..+.++||+||+|++|.++++.+...|++|++++ ++.+..+...+.   .+.. ..  .|..+..++.+.+.++.  -+
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999999999989999999988 555544433222   2322 11  24444333333333322  14


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|++|.+.|
T Consensus       103 ~id~li~nAg  112 (269)
T 3gk3_A          103 KVDVLINNAG  112 (269)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.08  E-value=0.0017  Score=55.64  Aligned_cols=102  Identities=13%  Similarity=0.071  Sum_probs=71.7

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHh----CCCceeecCChhhHHHHHHHHC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEF----GYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~----g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      ....+.++++||-.|+ | .|..+..+++..  +.+|++++.+++..+.+++.+    |...+ .... .++.+.  .+.
T Consensus        90 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v-~~~~-~d~~~~--~~~  163 (258)
T 2pwy_A           90 TLLDLAPGMRVLEAGT-G-SGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENV-RFHL-GKLEEA--ELE  163 (258)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCE-EEEE-SCGGGC--CCC
T ss_pred             HHcCCCCCCEEEEECC-C-cCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCE-EEEE-Cchhhc--CCC
Confidence            4567899999999995 5 488999999985  469999999999888887433    53322 1111 121111  112


Q ss_pred             CCCceEEEECCch--hhHHHHHHhcccCCEEEEEec
Q 042784          232 PNGIDVYLDNVGG--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       232 ~~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .+.+|+|+.....  ..+..+.+.|+++|+++.+..
T Consensus       164 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          164 EAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            3469999976654  478899999999999987643

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.07  E-value=0.0022  Score=54.81  Aligned_cols=102  Identities=11%  Similarity=0.056  Sum_probs=70.2

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHCC-CC
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYFP-NG  234 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~~-~~  234 (356)
                      ...++.+||-.|+  +.|..++.+++..  +.+|++++.+++..+.+++.+   |....+.... .+..+.+..+.+ +.
T Consensus        60 ~~~~~~~VLdiG~--G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~~~~l~~~~~~~~  136 (248)
T 3tfw_A           60 RLTQAKRILEIGT--LGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE-GPALQSLESLGECPA  136 (248)
T ss_dssp             HHHTCSEEEEECC--TTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE-SCHHHHHHTCCSCCC
T ss_pred             hhcCCCEEEEecC--CchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-cCHHHHHHhcCCCCC
Confidence            3567899999994  4588889999887  469999999999888877432   5432222221 344444544432 37


Q ss_pred             ceEEEECCch----hhHHHHHHhcccCCEEEEEec
Q 042784          235 IDVYLDNVGG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       235 ~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ||+|+-....    ..+..+.+.|+|+|.++.-..
T Consensus       137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          137 FDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             eEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            9999854333    267888999999998886543

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.05  E-value=0.0014  Score=57.01  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCc-e--eecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDD-A--FNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~-v--~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .+.++||+||+|++|.+++..+...|++|+++++++++.+.+.+   ..+... .  .|..+..++.+.+.++.  -+.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i  112 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTI  112 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            47899999999999999988888889999999987665443332   234321 1  24444344444443321  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |++|.+.|
T Consensus       113 d~li~~Ag  120 (279)
T 3ctm_A          113 DVFVANAG  120 (279)
T ss_dssp             SEEEECGG
T ss_pred             CEEEECCc
Confidence            99999887

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.05  E-value=0.0012  Score=57.53  Aligned_cols=95  Identities=16%  Similarity=0.243  Sum_probs=60.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|||+||+|.+|...++.+...  |.+|+++++++++.+.+. ..+... ..|..+..++.+.+     .++|+||.+.+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~-----~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA-AQGITVRQADYGDEAALTSAL-----QGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH-HTTCEEEECCTTCHHHHHHHT-----TTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh-cCCCeEEEcCCCCHHHHHHHH-----hCCCEEEEeCC
Confidence            4899999999999999888777  899999998877665554 334431 12444423333222     35899999987


Q ss_pred             hh------hHHHHHHhccc-C-CEEEEEeccc
Q 042784          244 GK------MLEAVLNHVNV-H-ARIILCGMIS  267 (356)
Q Consensus       244 ~~------~~~~~~~~l~~-~-G~~v~~g~~~  267 (356)
                      ..      .....++.++. + ++++.++...
T Consensus        75 ~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           75 SEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             -------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            41      23334444432 3 5888877644

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=97.04  E-value=0.0028  Score=58.18  Aligned_cols=85  Identities=16%  Similarity=0.146  Sum_probs=56.4

Q ss_pred             hCCC-CCCCEEEEEcCCChHHHHHHHHHHH-CCCEEEEEeCChHH----------------HHHHHHHhCCCce---eec
Q 042784          159 LGQP-KSGSNVFVSAAAGGVGMFAGQLAKL-KGCKVVGSTGSDDN----------------VKLLKEEFGYDDA---FNY  217 (356)
Q Consensus       159 ~~~~-~~g~~VlV~g~~g~vG~~~i~la~~-~G~~V~~~~~s~~~----------------~~~~~~~~g~~~v---~~~  217 (356)
                      ..++ +.++++||+||++|+|++++..+.. .|++|++++++.+.                .+.++ +.|....   .|.
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~-~~G~~a~~i~~Dv  132 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAK-AAGLYSKSINGDA  132 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHH-HTTCCEEEEESCT
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHH-hcCCcEEEEEecC
Confidence            3555 4688999999999999998877777 89999998865432                13344 5565322   244


Q ss_pred             CChhh---HHHHHHHHCCCCceEEEECCch
Q 042784          218 NSEMS---FDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       218 ~~~~~---~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      .+...   +.+.+.+..++++|+++++.|.
T Consensus       133 td~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          133 FSDAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             TSHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            44333   3334444443679999999874

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.04  E-value=0.0014  Score=58.65  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=52.7

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCC-ce---eecCChhhHHHHHHHHCCC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF----GYD-DA---FNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~----g~~-~v---~~~~~~~~~~~~i~~~~~~  233 (356)
                      ...+.+|||+||+|.+|..+++.+...|.+|++++++.++.+.+.+.+    +.. ..   .|..+...    +.++. .
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~----~~~~~-~   82 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGA----YDEVI-K   82 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTT----TTTTT-T
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHH----HHHHH-c
Confidence            345789999999999999999888888999999999887765554222    211 11   23333122    22221 2


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+||.+++
T Consensus        83 ~~d~vih~A~   92 (342)
T 1y1p_A           83 GAAGVAHIAS   92 (342)
T ss_dssp             TCSEEEECCC
T ss_pred             CCCEEEEeCC
Confidence            6999999986

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.03  E-value=0.0017  Score=55.91  Aligned_cols=80  Identities=18%  Similarity=0.231  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.+++|+||+|++|.++++.+...|++|++++++. +..+.+++.+   +..   ...|..+..++.+.+.++.  -++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            368999999999999999999989999999886654 3444444222   211   1234444344444444332  146


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|++|.+.|
T Consensus        86 id~lv~~Ag   94 (264)
T 3i4f_A           86 IDFLINNAG   94 (264)
T ss_dssp             CCEEECCCC
T ss_pred             CCEEEECCc
Confidence            999999998

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.03  E-value=0.0017  Score=53.59  Aligned_cols=73  Identities=23%  Similarity=0.313  Sum_probs=51.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .++||+|++|++|..+++.+...  +|+++++++++.+.+.++++. ..  .|..+..++.+.+.+  .+++|+++.+.|
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~--~~~id~vi~~ag   75 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEE--AGPLDLLVHAVG   75 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHH--HCSEEEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHh--cCCCCEEEECCC
Confidence            36899999999999887766555  999999998887776645543 22  244443444444443  247999999987

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.02  E-value=0.0027  Score=54.36  Aligned_cols=81  Identities=27%  Similarity=0.280  Sum_probs=51.7

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHH----HHHHHHhCCCc-e--eecCChhhHHHHHHHHC--
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNV----KLLKEEFGYDD-A--FNYNSEMSFDAALTKYF--  231 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~----~~~~~~~g~~~-v--~~~~~~~~~~~~i~~~~--  231 (356)
                      ..++++|||+||+|++|.++++.+...|++|++++ ++.++.    +.++ +.+... .  .|..+..++.+.+.++.  
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK-ALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHH-HTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH-hcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            35688999999999999999998888999999887 433332    2233 344331 1  23444333443333322  


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                      -+++|+++.+.|
T Consensus        89 ~g~id~lv~~Ag  100 (256)
T 3ezl_A           89 VGEIDVLVNNAG  100 (256)
T ss_dssp             TCCEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            246999999987

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.00  E-value=0.001  Score=57.47  Aligned_cols=81  Identities=11%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHH--HhCCC-ce--eecCChhhHHHHHHH---HC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKG---CKVVGSTGSDDNVKLLKE--EFGYD-DA--FNYNSEMSFDAALTK---YF  231 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G---~~V~~~~~s~~~~~~~~~--~~g~~-~v--~~~~~~~~~~~~i~~---~~  231 (356)
                      -.+.++||+||+|++|.++++.+...|   ++|++++++.++.+.+++  +.+.. .+  .|..+..++.+.+.+   ..
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence            346799999999999999999888889   899999988765443331  11322 11  244443344443333   22


Q ss_pred             CC-CceEEEECCc
Q 042784          232 PN-GIDVYLDNVG  243 (356)
Q Consensus       232 ~~-~~d~vld~~g  243 (356)
                      +. ++|++|.+.|
T Consensus        99 g~~~id~li~~Ag  111 (267)
T 1sny_A           99 KDQGLNVLFNNAG  111 (267)
T ss_dssp             GGGCCSEEEECCC
T ss_pred             CCCCccEEEECCC
Confidence            32 6999999987

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.00  E-value=0.0019  Score=54.66  Aligned_cols=101  Identities=12%  Similarity=0.080  Sum_probs=69.3

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC--C--
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF--P--  232 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~--~--  232 (356)
                      ..++++||-.|+  +.|..++.+++..  +.+|++++.+++..+.+++.   .|....+.... .+..+.+.++.  +  
T Consensus        70 ~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           70 LTGAKQVLEIGV--FRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRL-GPALATLEQLTQGKPL  146 (232)
T ss_dssp             HHTCCEEEEECC--TTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE-SCHHHHHHHHHTSSSC
T ss_pred             hcCCCEEEEecC--CCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-cCHHHHHHHHHhcCCC
Confidence            456789999994  4889999999987  46999999999888877643   35432222221 33444444442  2  


Q ss_pred             CCceEEEECCch----hhHHHHHHhcccCCEEEEEec
Q 042784          233 NGIDVYLDNVGG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 ~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +.||+|+-....    ..+..+.+.|+++|.++.-..
T Consensus       147 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          147 PEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             CCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            569999854332    368889999999999886443

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.98  E-value=0.00098  Score=57.25  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC--CCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF--PNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~--~~~~d~vld~  241 (356)
                      .+.++||+||+|++|.++++.+...|++|+++++++++.+.+.     ....|..+..++.+.+.+..  -+.+|+++.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-----~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~n   94 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFL-----AVKCDITDTEQVEQAYKEIEETHGPVEVLIAN   94 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE-----EEECCTTSHHHHHHHHHHHHHHTCSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhccce-----EEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            3689999999999999999999999999999998765432110     01234444344444333321  2469999998


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        95 Ag   96 (253)
T 2nm0_A           95 AG   96 (253)
T ss_dssp             CS
T ss_pred             CC
Confidence            77

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.97  E-value=0.00042  Score=59.84  Aligned_cols=76  Identities=17%  Similarity=0.134  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .++++||+||+|++|.++++.+...|++|++++++.++....    ... ...|..+..++.+.+.+..  -+++|+++.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~  102 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADP----DIHTVAGDISKPETADRIVREGIERFGRIDSLVN  102 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSST----TEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccC----ceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            478999999999999999999999999999999875542211    111 1124444334433333321  146999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus       103 nAg  105 (260)
T 3un1_A          103 NAG  105 (260)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.97  E-value=0.00022  Score=61.83  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC--CCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF--PNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~--~~~~d~vld~  241 (356)
                      .|+++||+||+|++|.++++.+...|++|++++++.++.+... .+    ..|..+..+..+.+.++.  -+++|+++.+
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~-~~----~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnn  101 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADL-HL----PGDLREAAYADGLPGAVAAGLGRLDIVVNN  101 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSE-EC----CCCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhh-cc----CcCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            4789999999999999999999899999999987655432211 11    123333233332222221  1469999999


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus       102 Ag  103 (266)
T 3uxy_A          102 AG  103 (266)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.97  E-value=0.0036  Score=50.09  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHH---hCCC-ceeecCChhhHHHHHHHHCCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEE---FGYD-DAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ...+.++++||-.|+ | .|..+..+++.. +.+|++++.+++..+.+++.   .|.. .++...   +..+.+.. ..+
T Consensus        20 ~~~~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~---d~~~~~~~-~~~   93 (178)
T 3hm2_A           20 ALAPKPHETLWDIGG-G-SGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQ---GAPRAFDD-VPD   93 (178)
T ss_dssp             HHCCCTTEEEEEEST-T-TTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEEC---CTTGGGGG-CCS
T ss_pred             HhcccCCCeEEEeCC-C-CCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEec---chHhhhhc-cCC
Confidence            445788999999995 5 489999999887 55999999999888887742   3443 232111   11111211 115


Q ss_pred             CceEEEECCch---hhHHHHHHhcccCCEEEEEec
Q 042784          234 GIDVYLDNVGG---KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       234 ~~d~vld~~g~---~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .+|+|+.....   ..+..+.+.|+++|+++....
T Consensus        94 ~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           94 NPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             CCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            69999976654   378899999999999987654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.97  E-value=0.004  Score=54.82  Aligned_cols=104  Identities=12%  Similarity=0.061  Sum_probs=72.7

Q ss_pred             HHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC
Q 042784          155 GIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       155 ~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      .+.....++++++||-.|+ | .|..+..+++..|++|++++.+++..+.+++.   .|....+.... .++    .++ 
T Consensus        63 ~~~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~----~~~-  134 (302)
T 3hem_A           63 LALDKLNLEPGMTLLDIGC-G-WGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI-QGW----EEF-  134 (302)
T ss_dssp             HHHHTTCCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE-CCG----GGC-
T ss_pred             HHHHHcCCCCcCEEEEeec-c-CcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-CCH----HHc-
Confidence            3445667899999999995 4 58889999999889999999999988887743   23321121111 122    122 


Q ss_pred             CCCceEEEECCc----------------hhhHHHHHHhcccCCEEEEEecc
Q 042784          232 PNGIDVYLDNVG----------------GKMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       232 ~~~~d~vld~~g----------------~~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      .+.+|+|+....                ...+..+.+.|+|+|+++.....
T Consensus       135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            467999987432                13677888999999999876553

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.96  E-value=0.002  Score=56.03  Aligned_cols=95  Identities=19%  Similarity=0.215  Sum_probs=61.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|||+||+|.+|...++.+...  |.+|+++++++++.+.+. ..+... ..|..+..++.+.+     .++|+||.+.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~-~~~~~~~~~D~~d~~~l~~~~-----~~~d~vi~~a~   75 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA-DQGVEVRHGDYNQPESLQKAF-----AGVSKLLFISG   75 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH-HTTCEEEECCTTCHHHHHHHT-----TTCSEEEECCC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh-hcCCeEEEeccCCHHHHHHHH-----hcCCEEEEcCC
Confidence            6999999999999999888777  899999998877766554 334431 12444423333322     25899999987


Q ss_pred             hh--------hHHHHHHhcccC--CEEEEEeccc
Q 042784          244 GK--------MLEAVLNHVNVH--ARIILCGMIS  267 (356)
Q Consensus       244 ~~--------~~~~~~~~l~~~--G~~v~~g~~~  267 (356)
                      ..        .....++.++..  ++++.++...
T Consensus        76 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           76 PHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             CCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            31        223334444333  4888877643

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.96  E-value=0.019  Score=51.42  Aligned_cols=137  Identities=13%  Similarity=0.218  Sum_probs=80.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHH-H-CCCEEEE-EeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAK-L-KGCKVVG-STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~-~-~G~~V~~-~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -+|.|.|+ |.+|...++.++ . .++++++ .++++++.+.+.+++|...++     .++.+.+.   ...+|+|+.|+
T Consensus         9 ~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~-----~~~~~~l~---~~~~D~V~i~t   79 (346)
T 3cea_A            9 LRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTY-----TNYKDMID---TENIDAIFIVA   79 (346)
T ss_dssp             EEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEE-----SCHHHHHT---TSCCSEEEECS
T ss_pred             ceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCccc-----CCHHHHhc---CCCCCEEEEeC
Confidence            47999997 999998877776 4 4677654 566777776665577875343     23333332   24699999999


Q ss_pred             chh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh-hcc-ceEEEEEecccccchHHHHHHHHHHHHHcCC
Q 042784          243 GGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM-IGK-EVKMEGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       243 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      ... +.+.+..+++.+.+ +++..+....     ......+... -.+ ++.+......    ++...++.+.+++.+|.
T Consensus        80 p~~~h~~~~~~al~~G~~-v~~eKp~~~~-----~~~~~~l~~~a~~~~~~~~~~~~~~----r~~p~~~~~~~~i~~g~  149 (346)
T 3cea_A           80 PTPFHPEMTIYAMNAGLN-VFCEKPLGLD-----FNEVDEMAKVIKSHPNQIFQSGFMR----RYDDSYRYAKKIVDNGD  149 (346)
T ss_dssp             CGGGHHHHHHHHHHTTCE-EEECSCCCSC-----HHHHHHHHHHHHTCTTSCEECCCGG----GTCHHHHHHHHHHHTTT
T ss_pred             ChHhHHHHHHHHHHCCCE-EEEcCCCCCC-----HHHHHHHHHHHHhCCCCeEEEeccc----ccCHHHHHHHHHHHcCC
Confidence            875 67777788887654 4454332210     0000111111 123 4433221111    22245778888898887


Q ss_pred             ee
Q 042784          320 IR  321 (356)
Q Consensus       320 i~  321 (356)
                      +-
T Consensus       150 iG  151 (346)
T 3cea_A          150 IG  151 (346)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.96  E-value=0.0037  Score=52.99  Aligned_cols=101  Identities=12%  Similarity=0.005  Sum_probs=68.0

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC----
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF----  231 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~----  231 (356)
                      ...++.+||-.|  .+.|..++.+++.+  +.+|++++.+++..+.+++.   .|....+.... .+..+.+..+.    
T Consensus        67 ~~~~~~~VLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~-gda~~~l~~l~~~~~  143 (237)
T 3c3y_A           67 KLVNAKKTIEVG--VFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE-SDAMLALDNLLQGQE  143 (237)
T ss_dssp             HHTTCCEEEEEC--CTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE-SCHHHHHHHHHHSTT
T ss_pred             HhhCCCEEEEeC--CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-cCHHHHHHHHHhccC
Confidence            345678999998  45788888899886  56999999999988887643   35432222211 23333333331    


Q ss_pred             -CCCceEEEECCch----hhHHHHHHhcccCCEEEEEe
Q 042784          232 -PNGIDVYLDNVGG----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       232 -~~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g  264 (356)
                       .+.||+|+-....    ..+..+.+.|+++|.++.-.
T Consensus       144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence             3569999865433    26788899999999987643

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.95  E-value=0.0035  Score=54.41  Aligned_cols=102  Identities=15%  Similarity=0.172  Sum_probs=71.1

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHh----C--CCceeecCChhhHHHHHHH
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEF----G--YDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~----g--~~~v~~~~~~~~~~~~i~~  229 (356)
                      ....+.++++||-.|+ | .|..+..+++..  +.+|++++.+++..+.+++.+    |  ...+ .... .++.+.  .
T Consensus        93 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v-~~~~-~d~~~~--~  166 (280)
T 1i9g_A           93 HEGDIFPGARVLEAGA-G-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW-RLVV-SDLADS--E  166 (280)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTE-EEEC-SCGGGC--C
T ss_pred             HHcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcE-EEEE-CchHhc--C
Confidence            4567899999999995 5 788889999875  459999999999888877432    4  2222 1111 121111  0


Q ss_pred             HCCCCceEEEECCch--hhHHHHHHhcccCCEEEEEec
Q 042784          230 YFPNGIDVYLDNVGG--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       230 ~~~~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +..+.+|+|+.....  ..+..+.+.|+++|.++.+..
T Consensus       167 ~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          167 LPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             CCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            113469999976554  478899999999999887654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.94  E-value=0.0074  Score=53.28  Aligned_cols=76  Identities=14%  Similarity=0.201  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCC---hHHHHHHHHHhCC----C-ceeecCChhhHHHHHHHHCCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGS---DDNVKLLKEEFGY----D-DAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s---~~~~~~~~~~~g~----~-~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      -.+.++||+|+ |++|.+++..+...|+ +|+++.++   .++.+.+.++++.    . .+.++.+...+.+.+.+    
T Consensus       146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~----  220 (312)
T 3t4e_A          146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS----  220 (312)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH----
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC----
Confidence            35889999997 9999999999999999 89999999   6666655434432    1 23333321112333433    


Q ss_pred             CceEEEECCch
Q 042784          234 GIDVYLDNVGG  244 (356)
Q Consensus       234 ~~d~vld~~g~  244 (356)
                       +|+||+|++.
T Consensus       221 -~DiIINaTp~  230 (312)
T 3t4e_A          221 -ADILTNGTKV  230 (312)
T ss_dssp             -CSEEEECSST
T ss_pred             -ceEEEECCcC
Confidence             8999999864

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.94  E-value=0.0025  Score=55.10  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHHH---hCCC-ce--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKEE---FGYD-DA--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .+.++||+||+|++|.++++.+...|++|++.. ++.++.+...++   .+.. .+  .|..+..++.+.+.++.  .++
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGA  104 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            368999999999999999999999999986654 555554433322   2322 12  24444344444343322  246


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       105 id~li~nAg  113 (267)
T 4iiu_A          105 WYGVVSNAG  113 (267)
T ss_dssp             CSEEEECCC
T ss_pred             ccEEEECCC
Confidence            999999987

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.94  E-value=0.0017  Score=53.05  Aligned_cols=97  Identities=12%  Similarity=0.072  Sum_probs=64.4

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC----------CEEEEEeCChHHHHHHHHHhCCCcee---ecCChhhHHH
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG----------CKVVGSTGSDDNVKLLKEEFGYDDAF---NYNSEMSFDA  225 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G----------~~V~~~~~s~~~~~~~~~~~g~~~v~---~~~~~~~~~~  225 (356)
                      ...++++++||-.|+ |. |..+..+++..|          .+|++++.++...      +.....+   |..+ ....+
T Consensus        17 ~~~~~~~~~vLDlGc-G~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~------~~~~~~~~~~d~~~-~~~~~   87 (196)
T 2nyu_A           17 HQILRPGLRVLDCGA-AP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP------LEGATFLCPADVTD-PRTSQ   87 (196)
T ss_dssp             HCCCCTTCEEEEETC-CS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC------CTTCEEECSCCTTS-HHHHH
T ss_pred             cCCCCCCCEEEEeCC-CC-CHHHHHHHHHhccccccccCCCceEEEEechhccc------CCCCeEEEeccCCC-HHHHH
Confidence            345788999999995 66 999999999986          7899999887421      1111122   2222 23444


Q ss_pred             HHHHHCC-CCceEEEE-----CCch-------------hhHHHHHHhcccCCEEEEEe
Q 042784          226 ALTKYFP-NGIDVYLD-----NVGG-------------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       226 ~i~~~~~-~~~d~vld-----~~g~-------------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      .+.+..+ +.||+|+.     +++.             ..+..+.+.|+|+|+++...
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            4444443 47999995     3332             34667889999999998653

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.93  E-value=0.002  Score=54.16  Aligned_cols=103  Identities=12%  Similarity=0.040  Sum_probs=70.0

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHC--C
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~--~  232 (356)
                      .+..++.+||-.|+ | .|..++.+++..  +.+|++++.+++..+.+++.+   |....+.... .+..+.+.++.  +
T Consensus        65 ~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~~~~~~~~~  141 (229)
T 2avd_A           65 ARLIQAKKALDLGT-F-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL-KPALETLDELLAAG  141 (229)
T ss_dssp             HHHTTCCEEEEECC-T-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE-SCHHHHHHHHHHTT
T ss_pred             HHhcCCCEEEEEcC-C-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE-cCHHHHHHHHHhcC
Confidence            33467889999994 4 888899999876  469999999998888777432   4422222221 23333333332  1


Q ss_pred             --CCceEEEECCch----hhHHHHHHhcccCCEEEEEec
Q 042784          233 --NGIDVYLDNVGG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 --~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                        +.+|+|+.....    ..+..+.+.|+++|.++....
T Consensus       142 ~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          142 EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence              569998865432    368889999999999887543

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.92  E-value=0.0024  Score=55.19  Aligned_cols=96  Identities=13%  Similarity=0.051  Sum_probs=68.1

Q ss_pred             cCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHH
Q 042784          145 LGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFD  224 (356)
Q Consensus       145 l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~  224 (356)
                      +||+...++..+.+...--.|.+++|.|.++.+|..+..++...|++|++..+..                     .++.
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------------------~~L~  198 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLS  198 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHH
Confidence            4555555555565444345799999999977799999999999999988765221                     2344


Q ss_pred             HHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          225 AALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +.++     .+|+||.++|.+.+ ---+.++++..++.+|...
T Consensus       199 ~~~~-----~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~~  235 (285)
T 3p2o_A          199 LYTR-----QADLIIVAAGCVNL-LRSDMVKEGVIVVDVGINR  235 (285)
T ss_dssp             HHHT-----TCSEEEECSSCTTC-BCGGGSCTTEEEEECCCEE
T ss_pred             HHhh-----cCCEEEECCCCCCc-CCHHHcCCCeEEEEeccCc
Confidence            4443     38999999997633 1235678988888998754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.92  E-value=0.017  Score=45.09  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=59.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHHh--CCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKEEF--GYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~~~--g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      ..+|+|.|+ |.+|...++.+...|.+|++++++ +++.+.+++.+  |.. ++.-+  ..-.+.+.+..=.++|+|+-+
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~-~i~gd--~~~~~~l~~a~i~~ad~vi~~   78 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNAD-VIPGD--SNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCE-EEESC--TTSHHHHHHHTTTTCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCe-EEEcC--CCCHHHHHHcChhhCCEEEEe
Confidence            467999997 999999999999999999999986 46665555333  332 33221  111223443322469999999


Q ss_pred             CchhhH----HHHHHhcccCCEEEE
Q 042784          242 VGGKML----EAVLNHVNVHARIIL  262 (356)
Q Consensus       242 ~g~~~~----~~~~~~l~~~G~~v~  262 (356)
                      +++...    ....+.+.+..+++.
T Consensus        79 ~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           79 SDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             SSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             cCChHHHHHHHHHHHHHCCCCEEEE
Confidence            987522    233344445556654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.92  E-value=0.0022  Score=53.08  Aligned_cols=99  Identities=12%  Similarity=0.046  Sum_probs=67.7

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      +...++++++||-.|+ | .|..+..+++. +.+|++++.+++..+.+++.   +|...+ .... .+..+...  ..+.
T Consensus        71 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~-~d~~~~~~--~~~~  143 (210)
T 3lbf_A           71 ELLELTPQSRVLEIGT-G-SGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNV-STRH-GDGWQGWQ--ARAP  143 (210)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE-SCGGGCCG--GGCC
T ss_pred             HhcCCCCCCEEEEEcC-C-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCce-EEEE-CCcccCCc--cCCC
Confidence            4567889999999995 5 58888888888 78999999999988887743   243321 1110 11111111  1257


Q ss_pred             ceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          235 IDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       235 ~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      ||+|+.+.... ....+.+.|+++|+++..
T Consensus       144 ~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          144 FDAIIVTAAPPEIPTALMTQLDEGGILVLP  173 (210)
T ss_dssp             EEEEEESSBCSSCCTHHHHTEEEEEEEEEE
T ss_pred             ccEEEEccchhhhhHHHHHhcccCcEEEEE
Confidence            99999876543 335678899999998864

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.92  E-value=0.0026  Score=52.83  Aligned_cols=100  Identities=17%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      +...+.++++||-.|+ | .|..+..+++..|  .+|++++.+++..+.+++.   .|...+ .... .+....+.  ..
T Consensus        71 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~-~d~~~~~~--~~  144 (215)
T 2yxe_A           71 ELLDLKPGMKVLEIGT-G-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNV-IVIV-GDGTLGYE--PL  144 (215)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTE-EEEE-SCGGGCCG--GG
T ss_pred             HhhCCCCCCEEEEECC-C-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEE-CCcccCCC--CC
Confidence            3567889999999995 5 5888999999886  6999999999888877643   343322 1111 11111111  12


Q ss_pred             CCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          233 NGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       233 ~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      +.+|+|+.+.... ....+.+.|+++|+++..
T Consensus       145 ~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          145 APYDRIYTTAAGPKIPEPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             CCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             CCeeEEEECCchHHHHHHHHHHcCCCcEEEEE
Confidence            4699999876654 446788999999998865

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.92  E-value=0.0022  Score=57.36  Aligned_cols=77  Identities=13%  Similarity=0.141  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH----HHHHHHhCCC-ce--eecCChhhHHHHHHHHCCCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV----KLLKEEFGYD-DA--FNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~----~~~~~~~g~~-~v--~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      .+.+|||+||+|.+|..+++.+...|++|++++++.++.    +.+.+..+.. ..  .|..+..++.+.+.+   .++|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA---HPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH---SCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc---cCCc
Confidence            357899999999999999999999999999998765432    2222122322 12  244443444444443   4699


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +||++.|
T Consensus        81 ~vih~A~   87 (341)
T 3enk_A           81 AAIHFAA   87 (341)
T ss_dssp             EEEECCC
T ss_pred             EEEECcc
Confidence            9999987

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.91  E-value=0.003  Score=54.56  Aligned_cols=97  Identities=18%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+...++..+.+..---.|.+++|.|.++.+|..+.+++...|++|++..+.                    . .++
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------------t-~~L  198 (285)
T 3l07_A          140 LESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------------T-TDL  198 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------------C-SSH
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------------c-hhH
Confidence            3455555555556544433579999999986679999999999999998766421                    1 334


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.++     .+|+||.++|.+.+ ---..++++..++.+|...
T Consensus       199 ~~~~~-----~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  236 (285)
T 3l07_A          199 KSHTT-----KADILIVAVGKPNF-ITADMVKEGAVVIDVGINH  236 (285)
T ss_dssp             HHHHT-----TCSEEEECCCCTTC-BCGGGSCTTCEEEECCCEE
T ss_pred             HHhcc-----cCCEEEECCCCCCC-CCHHHcCCCcEEEEecccC
Confidence            44443     38999999997633 1235679999999988754

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.91  E-value=0.0016  Score=63.39  Aligned_cols=80  Identities=23%  Similarity=0.330  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC---------ChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG---------SDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~---------s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      .|+++||+||++++|.++++.+...|++|+++++         +.++.+.+.+   ..+...+.|..+..+..+.+.+..
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~   97 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI   97 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            4789999999999999999988889999999876         3333333222   345555667666455555454433


Q ss_pred             C--CCceEEEECCc
Q 042784          232 P--NGIDVYLDNVG  243 (356)
Q Consensus       232 ~--~~~d~vld~~g  243 (356)
                      .  +.+|++|++.|
T Consensus        98 ~~~g~iDiLVnnAG  111 (613)
T 3oml_A           98 KAFGRVDILVNNAG  111 (613)
T ss_dssp             -------CEECCCC
T ss_pred             HHCCCCcEEEECCC
Confidence            2  46999999987

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=96.90  E-value=0.0038  Score=58.42  Aligned_cols=80  Identities=20%  Similarity=0.356  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHHhCCCc-eeecCChhhHHH---HHHHHCCCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD--NVKLLKEEFGYDD-AFNYNSEMSFDA---ALTKYFPNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~--~~~~~~~~~g~~~-v~~~~~~~~~~~---~i~~~~~~~~d~  237 (356)
                      ++.++||+|++|++|.++++.+...|++|++++++..  ..+...++.+... ..|..+..++.+   .+.+..++.+|+
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~  291 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDI  291 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCSE
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCceE
Confidence            5789999999999999998888888999999887543  2333332555431 224444333333   333334445999


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      +|++.|
T Consensus       292 lV~nAG  297 (454)
T 3u0b_A          292 LVNNAG  297 (454)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999987

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.90  E-value=0.0056  Score=52.29  Aligned_cols=100  Identities=13%  Similarity=0.043  Sum_probs=67.9

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC-----
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF-----  231 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~-----  231 (356)
                      ..++.+||-.|  .+.|..++.+++.+  +.+|++++.+++..+.+++.   .|....+.... .+..+.+..+.     
T Consensus        77 ~~~~~~VLeiG--~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~-gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           77 LINAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE-GPALPVLDEMIKDEKN  153 (247)
T ss_dssp             HTTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE-SCHHHHHHHHHHSGGG
T ss_pred             hhCcCEEEEeC--CCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHhccCC
Confidence            45678999998  56788899999987  57999999999888877643   34422222211 23333333331     


Q ss_pred             CCCceEEEECCch----hhHHHHHHhcccCCEEEEEe
Q 042784          232 PNGIDVYLDNVGG----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       232 ~~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g  264 (356)
                      .+.||+|+-....    ..+..+.+.|+++|.++.-.
T Consensus       154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence            3569999854432    36788999999999988643

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.88  E-value=0.0038  Score=52.22  Aligned_cols=102  Identities=16%  Similarity=0.076  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC---C
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF---P  232 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~---~  232 (356)
                      ...++.+||=.|+  +.|..++.+++..  +.+|++++.+++..+.+++.   .|....+.... .+..+.+..+.   .
T Consensus        55 ~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  131 (223)
T 3duw_A           55 QIQGARNILEIGT--LGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRT-GLALDSLQQIENEKY  131 (223)
T ss_dssp             HHHTCSEEEEECC--TTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-SCHHHHHHHHHHTTC
T ss_pred             HhhCCCEEEEecC--CccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-cCHHHHHHHHHhcCC
Confidence            3467899999984  4788888999887  56999999999888777643   35432122211 23333333322   1


Q ss_pred             CCceEEEECCch----hhHHHHHHhcccCCEEEEEec
Q 042784          233 NGIDVYLDNVGG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 ~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +.||+|+-....    ..+..+.+.|+++|.++.-..
T Consensus       132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            469999854433    367888999999998876443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.88  E-value=0.0079  Score=48.55  Aligned_cols=101  Identities=18%  Similarity=0.207  Sum_probs=69.1

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ....+.++++||-.|+ |. |..+..+++.. .+|++++.+++..+.+++.   .+....+.... .++.+.+...  +.
T Consensus        27 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~--~~  100 (192)
T 1l3i_A           27 CLAEPGKNDVAVDVGC-GT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME-GDAPEALCKI--PD  100 (192)
T ss_dssp             HHHCCCTTCEEEEESC-TT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE-SCHHHHHTTS--CC
T ss_pred             HhcCCCCCCEEEEECC-CC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEe-cCHHHhcccC--CC
Confidence            3456789999999995 54 88888888766 8999999999888887742   34311122211 2343323221  46


Q ss_pred             ceEEEECCc----hhhHHHHHHhcccCCEEEEEe
Q 042784          235 IDVYLDNVG----GKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       235 ~d~vld~~g----~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      +|+|+....    ...+..+.+.|+++|.++...
T Consensus       101 ~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A          101 IDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             EEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999997654    237788889999999988654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.87  E-value=0.0031  Score=56.64  Aligned_cols=94  Identities=18%  Similarity=0.224  Sum_probs=61.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh----HHHHHHHH--HhCCCc-eeecCChhhHHHHHHHHCCCCceE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD----DNVKLLKE--EFGYDD-AFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~----~~~~~~~~--~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      ..+|||+||+|.+|..+++.+...|.+|+++++++    ++.+.+.+  ..+... ..|..+..++.+.+.+   .++|+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~---~~~d~   86 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE---HEIDI   86 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH---TTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh---CCCCE
Confidence            35899999999999999999988899999999866    44443331  234431 2345544455555543   36999


Q ss_pred             EEECCchh---hHHHHHHhcccCC---EEE
Q 042784          238 YLDNVGGK---MLEAVLNHVNVHA---RII  261 (356)
Q Consensus       238 vld~~g~~---~~~~~~~~l~~~G---~~v  261 (356)
                      ||.+.+..   ....+++.++..|   +++
T Consensus        87 Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           87 VVSTVGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             EEECCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             EEECCchhhHHHHHHHHHHHHHcCCceEEe
Confidence            99999863   2334444444434   555

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.87  E-value=0.0028  Score=61.58  Aligned_cols=79  Identities=22%  Similarity=0.329  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh---------HHHHHHHH---HhCCCceeecCChhh---HHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD---------DNVKLLKE---EFGYDDAFNYNSEMS---FDAALT  228 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~---------~~~~~~~~---~~g~~~v~~~~~~~~---~~~~i~  228 (356)
                      .|++++|+||++++|.+.++.+...|++|++.+++.         ++.+.+.+   ..|...+.|..+..+   +.+.+.
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence            478999999999999999999999999999987543         33333222   335444556655333   333333


Q ss_pred             HHCCCCceEEEECCc
Q 042784          229 KYFPNGIDVYLDNVG  243 (356)
Q Consensus       229 ~~~~~~~d~vld~~g  243 (356)
                      +.. +.+|+++++.|
T Consensus        87 ~~~-G~iDiLVnNAG  100 (604)
T 2et6_A           87 KNF-GTVHVIINNAG  100 (604)
T ss_dssp             HHH-SCCCEEEECCC
T ss_pred             HHc-CCCCEEEECCC
Confidence            222 46999999988

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.87  E-value=0.0032  Score=55.34  Aligned_cols=75  Identities=12%  Similarity=0.178  Sum_probs=51.8

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-------HHHHHHHH--HhCCCc-eeecCChhhHHHHHHHHCCCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-------DNVKLLKE--EFGYDD-AFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-------~~~~~~~~--~~g~~~-v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      +.+|+|+||+|.+|..+++.+...|.+|+++++++       ++.+.+++  ..|... ..|..+..++.+.+     .+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~-----~~   76 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAI-----KQ   76 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH-----TT
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHH-----hC
Confidence            46799999999999999988888899999999876       54443331  234431 23454433343333     25


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|+||.+++.
T Consensus        77 ~d~vi~~a~~   86 (307)
T 2gas_A           77 VDIVICAAGR   86 (307)
T ss_dssp             CSEEEECSSS
T ss_pred             CCEEEECCcc
Confidence            9999999885

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.86  E-value=0.0048  Score=56.02  Aligned_cols=92  Identities=12%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      -+|+|+|+ |.+|..+++.+.. ..+|.+.+++.++.+.++ ++.....+|..+...+.+.+     .++|+|+.|++..
T Consensus        17 mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~-~~~~~~~~d~~d~~~l~~~~-----~~~DvVi~~~p~~   88 (365)
T 3abi_A           17 MKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK-EFATPLKVDASNFDKLVEVM-----KEFELVIGALPGF   88 (365)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT-TTSEEEECCTTCHHHHHHHH-----TTCSEEEECCCGG
T ss_pred             cEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh-ccCCcEEEecCCHHHHHHHH-----hCCCEEEEecCCc
Confidence            37999998 9999998877753 468989999999988887 44333334555434444444     3489999999875


Q ss_pred             -hHHHHHHhcccCCEEEEEec
Q 042784          246 -MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       246 -~~~~~~~~l~~~G~~v~~g~  265 (356)
                       ...-+-.|++.+-+++.+..
T Consensus        89 ~~~~v~~~~~~~g~~yvD~s~  109 (365)
T 3abi_A           89 LGFKSIKAAIKSKVDMVDVSF  109 (365)
T ss_dssp             GHHHHHHHHHHHTCEEEECCC
T ss_pred             ccchHHHHHHhcCcceEeeec
Confidence             45556678888889988754

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.85  E-value=0.0086  Score=54.47  Aligned_cols=84  Identities=17%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             CCC-CCCCEEEEEcCCChHHHHHHHHHHH-CCCEEEEEeCChHH----------------HHHHHHHhCCCce---eecC
Q 042784          160 GQP-KSGSNVFVSAAAGGVGMFAGQLAKL-KGCKVVGSTGSDDN----------------VKLLKEEFGYDDA---FNYN  218 (356)
Q Consensus       160 ~~~-~~g~~VlV~g~~g~vG~~~i~la~~-~G~~V~~~~~s~~~----------------~~~~~~~~g~~~v---~~~~  218 (356)
                      ..+ ..++++||+||++++|++++..+.. .|++|++++++.+.                .+.++ +.|....   .|..
T Consensus        41 ~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~-~~G~~a~~i~~Dvt  119 (405)
T 3zu3_A           41 GPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAA-QKGLYAKSINGDAF  119 (405)
T ss_dssp             CCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHH-HTTCCEEEEESCTT
T ss_pred             CCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHH-hcCCceEEEECCCC
Confidence            444 5678899999999999998877777 89999988765332                12334 5564321   2444


Q ss_pred             ChhhHHHHHHHHC--CCCceEEEECCch
Q 042784          219 SEMSFDAALTKYF--PNGIDVYLDNVGG  244 (356)
Q Consensus       219 ~~~~~~~~i~~~~--~~~~d~vld~~g~  244 (356)
                      +..+..+.+.+..  -+++|+++++.|.
T Consensus       120 d~~~v~~~v~~i~~~~G~IDiLVNNAG~  147 (405)
T 3zu3_A          120 SDEIKQLTIDAIKQDLGQVDQVIYSLAS  147 (405)
T ss_dssp             SHHHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEcCcc
Confidence            4333333333321  2579999999874

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=96.85  E-value=0.0093  Score=54.91  Aligned_cols=86  Identities=13%  Similarity=0.070  Sum_probs=53.7

Q ss_pred             hCCCCCCCEEEEEcCCChHHHH--HHHHHHHCCCEEEEEeCCh---------------HHHHHHHHHhCCCce---eecC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMF--AGQLAKLKGCKVVGSTGSD---------------DNVKLLKEEFGYDDA---FNYN  218 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~--~i~la~~~G~~V~~~~~s~---------------~~~~~~~~~~g~~~v---~~~~  218 (356)
                      ......|+++||+||++++|++  .+......|++|++++++.               +..+...++.|....   .|..
T Consensus        54 ~~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt  133 (418)
T 4eue_A           54 AIGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAF  133 (418)
T ss_dssp             SCCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCC
Confidence            3445779999999999999998  4444445599999888643               222222225565321   2444


Q ss_pred             ChhhHHHHHHHHC--CCCceEEEECCch
Q 042784          219 SEMSFDAALTKYF--PNGIDVYLDNVGG  244 (356)
Q Consensus       219 ~~~~~~~~i~~~~--~~~~d~vld~~g~  244 (356)
                      +..+..+.+.++.  -+++|+++.++|.
T Consensus       134 d~~~v~~~v~~i~~~~G~IDiLVnNAG~  161 (418)
T 4eue_A          134 SNETKDKVIKYIKDEFGKIDLFVYSLAA  161 (418)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence            4344444343332  2579999998875

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.84  E-value=0.0032  Score=52.67  Aligned_cols=102  Identities=13%  Similarity=0.081  Sum_probs=68.7

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHCC---
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYFP---  232 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~~---  232 (356)
                      ...++.+||=.|+  +.|..++.+++..  +.+|++++.+++..+.+++.+   |....+.... .+..+.+..+..   
T Consensus        61 ~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  137 (225)
T 3tr6_A           61 KLMQAKKVIDIGT--FTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL-SPAKDTLAELIHAGQ  137 (225)
T ss_dssp             HHHTCSEEEEECC--TTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-SCHHHHHHHHHTTTC
T ss_pred             HhhCCCEEEEeCC--cchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe-CCHHHHHHHhhhccC
Confidence            3457789999984  4588888999876  469999999998888776433   5432122211 234344433321   


Q ss_pred             -CCceEEEECCch----hhHHHHHHhcccCCEEEEEec
Q 042784          233 -NGIDVYLDNVGG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 -~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                       +.||+|+-....    ..+..+.+.|+++|.++.-..
T Consensus       138 ~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          138 AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence             579999954443    267888899999999986443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.84  E-value=0.0017  Score=53.61  Aligned_cols=95  Identities=20%  Similarity=0.289  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCCceE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      ++++++||-.|+ |. |..+..+++ .+. +|++++.+++..+.+++.   .+... +.... .++    .+...+.+|+
T Consensus        58 ~~~~~~vLDiG~-G~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~-~d~----~~~~~~~fD~  128 (205)
T 3grz_A           58 MVKPLTVADVGT-GS-GILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYD-IALQK-TSL----LADVDGKFDL  128 (205)
T ss_dssp             CSSCCEEEEETC-TT-SHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEE-SST----TTTCCSCEEE
T ss_pred             ccCCCEEEEECC-CC-CHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEe-ccc----cccCCCCceE
Confidence            578899999995 54 777777776 465 999999999888877743   24321 11111 111    1122357999


Q ss_pred             EEECCchh----hHHHHHHhcccCCEEEEEec
Q 042784          238 YLDNVGGK----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       238 vld~~g~~----~~~~~~~~l~~~G~~v~~g~  265 (356)
                      |+......    .+..+.+.|+++|.++....
T Consensus       129 i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  160 (205)
T 3grz_A          129 IVANILAEILLDLIPQLDSHLNEDGQVIFSGI  160 (205)
T ss_dssp             EEEESCHHHHHHHGGGSGGGEEEEEEEEEEEE
T ss_pred             EEECCcHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            99766544    35566678999999887543

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.82  E-value=0.0051  Score=54.32  Aligned_cols=69  Identities=13%  Similarity=0.110  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +.+|||+||+|.+|..+++.+...|.+|++++++.++.       + ....|..+...+.+.+...   ++|+||.+.|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~-~~~~Dl~d~~~~~~~~~~~---~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARP-------K-FEQVNLLDSNAVHHIIHDF---QPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC--------------------------CHHHHHHH---CCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCC-------C-eEEecCCCHHHHHHHHHhh---CCCEEEECCcc
Confidence            46899999999999999998888999999998654431       1 1112333323333334332   58999998874

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.80  E-value=0.0024  Score=54.79  Aligned_cols=106  Identities=11%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCc
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      +.....++++.+||-.|+ | .|..+..+++..|++|++++.+++..+.+++......-+.... .++.+ + ....+.+
T Consensus        47 ~~~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~~~-~-~~~~~~f  121 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGS-G-LGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEA-NDILT-K-EFPENNF  121 (266)
T ss_dssp             HTTTCCCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEE-CCTTT-C-CCCTTCE
T ss_pred             HHHhcCCCCCCEEEEECC-C-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE-Ccccc-C-CCCCCcE
Confidence            334556789999999995 4 7888889998778999999999999999984332211111100 11110 0 1123579


Q ss_pred             eEEEECCch---------hhHHHHHHhcccCCEEEEEecc
Q 042784          236 DVYLDNVGG---------KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       236 d~vld~~g~---------~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      |+|+.+..-         ..+..+.+.|+|+|.++.....
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            999975321         2578888999999999877543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.78  E-value=0.0064  Score=53.83  Aligned_cols=92  Identities=12%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh------HHHHHHHH--HhCCCc-eeecCChhhHHHHHHHHCCCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD------DNVKLLKE--EFGYDD-AFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~------~~~~~~~~--~~g~~~-v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++.      ++.+.+.+  ..+... ..|+.+..++.+.+     .++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~-----~~~   78 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVL-----KQV   78 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH-----TTC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHH-----cCC
Confidence            35799999999999999998888899999999875      33333320  234431 13455433344333     359


Q ss_pred             eEEEECCchh---hHHHHHHhcccC---CEEE
Q 042784          236 DVYLDNVGGK---MLEAVLNHVNVH---ARII  261 (356)
Q Consensus       236 d~vld~~g~~---~~~~~~~~l~~~---G~~v  261 (356)
                      |+||.+++..   ....+++.++..   ++++
T Consensus        79 d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           79 DIVISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             SEEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             CEEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            9999998853   223344444332   4666

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.78  E-value=0.0063  Score=52.18  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCCceEE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      ++++++||-.|+ |. |..++.+++ .|++|++++.++...+.+++.   .+..  +.... .++.+.   +..+.+|+|
T Consensus       118 ~~~~~~VLDiGc-G~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~-~d~~~~---~~~~~fD~V  188 (254)
T 2nxc_A          118 LRPGDKVLDLGT-GS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLE-GSLEAA---LPFGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETC-TT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEE-SCHHHH---GGGCCEEEE
T ss_pred             cCCCCEEEEecC-CC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEE-CChhhc---CcCCCCCEE
Confidence            578999999995 54 777777776 577999999999888777642   3433  22111 233332   223579999


Q ss_pred             EECCch----hhHHHHHHhcccCCEEEEEecc
Q 042784          239 LDNVGG----KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       239 ld~~g~----~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +.+.-.    ..+..+.+.|+++|+++..+..
T Consensus       189 v~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          189 VANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            976533    3677888899999999987653

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.78  E-value=0.0011  Score=59.34  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=51.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHHhC------CC-c--eeecCChhhHHHHHHHHC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN----VKLLKEEFG------YD-D--AFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~----~~~~~~~~g------~~-~--v~~~~~~~~~~~~i~~~~  231 (356)
                      +.+|||+|++|++|.+++..+...|++|+.+.++.++    .+.++ ..+      .. .  ..|..+..++.+.+.++.
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWE-AARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHH-HHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHH-HhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            5789999999999999999999999987776644322    12222 221      21 1  134555455555555544


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                      .+.+|++|++.|
T Consensus        81 ~g~iD~lVnnAG   92 (327)
T 1jtv_A           81 EGRVDVLVCNAG   92 (327)
T ss_dssp             TSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            457999999886

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.77  E-value=0.002  Score=57.79  Aligned_cols=104  Identities=15%  Similarity=0.188  Sum_probs=66.8

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHhC-------------CCceeecCChhhH
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEEFG-------------YDDAFNYNSEMSF  223 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~~g-------------~~~v~~~~~~~~~  223 (356)
                      ...+.+|++||-.|+ |. |..++.+++..|  .+|++++.+++..+.+++.+.             ...-+.... .+.
T Consensus       100 ~l~~~~g~~VLDiG~-G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~-~d~  176 (336)
T 2b25_A          100 MMDINPGDTVLEAGS-GS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH-KDI  176 (336)
T ss_dssp             HHTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE-SCT
T ss_pred             hcCCCCCCEEEEeCC-Cc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE-CCh
Confidence            456889999999995 54 888888998876  599999999988888774321             001111110 111


Q ss_pred             HHHHHHHCCCCceEEEECCchh--hHHHHHHhcccCCEEEEEec
Q 042784          224 DAALTKYFPNGIDVYLDNVGGK--MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .+.+..+..+.||+|+-.....  .+..+.+.|+++|+++.+..
T Consensus       177 ~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          177 SGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             TCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             HHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            1111112224699999765543  68899999999999986643

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.75  E-value=0.00048  Score=58.51  Aligned_cols=98  Identities=14%  Similarity=0.086  Sum_probs=60.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +.+|||+||+|++|..+++.+...|+  +|+++++++++.+... .-+.. ...|..+..+    +.+.. .++|+||.|
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~----~~~~~-~~~d~vi~~   91 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDD----YASAF-QGHDVGFCC   91 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGG----GGGGG-SSCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHH----HHHHh-cCCCEEEEC
Confidence            67899999999999999998888899  9999998765433221 11121 1123322122    22222 269999999


Q ss_pred             Cchh---------------hHHHHHHhccc--CCEEEEEecccc
Q 042784          242 VGGK---------------MLEAVLNHVNV--HARIILCGMISQ  268 (356)
Q Consensus       242 ~g~~---------------~~~~~~~~l~~--~G~~v~~g~~~~  268 (356)
                      .|..               ....+++.++.  .++++.++....
T Consensus        92 ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~  135 (242)
T 2bka_A           92 LGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA  135 (242)
T ss_dssp             CCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             CCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcC
Confidence            9842               11223333433  268888876544

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.74  E-value=0.006  Score=53.08  Aligned_cols=96  Identities=15%  Similarity=0.095  Sum_probs=68.0

Q ss_pred             cCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHH
Q 042784          145 LGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFD  224 (356)
Q Consensus       145 l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~  224 (356)
                      +||+...++..+.+...--.|.+++|.|.++.+|..++.++...|++|++..+...                     ++.
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~---------------------~l~  203 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS---------------------TED  203 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC---------------------HHH
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC---------------------Cch
Confidence            45555556666655544457999999998677999999999999999888764222                     222


Q ss_pred             --HHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          225 --AALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       225 --~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                        +.+++     +|+||.++|.+.+ ---..++++..++.+|...
T Consensus       204 l~~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  242 (300)
T 4a26_A          204 MIDYLRT-----ADIVIAAMGQPGY-VKGEWIKEGAAVVDVGTTP  242 (300)
T ss_dssp             HHHHHHT-----CSEEEECSCCTTC-BCGGGSCTTCEEEECCCEE
T ss_pred             hhhhhcc-----CCEEEECCCCCCC-CcHHhcCCCcEEEEEeccC
Confidence              33433     8999999997632 1124579999999998753

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.74  E-value=0.0048  Score=52.70  Aligned_cols=105  Identities=19%  Similarity=0.243  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-eCChHHHHHHHHH---hCCCc-e--eecCChhhHHH---HHHHHC--
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS-TGSDDNVKLLKEE---FGYDD-A--FNYNSEMSFDA---ALTKYF--  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~-~~s~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~---~i~~~~--  231 (356)
                      .++++||+||++++|.++++.+...|++|+++ .++.++.+.+.++   .+... .  .|..+..+...   .+.+..  
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhcc
Confidence            57899999999999999999999999999886 4455544433322   23221 1  23333222222   222211  


Q ss_pred             ---CCCceEEEECCchh-----------hH---------------HHHHHhcccCCEEEEEecccc
Q 042784          232 ---PNGIDVYLDNVGGK-----------ML---------------EAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       232 ---~~~~d~vld~~g~~-----------~~---------------~~~~~~l~~~G~~v~~g~~~~  268 (356)
                         .+.+|+++.+.|..           .+               +.++..++..|+++.++....
T Consensus        86 ~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~  151 (255)
T 3icc_A           86 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAAT  151 (255)
T ss_dssp             HHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGG
T ss_pred             cccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhh
Confidence               13599999998730           11               222334456789998887554

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.73  E-value=0.0039  Score=53.84  Aligned_cols=97  Identities=16%  Similarity=0.098  Sum_probs=68.9

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+...++..+.+..---.|.+++|.|.++.+|..+..++...|++|++..+..                     .++
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------------------~~L  198 (286)
T 4a5o_A          140 LRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------------------RDL  198 (286)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------------------SCH
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------------------cCH
Confidence            34555555555565444335799999999977799999999999999988765211                     234


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.+++     +|+|+.++|.+.+ ---..++++..++.+|...
T Consensus       199 ~~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          199 ADHVSR-----ADLVVVAAGKPGL-VKGEWIKEGAIVIDVGINR  236 (286)
T ss_dssp             HHHHHT-----CSEEEECCCCTTC-BCGGGSCTTCEEEECCSCS
T ss_pred             HHHhcc-----CCEEEECCCCCCC-CCHHHcCCCeEEEEecccc
Confidence            445544     8999999997632 1225679999999998754

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.73  E-value=0.005  Score=54.83  Aligned_cols=79  Identities=18%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH--HHHHHHhC----CC-ceeecCChhhHHHHHHHHCCCC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV--KLLKEEFG----YD-DAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~--~~~~~~~g----~~-~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      -.++.+|||+||+|.+|..+++.+...|.+|++++++.++.  ..++ .+.    .. ...|..+..++.+.+...   +
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~   86 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR-ELGIEGDIQYEDGDMADACSVQRAVIKA---Q   86 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHH-HTTCGGGEEEEECCTTCHHHHHHHHHHH---C
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchh-hccccCceEEEECCCCCHHHHHHHHHHc---C
Confidence            46789999999999999999998888999999999875431  2222 221    11 112444434444444432   5


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|+||.++|.
T Consensus        87 ~d~Vih~A~~   96 (335)
T 1rpn_A           87 PQEVYNLAAQ   96 (335)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEECccc
Confidence            7999999873

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.73  E-value=0.0038  Score=56.22  Aligned_cols=76  Identities=16%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--C-Cce--eecCChhhHHHHHHHHCCCCceEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG--Y-DDA--FNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g--~-~~v--~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      +.+|||+||+|.+|..+++.+...|.+|++++++.++...+.+.+.  . ..+  .|..+...+.+.+...   ++|+||
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~~d~vi   85 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREF---QPEIVF   85 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH---CCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhc---CCCEEE
Confidence            5789999999999999999888899999999987655433321221  1 112  2444434444444432   589999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      .++|
T Consensus        86 h~A~   89 (357)
T 1rkx_A           86 HMAA   89 (357)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            9987

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.72  E-value=0.0025  Score=53.94  Aligned_cols=99  Identities=15%  Similarity=0.233  Sum_probs=68.3

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCCc
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ...+.++++||-.|+ | .|..+..+++..+.+|++++.+++..+.+++.   .|...+ .... .+....+..  +..+
T Consensus        86 ~l~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~-~d~~~~~~~--~~~f  159 (235)
T 1jg1_A           86 IANLKPGMNILEVGT-G-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNV-HVIL-GDGSKGFPP--KAPY  159 (235)
T ss_dssp             HHTCCTTCCEEEECC-T-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE-SCGGGCCGG--GCCE
T ss_pred             hcCCCCCCEEEEEeC-C-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEE-CCcccCCCC--CCCc
Confidence            446889999999995 5 78899999988778999999999888877643   343322 1111 122111111  2359


Q ss_pred             eEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          236 DVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       236 d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      |+|+.+.... ....+.+.|+++|+++..
T Consensus       160 D~Ii~~~~~~~~~~~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          160 DVIIVTAGAPKIPEPLIEQLKIGGKLIIP  188 (235)
T ss_dssp             EEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             cEEEECCcHHHHHHHHHHhcCCCcEEEEE
Confidence            9999877654 456788999999998754

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.72  E-value=0.0032  Score=53.09  Aligned_cols=100  Identities=10%  Similarity=0.084  Sum_probs=67.6

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCc-e--eecCChhhHHHHHHHHCCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYDD-A--FNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~i~~~~~~  233 (356)
                      ...++||++||=.|+  |.|..+..+|+..|.  +|++++.+++..+.+++...... +  +.... .+. +.. .....
T Consensus        72 ~l~ikpG~~VldlG~--G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~-~~p-~~~-~~~~~  146 (233)
T 4df3_A           72 ELPVKEGDRILYLGI--ASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDA-RFP-EKY-RHLVE  146 (233)
T ss_dssp             CCCCCTTCEEEEETC--TTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCT-TCG-GGG-TTTCC
T ss_pred             hcCCCCCCEEEEecC--cCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEec-cCc-ccc-ccccc
Confidence            356899999999995  568889999999886  89999999998888874332211 1  11111 110 000 01124


Q ss_pred             CceEEEECCch-----hhHHHHHHhcccCCEEEEE
Q 042784          234 GIDVYLDNVGG-----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       234 ~~d~vld~~g~-----~~~~~~~~~l~~~G~~v~~  263 (356)
                      .+|+|+.....     ..+.++.+.|+|+|+++.+
T Consensus       147 ~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          147 GVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             CEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            69998865543     2677888999999998864

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.0081  Score=56.28  Aligned_cols=95  Identities=15%  Similarity=0.174  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .+.+|+|+|+ |++|.+++..+... |.+|++.+++.++.+.+.+..+... .+|..+..++.+.+.     ++|+|++|
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~-----~~DvVIn~   95 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA-----DNDVVISL   95 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH-----TSSEEEEC
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc-----CCCEEEEC
Confidence            4678999997 99999998888777 6799999999888776653334321 234443234444332     58999999


Q ss_pred             Cchhh-HHHHHHhcccCCEEEEEe
Q 042784          242 VGGKM-LEAVLNHVNVHARIILCG  264 (356)
Q Consensus       242 ~g~~~-~~~~~~~l~~~G~~v~~g  264 (356)
                      ++... ......+++.+..++...
T Consensus        96 tp~~~~~~v~~a~l~~g~~vvd~~  119 (467)
T 2axq_A           96 IPYTFHPNVVKSAIRTKTDVVTSS  119 (467)
T ss_dssp             SCGGGHHHHHHHHHHHTCEEEECS
T ss_pred             CchhhhHHHHHHHHhcCCEEEEee
Confidence            98752 223445667777776653

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.71  E-value=0.0062  Score=55.17  Aligned_cols=74  Identities=15%  Similarity=0.081  Sum_probs=50.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCc-eeecC-ChhhHHHHHHHHCCCCceEEEEC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDD-AFNYN-SEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~-~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +.+|||+||+|.+|..+++.+... |.+|++++++.++...+...-+... ..|.. +...+.+.+.     ++|+||.+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~-----~~d~Vih~   98 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK-----KCDVILPL   98 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH-----HCSEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc-----cCCEEEEc
Confidence            578999999999999998887776 8999999988766554431112221 12444 3233433333     48999998


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      ++
T Consensus        99 A~  100 (372)
T 3slg_A           99 VA  100 (372)
T ss_dssp             BC
T ss_pred             Cc
Confidence            87

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.71  E-value=0.0014  Score=55.63  Aligned_cols=100  Identities=10%  Similarity=0.062  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHCCCCceEEE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      ..+|.+||=+|.  |.|..+..+++..+.+|++++.+++-.+.++ +....  .-+.... .++...+..+..+.||.|+
T Consensus        58 ~~~G~rVLdiG~--G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~-~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           58 SSKGGRVLEVGF--GMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLK-GLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTTCEEEEEECC--TTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEE-SCHHHHGGGSCTTCEEEEE
T ss_pred             ccCCCeEEEECC--CccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEe-ehHHhhcccccccCCceEE
Confidence            478999999994  4688888888877779999999999999888 43321  1111111 2344444444445799884


Q ss_pred             -ECCch-----------hhHHHHHHhcccCCEEEEEec
Q 042784          240 -DNVGG-----------KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       240 -d~~g~-----------~~~~~~~~~l~~~G~~v~~g~  265 (356)
                       |+...           ..+.++.+.|+|+|+++.+..
T Consensus       134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~  171 (236)
T 3orh_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             EeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEec
Confidence             54321           156778899999999987643

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.70  E-value=0.044  Score=48.71  Aligned_cols=136  Identities=16%  Similarity=0.116  Sum_probs=76.7

Q ss_pred             EEEEEcCCChHHHHH-HHHHHHCCCEEEE-EeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFA-GQLAKLKGCKVVG-STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~-i~la~~~G~~V~~-~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|.|.|+ |.+|... +..++..++++++ .++++++.+.+.+++|...++     .++.+.+.   ...+|+|+.|+..
T Consensus         2 ~vgiiG~-G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~-----~~~~~~l~---~~~~D~V~i~tp~   72 (332)
T 2glx_A            2 RWGLIGA-STIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSV-----TSVEELVG---DPDVDAVYVSTTN   72 (332)
T ss_dssp             EEEEESC-CHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCB-----SCHHHHHT---CTTCCEEEECSCG
T ss_pred             eEEEEcc-cHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCccc-----CCHHHHhc---CCCCCEEEEeCCh
Confidence            6889997 9999875 5433337787764 566777776666577864332     23433332   2369999999987


Q ss_pred             h-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEEEEEecccccchHHHHHHHHHHHHHcCCee
Q 042784          245 K-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       245 ~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      . +...+..+++.+.+ +++..+....     ......+.... .+++.+.-...    .++...++.+.+++.+|.+-
T Consensus        73 ~~h~~~~~~al~~Gk~-v~~ekP~~~~-----~~~~~~l~~~a~~~g~~~~~~~~----~r~~p~~~~~~~~i~~g~iG  141 (332)
T 2glx_A           73 ELHREQTLAAIRAGKH-VLCEKPLAMT-----LEDAREMVVAAREAGVVLGTNHH----LRNAAAHRAMRDAIAEGRIG  141 (332)
T ss_dssp             GGHHHHHHHHHHTTCE-EEECSSSCSS-----HHHHHHHHHHHHHHTCCEEECCC----GGGSHHHHHHHHHHHTTTTS
T ss_pred             hHhHHHHHHHHHCCCe-EEEeCCCcCC-----HHHHHHHHHHHHHcCCEEEEeeh----hhcCHHHHHHHHHHHcCCCC
Confidence            5 66677777777544 4454432210     00111122211 22333322111    12334567788888888763

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.69  E-value=0.0071  Score=53.48  Aligned_cols=75  Identities=12%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      -++..+|||+||+|.+|..+++.+...|.+|+++++++++ +.    ++... ..|..+...+.+.+..   .++|+||.
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l~~~~~~~Dl~d~~~~~~~~~~---~~~d~vih   80 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----PNVEMISLDIMDSQRVKKVISD---IKPDYIFH   80 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----TTEEEEECCTTCHHHHHHHHHH---HCCSEEEE
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----ceeeEEECCCCCHHHHHHHHHh---cCCCEEEE
Confidence            3567899999999999999999888899999999987654 21    22211 1244443344444433   35899999


Q ss_pred             CCch
Q 042784          241 NVGG  244 (356)
Q Consensus       241 ~~g~  244 (356)
                      ++|.
T Consensus        81 ~A~~   84 (321)
T 2pk3_A           81 LAAK   84 (321)
T ss_dssp             CCSC
T ss_pred             cCcc
Confidence            9873

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.68  E-value=0.0087  Score=48.29  Aligned_cols=99  Identities=19%  Similarity=0.217  Sum_probs=66.9

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC--ceeecCChhhHHHHHHHHCCCC
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD--DAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ..++++++||=.|+  |.|..+..+++. +.+|++++.+++..+.+++.   .|..  .++. .+..    .+.+..++.
T Consensus        18 ~~~~~~~~vLDiGc--G~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~~~----~l~~~~~~~   89 (185)
T 3mti_A           18 EVLDDESIVVDATM--GNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELIL-DGHE----NLDHYVREP   89 (185)
T ss_dssp             TTCCTTCEEEESCC--TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SCGG----GGGGTCCSC
T ss_pred             HhCCCCCEEEEEcC--CCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-CcHH----HHHhhccCC
Confidence            45789999999884  358888888887 88999999999888777643   3432  1222 1111    122233457


Q ss_pred             ceEEEECCch----------------hhHHHHHHhcccCCEEEEEecc
Q 042784          235 IDVYLDNVGG----------------KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       235 ~d~vld~~g~----------------~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ||+|+-+.+.                ..+..+.+.|+|+|+++.+...
T Consensus        90 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           90 IRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             cCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            9999865321                1457888999999999876553

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.68  E-value=0.012  Score=54.15  Aligned_cols=94  Identities=12%  Similarity=0.084  Sum_probs=66.3

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHhCC-----Cc--eeecCChhhHHHHHHHHCCCCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKG---CKVVGSTGSDDNVKLLKEEFGY-----DD--AFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G---~~V~~~~~s~~~~~~~~~~~g~-----~~--v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      .+|+|+|+ |++|..+++.+...|   .+|++.+++.++.+.+.++++.     ..  ..|..+..++.+.+.+.   ++
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~---~~   77 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV---KP   77 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH---CC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh---CC
Confidence            37999998 999999998888777   3999999999988777655542     11  23444434555555543   58


Q ss_pred             eEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          236 DVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       236 d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      |+|++|++.. ....+..+++.+-+++.+
T Consensus        78 DvVin~ag~~~~~~v~~a~l~~g~~vvD~  106 (405)
T 4ina_A           78 QIVLNIALPYQDLTIMEACLRTGVPYLDT  106 (405)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHTCCEEES
T ss_pred             CEEEECCCcccChHHHHHHHHhCCCEEEe
Confidence            9999999864 344455667777777754

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.68  E-value=0.0096  Score=51.53  Aligned_cols=91  Identities=13%  Similarity=0.046  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC--CceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGY--DDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~--~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .+.+++|+|+ |++|.+++..+...|+ +|++..++.++.+.+.++++.  ..+..+   .++       ....+|+||+
T Consensus       119 ~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~---~~l-------~~~~~DivIn  187 (272)
T 3pwz_A          119 RNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRY---EAL-------EGQSFDIVVN  187 (272)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECS---GGG-------TTCCCSEEEE
T ss_pred             cCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeH---HHh-------cccCCCEEEE
Confidence            5889999997 9999999998889997 999999999988777657764  112222   111       1146999999


Q ss_pred             CCchhhHH----HHHHhcccCCEEEEEec
Q 042784          241 NVGGKMLE----AVLNHVNVHARIILCGM  265 (356)
Q Consensus       241 ~~g~~~~~----~~~~~l~~~G~~v~~g~  265 (356)
                      |++.....    .....++++..++.+..
T Consensus       188 aTp~gm~~~~~~i~~~~l~~~~~V~DlvY  216 (272)
T 3pwz_A          188 ATSASLTADLPPLPADVLGEAALAYELAY  216 (272)
T ss_dssp             CSSGGGGTCCCCCCGGGGTTCSEEEESSC
T ss_pred             CCCCCCCCCCCCCCHHHhCcCCEEEEeec
Confidence            98753211    01234666666666544

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.68  E-value=0.018  Score=47.67  Aligned_cols=88  Identities=10%  Similarity=0.060  Sum_probs=59.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC-----CCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG-----YDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g-----~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +|+|.|++|.+|...+..+...|.+|++.++++++.+.+.+.++     .+  +..   .++.+.+.     ++|+||.|
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~-----~~D~Vi~~   71 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDAS--ITG---MKNEDAAE-----ACDIAVLT   71 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCC--EEE---EEHHHHHH-----HCSEEEEC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCC--CCh---hhHHHHHh-----cCCEEEEe
Confidence            68999977999999888888889999999999888777664444     21  111   23444443     38999999


Q ss_pred             CchhhHHHHHHhcc---cCCEEEEEe
Q 042784          242 VGGKMLEAVLNHVN---VHARIILCG  264 (356)
Q Consensus       242 ~g~~~~~~~~~~l~---~~G~~v~~g  264 (356)
                      +........+..+.   ++..++.+.
T Consensus        72 ~~~~~~~~~~~~l~~~~~~~~vi~~~   97 (212)
T 1jay_A           72 IPWEHAIDTARDLKNILREKIVVSPL   97 (212)
T ss_dssp             SCHHHHHHHHHHTHHHHTTSEEEECC
T ss_pred             CChhhHHHHHHHHHHHcCCCEEEEcC
Confidence            98764444443222   344555544

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.68  E-value=0.0017  Score=57.91  Aligned_cols=77  Identities=8%  Similarity=0.018  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++......+.+.+....+  .|..+..++.+.+.+.   ++|+||.+
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~---~~D~vih~   95 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF---KPTHVVHS   95 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH---CCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc---CCCEEEEC
Confidence            467899999999999999988888899999999754332111102211111  2444434455555433   69999999


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      +|
T Consensus        96 A~   97 (330)
T 2pzm_A           96 AA   97 (330)
T ss_dssp             CC
T ss_pred             Cc
Confidence            87

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.68  E-value=0.0086  Score=52.86  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++..|++|++.+++.++ +.+. ++|+..    .   ++.+.+.+     .|+|+.++.
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~~----~---~l~ell~~-----aDvV~l~~p  205 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIANALGMNILLYDPYPNE-ERAK-EVNGKF----V---DLETLLKE-----SDVVTIHVP  205 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-HTTCEE----C---CHHHHHHH-----CSEEEECCC
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-hcCccc----c---CHHHHHhh-----CCEEEEecC
Confidence            5789999996 999999999999999999999988776 4555 677631    1   23333433     799999876


Q ss_pred             hh-----hH-HHHHHhcccCCEEEEEecc
Q 042784          244 GK-----ML-EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~~-----~~-~~~~~~l~~~G~~v~~g~~  266 (356)
                      ..     .+ ...+..+++++.++.++..
T Consensus       206 ~~~~t~~li~~~~l~~mk~ga~lin~arg  234 (307)
T 1wwk_A          206 LVESTYHLINEERLKLMKKTAILINTSRG  234 (307)
T ss_dssp             CSTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             CChHHhhhcCHHHHhcCCCCeEEEECCCC
Confidence            42     22 4567889999999988764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.68  E-value=0.0062  Score=53.67  Aligned_cols=75  Identities=19%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-----hHHHHHHHH--HhCCCc-eeecCChhhHHHHHHHHCCCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-----DDNVKLLKE--EFGYDD-AFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-----~~~~~~~~~--~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++     +++.+.++.  ..+... ..|..+..++.+.+     .++|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~-----~~~d   78 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL-----KQVD   78 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH-----TTCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH-----hCCC
Confidence            3579999999999999999888889999999987     444444431  223321 12454433444333     3599


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      +||.+++.
T Consensus        79 ~vi~~a~~   86 (313)
T 1qyd_A           79 VVISALAG   86 (313)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999874

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.67  E-value=0.0062  Score=49.72  Aligned_cols=103  Identities=18%  Similarity=0.178  Sum_probs=68.5

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCC
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ..++++++||-.|+ | .|..+..+++..+  .+|++++.+++..+.+++.   .|...-+.... .++. .+.+...+.
T Consensus        18 ~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~-~~~~~~~~~   93 (197)
T 3eey_A           18 MFVKEGDTVVDATC-G-NGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK-DGHQ-NMDKYIDCP   93 (197)
T ss_dssp             HHCCTTCEEEESCC-T-TSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEEC-SCGG-GGGGTCCSC
T ss_pred             hcCCCCCEEEEcCC-C-CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE-CCHH-HHhhhccCC
Confidence            34788999999985 4 3888888998864  5999999999888877643   23311122111 1211 122223357


Q ss_pred             ceEEEECCch----------------hhHHHHHHhcccCCEEEEEecc
Q 042784          235 IDVYLDNVGG----------------KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       235 ~d~vld~~g~----------------~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +|+|+...+.                ..+..+.+.|+++|+++.+...
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            9999865432                3688899999999999877543

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.67  E-value=0.0094  Score=53.48  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecC-------------Chh-hHH-HHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYN-------------SEM-SFD-AAL  227 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~-------------~~~-~~~-~~i  227 (356)
                      -.|++|.|.|. |.+|..+++.++..|++|++.+.+.++.+..+ ++|+..+ +..             ... .+. +.+
T Consensus       173 L~GktV~I~G~-GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~-~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~  249 (355)
T 1c1d_A          173 LDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHAV-ALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVA  249 (355)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHH
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeCCccHHHHHH-hcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHH
Confidence            47899999996 99999999999999999998887776645555 6776322 110             000 000 111


Q ss_pred             HHHCCCCceEEEECCchhhH-HHHHHhcccCCEEEEEe
Q 042784          228 TKYFPNGIDVYLDNVGGKML-EAVLNHVNVHARIILCG  264 (356)
Q Consensus       228 ~~~~~~~~d~vld~~g~~~~-~~~~~~l~~~G~~v~~g  264 (356)
                      ..+   ++++|+++...+.. +++.+.|..+|.++.-+
T Consensus       250 ~~l---k~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd  284 (355)
T 1c1d_A          250 RTL---DCSVVAGAANNVIADEAASDILHARGILYAPD  284 (355)
T ss_dssp             HHC---CCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred             hhC---CCCEEEECCCCCCCCHHHHHHHHhCCEEEECC
Confidence            111   36777777766533 35667777777666544

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.65  E-value=0.0069  Score=53.08  Aligned_cols=74  Identities=20%  Similarity=0.099  Sum_probs=51.4

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHH--HHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNV--KLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~--~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      ..+|||+||+|.+|..+++.+...| .+|+++++++++.  +.+. ..+... ..|..+..++.+.+     .++|+||.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~-~~~~~~~~~D~~d~~~l~~~~-----~~~d~vi~   78 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELR-LQGAEVVQGDQDDQVIMELAL-----NGAYATFI   78 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHH-HTTCEEEECCTTCHHHHHHHH-----TTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHH-HCCCEEEEecCCCHHHHHHHH-----hcCCEEEE
Confidence            4689999999999999998887778 8999999887653  2333 335432 13444433343333     35999999


Q ss_pred             CCch
Q 042784          241 NVGG  244 (356)
Q Consensus       241 ~~g~  244 (356)
                      +.+.
T Consensus        79 ~a~~   82 (299)
T 2wm3_A           79 VTNY   82 (299)
T ss_dssp             CCCH
T ss_pred             eCCC
Confidence            9874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.64  E-value=0.017  Score=48.28  Aligned_cols=101  Identities=16%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCC------CEEEEEeCChHHHHHHHHH---hC-----CC--ceeecCChhhHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKG------CKVVGSTGSDDNVKLLKEE---FG-----YD--DAFNYNSEMSFD  224 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G------~~V~~~~~s~~~~~~~~~~---~g-----~~--~v~~~~~~~~~~  224 (356)
                      .++++++||-.|+ |. |..+..+++..+      .+|++++.+++..+.+++.   .+     ..  .++..+....+.
T Consensus        77 ~~~~~~~VLdiG~-G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVGS-GS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TSCTTCEEEEESC-TT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCH
T ss_pred             hCCCCCEEEEECC-CC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccc
Confidence            5789999999995 54 888999999876      5999999999888777643   23     11  122111101111


Q ss_pred             HHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEec
Q 042784          225 AALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +....  .+.||+|+...... .+..+.+.|+++|+++..-.
T Consensus       155 ~~~~~--~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          155 EEKKE--LGLFDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHH--HCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             ccCcc--CCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence            00011  24699999876653 56788899999999886533

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.64  E-value=0.018  Score=53.00  Aligned_cols=94  Identities=21%  Similarity=0.334  Sum_probs=69.0

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee-ecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF-NYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~-~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +.+|+|.|. |-+|..+++.++..|..|++++.++++.+.++ ..|...++ |..+ .   +.+++..-..+|+|+-+++
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~-~~g~~vi~GDat~-~---~~L~~agi~~A~~viv~~~   77 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLR-KFGMKVFYGDATR-M---DLLESAGAAKAEVLINAID   77 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH-HTTCCCEESCTTC-H---HHHHHTTTTTCSEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-hCCCeEEEcCCCC-H---HHHHhcCCCccCEEEECCC
Confidence            467999997 99999999999999999999999999999998 78876333 2222 2   2344433347999999998


Q ss_pred             hh----hHHHHHHhcccCCEEEEEe
Q 042784          244 GK----MLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       244 ~~----~~~~~~~~l~~~G~~v~~g  264 (356)
                      +.    .+....+.+.+..+++.-.
T Consensus        78 ~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           78 DPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence            75    2334455666776766543

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.64  E-value=0.012  Score=55.91  Aligned_cols=78  Identities=13%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHH---H----HHHHHHhCCCc-e--eecCChhhHHHHHHHH
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDN---V----KLLKEEFGYDD-A--FNYNSEMSFDAALTKY  230 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~---~----~~~~~~~g~~~-v--~~~~~~~~~~~~i~~~  230 (356)
                      ++++.++||+|++|++|..++..+...|+ +|+.+.++...   .    +.++ ..|... +  .|..+...+.+.+.+ 
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~-~~g~~v~~~~~Dvtd~~~v~~~~~~-  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELR-GHGCEVVHAACDVAERDALAALVTA-  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHH-TTTCEEEEEECCSSCHHHHHHHHHH-
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHH-hcCCEEEEEEeCCCCHHHHHHHHhc-
Confidence            56789999999999999999988888899 78888887532   2    2233 345421 1  244443445444444 


Q ss_pred             CCCCceEEEECCc
Q 042784          231 FPNGIDVYLDNVG  243 (356)
Q Consensus       231 ~~~~~d~vld~~g  243 (356)
                        +.+|+||.+.|
T Consensus       334 --~~ld~VVh~AG  344 (511)
T 2z5l_A          334 --YPPNAVFHTAG  344 (511)
T ss_dssp             --SCCSEEEECCC
T ss_pred             --CCCcEEEECCc
Confidence              56999999987

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.63  E-value=0.0063  Score=52.93  Aligned_cols=96  Identities=17%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             cCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHH
Q 042784          145 LGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFD  224 (356)
Q Consensus       145 l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~  224 (356)
                      +||+....+..+....---.|.+|+|.|++..+|..+..++...|++|++..+.                    . .++.
T Consensus       145 ~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------------t-~~L~  203 (301)
T 1a4i_A          145 IPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------------T-AHLD  203 (301)
T ss_dssp             CCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------------C-SSHH
T ss_pred             cCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------------c-ccHH
Confidence            344444444444433323479999999996579999999999999998876421                    1 3455


Q ss_pred             HHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          225 AALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +.++     .+|+||-++|.+.+ ---..++++..++.+|...
T Consensus       204 ~~~~-----~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~~  240 (301)
T 1a4i_A          204 EEVN-----KGDILVVATGQPEM-VKGEWIKPGAIVIDCGINY  240 (301)
T ss_dssp             HHHT-----TCSEEEECCCCTTC-BCGGGSCTTCEEEECCCBC
T ss_pred             HHhc-----cCCEEEECCCCccc-CCHHHcCCCcEEEEccCCC
Confidence            5554     38999999998633 2224578999999998754

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.63  E-value=0.0028  Score=53.95  Aligned_cols=75  Identities=12%  Similarity=0.058  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHH-----HHHH-C-CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAA-----LTKY-F-PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~-----i~~~-~-~~~~d  236 (356)
                      .++++||+||+|++|.++++.+.. |.+|+++++++++.+.+. +......+..    ++.+.     +.+. . -+++|
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~-~~~~~~~~~~----D~~~~~~~~~~~~~~~~~~~id   77 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALA-EIEGVEPIES----DIVKEVLEEGGVDKLKNLDHVD   77 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHH-TSTTEEEEEC----CHHHHHHTSSSCGGGTTCSCCS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHH-hhcCCcceec----ccchHHHHHHHHHHHHhcCCCC
Confidence            368999999999999998877655 899999999998888776 4322222221    12111     1111 1 14699


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      +++.+.|.
T Consensus        78 ~lv~~Ag~   85 (245)
T 3e9n_A           78 TLVHAAAV   85 (245)
T ss_dssp             EEEECC--
T ss_pred             EEEECCCc
Confidence            99999874

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.62  E-value=0.012  Score=53.01  Aligned_cols=97  Identities=15%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH--HHHHHHh-CCCc-eee-cCChhhHHHHHHHHCCCCceEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV--KLLKEEF-GYDD-AFN-YNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~--~~~~~~~-g~~~-v~~-~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      +.+|+|+||+|.+|..+++.+...|.+|+++++++++.  +.+. .. +... ..| ..+..++.+.+     .++|+||
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~-~~~~v~~v~~D~l~d~~~l~~~~-----~~~d~Vi   78 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ-AIPNVTLFQGPLLNNVPLMDTLF-----EGAHLAF   78 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHH-TSTTEEEEESCCTTCHHHHHHHH-----TTCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHh-hcCCcEEEECCccCCHHHHHHHH-----hcCCEEE
Confidence            56899999999999999988888899999999877654  3333 22 2221 124 44433343333     3589999


Q ss_pred             ECCchh------hHHHHHHhccc-C--CEEEEEeccc
Q 042784          240 DNVGGK------MLEAVLNHVNV-H--ARIILCGMIS  267 (356)
Q Consensus       240 d~~g~~------~~~~~~~~l~~-~--G~~v~~g~~~  267 (356)
                      .+.+..      ....+++.++. +  ++++.++...
T Consensus        79 ~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           79 INTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             ECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            876531      11334444333 3  5888887643

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.62  E-value=0.0062  Score=52.29  Aligned_cols=95  Identities=12%  Similarity=0.013  Sum_probs=69.1

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+....+..+.+..  -.|.+++|.|+++.+|..++.++...|++|++..+.                    . .++
T Consensus       131 ~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------------t-~~L  187 (276)
T 3ngx_A          131 LVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------------T-KDI  187 (276)
T ss_dssp             SCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------------C-SCH
T ss_pred             CCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------------c-ccH
Confidence            34555556666666555  579999999996779999999999999998877531                    1 345


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.+++     +|+||.++|.+.+ ---..++++..++.+|...
T Consensus       188 ~~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  225 (276)
T 3ngx_A          188 GSMTRS-----SKIVVVAVGRPGF-LNREMVTPGSVVIDVGINY  225 (276)
T ss_dssp             HHHHHH-----SSEEEECSSCTTC-BCGGGCCTTCEEEECCCEE
T ss_pred             HHhhcc-----CCEEEECCCCCcc-ccHhhccCCcEEEEeccCc
Confidence            555655     8999999997532 1124579999999988754

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.62  E-value=0.0051  Score=57.64  Aligned_cols=92  Identities=16%  Similarity=0.169  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .-.|.+|.|.|. |.+|..+++.++.+|++|++.+++..+..... ..|.. +      .++.+.+     ...|+|+-+
T Consensus       274 ~L~GktVgIIG~-G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-~~G~~-~------~~l~ell-----~~aDiVi~~  339 (494)
T 3d64_A          274 MIAGKIAVVAGY-GDVGKGCAQSLRGLGATVWVTEIDPICALQAA-MEGYR-V------VTMEYAA-----DKADIFVTA  339 (494)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-TTTCE-E------CCHHHHT-----TTCSEEEEC
T ss_pred             ccCCCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-HcCCE-e------CCHHHHH-----hcCCEEEEC
Confidence            356899999996 99999999999999999999998887653444 44543 1      1233333     248999999


Q ss_pred             Cchh-hH-HHHHHhcccCCEEEEEeccc
Q 042784          242 VGGK-ML-EAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       242 ~g~~-~~-~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ++.. .+ ...+..|+++..++.+|...
T Consensus       340 ~~t~~lI~~~~l~~MK~gAilINvgrg~  367 (494)
T 3d64_A          340 TGNYHVINHDHMKAMRHNAIVCNIGHFD  367 (494)
T ss_dssp             SSSSCSBCHHHHHHCCTTEEEEECSSSS
T ss_pred             CCcccccCHHHHhhCCCCcEEEEcCCCc
Confidence            8654 22 46778999999999888744

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.60  E-value=0.0051  Score=57.44  Aligned_cols=92  Identities=17%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      --.|.+|+|.|. |.+|..+++.++.+|++|++.+++..+...+. ..|.. +      .++.+.+     ...|+|+-+
T Consensus       254 ~l~GktVgIIG~-G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-~~g~~-~------~~l~ell-----~~aDiVi~~  319 (479)
T 1v8b_A          254 LISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFN-V------VTLDEIV-----DKGDFFITC  319 (479)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCE-E------CCHHHHT-----TTCSEEEEC
T ss_pred             ccCCCEEEEEee-CHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-HcCCE-e------cCHHHHH-----hcCCEEEEC
Confidence            356899999996 99999999999999999999998887754444 45552 1      1233333     348999999


Q ss_pred             Cchh-hH-HHHHHhcccCCEEEEEeccc
Q 042784          242 VGGK-ML-EAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       242 ~g~~-~~-~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.. .+ ...+..|+++..++.+|...
T Consensus       320 ~~t~~lI~~~~l~~MK~gailiNvgrg~  347 (479)
T 1v8b_A          320 TGNVDVIKLEHLLKMKNNAVVGNIGHFD  347 (479)
T ss_dssp             CSSSSSBCHHHHTTCCTTCEEEECSSTT
T ss_pred             CChhhhcCHHHHhhcCCCcEEEEeCCCC
Confidence            8664 22 46778899999999988643

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.59  E-value=0.0023  Score=54.14  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=49.4

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g  243 (356)
                      +.++||+||+|++|..+++.+...|++|++++++++ .   . ++ .....|..+..++.+.+.++. -+++|+++.+.|
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~---~-~~-~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G---E-DL-IYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S---S-SS-EEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c---c-ce-EEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            578999999999999999888888999999997754 1   1 11 011234444344444443331 136999999886

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.58  E-value=0.0086  Score=53.59  Aligned_cols=76  Identities=14%  Similarity=0.149  Sum_probs=50.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh----------HHHHHHHHHhCCC-ce--eecCChhhHHHHHHHHC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD----------DNVKLLKEEFGYD-DA--FNYNSEMSFDAALTKYF  231 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~----------~~~~~~~~~~g~~-~v--~~~~~~~~~~~~i~~~~  231 (356)
                      +.+|||+||+|.+|..+++.+...|.+|++++++.          +..+.+++..+.. .+  .|..+...+.+.+.+  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~--   79 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK--   79 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHh--
Confidence            46899999999999999988888899999998642          3334443122321 12  244443344444433  


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                       .++|+||.++|
T Consensus        80 -~~~d~vih~A~   90 (348)
T 1ek6_A           80 -YSFMAVIHFAG   90 (348)
T ss_dssp             -CCEEEEEECCS
T ss_pred             -cCCCEEEECCC
Confidence             26999999987

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.56  E-value=0.0031  Score=56.40  Aligned_cols=73  Identities=16%  Similarity=0.161  Sum_probs=48.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      -+|||+||+|.+|...++.+...|.+|++++++.++.+.+. ..+... ..|..+...    +.+.. .++|+||.+++.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~-~~~~~~~~~Dl~d~~~----~~~~~-~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA-YLEPECRVAEMLDHAG----LERAL-RGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGG-GGCCEEEECCTTCHHH----HHHHT-TTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhc-cCCeEEEEecCCCHHH----HHHHH-cCCCEEEECCcc
Confidence            37999999999999999988889999999998876544333 223321 123433222    33322 259999999873

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.55  E-value=0.015  Score=54.81  Aligned_cols=80  Identities=15%  Similarity=0.230  Sum_probs=54.9

Q ss_pred             CCC--CEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChH-------HHHHHHHHhCCCce---eecCChhhHHHHHHH
Q 042784          163 KSG--SNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDD-------NVKLLKEEFGYDDA---FNYNSEMSFDAALTK  229 (356)
Q Consensus       163 ~~g--~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~-------~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~  229 (356)
                      +++  .++||+|++|++|..+++.+...|+ +|+.+.++..       -.+.++ +.|....   .|..+..++.+.+.+
T Consensus       235 ~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~-~~g~~v~~~~~Dvtd~~~v~~~~~~  313 (496)
T 3mje_A          235 RPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELE-QLGVRVTIAACDAADREALAALLAE  313 (496)
T ss_dssp             CCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHH-hcCCeEEEEEccCCCHHHHHHHHHH
Confidence            455  8999999999999999988888899 8888887632       122333 4565322   244444455555555


Q ss_pred             HCC-CCceEEEECCc
Q 042784          230 YFP-NGIDVYLDNVG  243 (356)
Q Consensus       230 ~~~-~~~d~vld~~g  243 (356)
                      +.. +++|.||.+.|
T Consensus       314 i~~~g~ld~vVh~AG  328 (496)
T 3mje_A          314 LPEDAPLTAVFHSAG  328 (496)
T ss_dssp             CCTTSCEEEEEECCC
T ss_pred             HHHhCCCeEEEECCc
Confidence            432 47999999887

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.54  E-value=0.027  Score=46.89  Aligned_cols=75  Identities=9%  Similarity=0.006  Sum_probs=55.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +|+|.|+ |.+|...++.+...|.+|+++++++++.+.+.+.+|.. ++..+.  .-.+.+++..-.++|+++-+++.+
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~-~i~gd~--~~~~~l~~a~i~~ad~vi~~~~~d   76 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT-IIHGDG--SHKEILRDAEVSKNDVVVILTPRD   76 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE-EEESCT--TSHHHHHHHTCCTTCEEEECCSCH
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe-EEEcCC--CCHHHHHhcCcccCCEEEEecCCc
Confidence            5899997 99999999999999999999999999988876456654 332221  112234443334799999999986

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.54  E-value=0.02  Score=47.89  Aligned_cols=93  Identities=6%  Similarity=0.029  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .|.+|||.|+ |.+|...+..+...|++|++++.... ..+.+. +.|.-..+. ..   +..  ..+  .++|+||-++
T Consensus        30 ~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~-~~~~i~~i~-~~---~~~--~dL--~~adLVIaAT   99 (223)
T 3dfz_A           30 KGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVSAEINEWE-AKGQLRVKR-KK---VGE--EDL--LNVFFIVVAT   99 (223)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHH-HTTSCEEEC-SC---CCG--GGS--SSCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-HcCCcEEEE-CC---CCH--hHh--CCCCEEEECC
Confidence            4789999998 99999999999999999998875432 333333 223222221 11   110  011  3699999999


Q ss_pred             chhhHHHHHHhcccCCEEEEEecc
Q 042784          243 GGKMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       243 g~~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +.+..+......+..|..|.+.+.
T Consensus       100 ~d~~~N~~I~~~ak~gi~VNvvD~  123 (223)
T 3dfz_A          100 NDQAVNKFVKQHIKNDQLVNMASS  123 (223)
T ss_dssp             CCTHHHHHHHHHSCTTCEEEC---
T ss_pred             CCHHHHHHHHHHHhCCCEEEEeCC
Confidence            997666555554448888776553

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.53  E-value=0.0082  Score=51.87  Aligned_cols=97  Identities=16%  Similarity=0.078  Sum_probs=68.6

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      -+||+.......+.....--.|.+++|.|++..+|..+.+++...|++|++..+..                     .++
T Consensus       138 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L  196 (288)
T 1b0a_A          138 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNL  196 (288)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCH
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------hhH
Confidence            34555555555555444335799999999966789999999999999988875221                     345


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .+.+++     +|+||-++|.+.+ ---+.++++..++.+|...
T Consensus       197 ~~~~~~-----ADIVI~Avg~p~l-I~~~~vk~GavVIDVgi~r  234 (288)
T 1b0a_A          197 RHHVEN-----ADLLIVAVGKPGF-IPGDWIKEGAIVIDVGINR  234 (288)
T ss_dssp             HHHHHH-----CSEEEECSCCTTC-BCTTTSCTTCEEEECCCEE
T ss_pred             HHHhcc-----CCEEEECCCCcCc-CCHHHcCCCcEEEEccCCc
Confidence            555655     8999999997632 1123478999999998754

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.52  E-value=0.013  Score=55.18  Aligned_cols=82  Identities=16%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHH---H----HHHHHHhCCCc-e--eecCChhhHHHHHHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDN---V----KLLKEEFGYDD-A--FNYNSEMSFDAALTK  229 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~---~----~~~~~~~g~~~-v--~~~~~~~~~~~~i~~  229 (356)
                      .++++.++||+||+|++|..+++.+...|+ +|+.++++...   .    +.++ ..|... +  .|..+..++.+.+.+
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~-~~g~~v~~~~~Dv~d~~~v~~~~~~  300 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELE-ALGARTTVAACDVTDRESVRELLGG  300 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHH-hcCCEEEEEEeCCCCHHHHHHHHHH
Confidence            357889999999999999998888777799 69999887641   1    2233 446431 1  244443455555555


Q ss_pred             HC-CCCceEEEECCc
Q 042784          230 YF-PNGIDVYLDNVG  243 (356)
Q Consensus       230 ~~-~~~~d~vld~~g  243 (356)
                      +. .+.+|.||.+.|
T Consensus       301 i~~~g~ld~VIh~AG  315 (486)
T 2fr1_A          301 IGDDVPLSAVFHAAA  315 (486)
T ss_dssp             SCTTSCEEEEEECCC
T ss_pred             HHhcCCCcEEEECCc
Confidence            42 246899999987

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.51  E-value=0.0067  Score=52.87  Aligned_cols=95  Identities=14%  Similarity=0.136  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh----CC--------CceeecCChhhHHHHHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEF----GY--------DDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~----g~--------~~v~~~~~~~~~~~~i~~  229 (356)
                      ..+.+||..|+  |.|..+..+++. +. +|++++.+++..+.+++.+    +.        ..-+.... .+..+.+..
T Consensus        74 ~~~~~VLdiG~--G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~-~D~~~~l~~  149 (281)
T 1mjf_A           74 PKPKRVLVIGG--GDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-GDGFEFIKN  149 (281)
T ss_dssp             SCCCEEEEEEC--TTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-SCHHHHHHH
T ss_pred             CCCCeEEEEcC--CcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE-CchHHHhcc
Confidence            45689999994  557778888887 65 9999999999999988655    21        11111111 333333443


Q ss_pred             HCCCCceEEEECCc-----------hhhHHHHHHhcccCCEEEEE
Q 042784          230 YFPNGIDVYLDNVG-----------GKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       230 ~~~~~~d~vld~~g-----------~~~~~~~~~~l~~~G~~v~~  263 (356)
                        .+.+|+|+-...           .+.+..+.+.|+++|.++..
T Consensus       150 --~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          150 --NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             --CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             --cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence              457999984322           23578889999999998865

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.51  E-value=0.0086  Score=52.60  Aligned_cols=75  Identities=19%  Similarity=0.241  Sum_probs=51.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC------hHHHHHHHH--HhCCCc-eeecCChhhHHHHHHHHCCCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS------DDNVKLLKE--EFGYDD-AFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s------~~~~~~~~~--~~g~~~-v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ..+|+|+||+|.+|...++.+...|.+|++++++      +++.+.++.  ..|... ..|..+..++.+.++     ++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~-----~~   78 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK-----NV   78 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH-----TC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc-----CC
Confidence            4679999999999999999988899999999886      334333331  224321 134544344444443     48


Q ss_pred             eEEEECCch
Q 042784          236 DVYLDNVGG  244 (356)
Q Consensus       236 d~vld~~g~  244 (356)
                      |+||.+++.
T Consensus        79 d~vi~~a~~   87 (308)
T 1qyc_A           79 DVVISTVGS   87 (308)
T ss_dssp             SEEEECCCG
T ss_pred             CEEEECCcc
Confidence            999999985

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.50  E-value=0.019  Score=50.69  Aligned_cols=100  Identities=12%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCCceEE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      ++++++||=.|+  |.|..+..+++..|++|++++.+++..+.+++.   .|....+.... .++.+ + .+..+.||+|
T Consensus       115 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~-~-~~~~~~fD~V  189 (312)
T 3vc1_A          115 AGPDDTLVDAGC--GRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRV-CNMLD-T-PFDKGAVTAS  189 (312)
T ss_dssp             CCTTCEEEEESC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-CCTTS-C-CCCTTCEEEE
T ss_pred             CCCCCEEEEecC--CCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE-CChhc-C-CCCCCCEeEE
Confidence            789999999994  458888888888789999999999988877642   34321111110 11110 0 0123579999


Q ss_pred             EECCc------hhhHHHHHHhcccCCEEEEEecc
Q 042784          239 LDNVG------GKMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       239 ld~~g------~~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +....      ...+..+.+.|+|+|+++.....
T Consensus       190 ~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          190 WNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            87432      23788899999999999976543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.50  E-value=0.0091  Score=51.77  Aligned_cols=101  Identities=7%  Similarity=0.072  Sum_probs=69.7

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHh----CCCceeecCChhhHHHHHHHHC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEF----GYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~----g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      ....++++++||-.|+ | .|..++.+++..  +.+|++++.+++..+.+++.+    |...+ .... .++.+   .+.
T Consensus       104 ~~~~~~~~~~VLD~G~-G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v-~~~~-~d~~~---~~~  176 (275)
T 1yb2_A          104 MRCGLRPGMDILEVGV-G-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV-RTSR-SDIAD---FIS  176 (275)
T ss_dssp             --CCCCTTCEEEEECC-T-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE-EEEC-SCTTT---CCC
T ss_pred             HHcCCCCcCEEEEecC-C-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcE-EEEE-Cchhc---cCc
Confidence            4566889999999985 4 688888888873  569999999999888887443    53322 1111 22211   112


Q ss_pred             CCCceEEEECCch--hhHHHHHHhcccCCEEEEEec
Q 042784          232 PNGIDVYLDNVGG--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       232 ~~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .+.+|+|+.....  ..+..+.+.|+++|.++....
T Consensus       177 ~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          177 DQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             SCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             CCCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3469999986654  378899999999999887643

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.50  E-value=0.0089  Score=49.46  Aligned_cols=99  Identities=16%  Similarity=0.111  Sum_probs=68.5

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEE
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      ...+.++.+||-.|+ | .|..+..+++. |.+|++++.+++..+.++ +.+...+--..  .++.+ +  ...+.+|+|
T Consensus        41 l~~~~~~~~vLdiG~-G-~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~--~d~~~-~--~~~~~~D~v  111 (218)
T 3ou2_A           41 LRAGNIRGDVLELAS-G-TGYWTRHLSGL-ADRVTALDGSAEMIAEAG-RHGLDNVEFRQ--QDLFD-W--TPDRQWDAV  111 (218)
T ss_dssp             HTTTTSCSEEEEESC-T-TSHHHHHHHHH-SSEEEEEESCHHHHHHHG-GGCCTTEEEEE--CCTTS-C--CCSSCEEEE
T ss_pred             HhcCCCCCeEEEECC-C-CCHHHHHHHhc-CCeEEEEeCCHHHHHHHH-hcCCCCeEEEe--ccccc-C--CCCCceeEE
Confidence            345788899999995 3 47788888887 889999999999999998 55633221111  11111 1  224579999


Q ss_pred             EECCch---------hhHHHHHHhcccCCEEEEEecc
Q 042784          239 LDNVGG---------KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       239 ld~~g~---------~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +....-         ..+..+.+.|+++|.++.....
T Consensus       112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            975431         2577888999999999877543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.49  E-value=0.015  Score=50.56  Aligned_cols=91  Identities=10%  Similarity=0.001  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHCCCCceEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      -.+.+++|+|+ |++|.+++..+...|+ +|++..++.++.+.+.++++..   .+..+.   +       +. ..+|+|
T Consensus       124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~---~-------l~-~~aDiI  191 (281)
T 3o8q_A          124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE---Q-------LK-QSYDVI  191 (281)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG---G-------CC-SCEEEE
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH---H-------hc-CCCCEE
Confidence            35889999997 9999999998888997 9999999998877766566531   222221   1       11 469999


Q ss_pred             EECCchhhHHH----HHHhcccCCEEEEEec
Q 042784          239 LDNVGGKMLEA----VLNHVNVHARIILCGM  265 (356)
Q Consensus       239 ld~~g~~~~~~----~~~~l~~~G~~v~~g~  265 (356)
                      |+|++......    ....++++..++.+..
T Consensus       192 InaTp~gm~~~~~~l~~~~l~~~~~V~DlvY  222 (281)
T 3o8q_A          192 INSTSASLDGELPAIDPVIFSSRSVCYDMMY  222 (281)
T ss_dssp             EECSCCCC----CSCCGGGEEEEEEEEESCC
T ss_pred             EEcCcCCCCCCCCCCCHHHhCcCCEEEEecC
Confidence            99987542111    1234555555555543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.48  E-value=0.011  Score=53.19  Aligned_cols=74  Identities=16%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH----HHHHHHHHhC-----CCcee--ecCChhhHHHHHHHHCCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD----NVKLLKEEFG-----YDDAF--NYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~----~~~~~~~~~g-----~~~v~--~~~~~~~~~~~i~~~~~~  233 (356)
                      +.+|||+||+|.+|..+++.+...|.+|++++++..    +.+.+.+.+.     ...++  |..+...+.+.+     .
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~  101 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC-----A  101 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH-----T
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHh-----c
Confidence            578999999999999999988888999999997642    3333332221     11122  343323333333     2


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+||.+++
T Consensus       102 ~~d~vih~A~  111 (352)
T 1sb8_A          102 GVDYVLHQAA  111 (352)
T ss_dssp             TCSEEEECCS
T ss_pred             CCCEEEECCc
Confidence            6999999987

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.48  E-value=0.014  Score=51.60  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=67.0

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .+||+.|  +|.|..+..+++.. +.+|++++.+++-.+.+++.++..  .-+.... .+..+.+.+...+.||+||-..
T Consensus        91 ~rVLdIG--~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~-~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLG--GGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRV-DDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEES--CGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEE-SCHHHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEE--CCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEE-CcHHHHHhhccCCCCCEEEECC
Confidence            3999999  56788888999865 679999999999999998666532  1111111 3444445544446799998532


Q ss_pred             c-----------hhhHHHHHHhcccCCEEEEEe
Q 042784          243 G-----------GKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       243 g-----------~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      -           .+.+..+.+.|+++|.++...
T Consensus       168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            1           136788999999999987543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.48  E-value=0.0012  Score=58.23  Aligned_cols=119  Identities=17%  Similarity=0.065  Sum_probs=73.5

Q ss_pred             cccCchhhhHHHHHHHh---------CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH-HHHHHHhCCC
Q 042784          143 SSLGIPGFAAWVGIEVL---------GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV-KLLKEEFGYD  212 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~---------~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~-~~~~~~~g~~  212 (356)
                      .-+||+...+...+.+.         ..--.|.+++|.|++..+|..+++++...|++|++..++..+. +... +++..
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~-~la~~  224 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGE-SLKLN  224 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCC-CSSCC
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHH-HHhhh
Confidence            34555556666666552         2123689999999844679999999999999999887653221 1111 33321


Q ss_pred             -cee-ec--CChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          213 -DAF-NY--NSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       213 -~v~-~~--~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                       +.. .+  .+..++.+.+++     +|+||.++|.+.+----..++++..++.+|...
T Consensus       225 ~~~~t~~~~t~~~~L~e~l~~-----ADIVIsAtg~p~~vI~~e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          225 KHHVEDLGEYSEDLLKKCSLD-----SDVVITGVPSENYKFPTEYIKEGAVCINFACTK  278 (320)
T ss_dssp             CCEEEEEEECCHHHHHHHHHH-----CSEEEECCCCTTCCBCTTTSCTTEEEEECSSSC
T ss_pred             cccccccccccHhHHHHHhcc-----CCEEEECCCCCcceeCHHHcCCCeEEEEcCCCc
Confidence             111 00  111456666765     899999999863211123468887888887753

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.47  E-value=0.011  Score=56.37  Aligned_cols=82  Identities=15%  Similarity=0.087  Sum_probs=54.6

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEE-eCCh-------------HH----HHHHHHHhCCCc---eeecC
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGS-TGSD-------------DN----VKLLKEEFGYDD---AFNYN  218 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~-~~s~-------------~~----~~~~~~~~g~~~---v~~~~  218 (356)
                      .++++.++||+||+|++|..+++.+...|++ |+.+ .++.             ++    .+.++ +.|...   ..|..
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~v~~~~~Dvt  325 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELA-DLGATATVVTCDLT  325 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHH-HHTCEEEEEECCTT
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHH-hcCCEEEEEECCCC
Confidence            3578899999999999999988888778995 6666 6662             22    23333 456531   12444


Q ss_pred             ChhhHHHHHHHHC-CCCceEEEECCc
Q 042784          219 SEMSFDAALTKYF-PNGIDVYLDNVG  243 (356)
Q Consensus       219 ~~~~~~~~i~~~~-~~~~d~vld~~g  243 (356)
                      +..++.+.+.++. .+.+|.||.+.|
T Consensus       326 d~~~v~~~~~~i~~~g~id~vVh~AG  351 (525)
T 3qp9_A          326 DAEAAARLLAGVSDAHPLSAVLHLPP  351 (525)
T ss_dssp             SHHHHHHHHHTSCTTSCEEEEEECCC
T ss_pred             CHHHHHHHHHHHHhcCCCcEEEECCc
Confidence            4445555555543 247999999988

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.47  E-value=0.0051  Score=52.48  Aligned_cols=102  Identities=15%  Similarity=0.128  Sum_probs=68.8

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC-
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF-  231 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~-  231 (356)
                      +.....+.++.+||=.|+ | .|..+..+++..|.+|++++.+++..+.+++.   .|...-+.... .++.    ++. 
T Consensus        28 l~~~~~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~-~d~~----~~~~  100 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGS-G-SGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH-NDAA----GYVA  100 (256)
T ss_dssp             HHHHTCCCTTCEEEEETC-T-TCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-SCCT----TCCC
T ss_pred             HHHhcCCCCCCEEEEECC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE-CChH----hCCc
Confidence            334567889999999995 4 48888999998899999999999888777642   34321111110 1111    111 


Q ss_pred             CCCceEEEECCc-----h--hhHHHHHHhcccCCEEEEEe
Q 042784          232 PNGIDVYLDNVG-----G--KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       232 ~~~~d~vld~~g-----~--~~~~~~~~~l~~~G~~v~~g  264 (356)
                      .+.||+|+....     .  ..+..+.+.|+|+|+++...
T Consensus       101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          101 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            356999996321     1  26788889999999988754

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.45  E-value=0.062  Score=44.08  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC---------------C--cee--ecCCh
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY---------------D--DAF--NYNSE  220 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~---------------~--~v~--~~~~~  220 (356)
                      ..+.++.+||-.|.  |.|..+..+++. |++|++++.|++..+.+++..+.               .  ..+  |..+ 
T Consensus        18 l~~~~~~~vLD~GC--G~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-   93 (203)
T 1pjz_A           18 LNVVPGARVLVPLC--GKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA-   93 (203)
T ss_dssp             HCCCTTCEEEETTT--CCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS-
T ss_pred             cccCCCCEEEEeCC--CCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc-
Confidence            34678999999985  456777778876 89999999999999998865432               1  111  1111 


Q ss_pred             hhHHHHHHHHCCCCceEEEECCc-----h----hhHHHHHHhcccCCEEEEE
Q 042784          221 MSFDAALTKYFPNGIDVYLDNVG-----G----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       221 ~~~~~~i~~~~~~~~d~vld~~g-----~----~~~~~~~~~l~~~G~~v~~  263 (356)
                      -.+.. .     +.||+|++...     .    ..+..+.+.|+|+|+++++
T Consensus        94 l~~~~-~-----~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           94 LTARD-I-----GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             STHHH-H-----HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             CCccc-C-----CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            11110 0     35999997332     1    1567788999999994444

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.44  E-value=0.0022  Score=54.58  Aligned_cols=76  Identities=17%  Similarity=0.113  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHH-CCCEEEEEeCChH-HHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKL-KGCKVVGSTGSDD-NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~-~G~~V~~~~~s~~-~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .++++||+||+|++|.++++.+.. .|++|+..+++++ ..+.+.     ....|..+..++.+.+..+..+++|+++.+
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~~~~-----~~~~Dv~~~~~v~~~~~~~~~~~id~lv~n   77 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLK-----FIKADLTKQQDITNVLDIIKNVSFDGIFLN   77 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCTTEE-----EEECCTTCHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccccce-----EEecCcCCHHHHHHHHHHHHhCCCCEEEEC
Confidence            467899999999999998866665 7889998886654 211110     112344444455555543334579999999


Q ss_pred             Cch
Q 042784          242 VGG  244 (356)
Q Consensus       242 ~g~  244 (356)
                      .|.
T Consensus        78 Ag~   80 (244)
T 4e4y_A           78 AGI   80 (244)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            883

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.42  E-value=0.014  Score=54.47  Aligned_cols=93  Identities=13%  Similarity=0.135  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +.+|+|+| +|++|.++++.+...|.+|++.+++.++.+.+.+.++....  .|..+..++.+.+     .++|+|+.|+
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l-----~~~DvVIn~a   76 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEV-----AKHDLVISLI   76 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHH-----TTSSEEEECC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHH-----cCCcEEEECC
Confidence            57899998 59999999988888899999999988877665434432112  2333323333333     2599999999


Q ss_pred             chh-hHHHHHHhcccCCEEEEE
Q 042784          243 GGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       243 g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      +.. .......+++++.+++..
T Consensus        77 ~~~~~~~i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           77 PYTFHATVIKSAIRQKKHVVTT   98 (450)
T ss_dssp             C--CHHHHHHHHHHHTCEEEES
T ss_pred             ccccchHHHHHHHhCCCeEEEe
Confidence            864 222344556666666544

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.42  E-value=0.01  Score=52.51  Aligned_cols=74  Identities=14%  Similarity=0.123  Sum_probs=51.3

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHH--HHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLK--EEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~--~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .+|||+||+|.+|..+++.+...|.+|++++++.+ +.+.++  ...|... ..|..+..++.+.+     .++|+||.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~-----~~~d~vi~~   86 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELM-----KKVDVVISA   86 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHH-----TTCSEEEEC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHH-----cCCCEEEEC
Confidence            47999999999999999998889999999998764 333322  1335431 23454433344333     359999999


Q ss_pred             Cch
Q 042784          242 VGG  244 (356)
Q Consensus       242 ~g~  244 (356)
                      ++.
T Consensus        87 a~~   89 (318)
T 2r6j_A           87 LAF   89 (318)
T ss_dssp             CCG
T ss_pred             Cch
Confidence            885

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.42  E-value=0.021  Score=49.63  Aligned_cols=102  Identities=11%  Similarity=0.061  Sum_probs=70.0

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHCC
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      +....++.++.+||-.|+ | .|..+..+++..|++|++++.+++..+.+++.+   |...-+.... .++    .++. 
T Consensus        56 ~~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~-~d~----~~~~-  127 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGC-G-WGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL-AGW----EQFD-  127 (287)
T ss_dssp             HHTTTTCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE-SCG----GGCC-
T ss_pred             HHHHcCCCCcCEEEEECC-c-ccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE-CCh----hhCC-
Confidence            444566789999999995 4 488888999777999999999999888887432   3221121111 122    1222 


Q ss_pred             CCceEEEEC-----Cch----hhHHHHHHhcccCCEEEEEec
Q 042784          233 NGIDVYLDN-----VGG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 ~~~d~vld~-----~g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +.+|+|+..     .+.    ..+..+.+.|+|+|.++....
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            569999864     221    367888999999999886544

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.41  E-value=0.013  Score=51.88  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCC------CceeecCChhhHHHHHHHHCCCCc
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGY------DDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~------~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ..+.+||+.|  +|.|..+..+++..+ .+|++++.+++-.+.+++.+..      +.-+.... .+..+.+.. ..+.|
T Consensus       107 ~~~~~VLdIG--~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~f  182 (314)
T 2b2c_A          107 PDPKRVLIIG--GGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC-GDGFEFLKN-HKNEF  182 (314)
T ss_dssp             SSCCEEEEES--CTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC-SCHHHHHHH-CTTCE
T ss_pred             CCCCEEEEEc--CCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEE-ChHHHHHHh-cCCCc
Confidence            3568999999  456778888888764 5999999999999998855432      11122211 344444443 34579


Q ss_pred             eEEEECCc-----------hhhHHHHHHhcccCCEEEEEe
Q 042784          236 DVYLDNVG-----------GKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       236 d~vld~~g-----------~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      |+|+....           .+.+..+.+.|+++|.++.-.
T Consensus       183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          183 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            99985431           236778889999999988653

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.41  E-value=0.0057  Score=53.36  Aligned_cols=64  Identities=13%  Similarity=0.204  Sum_probs=46.8

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .+..+|||+||+|.+|..+++.+...|.+|++++++.               .|..+...+.+.+.+.   ++|+||.+.
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------------~Dl~d~~~~~~~~~~~---~~d~vih~A   71 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEK---KPNVVINCA   71 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHH---CCSEEEECC
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCcc---------------CCCCCHHHHHHHHHhc---CCCEEEECC
Confidence            5678999999999999999998888899999998641               2334434444444432   589999988


Q ss_pred             ch
Q 042784          243 GG  244 (356)
Q Consensus       243 g~  244 (356)
                      |.
T Consensus        72 ~~   73 (292)
T 1vl0_A           72 AH   73 (292)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.40  E-value=0.013  Score=51.63  Aligned_cols=70  Identities=17%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      .+|||+||+|.+|...++.+...|.+|+++++++.+.+ +.   +.. ++..+  -. .+.+.+.. .++|+||.+++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~---~~~-~~~~D--l~-~~~~~~~~-~~~d~Vih~a~~   72 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN---DYE-YRVSD--YT-LEDLINQL-NDVDAVVHLAAT   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCE-EEECC--CC-HHHHHHHT-TTCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC---ceE-EEEcc--cc-HHHHHHhh-cCCCEEEEcccc
Confidence            68999999999999999999999999999998855444 32   332 22221  12 33444433 279999999873

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.39  E-value=0.1  Score=46.94  Aligned_cols=137  Identities=7%  Similarity=-0.013  Sum_probs=82.1

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC--CCEEE-EEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK--GCKVV-GSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~--G~~V~-~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -+|.|.|. |.+|...+..++..  +++++ +.++++++.+.+.+++|. .++     .++.+.+.+   ..+|+|+.|+
T Consensus        14 ~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~-~~~-----~~~~~ll~~---~~~D~V~i~t   83 (354)
T 3q2i_A           14 IRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA-RGH-----ASLTDMLAQ---TDADIVILTT   83 (354)
T ss_dssp             EEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCC-EEE-----SCHHHHHHH---CCCSEEEECS
T ss_pred             ceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCC-cee-----CCHHHHhcC---CCCCEEEECC
Confidence            47999997 99998877766665  67776 445677777776658886 232     344444443   4699999999


Q ss_pred             chh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh-hccceEE-EEEecccccchHHHHHHHHHHHHHcCC
Q 042784          243 GGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM-IGKEVKM-EGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       243 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      ... +...+..+++.+.+ +++..+....     ......+... -.++..+ .++.     .++...++.+.+++++|.
T Consensus        84 p~~~h~~~~~~al~~gk~-v~~EKP~a~~-----~~~~~~l~~~a~~~g~~~~v~~~-----~r~~p~~~~~k~~i~~g~  152 (354)
T 3q2i_A           84 PSGLHPTQSIECSEAGFH-VMTEKPMATR-----WEDGLEMVKAADKAKKHLFVVKQ-----NRRNATLQLLKRAMQEKR  152 (354)
T ss_dssp             CGGGHHHHHHHHHHTTCE-EEECSSSCSS-----HHHHHHHHHHHHHHTCCEEECCG-----GGGSHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHCCCC-EEEeCCCcCC-----HHHHHHHHHHHHHhCCeEEEEEc-----ccCCHHHHHHHHHHhcCC
Confidence            886 66677777777655 4465443211     0011111111 1223322 2221     123346788889999987


Q ss_pred             eeee
Q 042784          320 IRSK  323 (356)
Q Consensus       320 i~~~  323 (356)
                      +-..
T Consensus       153 iG~i  156 (354)
T 3q2i_A          153 FGRI  156 (354)
T ss_dssp             TCSE
T ss_pred             CCce
Confidence            7543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.38  E-value=0.0092  Score=52.64  Aligned_cols=99  Identities=13%  Similarity=0.015  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhC-------CCceeecCChhhHHHHHHHHCCC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFG-------YDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g-------~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ..++.+||+.|  +|.|..+..+++..+ .+|++++.+++-.+.+++.+.       ... +.... .+..+.+.+...+
T Consensus        93 ~~~~~~VLdiG--~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~-v~~~~-~D~~~~~~~~~~~  168 (304)
T 3bwc_A           93 HPKPERVLIIG--GGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPR-ATVRV-GDGLAFVRQTPDN  168 (304)
T ss_dssp             SSSCCEEEEEE--CTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTT-EEEEE-SCHHHHHHSSCTT
T ss_pred             CCCCCeEEEEc--CCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCc-EEEEE-CcHHHHHHhccCC
Confidence            35678999999  455777888888764 499999999988888875431       111 11111 3344333322345


Q ss_pred             CceEEEECCc-----------hhhHHHHHHhcccCCEEEEEe
Q 042784          234 GIDVYLDNVG-----------GKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       234 ~~d~vld~~g-----------~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      .||+|+....           .+.+..+.+.|+++|.++...
T Consensus       169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             CEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            7999985331           246788899999999998764

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.38  E-value=0.009  Score=53.27  Aligned_cols=75  Identities=23%  Similarity=0.239  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH--HhCC----Cce--eecCChhhHHHHHHHHCCCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE--EFGY----DDA--FNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~--~~g~----~~v--~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++.++.+.+..  .+..    ..+  .|..+..++.+.+     .++
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   78 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAI-----KGC   78 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHH-----TTC
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHH-----cCC
Confidence            46799999999999999998888899999998887653322220  1211    011  2334323344433     258


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+||.+++
T Consensus        79 d~Vih~A~   86 (337)
T 2c29_D           79 TGVFHVAT   86 (337)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEecc
Confidence            99999875

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.38  E-value=0.077  Score=47.67  Aligned_cols=138  Identities=13%  Similarity=0.107  Sum_probs=82.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC-CCEEEEE-eCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK-GCKVVGS-TGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~-~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      -+|.|.|. |.+|...+..++.. +++++++ ++++++.+.+.+++|...   |   .++.+.+.+   ..+|+|+.|+.
T Consensus         6 ~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~---~---~~~~~~l~~---~~~D~V~i~tp   75 (354)
T 3db2_A            6 VGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAG---D---ATMEALLAR---EDVEMVIITVP   75 (354)
T ss_dssp             EEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCC---C---SSHHHHHHC---SSCCEEEECSC
T ss_pred             ceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCC---c---CCHHHHhcC---CCCCEEEEeCC
Confidence            47999997 99998877776665 7787654 566777776665788753   3   334444432   46999999998


Q ss_pred             hh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEEEEEecccccchHHHHHHHHHHHHHcCCee
Q 042784          244 GK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       244 ~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      .. +...+..+++.+.+ +++..+....     ......+.... .+++.+.-..    ..++...++.+.+++++|.+-
T Consensus        76 ~~~h~~~~~~al~~gk~-vl~EKP~~~~-----~~~~~~l~~~a~~~~~~~~v~~----~~R~~p~~~~~k~~i~~g~iG  145 (354)
T 3db2_A           76 NDKHAEVIEQCARSGKH-IYVEKPISVS-----LDHAQRIDQVIKETGVKFLCGH----SSRRLGALRKMKEMIDTKEIG  145 (354)
T ss_dssp             TTSHHHHHHHHHHTTCE-EEEESSSCSS-----HHHHHHHHHHHHHHCCCEEEEC----GGGGSHHHHHHHHHHHTTTTC
T ss_pred             hHHHHHHHHHHHHcCCE-EEEccCCCCC-----HHHHHHHHHHHHHcCCeEEEee----chhcCHHHHHHHHHHhcCCCC
Confidence            86 67777778877655 4465543311     01111111111 2233332211    122335677888899998875


Q ss_pred             ee
Q 042784          322 SK  323 (356)
Q Consensus       322 ~~  323 (356)
                      ..
T Consensus       146 ~i  147 (354)
T 3db2_A          146 EV  147 (354)
T ss_dssp             CE
T ss_pred             Ce
Confidence            43

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.37  E-value=0.0049  Score=55.27  Aligned_cols=69  Identities=17%  Similarity=0.216  Sum_probs=47.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      ..+.+|||+||+|.+|..+++.+...|.+|+++++++++       .+... ..|..+...+.+.+     .++|+||.+
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~-----~~~d~vih~   84 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAI-----MGVSAVLHL   84 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHH-----TTCSEEEEC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHH-----hCCCEEEEC
Confidence            456789999999999999999999999999999987654       12221 23444433343333     269999998


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .+
T Consensus        85 A~   86 (347)
T 4id9_A           85 GA   86 (347)
T ss_dssp             CC
T ss_pred             Cc
Confidence            76

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.36  E-value=0.0091  Score=50.07  Aligned_cols=98  Identities=13%  Similarity=0.036  Sum_probs=67.6

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHCCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ....+.++++||-.|+ |. |..+..+++.. .+|++++.+++..+.+++.+...   .++..    +..+.+.  ..+.
T Consensus        64 ~~~~~~~~~~vLdiG~-G~-G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~----d~~~~~~--~~~~  134 (231)
T 1vbf_A           64 DELDLHKGQKVLEIGT-GI-GYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILG----DGTLGYE--EEKP  134 (231)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEES----CGGGCCG--GGCC
T ss_pred             HhcCCCCCCEEEEEcC-CC-CHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEEC----Ccccccc--cCCC
Confidence            4567889999999995 54 88888888874 89999999999999888544321   12211    1111111  1256


Q ss_pred             ceEEEECCchh-hHHHHHHhcccCCEEEEEe
Q 042784          235 IDVYLDNVGGK-MLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       235 ~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g  264 (356)
                      +|+|+....-. ....+.+.|+++|+++..-
T Consensus       135 fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          135 YDRVVVWATAPTLLCKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             EEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCcHHHHHHHHHHHcCCCcEEEEEE
Confidence            99999776543 3467888999999988663

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.36  E-value=0.01  Score=51.63  Aligned_cols=100  Identities=14%  Similarity=0.018  Sum_probs=65.6

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC
Q 042784          153 WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       153 ~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      ..+|.+..---.+.+++|+|+ |++|.+++..+...|+ +|+++.++.++.+.+.+.++   ...+   .+    +.++ 
T Consensus       110 ~~~L~~~~~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~---~~~~---~~----l~~l-  177 (282)
T 3fbt_A          110 GKMLSKFRVEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK---VISY---DE----LSNL-  177 (282)
T ss_dssp             HHHHHHTTCCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSE---EEEH---HH----HTTC-
T ss_pred             HHHHHHcCCCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcC---cccH---HH----HHhc-
Confidence            344543232235889999997 9999999999999999 99999999988776653332   2222   12    2221 


Q ss_pred             CCCceEEEECCchhh------HHHHHHhcccCCEEEEEecc
Q 042784          232 PNGIDVYLDNVGGKM------LEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       232 ~~~~d~vld~~g~~~------~~~~~~~l~~~G~~v~~g~~  266 (356)
                        .+|+||+|+....      .......++++..++.+...
T Consensus       178 --~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~  216 (282)
T 3fbt_A          178 --KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYN  216 (282)
T ss_dssp             --CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCS
T ss_pred             --cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeC
Confidence              5899999985321      11134456777777666543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.35  E-value=0.0076  Score=53.89  Aligned_cols=99  Identities=16%  Similarity=0.091  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhC-----C-CceeecCChhhHHHHHHHHCCCC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFG-----Y-DDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g-----~-~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ...+.+||..|  +|.|..+..+++..+ .+|++++.+++-.+.+++.+.     . +.-+.... .+..+.+.....+.
T Consensus       118 ~~~~~~VLdIG--~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~-~D~~~~l~~~~~~~  194 (334)
T 1xj5_A          118 IPNPKKVLVIG--GGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI-GDGVAFLKNAAEGS  194 (334)
T ss_dssp             SSCCCEEEEET--CSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE-SCHHHHHHTSCTTC
T ss_pred             CCCCCEEEEEC--CCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE-CCHHHHHHhccCCC
Confidence            45678999999  456777888888765 599999999998888875331     1 11111111 34444444333457


Q ss_pred             ceEEEECCc-----------hhhHHHHHHhcccCCEEEEE
Q 042784          235 IDVYLDNVG-----------GKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       235 ~d~vld~~g-----------~~~~~~~~~~l~~~G~~v~~  263 (356)
                      ||+|+-...           ...+..+.+.|+++|.++.-
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            999985321           23678889999999999875

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.34  E-value=0.0073  Score=54.30  Aligned_cols=90  Identities=20%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++.+|++|++.+++....+.++ +.|...+      .++.+.+.+     .|+|+-++.
T Consensus       163 ~gktvGIIG~-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~------~~l~ell~~-----aDvV~l~~P  229 (351)
T 3jtm_A          163 EGKTIGTVGA-GRIGKLLLQRLKPFGCNLLYHDRLQMAPELEK-ETGAKFV------EDLNEMLPK-----CDVIVINMP  229 (351)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCEEEEECSSCCCHHHHH-HHCCEEC------SCHHHHGGG-----CSEEEECSC
T ss_pred             cCCEEeEEEe-CHHHHHHHHHHHHCCCEEEEeCCCccCHHHHH-hCCCeEc------CCHHHHHhc-----CCEEEECCC
Confidence            5889999996 99999999999999999999998766666666 6675321      234444433     789988776


Q ss_pred             hh------hHHHHHHhcccCCEEEEEecc
Q 042784          244 GK------MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~~------~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ..      .-...+..|+++..++.++..
T Consensus       230 lt~~t~~li~~~~l~~mk~gailIN~aRG  258 (351)
T 3jtm_A          230 LTEKTRGMFNKELIGKLKKGVLIVNNARG  258 (351)
T ss_dssp             CCTTTTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred             CCHHHHHhhcHHHHhcCCCCCEEEECcCc
Confidence            31      225667788888888887653

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.34  E-value=0.12  Score=45.89  Aligned_cols=135  Identities=15%  Similarity=0.214  Sum_probs=80.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEE-EeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVG-STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~-~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|.|.|. |.+|...+..++.. ++++++ .++++++.+.+.+++|..    +.   ++.+.+.+   ..+|+|+.|+..
T Consensus         5 ~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~----~~---~~~~~l~~---~~~D~V~i~tp~   73 (331)
T 4hkt_A            5 RFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE----VR---TIDAIEAA---ADIDAVVICTPT   73 (331)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE----EC---CHHHHHHC---TTCCEEEECSCG
T ss_pred             EEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC----cC---CHHHHhcC---CCCCEEEEeCCc
Confidence            6899997 99998877766665 778775 566777777666577764    33   34444432   369999999987


Q ss_pred             h-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh-hccceEEEEEecccccchHHHHHHHHHHHHHcCCeee
Q 042784          245 K-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM-IGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS  322 (356)
Q Consensus       245 ~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~  322 (356)
                      . +...+..+++.+.+ +++..+....     ......+... -.+++.+.-...    .++...++.+.+++.+|.+-.
T Consensus        74 ~~h~~~~~~al~~gk~-v~~EKP~~~~-----~~~~~~l~~~a~~~g~~~~v~~~----~r~~p~~~~~~~~i~~g~iG~  143 (331)
T 4hkt_A           74 DTHADLIERFARAGKA-IFCEKPIDLD-----AERVRACLKVVSDTKAKLMVGFN----RRFDPHFMAVRKAIDDGRIGE  143 (331)
T ss_dssp             GGHHHHHHHHHHTTCE-EEECSCSCSS-----HHHHHHHHHHHHHTTCCEEECCG----GGGCHHHHHHHHHHHTTTTCS
T ss_pred             hhHHHHHHHHHHcCCc-EEEecCCCCC-----HHHHHHHHHHHHHcCCeEEEccc----ccCCHHHHHHHHHHHcCCCCc
Confidence            5 66777777777655 5565443211     1111111111 123333322111    223355778888999887643

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.31  E-value=0.0093  Score=51.34  Aligned_cols=97  Identities=19%  Similarity=0.113  Sum_probs=67.1

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      -+||+...++..+.+...--.|.+++|.|++..+|..+.+++...  |++|++..+..                     .
T Consensus       137 ~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------------------~  195 (281)
T 2c2x_A          137 PLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------------------R  195 (281)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------------------S
T ss_pred             CCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------------------h
Confidence            345555555555554442347899999998556899999999999  88988764221                     3


Q ss_pred             hHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          222 SFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       222 ~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ++.+.++     .+|+||-++|.+.+ ---+.++++..++.+|...
T Consensus       196 ~L~~~~~-----~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~r  235 (281)
T 2c2x_A          196 DLPALTR-----QADIVVAAVGVAHL-LTADMVRPGAAVIDVGVSR  235 (281)
T ss_dssp             CHHHHHT-----TCSEEEECSCCTTC-BCGGGSCTTCEEEECCEEE
T ss_pred             HHHHHHh-----hCCEEEECCCCCcc-cCHHHcCCCcEEEEccCCC
Confidence            3444453     38999999998643 2234578888999888764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.31  E-value=0.011  Score=49.58  Aligned_cols=101  Identities=10%  Similarity=0.102  Sum_probs=66.7

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCC-Cceee-cCChhhHHHHHHHHCCCCc
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGY-DDAFN-YNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~-~~v~~-~~~~~~~~~~i~~~~~~~~  235 (356)
                      ...++++++||-.|+ |. |..+..+++..| .+|++++.+++..+.+++.... ..+.. ..+..... ..... .+.+
T Consensus        69 ~~~~~~~~~VLDlGc-G~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~-~~~~  144 (230)
T 1fbn_A           69 VMPIKRDSKILYLGA-SA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ-EYANI-VEKV  144 (230)
T ss_dssp             CCCCCTTCEEEEESC-CS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG-GGTTT-SCCE
T ss_pred             ccCCCCCCEEEEEcc-cC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcc-ccccc-CccE
Confidence            345678999999995 54 888999999987 5999999999988887743221 11111 11101100 00011 2469


Q ss_pred             eEEEECCchh-----hHHHHHHhcccCCEEEEE
Q 042784          236 DVYLDNVGGK-----MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       236 d~vld~~g~~-----~~~~~~~~l~~~G~~v~~  263 (356)
                      |+|+......     .+..+.+.|+|+|+++..
T Consensus       145 D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            9999665432     478888999999999876

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.31  E-value=0.016  Score=52.18  Aligned_cols=88  Identities=16%  Similarity=0.143  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++..|++|++.+++. +.+.+. +.|..    +.  .++.+.+.+     .|+|+-++.
T Consensus       159 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~~~-~~g~~----~~--~~l~ell~~-----aDiV~l~~P  224 (352)
T 3gg9_A          159 KGQTLGIFGY-GKIGQLVAGYGRAFGMNVLVWGREN-SKERAR-ADGFA----VA--ESKDALFEQ-----SDVLSVHLR  224 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSHH-HHHHHH-HTTCE----EC--SSHHHHHHH-----CSEEEECCC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEEEECCCC-CHHHHH-hcCce----Ee--CCHHHHHhh-----CCEEEEecc
Confidence            4789999996 9999999999999999999998765 334454 56753    11  245555544     799998875


Q ss_pred             hh------hHHHHHHhcccCCEEEEEec
Q 042784          244 GK------MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       244 ~~------~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ..      .-...+..|+++..++.++.
T Consensus       225 lt~~t~~li~~~~l~~mk~gailIN~aR  252 (352)
T 3gg9_A          225 LNDETRSIITVADLTRMKPTALFVNTSR  252 (352)
T ss_dssp             CSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             CcHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence            31      22467788999999999884

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.30  E-value=0.012  Score=51.18  Aligned_cols=60  Identities=7%  Similarity=0.075  Sum_probs=44.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|||+||+|.+|...++.+...|.+|+++++.               ..|..+...+.+.+.+.   ++|+||.+.+.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------------~~D~~d~~~~~~~~~~~---~~d~vi~~a~~   66 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK---------------LLDITNISQVQQVVQEI---RPHIIIHCAAY   66 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT---------------TSCTTCHHHHHHHHHHH---CCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc---------------ccCCCCHHHHHHHHHhc---CCCEEEECCcc
Confidence            79999999999999999888889999999862               13333434454444432   58999998863

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.29  E-value=0.051  Score=48.06  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHH-HHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDA-ALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~-~i~~~~~~~~d~vld~~  242 (356)
                      .+|.|.|. |.+|...++.++..|.  +|++.++++++.+.++ ++|.......    +..+ .+     .++|+||-|+
T Consensus        34 ~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-~~G~~~~~~~----~~~~~~~-----~~aDvVilav  102 (314)
T 3ggo_A           34 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTT----SIAKVED-----FSPDFVMLSS  102 (314)
T ss_dssp             SEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEES----CTTGGGG-----GCCSEEEECS
T ss_pred             CEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HCCCcchhcC----CHHHHhh-----ccCCEEEEeC
Confidence            68999996 9999999999999998  9999999999999888 7786321111    1111 12     3489999999


Q ss_pred             chh----hHHHHHHhcccCCEEEEEec
Q 042784          243 GGK----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       243 g~~----~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ...    .+......++++..++.++.
T Consensus       103 p~~~~~~vl~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A          103 PVRTFREIAKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             CGGGHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             CHHHHHHHHHHHhhccCCCcEEEECCC
Confidence            865    34445556777777766654

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=96.29  E-value=0.017  Score=52.26  Aligned_cols=82  Identities=16%  Similarity=0.099  Sum_probs=51.8

Q ss_pred             CCCCCEEEEEcCCChHHHHH-HHHHHHCCCEEEEEeCChH----------------HHHHHHHHhCCCc-eee--cCChh
Q 042784          162 PKSGSNVFVSAAAGGVGMFA-GQLAKLKGCKVVGSTGSDD----------------NVKLLKEEFGYDD-AFN--YNSEM  221 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~-i~la~~~G~~V~~~~~s~~----------------~~~~~~~~~g~~~-v~~--~~~~~  221 (356)
                      ...++++||+|+++|+|+++ +.+|...|+.++++....+                -.+.++ +.|... .++  ..+..
T Consensus        47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~-~~G~~a~~i~~Dv~d~e  125 (401)
T 4ggo_A           47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAK-REGLYSVTIDGDAFSDE  125 (401)
T ss_dssp             SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHH-HHTCCEEEEESCTTSHH
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHH-HcCCCceeEeCCCCCHH
Confidence            35679999999999999984 5666677998887765322                123444 556542 232  22323


Q ss_pred             hHHHHHHHHC--CCCceEEEECCch
Q 042784          222 SFDAALTKYF--PNGIDVYLDNVGG  244 (356)
Q Consensus       222 ~~~~~i~~~~--~~~~d~vld~~g~  244 (356)
                      ...+.+.++.  .+++|+++.+++.
T Consensus       126 ~i~~vi~~i~~~~G~IDiLVhS~A~  150 (401)
T 4ggo_A          126 IKAQVIEEAKKKGIKFDLIVYSLAS  150 (401)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeccc
Confidence            3333333332  4679999998875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.29  E-value=0.017  Score=49.95  Aligned_cols=94  Identities=12%  Similarity=0.023  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+.+++|+|+ |++|.+++..+...|.+|++..++.++.+.+.++++...-++..   ++    .++..+.+|+++.|++
T Consensus       118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~---~~----~~~~~~~~DivIn~t~  189 (272)
T 1p77_A          118 PNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAV---SM----DSIPLQTYDLVINATS  189 (272)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEE---EG----GGCCCSCCSEEEECCC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEe---eH----HHhccCCCCEEEECCC
Confidence            5789999997 99999999888889999999999988877766566531001111   11    1111136999999998


Q ss_pred             hhhHHH----HHHhcccCCEEEEEec
Q 042784          244 GKMLEA----VLNHVNVHARIILCGM  265 (356)
Q Consensus       244 ~~~~~~----~~~~l~~~G~~v~~g~  265 (356)
                      ......    ....++++..++.+..
T Consensus       190 ~~~~~~~~~i~~~~l~~~~~v~D~~y  215 (272)
T 1p77_A          190 AGLSGGTASVDAEILKLGSAFYDMQY  215 (272)
T ss_dssp             C-------CCCHHHHHHCSCEEESCC
T ss_pred             CCCCCCCCCCCHHHcCCCCEEEEeeC
Confidence            653211    1234556666666655

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.28  E-value=0.091  Score=47.71  Aligned_cols=139  Identities=11%  Similarity=0.071  Sum_probs=81.1

Q ss_pred             CEEEEEcCCChHHHHHHHHHHH--------CCCEEEEEe-CChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCce
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKL--------KGCKVVGST-GSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~--------~G~~V~~~~-~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      =+|.|.|+ |.+|..-+...+.        -+++|++++ +++++.+.+.+++|...++     .++.+.+.+   ..+|
T Consensus        26 irvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y-----~d~~ell~~---~~iD   96 (393)
T 4fb5_A           26 LGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKAT-----ADWRALIAD---PEVD   96 (393)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEE-----SCHHHHHHC---TTCC
T ss_pred             ccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeec-----CCHHHHhcC---CCCc
Confidence            47999996 9999754433221        256887776 4556666666689987554     345554443   4699


Q ss_pred             EEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh-hccceEEEEEecccccchHHHHHHHHHHH
Q 042784          237 VYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM-IGKEVKMEGFMIGSHMDRFADFTVEMESY  314 (356)
Q Consensus       237 ~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (356)
                      +|+-|+... +.+.+..+|+.+-+ |++.-+...+     ......+... -.+++.+.-..    ..++...++.+.++
T Consensus        97 aV~IatP~~~H~~~a~~al~aGkh-Vl~EKPla~~-----~~ea~~l~~~a~~~g~~l~vg~----~~R~~p~~~~~k~~  166 (393)
T 4fb5_A           97 VVSVTTPNQFHAEMAIAALEAGKH-VWCEKPMAPA-----YADAERMLATAERSGKVAALGY----NYIQNPVMRHIRKL  166 (393)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCE-EEECSCSCSS-----HHHHHHHHHHHHHSSSCEEECC----GGGGCHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHhcCCe-EEEccCCccc-----HHHHHHhhhhHHhcCCcccccc----ccccChHHHHHHHH
Confidence            999999875 77888888887554 5676654411     0001111111 12233322111    12233557788888


Q ss_pred             HHcCCeeee
Q 042784          315 IKEGKIRSK  323 (356)
Q Consensus       315 ~~~g~i~~~  323 (356)
                      +++|.+-..
T Consensus       167 i~~G~iG~i  175 (393)
T 4fb5_A          167 VGDGVIGRV  175 (393)
T ss_dssp             HHTTTTCSE
T ss_pred             HHcCCCccc
Confidence            888877544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.28  E-value=0.11  Score=46.52  Aligned_cols=137  Identities=16%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEE-EeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVG-STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~-~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|.|.|. |.+|...+..++.. ++++++ .++++++.+.+.+.+|...++     .++.+.+.+   ..+|+|+.|+..
T Consensus         4 rvgiIG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~-----~~~~~ll~~---~~~D~V~i~tp~   74 (344)
T 3ezy_A            4 RIGVIGL-GRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAY-----KDPHELIED---PNVDAVLVCSST   74 (344)
T ss_dssp             EEEEECC-SHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEE-----SSHHHHHHC---TTCCEEEECSCG
T ss_pred             EEEEEcC-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCcee-----CCHHHHhcC---CCCCEEEEcCCC
Confidence            6899996 99998866666554 667775 456677777666588865343     334444432   469999999988


Q ss_pred             h-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEEEEEecccccchHHHHHHHHHHHHHcCCeee
Q 042784          245 K-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIRS  322 (356)
Q Consensus       245 ~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~  322 (356)
                      . +...+..+++.+.+ +++..+....     ......+.... .+++.+.-...    .++...++.+.+++.+|.|-.
T Consensus        75 ~~h~~~~~~al~~gk~-v~~EKP~~~~-----~~e~~~l~~~a~~~g~~~~v~~~----~R~~p~~~~~k~~i~~G~iG~  144 (344)
T 3ezy_A           75 NTHSELVIACAKAKKH-VFCEKPLSLN-----LADVDRMIEETKKADVILFTGFN----RRFDRNFKKLKEAVENGTIGK  144 (344)
T ss_dssp             GGHHHHHHHHHHTTCE-EEEESCSCSC-----HHHHHHHHHHHHHHTCCEEEECG----GGGCHHHHHHHHHHHTTTTSS
T ss_pred             cchHHHHHHHHhcCCe-EEEECCCCCC-----HHHHHHHHHHHHHhCCcEEEeec----ccCCHHHHHHHHHHHcCCCCC
Confidence            6 66667777777655 4465543211     00111111111 22333322211    123355778888999887643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.28  E-value=0.05  Score=47.14  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=62.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC-CceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN-GIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~-~~d~vld~~  242 (356)
                      .+|.|.|+ |.+|.+.++.++..|.  +|++.++++++.+.++ ++|..... ..   +..+.+     . ++|+|+.|+
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-~~g~~~~~-~~---~~~~~~-----~~~aDvVilav   70 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEG-TT---SIAKVE-----DFSPDFVMLSS   70 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEE-ES---CGGGGG-----GTCCSEEEECS
T ss_pred             cEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-HCCCcccc-cC---CHHHHh-----cCCCCEEEEcC
Confidence            37899996 9999999999988897  9999999999988887 77764211 11   111112     2 589999999


Q ss_pred             chhh----HHHHHHhcccCCEEEEEec
Q 042784          243 GGKM----LEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       243 g~~~----~~~~~~~l~~~G~~v~~g~  265 (356)
                      ....    +......++++..++.++.
T Consensus        71 p~~~~~~v~~~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           71 PVRTFREIAKKLSYILSEDATVTDQGS   97 (281)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             CHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence            8753    3334445677776666554

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.27  E-value=0.0049  Score=54.26  Aligned_cols=74  Identities=12%  Similarity=0.039  Sum_probs=50.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +.+|||+||+|.+|...++.+...  |.+|++++++..+.+...   +.. ...|..+...+.+.+.+   .++|+||.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~---~~~~~~~D~~d~~~~~~~~~~---~~~d~vih~   75 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN---SGPFEVVNALDFNQIEHLVEV---HKITDIYLM   75 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHH---SSCEEECCTTCHHHHHHHHHH---TTCCEEEEC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccC---CCceEEecCCCHHHHHHHHhh---cCCCEEEEC
Confidence            357999999999999988877776  789999988765533222   232 12344443444444443   269999999


Q ss_pred             Cch
Q 042784          242 VGG  244 (356)
Q Consensus       242 ~g~  244 (356)
                      ++.
T Consensus        76 a~~   78 (312)
T 2yy7_A           76 AAL   78 (312)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            874

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.26  E-value=0.0013  Score=56.89  Aligned_cols=71  Identities=14%  Similarity=0.020  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +++|||+||+|++|..+++.+...|++|+++++++.+..    ..+.. ...|..+..++.+.+     .++|+||.+.|
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~-----~~~D~vi~~Ag   73 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----GPNEECVQCDLADANAVNAMV-----AGCDGIVHLGG   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----CTTEEEEECCTTCHHHHHHHH-----TTCSEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----CCCCEEEEcCCCCHHHHHHHH-----cCCCEEEECCC
Confidence            468999999999999999888888999999998765433    11111 112444423333333     25999999987


Q ss_pred             h
Q 042784          244 G  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus        74 ~   74 (267)
T 3rft_A           74 I   74 (267)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.24  E-value=0.12  Score=46.38  Aligned_cols=137  Identities=14%  Similarity=0.094  Sum_probs=80.1

Q ss_pred             CEEEEEcCCChHHH-HHHHHHHHC-CCEEEEE-eCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGM-FAGQLAKLK-GCKVVGS-TGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~-~~i~la~~~-G~~V~~~-~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -+|.|.|. |.+|. ..+..++.. +++++++ ++++++.+.+.+++|...+      .++.+.+.   ...+|+|+.|+
T Consensus        28 ~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~------~~~~~ll~---~~~~D~V~i~t   97 (350)
T 3rc1_A           28 IRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPV------EGYPALLE---RDDVDAVYVPL   97 (350)
T ss_dssp             EEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEE------ESHHHHHT---CTTCSEEEECC
T ss_pred             eEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCc------CCHHHHhc---CCCCCEEEECC
Confidence            47999996 99997 555555555 7787644 5677777766658887532      23433332   24699999999


Q ss_pred             chh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh-hccceEEEEEecccccchHHHHHHHHHHHHHcCCe
Q 042784          243 GGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM-IGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       243 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i  320 (356)
                      ... ....+..+++.+.+ |++..+....     ......+... -.+++.+.-....    ++...++.+.+++.+|.+
T Consensus        98 p~~~h~~~~~~al~aGk~-Vl~EKP~a~~-----~~ea~~l~~~a~~~g~~~~v~~~~----R~~p~~~~~k~~i~~G~i  167 (350)
T 3rc1_A           98 PAVLHAEWIDRALRAGKH-VLAEKPLTTD-----RPQAERLFAVARERGLLLMENFMF----LHHPQHRQVADMLDEGVI  167 (350)
T ss_dssp             CGGGHHHHHHHHHHTTCE-EEEESSSCSS-----HHHHHHHHHHHHHTTCCEEEECGG----GGCTHHHHHHHHHHTTTT
T ss_pred             CcHHHHHHHHHHHHCCCc-EEEeCCCCCC-----HHHHHHHHHHHHHhCCEEEEEecc----cCCHHHHHHHHHHhcCCC
Confidence            876 67777778877655 5565543311     0011111111 1233333221111    223456777888888876


Q ss_pred             ee
Q 042784          321 RS  322 (356)
Q Consensus       321 ~~  322 (356)
                      -.
T Consensus       168 G~  169 (350)
T 3rc1_A          168 GE  169 (350)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.23  E-value=0.0058  Score=55.65  Aligned_cols=74  Identities=12%  Similarity=0.091  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++..+..... ..+... ..|..+..++.+.+     .++|+||.++
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~-----~~~d~Vih~A  101 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED-MFCDEFHLVDLRVMENCLKVT-----EGVDHVFNLA  101 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG-GTCSEEEECCTTSHHHHHHHH-----TTCSEEEECC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc-cCCceEEECCCCCHHHHHHHh-----CCCCEEEECc
Confidence            3568999999999999999988888999999998765432221 112221 12444323333333     3699999998


Q ss_pred             c
Q 042784          243 G  243 (356)
Q Consensus       243 g  243 (356)
                      +
T Consensus       102 ~  102 (379)
T 2c5a_A          102 A  102 (379)
T ss_dssp             C
T ss_pred             e
Confidence            7

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.23  E-value=0.012  Score=52.53  Aligned_cols=88  Identities=14%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++..|.+|++.+++.++ +.+. ++|+.    +.   ++.+.+.     ..|+|+.++.
T Consensus       164 ~g~tvgIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~----~~---~l~ell~-----~aDvV~l~~P  228 (335)
T 2g76_A          164 NGKTLGILGL-GRIGREVATRMQSFGMKTIGYDPIISP-EVSA-SFGVQ----QL---PLEEIWP-----LCDFITVHTP  228 (335)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSCH-HHHH-HTTCE----EC---CHHHHGG-----GCSEEEECCC
T ss_pred             CcCEEEEEeE-CHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-hcCce----eC---CHHHHHh-----cCCEEEEecC
Confidence            5789999996 999999999999999999999987665 3455 67763    11   2333332     3899999876


Q ss_pred             hh-----hH-HHHHHhcccCCEEEEEecc
Q 042784          244 GK-----ML-EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~~-----~~-~~~~~~l~~~G~~v~~g~~  266 (356)
                      ..     .+ ...+..+++++.++.++..
T Consensus       229 ~t~~t~~li~~~~l~~mk~gailIN~arg  257 (335)
T 2g76_A          229 LLPSTTGLLNDNTFAQCKKGVRVVNCARG  257 (335)
T ss_dssp             CCTTTTTSBCHHHHTTSCTTEEEEECSCT
T ss_pred             CCHHHHHhhCHHHHhhCCCCcEEEECCCc
Confidence            42     22 4677889999999888763

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.23  E-value=0.016  Score=51.36  Aligned_cols=89  Identities=17%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -.|.+|.|.|. |.+|...++.++..|++|++.+++.++. .++ ++|+..    .   ++.+.+.+     .|+|+.++
T Consensus       140 l~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~g~~~----~---~l~ell~~-----aDvVvl~~  204 (313)
T 2ekl_A          140 LAGKTIGIVGF-GRIGTKVGIIANAMGMKVLAYDILDIRE-KAE-KINAKA----V---SLEELLKN-----SDVISLHV  204 (313)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSCCHH-HHH-HTTCEE----C---CHHHHHHH-----CSEEEECC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCCcchh-HHH-hcCcee----c---CHHHHHhh-----CCEEEEec
Confidence            35789999996 9999999999999999999999887664 344 677641    1   23333433     79999988


Q ss_pred             chh-----hH-HHHHHhcccCCEEEEEecc
Q 042784          243 GGK-----ML-EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       243 g~~-----~~-~~~~~~l~~~G~~v~~g~~  266 (356)
                      ...     .+ ...+..+++++.++.++..
T Consensus       205 P~~~~t~~li~~~~l~~mk~ga~lIn~arg  234 (313)
T 2ekl_A          205 TVSKDAKPIIDYPQFELMKDNVIIVNTSRA  234 (313)
T ss_dssp             CCCTTSCCSBCHHHHHHSCTTEEEEESSCG
T ss_pred             cCChHHHHhhCHHHHhcCCCCCEEEECCCC
Confidence            642     22 4567889999888887663

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.22  E-value=0.0046  Score=53.28  Aligned_cols=97  Identities=10%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHC---CCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHCCCCc
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLK---GCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~---G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      +++|.+||=.|+  |.|..+..+++..   |++|++++.|++-.+.+++.+   +...-+.... .+    +.++.-+.+
T Consensus        68 ~~~~~~vLDlGc--GtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~-~D----~~~~~~~~~  140 (261)
T 4gek_A           68 VQPGTQVYDLGC--SLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE-GD----IRDIAIENA  140 (261)
T ss_dssp             CCTTCEEEEETC--TTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE-SC----TTTCCCCSE
T ss_pred             CCCCCEEEEEeC--CCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEee-cc----ccccccccc
Confidence            689999999994  4677788888864   679999999999888887543   3322222111 11    222333468


Q ss_pred             eEEEECCch---------hhHHHHHHhcccCCEEEEEec
Q 042784          236 DVYLDNVGG---------KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       236 d~vld~~g~---------~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      |+|+.+..-         ..+..+.+.|+|+|.++....
T Consensus       141 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          141 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence            988864321         257888999999999987643

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.22  E-value=0.022  Score=50.29  Aligned_cols=90  Identities=12%  Similarity=0.066  Sum_probs=59.5

Q ss_pred             CEEEEEcCCChHHHHHHHHH-H-HCCCEEEEEe-CChHH--HHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLA-K-LKGCKVVGST-GSDDN--VKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la-~-~~G~~V~~~~-~s~~~--~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      -+|.|.|. |.+|...+..+ + ..++++++++ +++++  .+.++ ++|... . +   .++.+.+....+.++|+|++
T Consensus         5 irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~-~~g~~~-~-~---~~~e~ll~~~~~~~iDvV~~   77 (312)
T 1nvm_B            5 LKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ-RMGVTT-T-Y---AGVEGLIKLPEFADIDFVFD   77 (312)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH-HTTCCE-E-S---SHHHHHHHSGGGGGEEEEEE
T ss_pred             CEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHH-HcCCCc-c-c---CCHHHHHhccCCCCCcEEEE
Confidence            47999995 99999888777 4 3467666554 44454  44555 788652 1 1   23333333221246999999


Q ss_pred             CCchh-hHHHHHHhccc--CCEEEE
Q 042784          241 NVGGK-MLEAVLNHVNV--HARIIL  262 (356)
Q Consensus       241 ~~g~~-~~~~~~~~l~~--~G~~v~  262 (356)
                      |++.. +.+.+..+++.  +.+++.
T Consensus        78 atp~~~h~~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           78 ATSASAHVQNEALLRQAKPGIRLID  102 (312)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CCChHHHHHHHHHHHHhCCCCEEEE
Confidence            99975 67778888888  888775

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=96.21  E-value=0.014  Score=52.83  Aligned_cols=75  Identities=11%  Similarity=0.133  Sum_probs=45.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH--HHHHHHh-------CCC-ce--eecCChhhHHHHHHHHCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV--KLLKEEF-------GYD-DA--FNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~--~~~~~~~-------g~~-~v--~~~~~~~~~~~~i~~~~~  232 (356)
                      +.+|||+||+|.+|..+++.+...|.+|++++++.++.  +.+. .+       +.. ..  .|..+..++.+.+...  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--   77 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVD-HIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV--   77 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHH--
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHH-HHhhccccCCCceEEEECCCCCHHHHHHHHHhc--
Confidence            35899999999999999988888899999999776532  2222 11       111 11  2444434444444432  


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                       ++|+||.+.|
T Consensus        78 -~~d~vih~A~   87 (372)
T 1db3_A           78 -QPDEVYNLGA   87 (372)
T ss_dssp             -CCSEEEECCC
T ss_pred             -CCCEEEECCc
Confidence             5899999876

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.21  E-value=0.011  Score=52.20  Aligned_cols=73  Identities=18%  Similarity=0.202  Sum_probs=46.8

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHH---HHHHHHHhCC--C--ce--eecCChhhHHHHHHHHCCCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDN---VKLLKEEFGY--D--DA--FNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~---~~~~~~~~g~--~--~v--~~~~~~~~~~~~i~~~~~~~  234 (356)
                      |.+|||+||+|.+|..+++.+...|.+|+++++ ++++   ...+. .+..  .  .+  .|..+...+.+.+     .+
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~   74 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLT-NLPGASEKLHFFNADLSNPDSFAAAI-----EG   74 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHH-TSTTHHHHEEECCCCTTCGGGGHHHH-----TT
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHH-hhhccCCceEEEecCCCCHHHHHHHH-----cC
Confidence            578999999999999999988889999998887 5432   12222 2210  0  11  2444434444444     25


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+||.+++
T Consensus        75 ~d~vih~A~   83 (322)
T 2p4h_X           75 CVGIFHTAS   83 (322)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEcCC
Confidence            899999875

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=96.21  E-value=0.024  Score=49.48  Aligned_cols=62  Identities=11%  Similarity=0.136  Sum_probs=44.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|||+||+|.+|...++.+. .|.+|+++++++.           ....|..+...+.+.+...   ++|+||.+++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-----------~~~~D~~d~~~~~~~~~~~---~~d~vih~a~   63 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-----------EFCGDFSNPKGVAETVRKL---RPDVIVNAAA   63 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-----------SSCCCTTCHHHHHHHHHHH---CCSEEEECCC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-----------cccccCCCHHHHHHHHHhc---CCCEEEECcc
Confidence            69999999999999988887 7999999987641           1123444434444444432   5899999986

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.20  E-value=0.017  Score=49.84  Aligned_cols=86  Identities=16%  Similarity=0.163  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +.+++|.|+ |++|.+++..+...|.+|++..++.++.+.+. ++|.. ...+.+   +         ..+|+||+|++.
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~-~~~~~~---l---------~~~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCD-CFMEPP---K---------SAFDLIINATSA  182 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCE-EESSCC---S---------SCCSEEEECCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCe-EecHHH---h---------ccCCEEEEcccC
Confidence            899999997 99999999999999999999999999988887 78843 333322   1         158999999864


Q ss_pred             h-----hH--HHHHHhcccCCEEEEEec
Q 042784          245 K-----ML--EAVLNHVNVHARIILCGM  265 (356)
Q Consensus       245 ~-----~~--~~~~~~l~~~G~~v~~g~  265 (356)
                      .     .+  ......++++..++.+..
T Consensus       183 Gm~~~~~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          183 SLHNELPLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             CCCCSCSSCHHHHHHHHHHCSEEEESCC
T ss_pred             CCCCCCCCChHHHHhhCCCCCEEEEeCC
Confidence            2     12  222235677777776654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.19  E-value=0.018  Score=49.31  Aligned_cols=98  Identities=17%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-------------------ceeecCChhh
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-------------------DAFNYNSEMS  222 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-------------------~v~~~~~~~~  222 (356)
                      ..++.+||..|.  |.|..+..|++. |++|++++.|+.-.+.+++..+..                   .-+.+.. .+
T Consensus        66 ~~~~~~vLD~GC--G~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~D  141 (252)
T 2gb4_A           66 GQSGLRVFFPLC--GKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYC-CS  141 (252)
T ss_dssp             TCCSCEEEETTC--TTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE-SC
T ss_pred             CCCCCeEEEeCC--CCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEE-Cc
Confidence            467899999985  357777777765 999999999999999887555320                   0111110 11


Q ss_pred             HHHHHHHHCCCCceEEEECCc-----h----hhHHHHHHhcccCCEEEEEe
Q 042784          223 FDAALTKYFPNGIDVYLDNVG-----G----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g-----~----~~~~~~~~~l~~~G~~v~~g  264 (356)
                      +.+ +.....+.||+|++...     .    ..+..+.+.|+|+|+++++.
T Consensus       142 ~~~-l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          142 IFD-LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             TTT-GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccc-CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            111 11101157999998532     1    15777889999999986543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.19  E-value=0.014  Score=48.86  Aligned_cols=95  Identities=12%  Similarity=0.149  Sum_probs=65.0

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCC-------CEEEEEeCChHHHHHHHHHh---C-----CC--ceeecCChhhH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKG-------CKVVGSTGSDDNVKLLKEEF---G-----YD--DAFNYNSEMSF  223 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G-------~~V~~~~~s~~~~~~~~~~~---g-----~~--~v~~~~~~~~~  223 (356)
                      .++++++||-.|+ |. |..+..+++..+       .+|++++.+++..+.+++.+   +     ..  .++..    +.
T Consensus        81 ~~~~~~~VLdiG~-G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~----d~  154 (227)
T 1r18_A           81 HLKPGARILDVGS-GS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG----DG  154 (227)
T ss_dssp             TCCTTCEEEEESC-TT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES----CG
T ss_pred             hCCCCCEEEEECC-Cc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC----Cc
Confidence            5789999999995 54 888888888776       49999999998887776422   1     11  11211    11


Q ss_pred             HHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          224 DAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      .+.+..  .+.||+|+.+.... ....+.+.|+++|+++..
T Consensus       155 ~~~~~~--~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          155 RKGYPP--NAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  193 (227)
T ss_dssp             GGCCGG--GCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ccCCCc--CCCccEEEECCchHHHHHHHHHHhcCCCEEEEE
Confidence            111111  24699999876654 557888999999998864

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.19  E-value=0.058  Score=49.08  Aligned_cols=138  Identities=14%  Similarity=0.178  Sum_probs=80.2

Q ss_pred             EEEEEcCCChHHHH-HH----H-HHHHCCCEE----------EEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHH
Q 042784          167 NVFVSAAAGGVGMF-AG----Q-LAKLKGCKV----------VGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       167 ~VlV~g~~g~vG~~-~i----~-la~~~G~~V----------~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      +|.|.|+.|.+|.. .+    . +.+.-+..+          .+.++++++.+.+.+++|...++     .++.+.+.+ 
T Consensus         8 rigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~-----~~~~~ll~~-   81 (383)
T 3oqb_A            8 GLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWT-----TDLDAALAD-   81 (383)
T ss_dssp             EEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEE-----SCHHHHHHC-
T ss_pred             EEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCccc-----CCHHHHhcC-
Confidence            68999966999986 33    3 333333332          36667777777776688876444     345444443 


Q ss_pred             CCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh-hccceEEEEEecccccchHHHHH
Q 042784          231 FPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM-IGKEVKMEGFMIGSHMDRFADFT  308 (356)
Q Consensus       231 ~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l  308 (356)
                        ..+|+|+.|+... +.+.+..+|+.+-++ ++..+....     ......+... -.+++.+.-..    ..++...+
T Consensus        82 --~~iD~V~i~tp~~~h~~~~~~al~~Gk~V-~~EKP~a~~-----~~~~~~l~~~a~~~~~~~~v~~----~~r~~p~~  149 (383)
T 3oqb_A           82 --KNDTMFFDAATTQARPGLLTQAINAGKHV-YCEKPIATN-----FEEALEVVKLANSKGVKHGTVQ----DKLFLPGL  149 (383)
T ss_dssp             --SSCCEEEECSCSSSSHHHHHHHHTTTCEE-EECSCSCSS-----HHHHHHHHHHHHHTTCCEEECC----GGGGSHHH
T ss_pred             --CCCCEEEECCCchHHHHHHHHHHHCCCeE-EEcCCCCCC-----HHHHHHHHHHHHHcCCeEEEEe----ccccCHHH
Confidence              4699999999875 777888888887664 465543311     0011111111 12233221111    12233567


Q ss_pred             HHHHHHHHcCCeee
Q 042784          309 VEMESYIKEGKIRS  322 (356)
Q Consensus       309 ~~~~~~~~~g~i~~  322 (356)
                      +.+.+++.+|.|-.
T Consensus       150 ~~~~~~i~~g~iG~  163 (383)
T 3oqb_A          150 KKIAFLRDSGFFGR  163 (383)
T ss_dssp             HHHHHHHHTTTTSS
T ss_pred             HHHHHHHHcCCCCC
Confidence            78888899887643

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.19  E-value=0.0049  Score=55.51  Aligned_cols=77  Identities=14%  Similarity=0.100  Sum_probs=46.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhC-CCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFG-YDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g-~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +.+|||+||+|.+|..+++.+...| .+|+++++++.... .. .+. .....|..+...+.+.+.....+++|+||.++
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A  123 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FV-NLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEG  123 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-GG-GTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-hh-cccCceEeeecCcHHHHHHHHhhcccCCCCEEEECC
Confidence            5689999999999999999888889 79999987654421 11 221 11123333212222222110113699999998


Q ss_pred             c
Q 042784          243 G  243 (356)
Q Consensus       243 g  243 (356)
                      +
T Consensus       124 ~  124 (357)
T 2x6t_A          124 A  124 (357)
T ss_dssp             S
T ss_pred             c
Confidence            7

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.16  E-value=0.054  Score=46.82  Aligned_cols=86  Identities=13%  Similarity=0.088  Sum_probs=60.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKM  246 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~  246 (356)
                      +|.|.|+ |.+|.+.+..+...|.+|++.++++++.+.+. +.|..... ..+       +.+.  .++|+||-|+....
T Consensus         2 ~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~~~-~~~-------~~~~--~~~D~vi~av~~~~   69 (279)
T 2f1k_A            2 KIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQLVDEA-GQD-------LSLL--QTAKIIFLCTPIQL   69 (279)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTSCSEE-ESC-------GGGG--TTCSEEEECSCHHH
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCCCccc-cCC-------HHHh--CCCCEEEEECCHHH
Confidence            6889996 99999998888888999999999999888887 77764211 111       1122  35899999998764


Q ss_pred             HHHHH----HhcccCCEEEEEe
Q 042784          247 LEAVL----NHVNVHARIILCG  264 (356)
Q Consensus       247 ~~~~~----~~l~~~G~~v~~g  264 (356)
                      ....+    ..++++..++.++
T Consensus        70 ~~~~~~~l~~~~~~~~~vv~~~   91 (279)
T 2f1k_A           70 ILPTLEKLIPHLSPTAIVTDVA   91 (279)
T ss_dssp             HHHHHHHHGGGSCTTCEEEECC
T ss_pred             HHHHHHHHHhhCCCCCEEEECC
Confidence            44333    3455566666553

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.16  E-value=0.0074  Score=54.62  Aligned_cols=90  Identities=11%  Similarity=0.038  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .|.+|.|.|. |.+|...++.++.+|++ |++.+++..+.+.+. ++|+..   .   .++.+.+.     ..|+|+.++
T Consensus       163 ~g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-~~g~~~---~---~~l~ell~-----~aDvV~l~~  229 (364)
T 2j6i_A          163 EGKTIATIGA-GRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-KVGARR---V---ENIEELVA-----QADIVTVNA  229 (364)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-HTTEEE---C---SSHHHHHH-----TCSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-hcCcEe---c---CCHHHHHh-----cCCEEEECC
Confidence            5889999996 99999999999999996 999998776666665 667531   1   23444343     378999887


Q ss_pred             chh-----hH-HHHHHhcccCCEEEEEecc
Q 042784          243 GGK-----ML-EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       243 g~~-----~~-~~~~~~l~~~G~~v~~g~~  266 (356)
                      ...     .+ ...+..|++++.++.++..
T Consensus       230 P~t~~t~~li~~~~l~~mk~ga~lIn~arG  259 (364)
T 2j6i_A          230 PLHAGTKGLINKELLSKFKKGAWLVNTARG  259 (364)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTEEEEECSCG
T ss_pred             CCChHHHHHhCHHHHhhCCCCCEEEECCCC
Confidence            642     22 4567788888888887753

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.16  E-value=0.094  Score=47.23  Aligned_cols=136  Identities=13%  Similarity=0.218  Sum_probs=80.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC-CCEEEEE-eCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK-GCKVVGS-TGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~-~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      -+|.|.|. |.+|...+..++.. +++++++ ++++++.+.++ ++|.. +  |   .++.+.+.+   ..+|+|+.|+.
T Consensus         6 ~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-~~g~~-~--~---~~~~~ll~~---~~~D~V~i~tp   74 (359)
T 3e18_A            6 YQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-QKGLK-I--Y---ESYEAVLAD---EKVDAVLIATP   74 (359)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-TTTCC-B--C---SCHHHHHHC---TTCCEEEECSC
T ss_pred             CcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-hcCCc-e--e---CCHHHHhcC---CCCCEEEEcCC
Confidence            47999996 99998877777666 6788765 55666766665 77764 2  2   344444432   46999999998


Q ss_pred             hh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEEEEEecccccchHHHHHHHHHHHHHcCCee
Q 042784          244 GK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       244 ~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      .. ..+.+..+++.+.+ |++..+....     ......+.... .+++.+.-...    .++...++.+.+++++|.|-
T Consensus        75 ~~~h~~~~~~al~aGkh-Vl~EKP~a~~-----~~ea~~l~~~a~~~g~~~~v~~~----~r~~p~~~~~k~~i~~g~iG  144 (359)
T 3e18_A           75 NDSHKELAISALEAGKH-VVCEKPVTMT-----SEDLLAIMDVAKRVNKHFMVHQN----RRWDEDFLIIKEMFEQKTIG  144 (359)
T ss_dssp             GGGHHHHHHHHHHTTCE-EEEESSCCSS-----HHHHHHHHHHHHHHTCCEEEECG----GGGCHHHHHHHHHHHHTTTS
T ss_pred             cHHHHHHHHHHHHCCCC-EEeeCCCcCC-----HHHHHHHHHHHHHhCCeEEEEee----eccCHHHHHHHHHHHcCCCC
Confidence            75 67778888887655 4465443211     00111111111 22333321111    12335567788888888764


Q ss_pred             e
Q 042784          322 S  322 (356)
Q Consensus       322 ~  322 (356)
                      .
T Consensus       145 ~  145 (359)
T 3e18_A          145 E  145 (359)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.16  E-value=0.022  Score=50.90  Aligned_cols=87  Identities=15%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++..|.+|++.+++.++ +.+. ++|..    +.   ++.+.+.+     .|+|+.++.
T Consensus       149 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~----~~---~l~~~l~~-----aDvVil~vp  213 (334)
T 2dbq_A          149 YGKTIGIIGL-GRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-ELNAE----FK---PLEDLLRE-----SDFVVLAVP  213 (334)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-HHCCE----EC---CHHHHHHH-----CSEEEECCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-hcCcc----cC---CHHHHHhh-----CCEEEECCC
Confidence            5789999996 999999999999999999999988777 5555 66652    11   24444443     799999886


Q ss_pred             hh-----hH-HHHHHhcccCCEEEEEec
Q 042784          244 GK-----ML-EAVLNHVNVHARIILCGM  265 (356)
Q Consensus       244 ~~-----~~-~~~~~~l~~~G~~v~~g~  265 (356)
                      ..     .+ ...+..++++..++.++.
T Consensus       214 ~~~~t~~~i~~~~~~~mk~~ailIn~sr  241 (334)
T 2dbq_A          214 LTRETYHLINEERLKLMKKTAILINIAR  241 (334)
T ss_dssp             CCTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             CChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence            42     22 356778899888887764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.15  E-value=0.026  Score=47.55  Aligned_cols=94  Identities=14%  Similarity=0.104  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .++++.+||=.|+  |.|..+..+++. |++|++++.+++..+.++ +.  ..++.    .+..+.+..+..+.||+|+.
T Consensus        38 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~-~~--~~~~~----~d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           38 YFKGCRRVLDIGC--GRGEFLELCKEE-GIESIGVDINEDMIKFCE-GK--FNVVK----SDAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             GTTTCSCEEEETC--TTTHHHHHHHHH-TCCEEEECSCHHHHHHHH-TT--SEEEC----SCHHHHHHTSCTTCBSEEEE
T ss_pred             hhcCCCeEEEEeC--CCCHHHHHHHhC-CCcEEEEECCHHHHHHHH-hh--cceee----ccHHHHhhhcCCCCeeEEEE
Confidence            3578899999984  456666777766 889999999999999888 43  22221    23333333334467999986


Q ss_pred             CC-----ch----hhHHHHHHhcccCCEEEEEe
Q 042784          241 NV-----GG----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       241 ~~-----g~----~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ..     ..    ..+..+.+.|+|+|.++...
T Consensus       108 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A          108 SHFVEHLDPERLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             CCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            43     21    36788889999999988643

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.14  E-value=0.046  Score=46.36  Aligned_cols=77  Identities=18%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|+|.|++|.+|...++.+... +.+++++....+..+.+. ..+++-++|+..+....+.+......+.++|+.++|.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~-~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~   79 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLT-DGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGF   79 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHH-HTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHh-ccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCC
Confidence            6899999999999999988766 888886664444444443 3367888888875555555554444578999998885

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.14  E-value=0.04  Score=49.05  Aligned_cols=75  Identities=13%  Similarity=0.159  Sum_probs=49.1

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh--HH---HHHHHHHhCCCce--eecCChhhHHHHHHHHCCCCceEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD--DN---VKLLKEEFGYDDA--FNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~--~~---~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      .+|||+||+|.+|..+++.+...|.+|+++++..  ..   .+.+. ..+...+  .|..+..++.+.+..   ..+|+|
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~-~~~~~~~~~~Dl~d~~~~~~~~~~---~~~d~v   77 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-SLGNFEFVHGDIRNKNDVTRLITK---YMPDSC   77 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHH---HCCSEE
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhc-cCCceEEEEcCCCCHHHHHHHHhc---cCCCEE
Confidence            3799999999999999998888999999998632  11   22222 2231222  244443444444443   258999


Q ss_pred             EECCch
Q 042784          239 LDNVGG  244 (356)
Q Consensus       239 ld~~g~  244 (356)
                      |.+++.
T Consensus        78 ih~A~~   83 (347)
T 1orr_A           78 FHLAGQ   83 (347)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999873

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.14  E-value=0.015  Score=50.72  Aligned_cols=99  Identities=21%  Similarity=0.204  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCC------CceeecCChhhHHHHHHHHCCCC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGY------DDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~------~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ..++.+||+.|  +|.|..+..+++..+ .+|++++.+++-.+.+++.+..      +.-+.... .+..+.+... .+.
T Consensus        76 ~~~~~~VLdiG--~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~-~D~~~~l~~~-~~~  151 (283)
T 2i7c_A           76 SKEPKNVLVVG--GGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI-EDASKFLENV-TNT  151 (283)
T ss_dssp             SSSCCEEEEEE--CTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE-SCHHHHHHHC-CSC
T ss_pred             CCCCCeEEEEe--CCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE-CChHHHHHhC-CCC
Confidence            35678999999  456777778887764 5999999999999998855532      11111111 3343334332 457


Q ss_pred             ceEEEE-CC---c-------hhhHHHHHHhcccCCEEEEEe
Q 042784          235 IDVYLD-NV---G-------GKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       235 ~d~vld-~~---g-------~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      +|+|+- ..   +       .+.+..+.+.|+++|.++...
T Consensus       152 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          152 YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            999985 21   1       246778889999999998653

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.13  E-value=0.016  Score=49.84  Aligned_cols=105  Identities=16%  Similarity=0.208  Sum_probs=69.2

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCC
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      +.....+.++.+||-.|+  |.|..+..+++..|.+|++++.+++..+.+++.   .|...-+.... .++.+ + ....
T Consensus        53 l~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~-~-~~~~  127 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGC--GIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSY-ADAMD-L-PFED  127 (273)
T ss_dssp             HHHHSCCCTTCEEEEESC--TTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-CCTTS-C-CSCT
T ss_pred             HHHhcCCCCCCEEEEeCC--CCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE-Ccccc-C-CCCC
Confidence            444567889999999994  458888899988899999999999888777643   23221111100 11110 0 0113


Q ss_pred             CCceEEEECCc-----h--hhHHHHHHhcccCCEEEEEec
Q 042784          233 NGIDVYLDNVG-----G--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 ~~~d~vld~~g-----~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +.||+|+....     .  ..+..+.+.|+|+|+++....
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          128 ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            46999985322     2  367888899999999886653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.13  E-value=0.021  Score=47.58  Aligned_cols=99  Identities=14%  Similarity=0.113  Sum_probs=63.8

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCC---
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFP---  232 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~---  232 (356)
                      ...++.+||=.|  .+.|..++.+++..  +.+|++++.+++..+.+++   ..|....+.... .+..+.+..+..   
T Consensus        55 ~~~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~  131 (221)
T 3u81_A           55 REYSPSLVLELG--AYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILN-GASQDLIPQLKKKYD  131 (221)
T ss_dssp             HHHCCSEEEEEC--CTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE-SCHHHHGGGTTTTSC
T ss_pred             HhcCCCEEEEEC--CCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEE-CCHHHHHHHHHHhcC
Confidence            345678999998  45678888888865  6799999999998887774   345432222211 344444444332   


Q ss_pred             -CCceEEEECCchh-------hHHHHHHhcccCCEEEEE
Q 042784          233 -NGIDVYLDNVGGK-------MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       233 -~~~d~vld~~g~~-------~~~~~~~~l~~~G~~v~~  263 (356)
                       +.||+|+-.....       .+..+ +.|+|+|.++.-
T Consensus       132 ~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~  169 (221)
T 3u81_A          132 VDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLAD  169 (221)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred             CCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEe
Confidence             4799998654332       12223 789999998753

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.11  E-value=0.0084  Score=53.48  Aligned_cols=89  Identities=11%  Similarity=0.049  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...++.++..|++|++.+++..+.+... .+|..    +   .++.+.+.+     .|+|+-++.
T Consensus       144 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~----~---~~l~ell~~-----aDvV~l~~P  209 (330)
T 4e5n_A          144 DNATVGFLGM-GAIGLAMADRLQGWGATLQYHEAKALDTQTEQ-RLGLR----Q---VACSELFAS-----SDFILLALP  209 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHTTTSCCEEEEECSSCCCHHHHH-HHTEE----E---CCHHHHHHH-----CSEEEECCC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCCCCcHhHHH-hcCce----e---CCHHHHHhh-----CCEEEEcCC
Confidence            4789999996 99999999999999999999998775555555 56652    1   124444433     788888776


Q ss_pred             hh-----h-HHHHHHhcccCCEEEEEecc
Q 042784          244 GK-----M-LEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~~-----~-~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ..     . -...+..|+++..++.++..
T Consensus       210 ~t~~t~~li~~~~l~~mk~gailIN~arg  238 (330)
T 4e5n_A          210 LNADTLHLVNAELLALVRPGALLVNPCRG  238 (330)
T ss_dssp             CSTTTTTCBCHHHHTTSCTTEEEEECSCG
T ss_pred             CCHHHHHHhCHHHHhhCCCCcEEEECCCC
Confidence            31     2 24677788888888887753

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.11  E-value=0.023  Score=55.14  Aligned_cols=78  Identities=19%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC--hHHHHHHHHHhCCCceeecCCh----hhHHHHHHHHCCCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS--DDNVKLLKEEFGYDDAFNYNSE----MSFDAALTKYFPNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s--~~~~~~~~~~~g~~~v~~~~~~----~~~~~~i~~~~~~~~d~  237 (356)
                      .|++++|+||++|+|.+.++.+...|++|++.++.  ++-.+.++ +.|........+.    ..+.+.+.+.. +++|+
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~-~~g~~~~~~~~Dv~~~~~~~~~~~~~~~-G~iDi  398 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIK-AAGGEAWPDQHDVAKDSEAIIKNVIDKY-GTIDI  398 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHH-HTTCEEEEECCCHHHHHHHHHHHHHHHH-SCCCE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHH-hcCCeEEEEEcChHHHHHHHHHHHHHhc-CCCCE
Confidence            46889999999999999999999999999988742  22233444 4454323322222    12222232222 46999


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ++++.|
T Consensus       399 LVnNAG  404 (604)
T 2et6_A          399 LVNNAG  404 (604)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999987

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=96.11  E-value=0.023  Score=48.72  Aligned_cols=66  Identities=15%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|||+||+|.+|...++.+. .|.+|++++++++..   .   +  ...|..+..++.+.+.+.   ++|+||.++|.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~---~---~--~~~Dl~~~~~~~~~~~~~---~~d~vi~~a~~   67 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ---G---G--YKLDLTDFPRLEDFIIKK---RPDVIINAAAM   67 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT---T---C--EECCTTSHHHHHHHHHHH---CCSEEEECCCC
T ss_pred             EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC---C---C--ceeccCCHHHHHHHHHhc---CCCEEEECCcc
Confidence            58999999999999888777 489999999775321   1   2  334555534454444432   58999999873

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=96.11  E-value=0.011  Score=49.36  Aligned_cols=75  Identities=13%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC----------------CChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHH
Q 042784          164 SGSNVFVSAA----------------AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAAL  227 (356)
Q Consensus       164 ~g~~VlV~g~----------------~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i  227 (356)
                      .|.+|||+||                +|++|.+.++.+...|++|+.+.+.. ..+.   ..|. .+++..+..++.+.+
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~-~l~~---~~g~-~~~dv~~~~~~~~~v   81 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPV-SLPT---PPFV-KRVDVMTALEMEAAV   81 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSC-CCCC---CTTE-EEEECCSHHHHHHHH
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCc-cccc---CCCC-eEEccCcHHHHHHHH
Confidence            4889999999                68999999999999999999887543 1110   1122 356665545555555


Q ss_pred             HHHCCCCceEEEECCch
Q 042784          228 TKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       228 ~~~~~~~~d~vld~~g~  244 (356)
                      .+.. +++|+++.+.|-
T Consensus        82 ~~~~-~~~Dili~~Aav   97 (226)
T 1u7z_A           82 NASV-QQQNIFIGCAAV   97 (226)
T ss_dssp             HHHG-GGCSEEEECCBC
T ss_pred             HHhc-CCCCEEEECCcc
Confidence            4433 359999999884

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.10  E-value=0.048  Score=47.68  Aligned_cols=86  Identities=14%  Similarity=0.061  Sum_probs=61.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch-h
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG-K  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-~  245 (356)
                      +|.|.|+ |.+|...+..+...|.+|++.++++++.+.++ +.|..   ..   .+..+.+.+     +|+||.|+.. .
T Consensus         7 ~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~---~~---~~~~~~~~~-----~D~vi~~v~~~~   73 (299)
T 1vpd_A            7 KVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAE---TA---STAKAIAEQ-----CDVIITMLPNSP   73 (299)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE---EC---SSHHHHHHH-----CSEEEECCSSHH
T ss_pred             eEEEECc-hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HCCCe---ec---CCHHHHHhC-----CCEEEEECCCHH
Confidence            7999996 99999988888888999999999999888887 55542   12   233333432     7999999984 3


Q ss_pred             hHHHHH-------HhcccCCEEEEEec
Q 042784          246 MLEAVL-------NHVNVHARIILCGM  265 (356)
Q Consensus       246 ~~~~~~-------~~l~~~G~~v~~g~  265 (356)
                      .+...+       ..++++..++.++.
T Consensus        74 ~~~~~~~~~~~l~~~l~~~~~vv~~s~  100 (299)
T 1vpd_A           74 HVKEVALGENGIIEGAKPGTVLIDMSS  100 (299)
T ss_dssp             HHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             HHHHHHhCcchHhhcCCCCCEEEECCC
Confidence            444443       45677777766543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.10  E-value=0.012  Score=52.10  Aligned_cols=102  Identities=18%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHH
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      +.....++++++||-.|+ |. |..+..+++..+  .+|++++.+++..+.+++.   .|... +.... .+..+...  
T Consensus        67 l~~~l~~~~~~~VLDiGc-G~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~-~d~~~~~~--  140 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGG-GT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVC-GDGYYGVP--  140 (317)
T ss_dssp             HHHHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEE-SCGGGCCG--
T ss_pred             HHHhcCCCCcCEEEEecC-Cc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEE-CChhhccc--
Confidence            334567899999999995 54 888888888754  3799999999988887743   24432 21111 11111111  


Q ss_pred             CCCCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          231 FPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       231 ~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      ..+.+|+|+...... ....+.+.|+|+|+++..
T Consensus       141 ~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          141 EFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             GGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             cCCCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEE
Confidence            124699999876654 336778899999998865

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.08  E-value=0.021  Score=48.79  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      +.+|+|.|+ |++|..+++.+...|. +|++++...
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            478999997 9999999999999998 899888765

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=96.08  E-value=0.025  Score=50.48  Aligned_cols=73  Identities=15%  Similarity=0.033  Sum_probs=46.1

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChH--HHHHHHHHhCCC--ce--eecCChhhHHHHHHHHCCCCceE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDD--NVKLLKEEFGYD--DA--FNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~--~~~~~~~~~g~~--~v--~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      .+|||+||+|.+|..+++.+...  |.+|++++++..  ..+.+. .+...  .+  .|..+...+.+.+     .++|+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~d~   78 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE-AILGDRVELVVGDIADAELVDKLA-----AKADA   78 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTG-GGCSSSEEEEECCTTCHHHHHHHH-----TTCSE
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHh-hhccCCeEEEECCCCCHHHHHHHh-----hcCCE
Confidence            58999999999999988877776  789999987542  112222 22111  11  2444323333333     34799


Q ss_pred             EEECCch
Q 042784          238 YLDNVGG  244 (356)
Q Consensus       238 vld~~g~  244 (356)
                      ||.++|.
T Consensus        79 vih~A~~   85 (348)
T 1oc2_A           79 IVHYAAE   85 (348)
T ss_dssp             EEECCSC
T ss_pred             EEECCcc
Confidence            9999873

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.07  E-value=0.1  Score=46.64  Aligned_cols=137  Identities=16%  Similarity=0.124  Sum_probs=79.4

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC-CCEEEE-EeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK-GCKVVG-STGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~-G~~V~~-~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      -+|.|.|+ |.+|...+..++.. ++++++ .++++++.+.+.+++|.. +  +   .++.+.+.   ...+|+|+.|+.
T Consensus         5 ~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~-~--~---~~~~~~l~---~~~~D~V~i~tp   74 (344)
T 3euw_A            5 LRIALFGA-GRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAE-A--V---ASPDEVFA---RDDIDGIVIGSP   74 (344)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCE-E--E---SSHHHHTT---CSCCCEEEECSC
T ss_pred             eEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCc-e--e---CCHHHHhc---CCCCCEEEEeCC
Confidence            37999997 99998877776665 677774 556677766665577732 2  2   23333332   246999999998


Q ss_pred             hh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEEEEEecccccchHHHHHHHHHHHHHcCCee
Q 042784          244 GK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       244 ~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      .. +...+..+++.+.+ +++..+....     ......+.... .+++.+.-..    ..++...+..+.+++++|.+-
T Consensus        75 ~~~h~~~~~~al~~gk~-v~~EKP~~~~-----~~~~~~l~~~a~~~g~~~~v~~----~~r~~p~~~~~k~~i~~g~iG  144 (344)
T 3euw_A           75 TSTHVDLITRAVERGIP-ALCEKPIDLD-----IEMVRACKEKIGDGASKVMLGF----NRRFDPSFAAINARVANQEIG  144 (344)
T ss_dssp             GGGHHHHHHHHHHTTCC-EEECSCSCSC-----HHHHHHHHHHHGGGGGGEEECC----GGGGCHHHHHHHHHHHTTTTS
T ss_pred             chhhHHHHHHHHHcCCc-EEEECCCCCC-----HHHHHHHHHHHHhcCCeEEecc----hhhcCHHHHHHHHHHhcCCCC
Confidence            86 66677777777655 4455443211     01111111111 2233222111    122335677888899998764


Q ss_pred             e
Q 042784          322 S  322 (356)
Q Consensus       322 ~  322 (356)
                      .
T Consensus       145 ~  145 (344)
T 3euw_A          145 N  145 (344)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.07  E-value=0.018  Score=51.08  Aligned_cols=89  Identities=10%  Similarity=0.035  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-SDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .|.+|.|.|. |.+|...++.++..|.+|++.++ +.++ ..+. ++|+. .   .  .++.+.+.+     .|+|+-++
T Consensus       145 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~-~~g~~-~---~--~~l~ell~~-----aDvVil~~  210 (320)
T 1gdh_A          145 DNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASS-SDEA-SYQAT-F---H--DSLDSLLSV-----SQFFSLNA  210 (320)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHH-HHTCE-E---C--SSHHHHHHH-----CSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhh-hcCcE-E---c--CCHHHHHhh-----CCEEEEec
Confidence            5789999996 99999999999999999999998 6665 3444 66763 1   1  134444433     79999887


Q ss_pred             chh-----hH-HHHHHhcccCCEEEEEecc
Q 042784          243 GGK-----ML-EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       243 g~~-----~~-~~~~~~l~~~G~~v~~g~~  266 (356)
                      ...     .+ ...+..+++++.++.++..
T Consensus       211 p~~~~t~~~i~~~~l~~mk~gailIn~arg  240 (320)
T 1gdh_A          211 PSTPETRYFFNKATIKSLPQGAIVVNTARG  240 (320)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred             cCchHHHhhcCHHHHhhCCCCcEEEECCCC
Confidence            632     22 4566788998888887753

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.06  E-value=0.0095  Score=49.82  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHH---hC-----CCce-eecCChhhHHHHHHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKEE---FG-----YDDA-FNYNSEMSFDAALTK  229 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~~---~g-----~~~v-~~~~~~~~~~~~i~~  229 (356)
                      .++++++||-.|+ | .|..+..+++..|  .+|++++.+++..+.+++.   .|     ...+ +...   +.....  
T Consensus        74 ~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---d~~~~~--  146 (226)
T 1i1n_A           74 QLHEGAKALDVGS-G-SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG---DGRMGY--  146 (226)
T ss_dssp             TSCTTCEEEEETC-T-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES---CGGGCC--
T ss_pred             hCCCCCEEEEEcC-C-cCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC---CcccCc--
Confidence            3788999999995 4 4888888888876  5999999999888877642   22     1111 1111   111000  


Q ss_pred             HCCCCceEEEECCch-hhHHHHHHhcccCCEEEEE
Q 042784          230 YFPNGIDVYLDNVGG-KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       230 ~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~  263 (356)
                      ...+.||+|+..... ..+..+.+.|+++|+++..
T Consensus       147 ~~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~  181 (226)
T 1i1n_A          147 AEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP  181 (226)
T ss_dssp             GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEE
Confidence            112469999877654 3567888999999998865

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.06  E-value=0.042  Score=46.96  Aligned_cols=86  Identities=16%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      -+|.|.|+ |.+|...+..+...|.+|.+.++++++.+.+.+++|...   +   .++.+.+.     .+|+|+.|+...
T Consensus         4 m~i~iiG~-G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~---~~~~~~~~-----~~D~Vi~~v~~~   71 (259)
T 2ahr_A            4 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY---A---MSHQDLID-----QVDLVILGIKPQ   71 (259)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB---C---SSHHHHHH-----TCSEEEECSCGG
T ss_pred             cEEEEECC-CHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe---e---CCHHHHHh-----cCCEEEEEeCcH
Confidence            37999996 999999888887788899999999988887775667542   2   23333333     389999999877


Q ss_pred             hHHHHHHhcccCCEEEEE
Q 042784          246 MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       246 ~~~~~~~~l~~~G~~v~~  263 (356)
                      .....+..++++..++..
T Consensus        72 ~~~~v~~~l~~~~~vv~~   89 (259)
T 2ahr_A           72 LFETVLKPLHFKQPIISM   89 (259)
T ss_dssp             GHHHHHTTSCCCSCEEEC
T ss_pred             hHHHHHHHhccCCEEEEe
Confidence            777777777766555544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.05  E-value=0.14  Score=45.52  Aligned_cols=138  Identities=13%  Similarity=0.077  Sum_probs=81.4

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC-CCEEEEE-eCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK-GCKVVGS-TGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~-~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      -+|.|.|. |.+|...+..++.. +++++++ ++++++.+.+.+++|...++     .++.+.+..   ..+|+|+.|+.
T Consensus         6 ~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~-----~~~~~ll~~---~~~D~V~i~tp   76 (330)
T 3e9m_A            6 IRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAY-----GSYEELCKD---ETIDIIYIPTY   76 (330)
T ss_dssp             EEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCB-----SSHHHHHHC---TTCSEEEECCC
T ss_pred             EEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCcee-----CCHHHHhcC---CCCCEEEEcCC
Confidence            47999997 99998877777665 6687755 55667766666578874333     344444432   46999999998


Q ss_pred             hh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh-hccceEEEEEecccccchHHHHHHHHHHHHHcCCee
Q 042784          244 GK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM-IGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       244 ~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      .. +.+.+..+++.+.+ +++..+....     ......+... -.+++.+.-..    ..++...++.+.+++++|.+-
T Consensus        77 ~~~h~~~~~~al~~gk~-vl~EKP~~~~-----~~e~~~l~~~a~~~g~~~~v~~----~~r~~p~~~~~k~~i~~g~iG  146 (330)
T 3e9m_A           77 NQGHYSAAKLALSQGKP-VLLEKPFTLN-----AAEAEELFAIAQEQGVFLMEAQ----KSVFLPITQKVKATIQEGGLG  146 (330)
T ss_dssp             GGGHHHHHHHHHHTTCC-EEECSSCCSS-----HHHHHHHHHHHHHTTCCEEECC----SGGGCHHHHHHHHHHHTTTTC
T ss_pred             CHHHHHHHHHHHHCCCe-EEEeCCCCCC-----HHHHHHHHHHHHHcCCeEEEEE----hhhhCHHHHHHHHHHhCCCCC
Confidence            86 66777777877655 4455443211     0011111111 12333332111    122335577888889988764


Q ss_pred             e
Q 042784          322 S  322 (356)
Q Consensus       322 ~  322 (356)
                      .
T Consensus       147 ~  147 (330)
T 3e9m_A          147 E  147 (330)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.05  E-value=0.055  Score=47.06  Aligned_cols=87  Identities=13%  Similarity=0.063  Sum_probs=61.3

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch-
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG-  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-  244 (356)
                      .+|.|.|. |.+|......+...|.+|++.++++++.+.+. +.|...   .   .+..+.+.+     .|+||-|+.. 
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~---~---~~~~~~~~~-----aDvvi~~vp~~   68 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGCSVTIWNRSPEKAEELA-ALGAER---A---ATPCEVVES-----CPVTFAMLADP   68 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-HTTCEE---C---SSHHHHHHH-----CSEEEECCSSH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCCee---c---CCHHHHHhc-----CCEEEEEcCCH
Confidence            47999996 99999999888889999999999999988887 556431   1   234444433     6888888874 


Q ss_pred             hhHHHHH-------HhcccCCEEEEEec
Q 042784          245 KMLEAVL-------NHVNVHARIILCGM  265 (356)
Q Consensus       245 ~~~~~~~-------~~l~~~G~~v~~g~  265 (356)
                      ......+       ..++++..++.++.
T Consensus        69 ~~~~~v~~~~~~l~~~l~~~~~vi~~st   96 (287)
T 3pef_A           69 AAAEEVCFGKHGVLEGIGEGRGYVDMST   96 (287)
T ss_dssp             HHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHcCcchHhhcCCCCCEEEeCCC
Confidence            3333333       45666666665543

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=96.04  E-value=0.026  Score=63.93  Aligned_cols=82  Identities=16%  Similarity=0.077  Sum_probs=58.5

Q ss_pred             CCCCEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEeCChHH-----HHHHHHHhCCC--c----eeecCChhhHHHHHHHH
Q 042784          163 KSGSNVFVSAAAGG-VGMFAGQLAKLKGCKVVGSTGSDDN-----VKLLKEEFGYD--D----AFNYNSEMSFDAALTKY  230 (356)
Q Consensus       163 ~~g~~VlV~g~~g~-vG~~~i~la~~~G~~V~~~~~s~~~-----~~~~~~~~g~~--~----v~~~~~~~~~~~~i~~~  230 (356)
                      -.|+++||+||++| +|.++++.+...|++|++++++.++     .+.+.++++..  .    ..|..+..++.+.+.++
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence            46899999999999 9999999999999999999987665     44444355431  1    13455545555555544


Q ss_pred             CC------CCceEEEECCch
Q 042784          231 FP------NGIDVYLDNVGG  244 (356)
Q Consensus       231 ~~------~~~d~vld~~g~  244 (356)
                      ..      +++|+++++.|.
T Consensus      2214 ~~~~~~~fG~IDILVNNAGi 2233 (3089)
T 3zen_D         2214 GTEQTESLGPQSIHLKDAQT 2233 (3089)
T ss_dssp             TSCCEEEESSSEEEECCCCC
T ss_pred             HhhhhhhcCCCCEEEECCCc
Confidence            33      479999998874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.04  E-value=0.032  Score=48.25  Aligned_cols=89  Identities=10%  Similarity=0.181  Sum_probs=61.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce-eecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA-FNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v-~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      .+|||+|+ |.+|...+..+...|.+|+++++++++...+. ..+...+ .|..   ++.       -.++|+||.+++.
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~---d~~-------~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGE---EPS-------LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSS---CCC-------CTTCCEEEECCCC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEeccc---ccc-------cCCCCEEEECCCc
Confidence            58999998 99999999999888999999999998887776 4454321 2222   211       2569999999874


Q ss_pred             h-----hHHHHHHhccc----CCEEEEEecc
Q 042784          245 K-----MLEAVLNHVNV----HARIILCGMI  266 (356)
Q Consensus       245 ~-----~~~~~~~~l~~----~G~~v~~g~~  266 (356)
                      .     .....++.++.    -++++.++..
T Consensus        74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~  104 (286)
T 3ius_A           74 DSGGDPVLAALGDQIAARAAQFRWVGYLSTT  104 (286)
T ss_dssp             BTTBCHHHHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred             cccccHHHHHHHHHHHhhcCCceEEEEeecc
Confidence            1     23334444432    3688877654

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=96.04  E-value=0.012  Score=56.19  Aligned_cols=72  Identities=29%  Similarity=0.319  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+.+++|+|+ |++|.+++..+...|++|+++.++.++.+.+.++++.. +.++.+       +.++....+|++++++|
T Consensus       363 ~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~-~~~~~d-------l~~~~~~~~DilVN~ag  433 (523)
T 2o7s_A          363 ASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGK-ALSLTD-------LDNYHPEDGMVLANTTS  433 (523)
T ss_dssp             ---CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC--CEETTT-------TTTC--CCSEEEEECSS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCc-eeeHHH-------hhhccccCceEEEECCC
Confidence            4678999998 89999999999899999999999988887776677643 344321       11111135899999998


Q ss_pred             h
Q 042784          244 G  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus       434 v  434 (523)
T 2o7s_A          434 M  434 (523)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=96.02  E-value=0.054  Score=49.39  Aligned_cols=39  Identities=21%  Similarity=0.116  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD  200 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~  200 (356)
                      ...+.+|||+||+|-+|..++..+...|.+|+++++...
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~   46 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVR   46 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            456899999999999999999888888999999987543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.99  E-value=0.018  Score=50.00  Aligned_cols=96  Identities=11%  Similarity=0.014  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh-----CC--CceeecCChhhHHHHHHHHCCCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEF-----GY--DDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~-----g~--~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ..+.+||+.|+  |.|..+..+++..+. +|++++.+++-.+.+++.+     +.  ..+--..  .+..+.+.+ ..+.
T Consensus        74 ~~~~~VLdiG~--G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~--~D~~~~l~~-~~~~  148 (275)
T 1iy9_A           74 PNPEHVLVVGG--GDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV--DDGFMHIAK-SENQ  148 (275)
T ss_dssp             SSCCEEEEESC--TTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE--SCSHHHHHT-CCSC
T ss_pred             CCCCEEEEECC--chHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE--CcHHHHHhh-CCCC
Confidence            35689999994  457778888887665 9999999999888888544     21  1111111  223333332 2357


Q ss_pred             ceEEEECCc-----------hhhHHHHHHhcccCCEEEEE
Q 042784          235 IDVYLDNVG-----------GKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       235 ~d~vld~~g-----------~~~~~~~~~~l~~~G~~v~~  263 (356)
                      +|+|+-...           .+.+..+.+.|+++|.++..
T Consensus       149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            999986432           24788999999999998865

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.99  E-value=0.019  Score=51.55  Aligned_cols=91  Identities=16%  Similarity=0.096  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAK-LKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~-~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      -.|.+|.|.|. |.+|...++.++ ..|.+|++.+++.++.+... ++|... .     .++.+.+.+     .|+|+.+
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-~~g~~~-~-----~~l~ell~~-----aDvVil~  227 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-ALGAER-V-----DSLEELARR-----SDCVSVS  227 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-HHTCEE-C-----SSHHHHHHH-----CSEEEEC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-hcCcEE-e-----CCHHHHhcc-----CCEEEEe
Confidence            45889999996 999999999999 99999999998876666555 566531 1     133333433     7888888


Q ss_pred             Cchh-----hH-HHHHHhcccCCEEEEEecc
Q 042784          242 VGGK-----ML-EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       242 ~g~~-----~~-~~~~~~l~~~G~~v~~g~~  266 (356)
                      +...     .+ ...+..++++..++.++..
T Consensus       228 vp~~~~t~~li~~~~l~~mk~gailin~srg  258 (348)
T 2w2k_A          228 VPYMKLTHHLIDEAFFAAMKPGSRIVNTARG  258 (348)
T ss_dssp             CCCSGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred             CCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence            7541     22 3566778887777766543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=95.99  E-value=0.018  Score=51.17  Aligned_cols=97  Identities=22%  Similarity=0.218  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCC------CceeecCChhhHHHHHHHHCCCCc
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGY------DDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~------~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ..+.+||..|  +|.|..+..+++..+ .+|++++.+++-.+.+++.+..      +.-+.... .+..+.+.. ..+.|
T Consensus       115 ~~~~~VLdiG--~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~-~D~~~~l~~-~~~~f  190 (321)
T 2pt6_A          115 KEPKNVLVVG--GGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI-EDASKFLEN-VTNTY  190 (321)
T ss_dssp             SSCCEEEEEE--CTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE-SCHHHHHHH-CCSCE
T ss_pred             CCCCEEEEEc--CCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE-ccHHHHHhh-cCCCc
Confidence            4568999999  455777888888764 5999999999999998854432      11111111 334433432 24579


Q ss_pred             eEEEE-CC---c-------hhhHHHHHHhcccCCEEEEE
Q 042784          236 DVYLD-NV---G-------GKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       236 d~vld-~~---g-------~~~~~~~~~~l~~~G~~v~~  263 (356)
                      |+|+- ..   +       .+.+..+.+.|+++|.++..
T Consensus       191 DvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          191 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             EEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            99984 32   1       24678888999999999865

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=95.99  E-value=0.1  Score=46.79  Aligned_cols=137  Identities=14%  Similarity=0.176  Sum_probs=83.5

Q ss_pred             CEEEEEcCCChHHHH-HHHHHHHC-CCEEEEEe-CChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMF-AGQLAKLK-GCKVVGST-GSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~-~i~la~~~-G~~V~~~~-~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      =+|.|.|+ |.+|.. .+...+.. +++|++++ +++++.+.+.+++|...++     .++.+.+.+   ..+|+|+-|+
T Consensus        24 irigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y-----~d~~ell~~---~~iDaV~I~t   94 (350)
T 4had_A           24 LRFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAF-----GSYEEMLAS---DVIDAVYIPL   94 (350)
T ss_dssp             EEEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEE-----SSHHHHHHC---SSCSEEEECS
T ss_pred             cEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeee-----CCHHHHhcC---CCCCEEEEeC
Confidence            47999996 999964 35555544 77888665 4566777666689987554     345554442   5799999999


Q ss_pred             chh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEEEEEecccccchHHHHHHHHHHHHHcCCe
Q 042784          243 GGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       243 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i  320 (356)
                      ... +.+.+..+|+.+- -|++.-+...+     ......+.... .+++.+.-..    ..++...+..+.+++++|.|
T Consensus        95 P~~~H~~~~~~al~aGk-hVl~EKPla~~-----~~ea~~l~~~a~~~~~~l~v~~----~~R~~p~~~~~k~~i~~G~i  164 (350)
T 4had_A           95 PTSQHIEWSIKAADAGK-HVVCEKPLALK-----AGDIDAVIAARDRNKVVVTEAY----MITYSPVWQKVRSLIDEGAI  164 (350)
T ss_dssp             CGGGHHHHHHHHHHTTC-EEEECSCCCSS-----GGGGHHHHHHHHHHTCCEEECC----GGGGSHHHHHHHHHHHTTTT
T ss_pred             CCchhHHHHHHHHhcCC-EEEEeCCcccc-----hhhHHHHHHHHHHcCCceeEee----eeecCHHHHHhhHhhhcCCC
Confidence            875 7788888887754 46676655421     11111111111 2233332111    12233567788889999876


Q ss_pred             e
Q 042784          321 R  321 (356)
Q Consensus       321 ~  321 (356)
                      -
T Consensus       165 G  165 (350)
T 4had_A          165 G  165 (350)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.98  E-value=0.017  Score=52.03  Aligned_cols=108  Identities=13%  Similarity=0.149  Sum_probs=69.8

Q ss_pred             hhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCC----hHH---------HHHHHHHhCCCc
Q 042784          148 PGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGS----DDN---------VKLLKEEFGYDD  213 (356)
Q Consensus       148 ~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s----~~~---------~~~~~~~~g~~~  213 (356)
                      .....+.++...++--++.+|+|.|+ |..|..+++++...|+ +|++++++    .+|         ..+++ +...  
T Consensus       175 ~lAal~~A~~i~g~~l~~~kVVv~GA-GaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~-~~~~--  250 (388)
T 1vl6_A          175 VSAAFLNALKLTEKKIEEVKVVVNGI-GAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIAR-ITNP--  250 (388)
T ss_dssp             HHHHHHHHHHHHTCCTTTCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHH-TSCT--
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHH-hhhc--
Confidence            33444444543343335789999998 9999999999999999 89999977    444         23333 2221  


Q ss_pred             eeecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEeccc
Q 042784          214 AFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       214 v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                         .....++.+.++     ++|++|-+++.. .-.+.++.|+++-.++.++.+.
T Consensus       251 ---~~~~~~L~eav~-----~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          251 ---ERLSGDLETALE-----GADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             ---TCCCSCHHHHHT-----TCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             ---cCchhhHHHHHc-----cCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCCCC
Confidence               111145666664     489999998843 2345556687777666655543

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=95.97  E-value=0.03  Score=51.01  Aligned_cols=36  Identities=19%  Similarity=0.040  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHH-HCCCEEEEEeCChH
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAK-LKGCKVVGSTGSDD  200 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~-~~G~~V~~~~~s~~  200 (356)
                      +.+|||+||+|.+|..+++.+. ..|.+|++++++..
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   38 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVG   38 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            3489999999999999998887 89999999987644

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.95  E-value=0.009  Score=51.14  Aligned_cols=87  Identities=11%  Similarity=0.029  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .+ +++|.|+ |++|.+++..+...|+ +|++..++.++.+.+.++++.   ..+   .++.+.+.     .+|+||.|+
T Consensus       108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~---~~~~~~~~-----~aDiVInat  174 (253)
T 3u62_A          108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL---DQLDEVVK-----KAKSLFNTT  174 (253)
T ss_dssp             CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG---GGHHHHHH-----TCSEEEECS
T ss_pred             CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH---HHHHhhhc-----CCCEEEECC
Confidence            46 9999997 9999999999999999 999999998887765433331   222   33444443     389999988


Q ss_pred             chh------hHHHHHHhcccCCEEEEEec
Q 042784          243 GGK------MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       243 g~~------~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ...      .+  ....++++..++.+..
T Consensus       175 p~gm~p~~~~i--~~~~l~~~~~V~Divy  201 (253)
T 3u62_A          175 SVGMKGEELPV--SDDSLKNLSLVYDVIY  201 (253)
T ss_dssp             STTTTSCCCSC--CHHHHTTCSEEEECSS
T ss_pred             CCCCCCCCCCC--CHHHhCcCCEEEEeeC
Confidence            531      11  1234566666665544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=95.94  E-value=0.014  Score=48.16  Aligned_cols=96  Identities=20%  Similarity=0.161  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCCceE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      .++.+||-.|  .+.|..++.+++..  +.+|++++.+++..+.+++.   .|....+.... .+..+.+... .+ ||+
T Consensus        55 ~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~-~~-fD~  129 (210)
T 3c3p_A           55 KQPQLVVVPG--DGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQV-GDPLGIAAGQ-RD-IDI  129 (210)
T ss_dssp             HCCSEEEEES--CGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEE-SCHHHHHTTC-CS-EEE
T ss_pred             hCCCEEEEEc--CCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEE-ecHHHHhccC-CC-CCE
Confidence            4578999998  56788888999876  56999999999888877642   33321121111 2333333222 34 999


Q ss_pred             EEECCch----hhHHHHHHhcccCCEEEEE
Q 042784          238 YLDNVGG----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       238 vld~~g~----~~~~~~~~~l~~~G~~v~~  263 (356)
                      |+-....    ..+..+.+.|+++|.++.-
T Consensus       130 v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          130 LFMDCDVFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EEEETTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEcCChhhhHHHHHHHHHhcCCCeEEEEE
Confidence            9853322    3678888999999998864

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=95.94  E-value=0.056  Score=48.01  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC----hHHHHHHHHHhCCC-ce--eecCChhhHHHHHHHHCCCCceEEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS----DDNVKLLKEEFGYD-DA--FNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s----~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      +|||+||+|.+|..+++.+...|.+|+++++.    .+..+.+.+..+.. ..  .|..+...+.+.+.+   .++|+||
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~D~vi   78 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD---HAIDTVI   78 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHH---TTCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhc---cCCCEEE
Confidence            69999999999999999888899999988743    22333333112321 12  244443344444443   2599999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      .+.|
T Consensus        79 h~A~   82 (338)
T 1udb_A           79 HFAG   82 (338)
T ss_dssp             ECCS
T ss_pred             ECCc
Confidence            9987

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=95.94  E-value=0.0081  Score=50.41  Aligned_cols=77  Identities=10%  Similarity=0.108  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC----------------CChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHH
Q 042784          164 SGSNVFVSAA----------------AGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAAL  227 (356)
Q Consensus       164 ~g~~VlV~g~----------------~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i  227 (356)
                      .|.+|||+||                +|.+|.+.++.+...|++|+.+.+... ..... ..|. .+++.....++.+.+
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~-~~~~~-~~~~-~~~~v~s~~em~~~v   78 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRA-LKPEP-HPNL-SIREITNTKDLLIEM   78 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTS-CCCCC-CTTE-EEEECCSHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcc-ccccC-CCCe-EEEEHhHHHHHHHHH
Confidence            4789999999                888999999999999999999986532 11000 0122 355555545555666


Q ss_pred             HHHCCCCceEEEECCch
Q 042784          228 TKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       228 ~~~~~~~~d~vld~~g~  244 (356)
                      .+.. +++|++|.+.+-
T Consensus        79 ~~~~-~~~Dili~aAAv   94 (232)
T 2gk4_A           79 QERV-QDYQVLIHSMAV   94 (232)
T ss_dssp             HHHG-GGCSEEEECSBC
T ss_pred             HHhc-CCCCEEEEcCcc
Confidence            5544 459999998873

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.94  E-value=0.015  Score=51.34  Aligned_cols=99  Identities=12%  Similarity=0.113  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCC------CceeecCChhhHHHHHHHHCCCC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGY------DDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~------~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ...+.+||..|  +|.|..+..+++..+ .+|++++.+++-.+.+++.+..      ..-+.... .+..+.+.. ..+.
T Consensus        93 ~~~~~~VLdiG--~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~-~~~~  168 (304)
T 2o07_A           93 HPNPRKVLIIG--GGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV-GDGFEFMKQ-NQDA  168 (304)
T ss_dssp             SSSCCEEEEEE--CTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-SCHHHHHHT-CSSC
T ss_pred             CCCCCEEEEEC--CCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE-CcHHHHHhh-CCCC
Confidence            45678999999  456777888888765 4999999999988888754321      11111111 233333332 3457


Q ss_pred             ceEEEE-CCc----------hhhHHHHHHhcccCCEEEEEe
Q 042784          235 IDVYLD-NVG----------GKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       235 ~d~vld-~~g----------~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ||+|+. ...          .+.+..+.+.|+++|.++.-.
T Consensus       169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          169 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            999984 332          135788899999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	3e-30
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	1e-27
d1vj1a1	166	b.35.1.2 (A:-1-124,A:312-351) Putative zinc-bindin	9e-19
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	1e-17
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	9e-17
d1v3va1	147	b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hyd	2e-16
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	7e-16
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	1e-15
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	1e-14
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	3e-13
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	7e-13
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	6e-12
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	4e-11
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	6e-10
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	1e-09
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	9e-09
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	3e-06
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	5e-06
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	5e-04
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	0.002

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (279), Expect = 3e-30
 Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 141 YLSSLGIPGFAAWVGIEVLGQPKSGSN--VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS 198
           +L ++G+PG  + +G++  G   +GSN  + VS AAG  G  AGQ+  L GC  V     
Sbjct: 5   FLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG 64

Query: 199 DDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHA 258
                L        DA       +    L +  P G+DVY DNVGG +   V++ +N ++
Sbjct: 65  TQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENS 124

Query: 259 RIILCGMISQYNKVWTERDGV--RNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIK 316
            IILCG ISQYNK       +          + +  E F + ++ D+F    +++  + K
Sbjct: 125 HIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFK 184

Query: 317 EGK 319
           EGK
Sbjct: 185 EGK 187

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score =  105 bits (261), Expect = 1e-27
 Identities = 66/184 (35%), Positives = 99/184 (53%), Gaps = 3/184 (1%)

Query: 136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS 195
           +P    L ++G+PG  A+ G+  +   K G  V VSAAAG VG   GQ+AKLKGCKVVG+
Sbjct: 1   LPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGA 60

Query: 196 TGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVN 255
            GSD+ +  LK+                + AL K  P+G D Y DNVGG+ L  VL+ + 
Sbjct: 61  AGSDEKIAYLKQIGFDAAFNYKTVNS-LEEALKKASPDGYDCYFDNVGGEFLNTVLSQMK 119

Query: 256 VHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESY 314
              +I +CG IS YN++     G     ++I K++++EGF++     D       ++  +
Sbjct: 120 DFGKIAICGAISVYNRMDQLPPGPSP-ESIIYKQLRIEGFIVYRWQGDVREKALRDLMKW 178

Query: 315 IKEG 318
           + EG
Sbjct: 179 VLEG 182

>d1vj1a1 b.35.1.2 (A:-1-124,A:312-351) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 166

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.2 bits (197), Expect = 9e-19
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 3/150 (2%)

Query: 24  DGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLN 83
           +G P +++ ++   S+   +D++ +  V V TL++S+DPY+R  M       Y   + L 
Sbjct: 17  NGNPVAENFRVEEFSL---LDALNEGQVQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLA 73

Query: 84  QVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS 143
           QV    GI  V  SK  K + GD V   + P    ++L  + L +               
Sbjct: 74  QVADGGGIGIVEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGLKVKETV 133

Query: 144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAA 173
           + G+          + G       V +S  
Sbjct: 134 AKGLENMGVAFQSMMTGGNVGKQIVCISED 163

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 77.7 bits (190), Expect = 1e-17
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 20/190 (10%)

Query: 143 SSLGIPGFAAWVGIEVLGQPKSGSNVFV-SAAAGGVGMFAGQLAKLKGCKVVGSTG---S 198
           +++ +    A++ +    +   G + F+ +     VG +A Q+ KL     +       +
Sbjct: 7   ATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN 66

Query: 199 DDNVKLLKEEFGYDDAFNYNSEMSFD-----AALTKYFPNGIDVYLDNVGGKMLEAVLNH 253
            D V    +E G       +   S +         K       + L+ VGGK    +   
Sbjct: 67  LDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARK 126

Query: 254 VNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMES 313
           +N +  ++  G +S                  I K     GF +   +    +      +
Sbjct: 127 LNNNGLMLTYGGMSFQPVTIPTSL-------YIFKNFTSAGFWVTELLKNNKELKTSTLN 179

Query: 314 ----YIKEGK 319
               + +EGK
Sbjct: 180 QIIAWYEEGK 189

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 74.6 bits (182), Expect = 9e-17
 Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 14/175 (8%)

Query: 146 GIPGFAAWVGIEVL---GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
           G  GF A + +  L   G      +V V+ A GGVG  A  +   +G  VV STG+ +  
Sbjct: 2   GTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 61

Query: 203 KLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIIL 262
             L        +   + E  +D  L           +D VGGK L ++L+ +     + +
Sbjct: 62  DYL---KQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAV 118

Query: 263 CGMISQYNKVWTERDGVRNLLNMIGKEVKMEGF-MIGSHMDRFADFTVEMESYIK 316
            G+                +   I + V + G   +   MD  A     M S +K
Sbjct: 119 SGLTGGGEVPA-------TVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLK 166

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 73.5 bits (180), Expect = 2e-16
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 21/164 (12%)

Query: 11  VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTG 70
           V++K W +  +   G PT    +L     ++ +  + +  V +E L++S+DPY+R     
Sbjct: 2   VKAKSWTLKKHF-QGKPTQSDFEL----KTVELPPLKNGEVLLEALFLSVDPYMRIAS-- 54

Query: 71  TNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKL 130
                   +     V++   +ARV+ SK+S +  G IVL A      + +        KL
Sbjct: 55  -------KRLKEGAVMMGQQVARVVESKNSAFPAGSIVL-AQSGWTTHFIS-DGKGLEKL 105

Query: 131 DPASGIPFP--DYLSSLGIPGF-AAWVGIEVLGQPKSGSNVFVS 171
                          + G     AA++ +  L     G  V  +
Sbjct: 106 LTEWPDKKIQYHEHVTKGFENMPAAFIEM--LNGANLGKAVVTA 147

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 72.6 bits (177), Expect = 7e-16
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 16/179 (8%)

Query: 144 SLGIPGFAAWV---GIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD 200
            +G  GF A +    +E  G       + V+ A+GGVG  A  L    G +VV  +G + 
Sbjct: 8   IIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 67

Query: 201 NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARI 260
             + LK             E +    L K         +D VG K+L  VL  +N    +
Sbjct: 68  THEYLKSL--GASRVLPRDEFAESRPLEK---QVWAGAIDTVGDKVLAKVLAQMNYGGCV 122

Query: 261 ILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH-MDRFADFTVEMESYIKEG 318
             CG+   +            ++  I + V+++G        +R A     + + + E 
Sbjct: 123 AACGLAGGFTLPT-------TVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPES 174

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 72.0 bits (175), Expect = 1e-15
 Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 4/179 (2%)

Query: 143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
           ++ G+    AW  +  +G+   G  V + +A GGVGM A  +AK      + +T   D  
Sbjct: 4   ATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAK-MIGARIYTTAGSDAK 62

Query: 203 KLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIIL 262
           + +    G +   +  S    D  L      G+DV L+++ G+ ++  +  +    R I 
Sbjct: 63  REMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIE 122

Query: 263 CGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGKIR 321
            G    Y        G+  L       V      +     R+      +  ++ +GK+ 
Sbjct: 123 LGKKDVYA---DASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLE 178

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 68.7 bits (167), Expect = 1e-14
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 144 SLGIPGFAAWVGIEVL---GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD 200
           ++G  GF A + I  L   G       V V+ A GGVG  A  +   +G  V  STG   
Sbjct: 8   AIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA 67

Query: 201 NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARI 260
               L+             E      +           +D VGG+ L  VL+ +     +
Sbjct: 68  EHDYLRV---LGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAV 124

Query: 261 ILCGMISQYNKVWTERDGVRNLLNMIG 287
            + G+        T    +   ++++G
Sbjct: 125 AVSGLTGGAEVPTTVHPFILRGVSLLG 151

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 64.9 bits (157), Expect = 3e-13
 Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 12/185 (6%)

Query: 136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS 195
           +P  + L  LG              +    S+     A G VG+ A   AK+ G  ++ +
Sbjct: 1   VPI-ELLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIA 58

Query: 196 TGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHV 254
               ++   L ++ G     N  ++    AA+ +    G++  L++ G   +L+  ++ +
Sbjct: 59  VDIVESRLELAKQLGATHVINSKTQ-DPVAAIKEITDGGVNFALESTGSPEILKQGVDAL 117

Query: 255 NVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESY 314
            +  +I + G                ++ +++     + G + GS   +   F  E+   
Sbjct: 118 GILGKIAVVGAPQLGTTAQF------DVNDLLLGGKTILGVVEGSGSPK--KFIPELVRL 169

Query: 315 IKEGK 319
            ++GK
Sbjct: 170 YQQGK 174

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 7e-13
 Identities = 23/184 (12%), Positives = 45/184 (24%), Gaps = 10/184 (5%)

Query: 137 PFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST 196
           P  D +  LG      +       + + GS   V    G               +++G  
Sbjct: 2   PL-DKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60

Query: 197 GSDDNVKLLKEEFGYDDAFNYNSEM-SFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVN 255
            + D     KE FG  +  N           L +    G+D   + +G   +        
Sbjct: 61  INKDKFARAKE-FGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC 119

Query: 256 VHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYI 315
                +   +    +               +      +G   G       +   ++ S  
Sbjct: 120 HKGWGVSVVVGVAASGEEIA-----TRPFQLVTGRTWKGTAFGGWKSV--ESVPKLVSEY 172

Query: 316 KEGK 319
              K
Sbjct: 173 MSKK 176

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 6e-12
 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVK 203
           ++GIP F A+  +      K+G +V V  A+GGVG+ A Q+A+  G K++G+ G+++  K
Sbjct: 8   AIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK 67

Query: 204 LLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILC 263
           +   + G  + FN+      D         GID+ ++ +    L   L+ ++   R+I+ 
Sbjct: 68  I-VLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVV 126

Query: 264 GMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHM-DRFADFTVEMESYIKEG 318
           G                N  + + KE  + G  + S   + F  +   +++ ++ G
Sbjct: 127 GSRGTIEI---------NPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIG 173

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 59.2 bits (142), Expect = 4e-11
 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 10/167 (5%)

Query: 140 DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD 199
           D L+     G  A+   +   +  +G  V +   AG +G+F   +A+  G + V      
Sbjct: 4   DVLAMAMCSGATAYHAFDEYPESFAGKTVVIQ-GAGPLGLFGVVIARSLGAENVIVIAGS 62

Query: 200 DNVKLLKEEFGYDDAFNYNS---EMSFDAALTKYFPNGIDVYLDNVGG-KMLEAVLNHVN 255
            N   L EE G D   N      E    A +      G D  L+  G  + L      + 
Sbjct: 63  PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122

Query: 256 VHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMD 302
                 + G+    + V       +    ++ K    +G  +     
Sbjct: 123 RGGFYSVAGVAVPQDPV-----PFKVYEWLVLKNATFKGIWVSDTSH 164

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 53.0 bits (127), Expect = 6e-10
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 144 SLGIPGFAAW---VGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD 200
            +G  GF A    + +E  G       + V+ A+GGVG  A  L    G +VV  +G + 
Sbjct: 8   IIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 67

Query: 201 NVKLLKE 207
             + LK 
Sbjct: 68  THEYLKS 74

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 36/184 (19%), Positives = 56/184 (30%), Gaps = 11/184 (5%)

Query: 137 PFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST 196
           P  D +  LG      +       + + GS   V    G VG+ A       G K + + 
Sbjct: 2   PL-DTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAV 59

Query: 197 GSDDNVKLLKEEFGYDDAFNYNSE-MSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVN 255
             + +     + FG  D  N N         L+K    G+D  L+ VG   +        
Sbjct: 60  DLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNA---- 115

Query: 256 VHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYI 315
                 L G        WT+   V      +      +G M G    +  D   +M    
Sbjct: 116 --LESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKGK--DGVPKMVKAY 171

Query: 316 KEGK 319
            + K
Sbjct: 172 LDKK 175

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 52.2 bits (124), Expect = 9e-09
 Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 12/179 (6%)

Query: 143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV 202
             +G      +       +   GS   V    GGVG  A    K  G   +   G+  + 
Sbjct: 6   CLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDK 64

Query: 203 KLLKEEFGYDDAFNYNSEMSFDAALTKYFPNG--IDVYLDNVGGKMLEAVLNHVNVHARI 260
                E G  +  N          +     NG            + +   L      + +
Sbjct: 65  FPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGV 124

Query: 261 ILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGK 319
            +   ++  N+       +  LL + G+ +K  G + G          V+      + K
Sbjct: 125 TVVLGLASPNERLP----LDPLLLLTGRSLK--GSVFGGFKGEEVSRLVDD---YMKKK 174

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 152 AWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY 211
            + G         GS V+V+ A G VG+ A   A+L G  VV     +       +  G+
Sbjct: 14  GYHGAV-TAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF 71

Query: 212 DDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG----------------KMLEAVLNHVN 255
           + A         +          +D  +D VG                  +L +++    
Sbjct: 72  EIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTR 131

Query: 256 VHARIILCGMISQYN 270
           V  +I + G+    +
Sbjct: 132 VAGKIGIPGLYVTED 146

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 30/183 (16%), Positives = 53/183 (28%), Gaps = 15/183 (8%)

Query: 140 DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD 199
           + +  +G    + +       +   GS   V    G VG+ A    K+ G   + +   +
Sbjct: 4   ERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDIN 62

Query: 200 DNVKLLKEEFGYDDAFNYNSEMSFDAALTKY-FPNGIDVYLDNVGGK--MLEAVLNHVNV 256
                  +  G  D  N          +       G+D  LD  G    +  AV   V  
Sbjct: 63  GEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLG 122

Query: 257 HARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIK 316
                + G       + T       +  ++G+ +   G   G       D    + S  K
Sbjct: 123 WGSCTVVGAKVDEMTIPT-------VDVILGRSIN--GTFFGGWKSV--DSVPNLVSDYK 171

Query: 317 EGK 319
             K
Sbjct: 172 NKK 174

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 11/164 (6%)

Query: 139 PDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS 198
           P+ +  +G      +      G+ K GS   V    GGVG+      K  G   +     
Sbjct: 4   PEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDL 62

Query: 199 DDNVKLLKEEFGYDDAFNYNSEMSFDAALTK-YFPNGIDVYLDNVGGK--MLEAVLNHVN 255
           + +        G  +  +        + +      N +    + +G    M++A+ +   
Sbjct: 63  NKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHM 122

Query: 256 VHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS 299
            +   ++ G+      +         +L   G+  K  G + G 
Sbjct: 123 NYGTSVVVGVPPSAKMLTY-----DPMLLFTGRTWK--GCVFGG 159

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 29  SDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILA 88
            D L  +S    +  D++  + V V+TL   ++P     + G                 A
Sbjct: 16  KDVLFTQS--FEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPA 73

Query: 89  FG-IARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGI 147
                  +       S+   +      +  +            +    I  P+   S   
Sbjct: 74  APCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKAN 133

Query: 148 PGF----AAWVGIEVLGQPKSGSNVFVSAAA-GGVGMFAGQ 183
                   A     +    K    ++    A    G     
Sbjct: 134 GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.96
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.96
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.95
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.95
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.94
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.94
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.94
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.93
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.93
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.93
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.93
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.93
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.93
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.93
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.92
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.92
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.92
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.92
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.92
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.92
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.92
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.92
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.92
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.92
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.92
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.91
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.91
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.91
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.9
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.9
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.9
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.9
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.89
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.89
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.89
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.89
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.88
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.87
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.87
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.86
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.86
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.84
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.83
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.83
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.82
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.8
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.64
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.46
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.18
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.15
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.15
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	98.13
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.1
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.09
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.07
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.04
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.04
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	98.02
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	98.02
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.01
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.0
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.0
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.97
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.96
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.96
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.95
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.94
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.91
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.9
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.89
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.88
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.88
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.86
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.85
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.84
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.84
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.82
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.8
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.79
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.79
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.78
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.76
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.76
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.76
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.75
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.73
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.72
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.72
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.71
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.66
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.65
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.61
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.58
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.57
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.57
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.56
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.55
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.53
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.53
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.51
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.5
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.5
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.5
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.47
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.47
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.45
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.43
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.37
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.27
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.27
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.26
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.25
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.24
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.21
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.19
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.16
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.14
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.13
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.1
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.06
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.06
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.05
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.02
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.02
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.01
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.97
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.97
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.94
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.93
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.92
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.89
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.86
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.85
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.83
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.83
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.83
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.82
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.81
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.75
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.69
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	96.67
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.62
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.57
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.55
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.51
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.49
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.49
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.49
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.47
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.43
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.38
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.38
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.36
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.3
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.28
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	96.25
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.17
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.12
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.11
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.1
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.1
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.07
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.04
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.98
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.94
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.92
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	95.86
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.86
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.85
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.83
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.79
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.77
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.76
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.76
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.75
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.74
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.69
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	95.67
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.67
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.66
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.62
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.56
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	95.55
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.49
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.49
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.39
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.36
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.31
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.28
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.27
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.11
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.09
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.0
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	94.98
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	94.97
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.96
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.94
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.94
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.93
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.93
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.91
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.85
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.81
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	94.81
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.8
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	94.74
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.71
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	94.65
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.61
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.57
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.49
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	94.48
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.4
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	94.38
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.34
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.22
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.19
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	94.18
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	94.18
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.17
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.11
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	94.08
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.04
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.04
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.94
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.9
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.89
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	93.81
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.76
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.74
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.74
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	93.71
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.6
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.59
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.53
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.52
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	93.42
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.37
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.3
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	93.21
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	93.2
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.19
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.15
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.12
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	93.08
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.05
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	93.0
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	92.97
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.94
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	92.91
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.8
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.78
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	92.77
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	92.63
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.55
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.53
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	92.5
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	92.43
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.41
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	92.33
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	92.27
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.25
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.12
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	92.01
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.81
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	91.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	91.77
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	91.68
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	91.64
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.62
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	91.61
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	91.6
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.49
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	91.47
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	91.4
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	91.16
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.06
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	91.01
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	90.94
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.8
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.77
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	90.66
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.66
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	90.65
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	90.62
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	90.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	90.57
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	90.53
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.49
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.43
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.43
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	90.4
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	89.98
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.94
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	89.91
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	89.84
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	89.74
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	89.7
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.53
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	89.49
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	89.37
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.22
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	89.22
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	89.01
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	88.87
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.86
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.72
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	88.69
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	88.54
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	88.45
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	88.32
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	88.26
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	88.24
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	88.21
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.15
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	88.12
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	88.06
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.0
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.97
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	87.95
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	87.92
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	87.86
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.84
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	87.75
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	87.75
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	87.58
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	87.04
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	86.83
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	86.5
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	86.45
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.43
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	86.36
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	86.21
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	86.04
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	85.99
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.93
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	85.82
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	85.62
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.57
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	85.54
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	85.27
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	85.19
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	85.09
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.05
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	85.03
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.0
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	84.74
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	84.71
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.68
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	84.23
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	84.14
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	84.09
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	84.07
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.84
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	83.82
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	83.77
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	83.74
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	83.74
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	83.7
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	83.39
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	82.85
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	82.78
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	82.05
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	81.87
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	81.64
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	81.53
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	81.47
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.04
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	80.94
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	80.74
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	80.58
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	80.5
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.4
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	80.35
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	80.17
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	80.03

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=206.03  Aligned_cols=166  Identities=25%  Similarity=0.410  Sum_probs=142.7

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +|+++ ||+++++++|||+++.+.+++++|++|||+|++|++|++++|+||.+|++|+++++++++.++++ ++|+++++
T Consensus         1 ls~~~-AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~~Ga~~vi   78 (174)
T d1yb5a2           1 LDFKQ-GAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHEVF   78 (174)
T ss_dssp             SCHHH-HTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEE
T ss_pred             CCHHH-HHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccc-ccCccccc
Confidence            57889 89999999999999988899999999999999999999999999999999999999999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHC-CCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          216 NYNSEMSFDAALTKYF-PNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      |+++ .++.+.+++.+ ++++|++|||+|++.++.++++++++|+++.+|....         ...+...++.|++++.+
T Consensus        79 ~~~~-~~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~---------~~~~~~~~~~k~~~i~g  148 (174)
T d1yb5a2          79 NHRE-VNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGT---------IEINPRDTMAKESSIIG  148 (174)
T ss_dssp             ETTS-TTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCSC---------EEECTHHHHTTTCEEEE
T ss_pred             cccc-ccHHHHhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEecCCC---------CCCCHHHHHHCCCEEEE
Confidence            9988 78999999887 4589999999999999999999999999999986432         12345667889999999


Q ss_pred             EecccccchHHHHHHHHHHHHH
Q 042784          295 FMIGSHMDRFADFTVEMESYIK  316 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~  316 (356)
                      +.+.+..   ++.++++.++++
T Consensus       149 ~~~~~~~---~~~~~~~~~~l~  167 (174)
T d1yb5a2         149 VTLFSST---KEEFQQYAAALQ  167 (174)
T ss_dssp             CCGGGCC---HHHHHHHHHHHH
T ss_pred             EEecCCC---HHHHHHHHHHHH
Confidence            8765532   233444444443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=2.5e-29  Score=207.23  Aligned_cols=176  Identities=21%  Similarity=0.390  Sum_probs=151.5

Q ss_pred             cccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecC
Q 042784          139 PDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYN  218 (356)
Q Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~  218 (356)
                      +| ||+++++++|||+++.+.+++++|++|||+||+|++|++++|+|+..|++|+++++++++.+.++ ++|++++++++
T Consensus         1 ee-AA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~-~~Ga~~vi~~~   78 (183)
T d1pqwa_           1 NE-AATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-RLGVEYVGDSR   78 (183)
T ss_dssp             CH-HHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-TTCCSEEEETT
T ss_pred             Cc-hhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc-cccccccccCC
Confidence            35 79999999999999998999999999999999999999999999999999999999999999999 99999999998


Q ss_pred             ChhhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEec
Q 042784          219 SEMSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMI  297 (356)
Q Consensus       219 ~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (356)
                      + .++.+.+++.++ .|+|++|||+|++.++.++++++++|+++.+|......       ........+.+++++.++..
T Consensus        79 ~-~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~  150 (183)
T d1pqwa_          79 S-VDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYA-------DASLGLAALAKSASFSVVDL  150 (183)
T ss_dssp             C-STHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTT-------TCEEEGGGGTTTCEEEECCH
T ss_pred             c-cCHHHHHHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCC-------CcccchHHHhCCcEEEEEEc
Confidence            8 789999999985 59999999999999999999999999999998765421       11223344678899888876


Q ss_pred             cccc----chHHHHHHHHHHHHHcCCeeeee
Q 042784          298 GSHM----DRFADFTVEMESYIKEGKIRSKH  324 (356)
Q Consensus       298 ~~~~----~~~~~~l~~~~~~~~~g~i~~~~  324 (356)
                      ....    ...++.++++.+++.+|+++|.+
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         151 DLNLKLQPARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             cceeccCHHHHHHHHHHHHHHHHCCCCceeC
Confidence            5432    34457789999999999999853

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.96  E-value=4.2e-28  Score=199.40  Aligned_cols=174  Identities=39%  Similarity=0.674  Sum_probs=147.0

Q ss_pred             ccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChh
Q 042784          142 LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEM  221 (356)
Q Consensus       142 aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~  221 (356)
                      ++++.++++|||++|.+.+++++||+|||+||+|++|++++|+||..|++|+++++++++.++++ ++|+++++++++ .
T Consensus         7 l~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~-~~Ga~~vi~~~~-~   84 (182)
T d1v3va2           7 LGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKT-V   84 (182)
T ss_dssp             GTTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTS-C
T ss_pred             HHHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH-hhhhhhhccccc-c
Confidence            47888999999999999999999999999999999999999999999999999999999999999 999999999988 5


Q ss_pred             hHHHHHHHH-CCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEecccc
Q 042784          222 SFDAALTKY-FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGSH  300 (356)
Q Consensus       222 ~~~~~i~~~-~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (356)
                      ++.+.+.+. .++|+|+||||+|++.++.++++++++|+++.+|..+..+..... ....++..++.|++++.++.+.++
T Consensus        85 ~~~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~-~~~~~~~~l~~k~~ti~g~~~~~~  163 (182)
T d1v3va2          85 NSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQL-PPGPSPESIIYKQLRIEGFIVYRW  163 (182)
T ss_dssp             SCHHHHHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCGGGTTCTTSC-CBCCCHHHHHHTTCEEEECCGGGC
T ss_pred             cHHHHHHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecceeeccccccC-CCCcchHHHhhcCcEEEEEEEecc
Confidence            666655554 467999999999999999999999999999999976543211111 122355678899999999988776


Q ss_pred             cc-hHHHHHHHHHHHHHcC
Q 042784          301 MD-RFADFTVEMESYIKEG  318 (356)
Q Consensus       301 ~~-~~~~~l~~~~~~~~~g  318 (356)
                      .. .+++.++++++|+.+|
T Consensus       164 ~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         164 QGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             CHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHhCc
Confidence            53 4457789999999876

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.4e-28  Score=199.93  Aligned_cols=181  Identities=34%  Similarity=0.612  Sum_probs=146.4

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCC--CEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSG--SNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      +|+..  .+++++++|||+++.+.+++++|  ++|||+||+|++|++++|+||.+|+ +|++++.++++...+.+++|++
T Consensus         2 ~~~~~--galg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad   79 (187)
T d1vj1a2           2 LSYFL--GAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD   79 (187)
T ss_dssp             GGGGG--TTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS
T ss_pred             ccHHH--HHhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce
Confidence            56655  57899999999999999999987  8999999999999999999999999 6777777877776666589999


Q ss_pred             ceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccccccccccc--ccchhhhhhhhccce
Q 042784          213 DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTE--RDGVRNLLNMIGKEV  290 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~  290 (356)
                      +++||++ +++.+.+++.+++|+|+|||++|++.++.++++++++|+++.+|..++.....+.  +........+..|++
T Consensus        80 ~vi~~~~-~~~~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i  158 (187)
T d1vj1a2          80 AAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNI  158 (187)
T ss_dssp             EEEETTS-SCHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTC
T ss_pred             EEeeccc-hhHHHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcce
Confidence            9999998 8899999999988999999999999999999999999999999976542211111  111122334567899


Q ss_pred             EEEEEecccccchHHHHHHHHHHHHHcCC
Q 042784          291 KMEGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      ++.++.+.++.+.+++.++++.+|+.+|+
T Consensus       159 ~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         159 TRERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             EEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             EEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            99999888888888899999999999885

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=9.6e-29  Score=200.34  Aligned_cols=172  Identities=20%  Similarity=0.312  Sum_probs=136.6

Q ss_pred             CCccccccccCchhhhHHHHHH---HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIE---VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      +|+++ ||+++++++|||++++   +.++.++|++|||+||+|+||.+++|+||..|++|+++++++++.++++ ++|++
T Consensus         1 lS~~e-AAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~-~lGa~   78 (176)
T d1xa0a2           1 LTLKE-AMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VLGAK   78 (176)
T ss_dssp             CCHHH-HHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HTTCS
T ss_pred             CCHHH-HHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH-hcccc
Confidence            58899 8999999999997754   4588899999999999999999999999999999999999999999999 99999


Q ss_pred             ceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          213 DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      +++||+  ..+.+.++...++++|+|||++|++.+..++++|+++|+++.+|...+.       ....+...++.|++++
T Consensus        79 ~vi~~~--~~~~~~~~~~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g~-------~~~~~~~~~~~k~~~i  149 (176)
T d1xa0a2          79 EVLARE--DVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGA-------EVPTTVHPFILRGVSL  149 (176)
T ss_dssp             EEEECC-----------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSS-------CCCCCSHHHHHTTCEE
T ss_pred             eeeecc--hhHHHHHHHhhccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecccCc-------ccCCCHHHHHHCCcEE
Confidence            999987  4555555555577999999999999999999999999999999987652       2345777889999999


Q ss_pred             EEEecccccchHHHHHHHHHHHHHcCCeee
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIKEGKIRS  322 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~g~i~~  322 (356)
                      .|.+.....   .+...++.+.+ .+.++|
T Consensus       150 ~Gv~~~~~~---~~~~~~~~~~l-ag~lkP  175 (176)
T d1xa0a2         150 LGIDSVYCP---MDLRLRIWERL-AGDLKP  175 (176)
T ss_dssp             EECCSSSCC---HHHHHHHHHHH-HTTTCC
T ss_pred             EEEeCCcCC---HHHHHHHHHHH-hcccCC
Confidence            997543322   23334444444 366655

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.4e-28  Score=199.62  Aligned_cols=173  Identities=21%  Similarity=0.249  Sum_probs=142.1

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +|+++ ||+++++++|||++|.+.+++++||+|||+||+|++|++++|+||..|++|+++++++++.++++ ++|+++++
T Consensus         1 isfe~-AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~-~lGa~~vi   78 (179)
T d1qora2           1 ISFEQ-AAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVI   78 (179)
T ss_dssp             SCHHH-HHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEE
T ss_pred             CCHHH-HHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH-hcCCeEEE
Confidence            58899 89999999999999998899999999999999999999999999999999999999999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHCC-CCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEEE
Q 042784          216 NYNSEMSFDAALTKYFP-NGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKME  293 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  293 (356)
                      ||++ .++.++++++|+ +++|+++|++|++.+..++++++++|+++.++......       ...+...+. ...+.+.
T Consensus        79 ~~~~-~d~~~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~~  150 (179)
T d1qora2          79 NYRE-EDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAV-------TGVNLGILNQKGSLYVT  150 (179)
T ss_dssp             ETTT-SCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCCC-------CCBCTHHHHHTTSCEEE
T ss_pred             ECCC-CCHHHHHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeecccccCCc-------cccchhhhhccceEEEE
Confidence            9988 899999999984 58999999999999999999999999999988765522       111222222 2334444


Q ss_pred             EEecccc---cchHHHHHHHHHHHHHcC
Q 042784          294 GFMIGSH---MDRFADFTVEMESYIKEG  318 (356)
Q Consensus       294 ~~~~~~~---~~~~~~~l~~~~~~~~~g  318 (356)
                      ...+..+   .+...+.++++++++++|
T Consensus       151 ~~~l~~~~~~~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         151 RPSLQGYITTREELTEASNELFSLIASG  178 (179)
T ss_dssp             CCCHHHHCCSHHHHHHHHHHHHHHHHTT
T ss_pred             eeEEeeecCCHHHHHHHHHHHHHHHHCc
Confidence            3333222   234456677888888877

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.95  E-value=3.7e-27  Score=192.11  Aligned_cols=171  Identities=19%  Similarity=0.216  Sum_probs=148.4

Q ss_pred             CccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCcee
Q 042784          137 PFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       137 s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +++. ||+|+|++.|||+++.+.+++++|++|+|+|+ |++|++++|+||.+|+ +|++++.+++|+++++ ++|+++++
T Consensus         2 P~e~-aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~Ga~~~i   78 (174)
T d1f8fa2           2 PIEL-LGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLGATHVI   78 (174)
T ss_dssp             CGGG-TGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHTCSEEE
T ss_pred             CHHH-HHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHH-HcCCeEEE
Confidence            3556 79999999999999988899999999999997 9999999999999999 7778888999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          216 NYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      |+++ +++.+++++++++++|+||||+|.+ .++.++++++++|+++.+|......      ....+...++.+++++.+
T Consensus        79 ~~~~-~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~------~~~~~~~~~~~k~~~i~G  151 (174)
T d1f8fa2          79 NSKT-QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGT------TAQFDVNDLLLGGKTILG  151 (174)
T ss_dssp             ETTT-SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTC------CCCCCHHHHHHTTCEEEE
T ss_pred             eCCC-cCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCc------ccccCHHHHHHCCCEEEE
Confidence            9987 7899999999988999999999975 7899999999999999999754311      223466778899999999


Q ss_pred             EecccccchHHHHHHHHHHHHHcCC
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      +..++..  .+++++++++|+++|+
T Consensus       152 s~~g~~~--~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         152 VVEGSGS--PKKFIPELVRLYQQGK  174 (174)
T ss_dssp             CSGGGSC--HHHHHHHHHHHHHTTS
T ss_pred             EEecCCC--hHHHHHHHHHHHHcCC
Confidence            8766543  3467899999999885

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-27  Score=187.59  Aligned_cols=144  Identities=17%  Similarity=0.149  Sum_probs=122.9

Q ss_pred             eeeEEEecccCCCCCCCCCeEEE-EeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLR-SASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGI   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~   91 (356)
                      |||+++.++     ++|+.++++ +.+.    |+|+++||||||.+++||++|++.++|........+..+  |+|++|+
T Consensus         3 MkAv~~~~~-----G~p~~l~~~~~~~~----P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~--G~e~~G~   71 (150)
T d1yb5a1           3 MRAVRVFEF-----GGPEVLKLRSDIAV----PIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTP--GSDVAGV   71 (150)
T ss_dssp             EEEEEESSC-----SSGGGEEEEEEEEC----CCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCC--CSCEEEE
T ss_pred             eeEEEEEcc-----CCcceEEEEeecCC----CCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccC--ccceeee
Confidence            789999876     466888886 4555    788999999999999999999999997654433334444  4589999


Q ss_pred             EEEeccCCCCCCCCCEEEec---cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEE
Q 042784           92 ARVIRSKDSKYSDGDIVLRA---FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNV  168 (356)
Q Consensus        92 v~~vg~~v~~~~~Gd~V~~~---~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~V  168 (356)
                      |+++|+++++|++||||+..   +|+|+||+++++++++++   |+++|+++ ||+++++++|+|+++...+....|+++
T Consensus        72 V~~vG~~v~~~~vGdrV~~~~~~~G~~ae~~~v~~~~~~~i---P~~ls~~~-Aa~~~~~~~ta~~~~~~~g~~~~G~~v  147 (150)
T d1yb5a1          72 IEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKL---PEKLKPVI-GSQYPLEKVAEAHENIIHGSGATGKMI  147 (150)
T ss_dssp             EEEECTTCTTCCTTCEEEESCCSSCSSBSEEEEEGGGEEEC---CTTCCCCE-EEEEEGGGHHHHHHHHHHSSCCSSEEE
T ss_pred             eEeecceeeccccCccccccccccccccccccccccccccc---cCCCCHHH-HHHhhhhhhhehhhheEEcCcccCCEE
Confidence            99999999999999999832   389999999999998665   99999999 899999999999999889999999999


Q ss_pred             EEE
Q 042784          169 FVS  171 (356)
Q Consensus       169 lV~  171 (356)
                      ||+
T Consensus       148 liL  150 (150)
T d1yb5a1         148 LLL  150 (150)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=1.7e-26  Score=187.69  Aligned_cols=167  Identities=17%  Similarity=0.269  Sum_probs=145.5

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCce
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDA  214 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v  214 (356)
                      +|+.+ ||+++|+++|||+++. ..++++|++|+|+|++|++|++++++++..|+ +|++++.++++.++++ ++|++++
T Consensus         1 l~~~e-AA~l~c~~~Ta~~al~-~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~Ga~~~   77 (170)
T d1jvba2           1 LNAVE-AAPLTCSGITTYRAVR-KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYV   77 (170)
T ss_dssp             SCHHH-HGGGGTHHHHHHHHHH-HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEE
T ss_pred             CCHHH-HHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-HcCCcee
Confidence            46778 8999999999999996 58899999999999889999999999999997 9999999999999999 9999999


Q ss_pred             eecCChhhHHHHHHHHC-CCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          215 FNYNSEMSFDAALTKYF-PNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       215 ~~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      +++++ .++.+++++.+ ++++|++|||+|++ .++.++++++++|+++.+|....        ....+...++.|++++
T Consensus        78 i~~~~-~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~--------~~~~~~~~~~~k~i~i  148 (170)
T d1jvba2          78 INASM-QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGA--------DLHYHAPLITLSEIQF  148 (170)
T ss_dssp             EETTT-SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCC--------CCCCCHHHHHHHTCEE
T ss_pred             eccCC-cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccC--------ccccCHHHHHhCCcEE
Confidence            99887 77888888887 55899999999985 78999999999999999997654        1334566678899999


Q ss_pred             EEEecccccchHHHHHHHHHHHHHcCC
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      .++..++.     ++++++++++++|+
T Consensus       149 ~Gs~~~~~-----~d~~~~l~lv~~GK  170 (170)
T d1jvba2         149 VGSLVGNQ-----SDFLGIMRLAEAGK  170 (170)
T ss_dssp             EECCSCCH-----HHHHHHHHHHHTTS
T ss_pred             EEEecCCH-----HHHHHHHHHHHcCC
Confidence            99876643     66888999999885

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=6.2e-27  Score=190.08  Aligned_cols=162  Identities=20%  Similarity=0.325  Sum_probs=129.4

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +|+++ ||+++++++|||+++. .+++++|++|||+|++|++|++++|+||..|++|+++++++++.+.++ ++|+++++
T Consensus         1 ls~ee-AA~l~~~~~TA~~al~-~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~-~lGa~~~i   77 (171)
T d1iz0a2           1 LSPEE-AAAFPVSFLTAYLALK-RAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAA   77 (171)
T ss_dssp             CCHHH-HHTSHHHHHHHHHHHH-HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEEE
T ss_pred             CCHHH-HHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc-ccccceee
Confidence            57888 8999999999999997 589999999999999999999999999999999999999999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEE
Q 042784          216 NYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGF  295 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      ||.+   ....+..  ++|+|+||||+| +.++.++++++++|+++.+|...+.       ....+...++.|++++.++
T Consensus        78 ~~~~---~~~~~~~--~~g~D~v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g~-------~~~~~~~~~~~k~~~i~g~  144 (171)
T d1iz0a2          78 TYAE---VPERAKA--WGGLDLVLEVRG-KEVEESLGLLAHGGRLVYIGAAEGE-------VAPIPPLRLMRRNLAVLGF  144 (171)
T ss_dssp             EGGG---HHHHHHH--TTSEEEEEECSC-TTHHHHHTTEEEEEEEEEC--------------CCCCTTHHHHTTCEEEEC
T ss_pred             ehhh---hhhhhhc--cccccccccccc-hhHHHHHHHHhcCCcEEEEeCCCCC-------CCCccHHHHHHCCcEEEEE
Confidence            9863   3333322  468999999988 5789999999999999999976542       1234566778999999999


Q ss_pred             ecccccchHHHHHHHHHHH
Q 042784          296 MIGSHMDRFADFTVEMESY  314 (356)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~~  314 (356)
                      .+.++.+ .++.+++....
T Consensus       145 ~~~~~~~-~~~~~~~~~~~  162 (171)
T d1iz0a2         145 WLTPLLR-EGALVEEALGF  162 (171)
T ss_dssp             CHHHHTT-CHHHHHHHHHH
T ss_pred             eCcChhh-hHHHHHHHHHH
Confidence            8766543 23444444443

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.94  E-value=1.4e-26  Score=191.18  Aligned_cols=175  Identities=17%  Similarity=0.262  Sum_probs=141.6

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEE-cCCChHHHHHHHHHHHCCCEEEEEeCCh----HHHHHHHHHhC
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVS-AAAGGVGMFAGQLAKLKGCKVVGSTGSD----DNVKLLKEEFG  210 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~-g~~g~vG~~~i~la~~~G~~V~~~~~s~----~~~~~~~~~~g  210 (356)
                      +|+++ ||+++++++|||+++.+.+++++|++|+|+ ||+|++|++++|+||.+|++|++++++.    ++.+.++ ++|
T Consensus         1 ls~~~-AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~-~lG   78 (189)
T d1gu7a2           1 LTINQ-GATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-ELG   78 (189)
T ss_dssp             CCHHH-HHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH-HHT
T ss_pred             CCHHH-HHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhh-hcc
Confidence            57889 899999999999999988999999998886 7789999999999999999999987554    3455677 899


Q ss_pred             CCceeecCCh--hhHHHHHHHH---CCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhh
Q 042784          211 YDDAFNYNSE--MSFDAALTKY---FPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNM  285 (356)
Q Consensus       211 ~~~v~~~~~~--~~~~~~i~~~---~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  285 (356)
                      +++++++++.  .++.+.++++   .++++|++|||+|++.+..++++|+++|+++.+|..++.       ....+...+
T Consensus        79 ad~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~~-------~~~~~~~~l  151 (189)
T d1gu7a2          79 ATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQ-------PVTIPTSLY  151 (189)
T ss_dssp             CSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSC-------CEEECHHHH
T ss_pred             ccEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCccCC-------CccCcHHHH
Confidence            9999998531  3344455544   366899999999999999999999999999999976542       123456667


Q ss_pred             hccceEEEEEecccccc----hHHHHHHHHHHHHHcCC
Q 042784          286 IGKEVKMEGFMIGSHMD----RFADFTVEMESYIKEGK  319 (356)
Q Consensus       286 ~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~g~  319 (356)
                      +.|++++.++.+.++.+    ...+.++++++++++|+
T Consensus       152 ~~k~~~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         152 IFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             HHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHCCcEEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            88999999987765433    33467888889988875

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.94  E-value=5e-27  Score=191.97  Aligned_cols=136  Identities=12%  Similarity=0.052  Sum_probs=116.9

Q ss_pred             CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCCCEEE
Q 042784           30 DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDGDIVL  109 (356)
Q Consensus        30 ~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~Gd~V~  109 (356)
                      ++|+++++++    |+|+++||||||++++||++|++.+.|........+.+...|+|++|+|+++|+++++|++||||+
T Consensus        11 ~~l~~~e~~~----P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~GdrV~   86 (178)
T d1e3ja1          11 NDLRLEQRPI----PEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVA   86 (178)
T ss_dssp             TEEEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEE
T ss_pred             CcEEEEEeEC----CCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCCCCEEE
Confidence            6799999876    789999999999999999999999886554444444444555699999999999999999999997


Q ss_pred             ec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHh
Q 042784          110 RA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVL  159 (356)
Q Consensus       110 ~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~  159 (356)
                      +.                              .|+|+||+++++++++++   |+++|+++ +|++++++.|||+++. .
T Consensus        87 ~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~i---P~~~~~~~-aa~~~~~~~ta~~a~~-~  161 (178)
T d1e3ja1          87 VEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKL---PDNCNVKQ-LVTHSFKLEQTVDAFE-A  161 (178)
T ss_dssp             ECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEEC---CTTCCCGG-GEEEEEEGGGHHHHHH-H
T ss_pred             ECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeC---CCCCCHHH-HHHHHhHHHHHHHHHH-H
Confidence            31                              279999999999888555   99999999 7899999999999985 6


Q ss_pred             CCCCCCCEEEEEcCC
Q 042784          160 GQPKSGSNVFVSAAA  174 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~  174 (356)
                      +++++|++|+|+||+
T Consensus       162 ~~~~~g~~VlVig~C  176 (178)
T d1e3ja1         162 ARKKADNTIKVMISC  176 (178)
T ss_dssp             HHHCCTTCSEEEEEC
T ss_pred             hCCCCCCEEEEEccc
Confidence            889999999999975

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=8.2e-26  Score=183.61  Aligned_cols=171  Identities=19%  Similarity=0.199  Sum_probs=139.3

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCce
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDA  214 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v  214 (356)
                      +|+|+ |+.+++++.|||+++. .+++++|++|+|+|+ |++|++++|+||.+|+ +|++++.+++|++.++ ++|++++
T Consensus         1 ip~e~-A~~l~~~~~ta~~a~~-~a~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~lGa~~~   76 (174)
T d1jqba2           1 MPLEN-AVMITDMMTTGFHGAE-LADIEMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FYGATDI   76 (174)
T ss_dssp             SCHHH-HHTTTTHHHHHHHHHH-HTTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HHTCSEE
T ss_pred             CCHHH-HHHhhhHHHHHHHHHH-HhCCCCCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hhCcccc
Confidence            46788 7788999999999985 689999999999986 9999999999999999 8999999999999999 9999999


Q ss_pred             eecCChhhHHHHHHHHCC-CCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          215 FNYNSEMSFDAALTKYFP-NGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       215 ~~~~~~~~~~~~i~~~~~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      +|+++ .++.+.++++++ .|+|+||||+|.+ .+++++++++++|+++.+|........    ......+..+.++.++
T Consensus        77 i~~~~-~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~----~~~~~~~~~~~~~~~i  151 (174)
T d1jqba2          77 LNYKN-GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDAL----LIPRVEWGCGMAHKTI  151 (174)
T ss_dssp             ECGGG-SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEE----EEETTTTGGGTBCCEE
T ss_pred             ccccc-hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcC----cCcHhHHHHHhCccEE
Confidence            99987 788899999985 5899999999975 789999999999999999976542210    1111223344567788


Q ss_pred             EEEecccccchHHHHHHHHHHHHHcCC
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      .+......    +...+++.+++..|+
T Consensus       152 ~g~~~~~~----r~~~e~l~~li~~gk  174 (174)
T d1jqba2         152 KGGLCPGG----RLRAERLRDMVVYNR  174 (174)
T ss_dssp             EEBCCCCH----HHHHHHHHHHHHTTS
T ss_pred             EEecCCCC----cccHHHHHHHHHcCC
Confidence            77655442    244677888888775

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=6.6e-26  Score=183.41  Aligned_cols=165  Identities=19%  Similarity=0.300  Sum_probs=139.4

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +|+++ ||+|+|+++|||++++ .+++++|++|+|.|+ |++|++++|+||.+|++|++++++++++++++ ++|+++++
T Consensus         1 v~f~~-aA~l~ca~~Ta~~al~-~~~~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~-~~Ga~~~i   76 (166)
T d1llua2           1 VEFAE-IAPILCAGVTVYKGLK-QTNARPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELAR-KLGASLTV   76 (166)
T ss_dssp             SCHHH-HGGGGTHHHHHHHHHH-HHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEE
T ss_pred             CCHHH-HHHHHHHHHHHHHHHH-HhCCCCCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhh-ccCccccc
Confidence            47888 8999999999999996 588999999999996 99999999999999999999999999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEE
Q 042784          216 NYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGF  295 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      |+++ .++.+.+.+.+++..++++++.+.+.++.++++++++|+++.+|....        ....+...++.|++++.++
T Consensus        77 ~~~~-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~--------~~~~~~~~~~~k~~~i~Gs  147 (166)
T d1llua2          77 NARQ-EDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPG--------DFPTPIFDVVLKGLHIAGS  147 (166)
T ss_dssp             ETTT-SCHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSS--------EEEEEHHHHHHTTCEEEEC
T ss_pred             cccc-hhHHHHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEecCC--------CccCCHHHHHhCCcEEEEE
Confidence            9987 677777777665545555555556799999999999999999997544        1234667788899999998


Q ss_pred             ecccccchHHHHHHHHHHHHHcC
Q 042784          296 MIGSHMDRFADFTVEMESYIKEG  318 (356)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~g  318 (356)
                      ..++.     +.++++++++.+|
T Consensus       148 ~~~~~-----~d~~e~l~l~~~G  165 (166)
T d1llua2         148 IVGTR-----ADLQEALDFAGEG  165 (166)
T ss_dssp             CSCCH-----HHHHHHHHHHHTT
T ss_pred             eecCH-----HHHHHHHHHHHCc
Confidence            76542     5578889998887

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.7e-25  Score=182.33  Aligned_cols=143  Identities=15%  Similarity=-0.010  Sum_probs=119.2

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +.+|||+++.+++       ++++++++++    |.|+++||||||.+++||++|++.++|.+......|+.+||  |++
T Consensus         3 P~tMkA~v~~~~g-------~pl~l~evp~----P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~Gh--E~~   69 (175)
T d1llua1           3 PQTMKAAVVHAYG-------APLRIEEVKV----PLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGH--EGV   69 (175)
T ss_dssp             CSEEEEEEBCSTT-------SCCEEEEEEC----CCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCS--CEE
T ss_pred             chhcEEEEEEeCC-------CCCEEEEeEC----CCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCC--cce
Confidence            4679999998764       4689999877    78999999999999999999999999865444444555555  999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCcc
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFP  139 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~  139 (356)
                      |+|+++|++++.+++||||++.                              .|+|+||+++++++++++   |+++|++
T Consensus        70 G~V~~~G~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~i---Pd~l~~~  146 (175)
T d1llua1          70 GYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGIL---PKNVKAT  146 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEEC---CTTCCCC
T ss_pred             EEEEEeCCCccccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEEC---CCCCChh
Confidence            9999999999999999999841                              268999999999988555   9999998


Q ss_pred             ccccccCchhhhHHHHHHHhCCCCCCCEEEEE
Q 042784          140 DYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVS  171 (356)
Q Consensus       140 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~  171 (356)
                      . ++++.+++.|++++++ .+. .+|++|||.
T Consensus       147 ~-a~~~~~~~~t~~~~~~-~g~-~~G~~VLVl  175 (175)
T d1llua1         147 I-HPGKLDDINQILDQMR-AGQ-IEGRIVLEM  175 (175)
T ss_dssp             E-EEECGGGHHHHHHHHH-TTC-CSSEEEEEC
T ss_pred             H-HHHHHhHHHHHHHHHH-hCC-CCCCEEEeC
Confidence            8 6778889999998885 454 469999984

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.93  E-value=2e-25  Score=181.08  Aligned_cols=169  Identities=18%  Similarity=0.177  Sum_probs=135.7

Q ss_pred             CccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCcee
Q 042784          137 PFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       137 s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      ++++ ||.|.|++.|+|+++.+.+++++|++|+|+|+ |++|++++|++|..|+ +|++++.+++|+++++ ++|+++++
T Consensus         2 ~Le~-aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~-~~Ga~~~i   78 (174)
T d1e3ia2           2 NLER-VCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-ALGATDCL   78 (174)
T ss_dssp             CHHH-HGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEE
T ss_pred             CHHH-HHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHH-HhCCCccc
Confidence            4566 89999999999999988899999999999986 9999999999999999 8999999999999999 99999999


Q ss_pred             ecCChhhH-HHHHHHHCCCCceEEEECCchh-hHHHHHHhcccC-CEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          216 NYNSEMSF-DAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVH-ARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       216 ~~~~~~~~-~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      ++...++. ....+...++|+|++|||+|.+ .+++++++++++ |+++.+|.....        ...+...++ .+.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~--------~~i~~~~~~-~~k~i  149 (174)
T d1e3ia2          79 NPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDE--------MTIPTVDVI-LGRSI  149 (174)
T ss_dssp             CGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSE--------EEEEHHHHH-TTCEE
T ss_pred             CCccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCc--------cccchHHHh-ccCEE
Confidence            87642333 3344444578999999999985 899999999996 999999986542        112223332 24577


Q ss_pred             EEEecccccchHHHHHHHHHHHHHcCC
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      .++..+++.  ..+.+.++++++++|+
T Consensus       150 ~Gs~~Gs~~--~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         150 NGTFFGGWK--SVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             EECSGGGCC--HHHHHHHHHHHHHTTS
T ss_pred             EEEEeeCCC--hHHHHHHHHHHHHCcC
Confidence            887776653  3467788888888875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=3.6e-25  Score=181.74  Aligned_cols=165  Identities=19%  Similarity=0.238  Sum_probs=135.5

Q ss_pred             ccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCCh
Q 042784          142 LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSE  220 (356)
Q Consensus       142 aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~  220 (356)
                      +|++.|+++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++ ++|+++++|+++.
T Consensus         6 ~a~~~c~~~ta~~al~~~~~~~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~   83 (182)
T d1vj0a2           6 LAMAMCSGATAYHAFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EIGADLTLNRRET   83 (182)
T ss_dssp             HHHHTTHHHHHHHHHHTCSSCCBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HTTCSEEEETTTS
T ss_pred             HHHhhcHHHHHHHHHHHHhCCCCCCEEEEECC-Cccchhheecccccccccccccccccccccccc-cccceEEEecccc
Confidence            68999999999999988899999999999997 9999999999999999 8999999999999999 9999999998762


Q ss_pred             --hhHHHHHHHHC-CCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEe
Q 042784          221 --MSFDAALTKYF-PNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFM  296 (356)
Q Consensus       221 --~~~~~~i~~~~-~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (356)
                        .++.+.+.+++ +.|+|+||||+|.+ .++.++++++++|+++.+|...+..     +........++.|++++.|+.
T Consensus        84 ~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~l~~k~l~i~G~~  158 (182)
T d1vj0a2          84 SVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQD-----PVPFKVYEWLVLKNATFKGIW  158 (182)
T ss_dssp             CHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCC-----CEEECHHHHTTTTTCEEEECC
T ss_pred             chHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCC-----ccccccHHHHHHCCcEEEEEE
Confidence              23455677777 45899999999985 7899999999999999999755421     112223345678999999987


Q ss_pred             cccccchHHHHHHHHHHHHHcC
Q 042784          297 IGSHMDRFADFTVEMESYIKEG  318 (356)
Q Consensus       297 ~~~~~~~~~~~l~~~~~~~~~g  318 (356)
                      .++.     +.+++++++++++
T Consensus       159 ~~~~-----~~~~~~~~~i~~~  175 (182)
T d1vj0a2         159 VSDT-----SHFVKTVSITSRN  175 (182)
T ss_dssp             CCCH-----HHHHHHHHHHHTC
T ss_pred             eCCH-----HHHHHHHHHHHHC
Confidence            6643     4456666776654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=1.5e-25  Score=181.80  Aligned_cols=168  Identities=20%  Similarity=0.278  Sum_probs=144.3

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +|+++ ||+++++++|||++++ ..++++|++|+|+|+ |++|++++++++..|++|++++.+++|.++++ ++|++.++
T Consensus         1 ls~ee-AA~l~~~~~Ta~~al~-~~~~~~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k-~~Ga~~~~   76 (168)
T d1rjwa2           1 LSFEE-AAPIFCAGVTTYKALK-VTGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVV   76 (168)
T ss_dssp             SCHHH-HGGGGTHHHHHHHHHH-HHTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSEEE
T ss_pred             CCHHH-HHHHHHHHHHHHHHHH-HhCCCCCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhhh-hcCcceec
Confidence            58899 8999999999999997 578999999999986 99999999999999999999999999999999 89999999


Q ss_pred             ecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEE
Q 042784          216 NYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGF  295 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      ++.+ .++.+.+++.+.+..|+++|+.+...++.++++++++|+++.+|.....        ...+...++.+++++.++
T Consensus        77 ~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~--------~~~~~~~~~~~~~~i~gs  147 (168)
T d1rjwa2          77 NPLK-EDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEE--------MPIPIFDTVLNGIKIIGS  147 (168)
T ss_dssp             CTTT-SCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSE--------EEEEHHHHHHTTCEEEEC
T ss_pred             cccc-chhhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccccCC--------CCCCHHHHHHCCcEEEEE
Confidence            9988 7888888888866666666655667899999999999999999976541        234566778899999987


Q ss_pred             ecccccchHHHHHHHHHHHHHcCCee
Q 042784          296 MIGSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      ..++     .+.++++++++++|+++
T Consensus       148 ~~~~-----~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         148 IVGT-----RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             CSCC-----HHHHHHHHHHHHTTSCC
T ss_pred             eeCC-----HHHHHHHHHHHHhCCCC
Confidence            6553     35688999999999875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.93  E-value=4e-25  Score=179.68  Aligned_cols=163  Identities=21%  Similarity=0.298  Sum_probs=137.4

Q ss_pred             ccccccccCchhhhHHHHHHHhC-CCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCcee
Q 042784          138 FPDYLSSLGIPGFAAWVGIEVLG-QPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       138 ~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +.+ +|+|+++++|||+++.+.. .+++|++|+|+|+ |++|++++|+++.+|+ +|++++.+++|+++++ ++|+++++
T Consensus         6 l~e-aA~l~~~~~Ta~~al~~~~~~~~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~-~~ga~~~i   82 (172)
T d1h2ba2           6 LVE-MAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RLGADHVV   82 (172)
T ss_dssp             HHH-TGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HTTCSEEE
T ss_pred             HHH-HhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHh-hcccceee
Confidence            446 7999999999999998765 5899999999996 9999999999999998 8888999999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHC-CCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEE
Q 042784          216 NYNSEMSFDAALTKYF-PNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKME  293 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (356)
                      ++++ + ..+.+.+.+ +.++|+||||+|+. .++.++++++++|+++.+|....         ...+...++.|++++.
T Consensus        83 ~~~~-~-~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~---------~~~~~~~l~~k~~~i~  151 (172)
T d1h2ba2          83 DARR-D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGE---------LRFPTIRVISSEVSFE  151 (172)
T ss_dssp             ETTS-C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSSC---------CCCCHHHHHHTTCEEE
T ss_pred             cCcc-c-HHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCccc---------ccCCHHHHHhCCcEEE
Confidence            9985 3 444455555 56899999999986 79999999999999999996322         2245667788999999


Q ss_pred             EEecccccchHHHHHHHHHHHHHcCC
Q 042784          294 GFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      |+..++.     +.++++++|+.+|+
T Consensus       152 Gs~~~~~-----~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         152 GSLVGNY-----VELHELVTLALQGK  172 (172)
T ss_dssp             ECCSCCH-----HHHHHHHHHHHTTS
T ss_pred             EEEecCH-----HHHHHHHHHHHcCC
Confidence            9877653     45788999999885

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=1.5e-25  Score=178.09  Aligned_cols=144  Identities=17%  Similarity=0.186  Sum_probs=117.0

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      |++||||++..++     .+..++++++++    |+|+++||||||.++|||++|++...|........++  ..++|++
T Consensus         1 m~~~KA~v~~~~~-----~~~~~~i~~v~~----P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~--v~g~e~~   69 (152)
T d1xa0a1           1 MSAFQAFVVNKTE-----TEFTAGVQTISM----DDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPF--VPGIDLA   69 (152)
T ss_dssp             CCEEEEEEEEEET-----TEEEEEEEEEEG----GGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSB--CCCSEEE
T ss_pred             CCceEEEEEEecC-----CceEEEEEEccC----CCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccc--eeeeeee
Confidence            6789999999864     334567888877    7889999999999999999999988875433333444  4455888


Q ss_pred             EEEEEeccCCCCCCCCCEEEec--------cCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCC
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA--------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQ  161 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~--------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~  161 (356)
                      |+|.+  .++..+++||+|+..        +|+|+||++++++.++++   |+++|. + ||+++++++|||.++...++
T Consensus        70 G~v~~--~~~~~~~~g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~i---P~~l~~-~-aa~l~~a~~ta~~~~~~~~~  142 (152)
T d1xa0a1          70 GVVVS--SQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPL---PKGLER-I-AQEISLAELPQALKRILRGE  142 (152)
T ss_dssp             EEEEE--CCSSSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEEC---CTTHHH-H-EEEEEGGGHHHHHHHHHHTC
T ss_pred             eeeec--cCCCccccCCEEEEecCccccccCCCcceeeeehhhccccC---CCCCCH-H-HHHHHHHHHHHHHHHHHhcC
Confidence            88877  566789999999831        389999999999998665   999984 6 68999999999999988888


Q ss_pred             CCCCCEEEEEc
Q 042784          162 PKSGSNVFVSA  172 (356)
Q Consensus       162 ~~~g~~VlV~g  172 (356)
                      ++ |++|||+|
T Consensus       143 ~~-G~tVL~l~  152 (152)
T d1xa0a1         143 LR-GRTVVRLA  152 (152)
T ss_dssp             CC-SEEEEECC
T ss_pred             CC-CCEEEEcC
Confidence            86 99999975

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.92  E-value=9.1e-25  Score=178.46  Aligned_cols=172  Identities=17%  Similarity=0.199  Sum_probs=138.3

Q ss_pred             CccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCcee
Q 042784          137 PFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       137 s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      ++++ ||.++|++.|||+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|++++++++++++++ +||+++++
T Consensus         2 P~e~-aa~l~ca~~Tay~al~~~~~~~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak-~lGa~~~i   78 (176)
T d2fzwa2           2 PLDK-VCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFGATECI   78 (176)
T ss_dssp             CHHH-HGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHTCSEEE
T ss_pred             CHHH-HhHhhcHHHHHHHHHHHhhCCCCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH-HhCCcEEE
Confidence            3567 89999999999999988899999999999997 8999999999999998 8999998999999999 99999999


Q ss_pred             ecCCh-hhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEE
Q 042784          216 NYNSE-MSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKME  293 (356)
Q Consensus       216 ~~~~~-~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (356)
                      |+.+. .+..+.+++.+++++|+|||++|.. .+..+..+++++|+++.++......     . ........+.++.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~-----~-~~~~~~~~~~~~~~i~  152 (176)
T d2fzwa2          79 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASG-----E-EIATRPFQLVTGRTWK  152 (176)
T ss_dssp             CGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTT-----C-CEEECTHHHHTTCEEE
T ss_pred             eCCchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeecccc-----c-cccccHHHHHCCCEEE
Confidence            98642 4466667777788999999999985 6788889999998887775544311     1 1122233345778999


Q ss_pred             EEecccccchHHHHHHHHHHHHHcCC
Q 042784          294 GFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      ++..++...  .+.+.++++++++|+
T Consensus       153 Gs~~G~~~~--~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         153 GTAFGGWKS--VESVPKLVSEYMSKK  176 (176)
T ss_dssp             ECSGGGCCH--HHHHHHHHHHHHTTS
T ss_pred             EEeeeCCcH--HHHHHHHHHHHHcCC
Confidence            987776532  456888899998875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-25  Score=182.03  Aligned_cols=163  Identities=15%  Similarity=0.129  Sum_probs=136.0

Q ss_pred             ccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeec
Q 042784          138 FPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNY  217 (356)
Q Consensus       138 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~  217 (356)
                      .+. ||++.|++.|||+++. .+++++|++|+|+|+ |++|++++|+||.+|++|++++++++|.++++ ++|+++++++
T Consensus         3 ~e~-AApl~cag~Ta~~al~-~~~~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~-~lGa~~~i~~   78 (168)
T d1piwa2           3 SHL-AAPLLCGGLTVYSPLV-RNGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KMGADHYIAT   78 (168)
T ss_dssp             HHH-HGGGGTHHHHHHHHHH-HTTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEEEG
T ss_pred             HHH-HHHHHHHHHHHHHHHH-HhCcCCCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhh-ccCCcEEeec
Confidence            455 7899999999999997 588999999999997 99999999999999999999999999999999 9999999998


Q ss_pred             CChhhHHHHHHHHCCCCceEEEECCchh---hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          218 NSEMSFDAALTKYFPNGIDVYLDNVGGK---MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       218 ~~~~~~~~~i~~~~~~~~d~vld~~g~~---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      .+..++.+    ...+++|.++||++..   .++.++++++++|+++.+|.....        ...+...++.|++++.+
T Consensus        79 ~~~~~~~~----~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~--------~~~~~~~~~~k~~~i~G  146 (168)
T d1piwa2          79 LEEGDWGE----KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQH--------EMLSLKPYGLKAVSISY  146 (168)
T ss_dssp             GGTSCHHH----HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSS--------CCEEECGGGCBSCEEEE
T ss_pred             cchHHHHH----hhhcccceEEEEecCCccchHHHHHHHhhccceEEEecccccc--------ccccHHHHHhCCcEEEE
Confidence            75334433    2335799999998864   478899999999999999975541        22355567889999999


Q ss_pred             EecccccchHHHHHHHHHHHHHcCCee
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      +..++.     +.++++++++.+|+|+
T Consensus       147 s~~g~~-----~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         147 SALGSI-----KELNQLLKLVSEKDIK  168 (168)
T ss_dssp             CCCCCH-----HHHHHHHHHHHHTTCC
T ss_pred             EeeCCH-----HHHHHHHHHHHhCCCC
Confidence            876653     5688999999999875

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.3e-25  Score=173.44  Aligned_cols=134  Identities=15%  Similarity=0.062  Sum_probs=110.9

Q ss_pred             CCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEEEEeccCCCCCCCC
Q 042784           26 VPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIARVIRSKDSKYSDG  105 (356)
Q Consensus        26 ~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v~~vg~~v~~~~~G  105 (356)
                      +++|+.|++++.++    |.|+++||+|||.+++||++|++++.|.+.   ..++|...|+|++|+|+++|+++++|++|
T Consensus         9 ~G~pe~l~~~e~~~----P~p~~~eVlVkv~a~~in~~D~~~~~G~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           9 HGGPEVLQAVEFTP----ADPAENEIQVENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             CCSGGGCEEEECCC----CCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             cCCCceeEEEEecC----CCCCCCEEEEEEEEecccceeeeeecCCCC---CCcceeeeccccccceeeeeeeccccccc
Confidence            46778999999866    789999999999999999999999998543   23455555569999999999999999999


Q ss_pred             CEEEe---ccCCeeeEEeecCCcccccCCCCCCCCcccc-ccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784          106 DIVLR---AFLPVAEYSLLPCDLLTRKLDPASGIPFPDY-LSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus       106 d~V~~---~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      |||+.   ..|+|+||++++.+.++.+   |++++++++ +++++....++++++.+ .++++|++|||
T Consensus        82 drV~~~~~~~G~~ae~~~v~~~~~~~~---P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1          82 DRVVYAQSALGAYSSVHNIIADKAAIL---PAAIKVDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CEEEESCCSSCCSBSEEEEEGGGEEEC---CTTSCCCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             ceeeeeccccccceeEEEEehHHeEEc---CcccchHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            99973   4589999999999988655   888887651 34566777888888864 67999999998

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.92  E-value=1.5e-24  Score=176.10  Aligned_cols=168  Identities=15%  Similarity=0.156  Sum_probs=135.3

Q ss_pred             cccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeec
Q 042784          139 PDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNY  217 (356)
Q Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~  217 (356)
                      .+ ||.|.|++.|||+++.+.+++++|++|+|+|+ |++|++++|+||++|+ +|++++.+++|+++++ ++|+++++|+
T Consensus         3 ~e-aa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~-~lGa~~~i~~   79 (174)
T d1p0fa2           3 LE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-ELGATECLNP   79 (174)
T ss_dssp             GG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HTTCSEEECG
T ss_pred             HH-HHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHH-HcCCcEEEcC
Confidence            35 79999999999999988899999999999996 9999999999999998 8999999999999999 9999999998


Q ss_pred             CChhh-HHHHHHHHCCCCceEEEECCchh-hHHHHHHhccc-CCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          218 NSEMS-FDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNV-HARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       218 ~~~~~-~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      ++.++ +.+..+..+++++|++||++|.. .++.++..+++ +|+++.+|......      ....+... +.++.++.|
T Consensus        80 ~~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~------~~~~~~~~-~~~~~~i~G  152 (174)
T d1p0fa2          80 KDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNE------RLPLDPLL-LLTGRSLKG  152 (174)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTC------CEEECTHH-HHTTCEEEE
T ss_pred             CCchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCcc------ccccCHHH-HhCCCEEEE
Confidence            75333 55555666778999999999985 77888888866 59999999865421      11122222 346779999


Q ss_pred             EecccccchHHHHHHHHHHHHHcCC
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      +.+++..   ++++.++++++.+|+
T Consensus       153 s~~G~~~---~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         153 SVFGGFK---GEEVSRLVDDYMKKK  174 (174)
T ss_dssp             CSGGGCC---GGGHHHHHHHHHTTS
T ss_pred             EEeCCCC---HHHHHHHHHHHHcCC
Confidence            8777643   235788888888875

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.92  E-value=5e-25  Score=182.89  Aligned_cols=143  Identities=10%  Similarity=0.090  Sum_probs=121.8

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      +++||+++.+.+       .+++++++++    |+|+++||||||.++|||++|++.+.|....   .+++...++|++|
T Consensus         7 ~~~kAav~~~~~-------~pl~i~ev~~----P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~---~~~p~i~GhE~~G   72 (199)
T d1cdoa1           7 IKCKAAVAWEAN-------KPLVIEEIEV----DVPHANEIRIKIIATGVCHTDLYHLFEGKHK---DGFPVVLGHEGAG   72 (199)
T ss_dssp             EEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHHTTCCT---TSCSEECCCCEEE
T ss_pred             eEEEEEEEecCC-------CCcEEEEEEC----CCCCCCEEEEEEEEEEEecchhhhhhhcccc---cccccccccccce
Confidence            457888887654       6799999977    7889999999999999999999999874432   3344444559999


Q ss_pred             EEEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEe
Q 042784           91 IARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSL  120 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~  120 (356)
                      +|+++|+++.++++||||++.                                                  .|+||||++
T Consensus        73 ~v~~vG~~v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~  152 (199)
T d1cdoa1          73 IVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTV  152 (199)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEE
T ss_pred             EEEEEcCCCceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEE
Confidence            999999999999999999841                                                  278999999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEE
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVS  171 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~  171 (356)
                      +++.+++++   |+++++++ +|++.+++.|+++++......+.|++|||.
T Consensus       153 v~~~~~~~i---P~~~~~~~-aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         153 VNQIAVAKI---DPSVKLDE-FITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             EEGGGEEEC---CTTSCCGG-GEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             EchHHEEEC---CCCCCHHH-HHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999888554   99999999 799999999999999888888999999984

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.92  E-value=3e-25  Score=179.76  Aligned_cols=140  Identities=13%  Similarity=0.037  Sum_probs=116.5

Q ss_pred             eeEEEecccCCCCCCCCCeEEEEeeccccCCCC-CCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           14 KEWYISAYASDGVPTSDHLKLRSASVSLAIDSI-PDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+++.+++       ++|+++++++    |++ +++||||||.+++||++|++.+.|.+.....+.+|...|+|++|+|
T Consensus         1 kA~~~~~~g-------~pl~i~~v~~----P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V   69 (171)
T d1h2ba1           1 KAARLHEYN-------KPLRIEDVDY----PRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYI   69 (171)
T ss_dssp             CEEEESSTT-------SCCEEECCCC----CCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEE
T ss_pred             CEEEEEeCC-------CCCEEEEeeC----CCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeee
Confidence            577777764       5699998876    654 6899999999999999999999986544334445555556999999


Q ss_pred             EEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCcccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYLS  143 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa  143 (356)
                      +++|++++++++||||++.                             .|+|+||+++++++++++   |+++|++. ++
T Consensus        70 ~~vG~~v~~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~e~-aa  145 (171)
T d1h2ba1          70 EEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKL---PKDVRVEV-DI  145 (171)
T ss_dssp             EEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEEC---CTTCCCCE-EE
T ss_pred             ecccCCCCcCCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceec---CCCCCHHH-HH
Confidence            9999999999999999841                             278999999999988555   99999987 68


Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      ++.+++.|||+++. .+++ .|++|||
T Consensus       146 ~~~~~~~ta~~al~-~~~~-~G~~VlI  170 (171)
T d1h2ba1         146 HKLDEINDVLERLE-KGEV-LGRAVLI  170 (171)
T ss_dssp             EEGGGHHHHHHHHH-TTCC-SSEEEEE
T ss_pred             HHHhHHHHHHHHHH-hcCC-CCCEEEe
Confidence            89999999999996 5777 8999998

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.92  E-value=2.7e-24  Score=174.59  Aligned_cols=165  Identities=19%  Similarity=0.204  Sum_probs=136.0

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +|+|+  |++..++.+||+++. .+++++|++|+|+|+ |++|++++|+||..|++|++++++++|+++++ ++|++..+
T Consensus         1 VS~e~--Aal~ePla~a~~a~~-~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~-~~ga~~~~   75 (170)
T d1e3ja2           1 VSLEE--GALLEPLSVGVHACR-RAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTL   75 (170)
T ss_dssp             SCHHH--HHTHHHHHHHHHHHH-HHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEE
T ss_pred             CCHHH--HHHHHHHHHHHHHHH-HhCCCCCCEEEEEcc-cccchhhHhhHhhhcccccccchHHHHHHHHH-HcCCcEEE
Confidence            57888  567788999999996 578999999999985 99999999999999999999999999999999 99998777


Q ss_pred             ecCC----hhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccce
Q 042784          216 NYNS----EMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEV  290 (356)
Q Consensus       216 ~~~~----~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (356)
                      +++.    ..++.+.+++..++++|+||||+|.+ .++.++++++++|+++.+|....        ....++..++.|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~--------~~~~~~~~~~~k~i  147 (170)
T d1e3ja2          76 VVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQ--------MVTVPLVNACAREI  147 (170)
T ss_dssp             ECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSS--------CCCCCHHHHHTTTC
T ss_pred             eccccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCC--------CCCcCHHHHHHCCC
Confidence            6543    13455666667788999999999986 78999999999999999997653        12345667889999


Q ss_pred             EEEEEecccccchHHHHHHHHHHHHHcCC
Q 042784          291 KMEGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      ++.++....      +.++++++++++|+
T Consensus       148 ~i~gs~~~~------~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         148 DIKSVFRYC------NDYPIALEMVASGR  170 (170)
T ss_dssp             EEEECCSCS------SCHHHHHHHHHTTS
T ss_pred             EEEEEECCH------HHHHHHHHHHHcCC
Confidence            999875332      23567888888875

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=1.6e-24  Score=175.98  Aligned_cols=140  Identities=15%  Similarity=0.039  Sum_probs=112.8

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |||+++++++       +++++++++.    |+|+++||||||++++||++|++++++........|+.+||  |++|+|
T Consensus         1 MkA~v~~~~g-------~pl~i~~v~~----P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~Gh--E~~G~V   67 (171)
T d1rjwa1           1 MKAAVVEQFK-------EPLKIKEVEK----PTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH--EGVGIV   67 (171)
T ss_dssp             CEEEEBSSTT-------SCCEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCS--CEEEEE
T ss_pred             CeEEEEecCC-------CCcEEEEeEC----CCCCCCeEEEEEEEeeccccceeeeecccccccccccccCC--EEEEEE
Confidence            7888888764       5699998866    78999999999999999999999988654444445555555  999999


Q ss_pred             EEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccccc
Q 042784           93 RVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPDYL  142 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~a  142 (356)
                      +++|++++.+++||||++.                              +|+|+||+++++++++++   |++++++.  
T Consensus        68 v~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~i---P~~~~~e~--  142 (171)
T d1rjwa1          68 EEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKI---PDNTIIEV--  142 (171)
T ss_dssp             EEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEEC---CTTCCEEE--
T ss_pred             EEecccccCceeeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEEC---CCCCCHHH--
Confidence            9999999999999999841                              278999999999888554   99999865  


Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcC
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAA  173 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~  173 (356)
                      |+|. ...++++++. .+.+ +|++|||.|-
T Consensus       143 A~l~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         143 QPLE-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             EEGG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             HHHH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            5664 4556777775 4555 5999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.92  E-value=9.9e-25  Score=180.47  Aligned_cols=144  Identities=15%  Similarity=0.110  Sum_probs=120.3

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      |++|||+++.+.+       ++|+++++|+    |+|+++||||||.++|||++|++++.|.... ...|..+|  +|++
T Consensus         4 ~~~~kAav~~~~g-------~~l~i~evp~----P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~-~~~p~v~G--hE~~   69 (197)
T d2fzwa1           4 VIKCKAAVAWEAG-------KPLSIEEIEV----APPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILG--HLGA   69 (197)
T ss_dssp             CEEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCC--CEEE
T ss_pred             ceEEEEEEEccCC-------CCCEEEEEEC----CCCCCCEEEEEEEEecCCCCcHHHHcCCccc-ccccccCC--ccee
Confidence            3459999998664       6799999977    8899999999999999999999999985432 23445555  5999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEE
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYS  119 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~  119 (356)
                      |+|.++|++++.+++||||++.                                                  .|+|+||+
T Consensus        70 G~V~~vG~~V~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~  149 (197)
T d2fzwa1          70 GIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYT  149 (197)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEE
T ss_pred             eEEEeecCCceecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEE
Confidence            9999999999999999999841                                                  17899999


Q ss_pred             eecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEE
Q 042784          120 LLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVS  171 (356)
Q Consensus       120 ~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~  171 (356)
                      ++++.+++++   |+++++++ +|++.+++.|++.++..+..-+.+++|||+
T Consensus       150 vvp~~~~~~v---p~~l~~~~-aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         150 VVADISVAKI---DPLIKVDE-FVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             EEEGGGEEEC---CTTSCSGG-GEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             EechHHEEEC---CCCCCHHH-HhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999888555   89999998 789999999999998655555788999884

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.1e-24  Score=176.41  Aligned_cols=164  Identities=24%  Similarity=0.280  Sum_probs=133.4

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      .+++. +|++.|++.|+|+++. .+++++|++|+|+|+ |++|++++|+||.+|+++++++.+++++++++ ++|+++++
T Consensus         4 ~~~a~-~Apl~Cag~Tay~al~-~~~~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~-~lGad~~i   79 (168)
T d1uufa2           4 EQLAA-VAPLLCAGITTYSPLR-HWQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADEVV   79 (168)
T ss_dssp             GGHHH-HGGGGTHHHHHHHHHH-HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSEEE
T ss_pred             ccHHH-HHHHHhHHHHHHHHHH-HhCCCCCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHHh-ccCCcEEE
Confidence            45566 7889999999999996 689999999999996 99999999999999998889999999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          216 NYNSEMSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      |+.+ .+...    ...+++|++|||+|.+ .++.++++++++|+++.+|.....       ....+...++.|++++.+
T Consensus        80 ~~~~-~~~~~----~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-------~~~~~~~~l~~k~~~i~G  147 (168)
T d1uufa2          80 NSRN-ADEMA----AHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATP-------HKSPEVFNLIMKRRAIAG  147 (168)
T ss_dssp             ETTC-HHHHH----TTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC--------------CHHHHHTTTCEEEE
T ss_pred             ECch-hhHHH----HhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCC-------cccccHHHHHHCCcEEEE
Confidence            9986 33222    1235899999999986 799999999999999999975441       223456667789999999


Q ss_pred             EecccccchHHHHHHHHHHHHHcCCe
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~i  320 (356)
                      +..++.     ..++++++++.+++|
T Consensus       148 s~~~~~-----~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         148 SMIGGI-----PETQEMLDFCAEHGI  168 (168)
T ss_dssp             CCSCCH-----HHHHHHHHHHHHHTC
T ss_pred             EeecCH-----HHHHHHHHHHHHcCC
Confidence            877653     557888888887654

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=6.5e-25  Score=168.88  Aligned_cols=129  Identities=16%  Similarity=0.113  Sum_probs=108.2

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||||++++++       ++++++++++    |+|+++|||||+++++||++|++.+.|.+......|+.+|  +|++|+|
T Consensus         1 MkA~~~~~~G-------~~l~~~e~~~----p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G--~E~~G~V   67 (131)
T d1iz0a1           1 MKAWVLKRLG-------GPLELVDLPE----PEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG--MEVVGVV   67 (131)
T ss_dssp             CEEEEECSTT-------SCEEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCC--CEEEEEE
T ss_pred             CcEEEEccCC-------CCCEEEEccC----CCCCCCEEEEEEEEEeccccccccccccccccccceeEee--eeeEEee
Confidence            7899999875       5689988866    7899999999999999999999999986655444455555  4889988


Q ss_pred             EEeccCCCCCCCCCEEE--eccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784           93 RVIRSKDSKYSDGDIVL--RAFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~--~~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                                 +||||+  ..+|+|+||+++++++++.+   |+++|+++ ||++++.+.|||+++.+.+  +.|++||+
T Consensus        68 -----------vGd~V~~~~~~G~~aey~~v~~~~~~~~---P~~~~~~~-aa~~~~~~~Ta~~al~~~g--~~g~tvl~  130 (131)
T d1iz0a1          68 -----------EGRRYAALVPQGGLAERVAVPKGALLPL---PEGRPVVG-PVFPFAEAEAAFRALLDRG--HTGKVVVR  130 (131)
T ss_dssp             -----------TTEEEEEECSSCCSBSEEEEEGGGCEEC---CTTCCCEE-EEEEGGGHHHHHHHTTCTT--CCBEEEEE
T ss_pred             -----------ccceEEEEeccCccceeeeeCHHHeEEc---cCCCCHHH-HHHHHHHHHHHHHHHHhcc--cCCCEEEE
Confidence                       499998  23499999999999998665   99999999 8999999999999997655  55999987


Q ss_pred             E
Q 042784          171 S  171 (356)
Q Consensus       171 ~  171 (356)
                      +
T Consensus       131 l  131 (131)
T d1iz0a1         131 L  131 (131)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-24  Score=175.26  Aligned_cols=165  Identities=21%  Similarity=0.214  Sum_probs=137.1

Q ss_pred             CCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCce
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDA  214 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v  214 (356)
                      +|+++  |++..++.+||+++. .+++++|++|+|+|+ |++|++++++|+.+|+ +|++++++++|+++++ ++|++++
T Consensus         1 vS~e~--Aal~epla~a~~a~~-~~~~~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~Ga~~~   75 (171)
T d1pl8a2           1 VTFEE--GALIEPLSVGIHACR-RGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIGADLV   75 (171)
T ss_dssp             SCHHH--HHHHHHHHHHHHHHH-HHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEE
T ss_pred             CCHHH--HHHHHHHHHHHHHHH-HhCCCCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-HhCCccc
Confidence            57888  567789999999996 678999999999997 9999999999999999 8999999999999999 9999999


Q ss_pred             eecCChhhHHHH---HHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccce
Q 042784          215 FNYNSEMSFDAA---LTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEV  290 (356)
Q Consensus       215 ~~~~~~~~~~~~---i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (356)
                      +++.+ .+..+.   +....+.++|+||||+|.+ .++.++++++++|+++.+|....        ....++..++.|++
T Consensus        76 ~~~~~-~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~--------~~~~~~~~~~~k~l  146 (171)
T d1pl8a2          76 LQISK-ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSE--------MTTVPLLHAAIREV  146 (171)
T ss_dssp             EECSS-CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCS--------CCCCCHHHHHHTTC
T ss_pred             ccccc-cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCC--------CCccCHHHHHHCCc
Confidence            98876 444333   3333467899999999986 78999999999999999998654        12346677888999


Q ss_pred             EEEEEecccccchHHHHHHHHHHHHHcCCe
Q 042784          291 KMEGFMIGSHMDRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i  320 (356)
                      ++.|+....      +.++++++++++|++
T Consensus       147 ~i~Gs~~~~------~~~~~al~li~~gki  170 (171)
T d1pl8a2         147 DIKGVFRYC------NTWPVAISMLASKSV  170 (171)
T ss_dssp             EEEECCSCS------SCHHHHHHHHHTTSC
T ss_pred             EEEEEeCCH------hHHHHHHHHHHcCCC
Confidence            999875321      246788999999987

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.91  E-value=5.7e-24  Score=173.57  Aligned_cols=171  Identities=15%  Similarity=0.166  Sum_probs=136.2

Q ss_pred             ccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceee
Q 042784          138 FPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFN  216 (356)
Q Consensus       138 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~  216 (356)
                      +++ ||.|+|++.|||+++.+.+++++||+|+|+|+ |++|++++++++..|+ +|++++.+++|+++++ ++|++++++
T Consensus         3 le~-aa~l~ca~~Tay~al~~~~~vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~-~~Ga~~~i~   79 (176)
T d2jhfa2           3 LEK-VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EVGATECVN   79 (176)
T ss_dssp             HHH-HGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEEC
T ss_pred             HHH-HhHhhcHHHHHHHHHHHhhCCCCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH-HhCCeeEEe
Confidence            566 89999999999999988999999999999998 9999999999999997 9999999999999999 999999998


Q ss_pred             cCChhh-HHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEE
Q 042784          217 YNSEMS-FDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEG  294 (356)
Q Consensus       217 ~~~~~~-~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      +.+.++ ..+.++...++|+|++||++|.. .++.++.+++++|..+.++......      ........++.+++++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~i~G  153 (176)
T d2jhfa2          80 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS------QNLSMNPMLLLSGRTWKG  153 (176)
T ss_dssp             GGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTT------CCEEECTHHHHTTCEEEE
T ss_pred             cCCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCc------ccccccHHHHhCCCEEEE
Confidence            765333 45555556677999999999986 6788999998886555555433311      112233345668999999


Q ss_pred             EecccccchHHHHHHHHHHHHHcCC
Q 042784          295 FMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      +..++..  .++.+.++++++.+|+
T Consensus       154 s~~G~~~--~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         154 AIFGGFK--SKDSVPKLVADFMAKK  176 (176)
T ss_dssp             CSGGGCC--HHHHHHHHHHHHHTTS
T ss_pred             EEEeCCC--HHHHHHHHHHHHHCcC
Confidence            8877653  3466788889888875

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.7e-25  Score=180.32  Aligned_cols=168  Identities=21%  Similarity=0.294  Sum_probs=132.7

Q ss_pred             CCccccccccCchhhhHHHHHH---HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIE---VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      +|+.+ ||+++++++|||++++   +.+..+.+++|||+||+|++|.+++|+||.+|++|+++++++++.+.++ ++|++
T Consensus         1 l~~~~-Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~-~lGad   78 (177)
T d1o89a2           1 LDARK-AMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK-SLGAS   78 (177)
T ss_dssp             CCHHH-HHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTEE
T ss_pred             CCHHH-HHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH-hhccc
Confidence            46778 8999999999998764   3455556679999999999999999999999999999999999999999 99999


Q ss_pred             ceeecCChhhHHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          213 DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       213 ~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      +++||++ .++.+   .+.....|.++|++|++.+..++++++++|+++.+|...+..       ...+...++.|++++
T Consensus        79 ~vi~~~~-~~~~~---~l~~~~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~~-------~~~~~~~~~~k~~~i  147 (177)
T d1o89a2          79 RVLPRDE-FAESR---PLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFT-------LPTTVMPFILRNVRL  147 (177)
T ss_dssp             EEEEGGG-SSSCC---SSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCSC-------CCCCSHHHHHHCCEE
T ss_pred             ccccccc-HHHHH---HHHhhcCCeeEEEcchHHHHHHHHHhccccceEeecccCCcc-------ccccHHHHHHCCCeE
Confidence            9999875 33332   233356899999999999999999999999999999876522       234566778899999


Q ss_pred             EEEecccc-cchHHHHHHHHHHHHH
Q 042784          293 EGFMIGSH-MDRFADFTVEMESYIK  316 (356)
Q Consensus       293 ~~~~~~~~-~~~~~~~l~~~~~~~~  316 (356)
                      .|++.... .+...+.++++.+.+.
T Consensus       148 ~G~~~~~~~~~~~~~~~~~L~~~l~  172 (177)
T d1o89a2         148 QGVDSVMTPPERRAQAWQRLVADLP  172 (177)
T ss_dssp             EECCSSSCCHHHHHHHHHHHHHHSC
T ss_pred             EEEecccCCHHHHHHHHHHHHHhcc
Confidence            99765432 2333444555554443

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.91  E-value=8.5e-24  Score=174.25  Aligned_cols=141  Identities=13%  Similarity=0.025  Sum_probs=110.1

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      |.+|+|.++.+.+       ++|+++++++    |+|+++||||||.+++||++|++++.|.+    ..++|...|+|++
T Consensus         1 ~k~~~Aav~~~~g-------~~l~l~~v~~----P~p~~geVlVkv~a~gic~sD~~~~~G~~----~~~~P~i~GHE~~   65 (194)
T d1f8fa1           1 LKDIIAAVTPCKG-------ADFELQALKI----RQPQGDEVLVKVVATGMCHTDLIVRDQKY----PVPLPAVLGHEGS   65 (194)
T ss_dssp             CEEEEEEEBCSTT-------CCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHTTSS----CCCSSBCCCCEEE
T ss_pred             CceeEEEEEcCCC-------CCcEEEEeeC----CCCCCCEEEEEEEEEEecCchHhhhhhcc----cccCCcccccceE
Confidence            4567888888654       7899999977    78999999999999999999999998753    2334455555999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec---------------------------------------------------cCCeeeE
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA---------------------------------------------------FLPVAEY  118 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~---------------------------------------------------~g~~a~~  118 (356)
                      |+|+++|+++++|++||||+..                                                   .|+|+||
T Consensus        66 G~V~~vG~~v~~~~vGDrVv~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~  145 (194)
T d1f8fa1          66 GIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATY  145 (194)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSE
T ss_pred             EEeeecCccceeEccCceeeeecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeecccccccccccee
Confidence            9999999999999999999731                                                   1467777


Q ss_pred             EeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEE
Q 042784          119 SLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGS  195 (356)
Q Consensus       119 ~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~  195 (356)
                      +++++.+++++   |+++++++ +                         +++.| +|++|++++|+++.+|+ +|+++
T Consensus       146 ~~v~~~~~~~i---p~~i~~~~-~-------------------------~~i~g-~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         146 ALSRENNTVKV---TKDFPFDQ-L-------------------------VKFYA-FDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             EEEEGGGEEEE---CTTCCGGG-G-------------------------EEEEE-GGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             EEEehHHEEEC---CCCCCccc-E-------------------------EEEeC-cHHHHHHHHHHHHHcCCCEEEEe
Confidence            77777666443   66666655 2                         33455 59999999999999999 55553

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.91  E-value=1.7e-23  Score=170.60  Aligned_cols=170  Identities=19%  Similarity=0.177  Sum_probs=135.2

Q ss_pred             CccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCcee
Q 042784          137 PFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       137 s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      ++++ ||.|.|++.|+|+++.+.+++++|++|+|+|+ |++|++++++++..|+ +|++++++++|++.++ ++|+++++
T Consensus         2 P~e~-aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~GAd~~i   78 (175)
T d1cdoa2           2 PLDT-VCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VFGATDFV   78 (175)
T ss_dssp             CHHH-HGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCCEEE
T ss_pred             CHHH-HHHhhcHHHHHHHHHHHhhCCCCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH-HcCCcEEE
Confidence            3567 89999999999999988899999999999997 9999999999999988 8999999999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHC-CCCceEEEECCchh-hHHHHHHhcccCCEE-EEEecccccccccccccchhhhhhhhccceEE
Q 042784          216 NYNSEMSFDAALTKYF-PNGIDVYLDNVGGK-MLEAVLNHVNVHARI-ILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~-~~~~~~~~l~~~G~~-v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      |+.+..++.+++.+.+ ++|+|+++|++|.. .++.++.+++++|.+ +..|.....        ........+.++.++
T Consensus        79 n~~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~i  150 (175)
T d1cdoa2          79 NPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLH--------DVATRPIQLIAGRTW  150 (175)
T ss_dssp             CGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSS--------CEEECHHHHHTTCEE
T ss_pred             cCCCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCc--------ccCccHHHHHCCcEE
Confidence            9876444555555554 67999999999985 778888888777544 444443321        112333445677899


Q ss_pred             EEEecccccchHHHHHHHHHHHHHcCC
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      .++..+++.  .++++.++++++.+|+
T Consensus       151 ~Gs~~G~~~--~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         151 KGSMFGGFK--GKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             EECSGGGCC--HHHHHHHHHHHHHTTS
T ss_pred             EEEEEeCCc--HHHHHHHHHHHHHcCC
Confidence            998777653  3577888999998875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.90  E-value=1.9e-23  Score=169.81  Aligned_cols=168  Identities=14%  Similarity=0.156  Sum_probs=131.7

Q ss_pred             CccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCcee
Q 042784          137 PFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAF  215 (356)
Q Consensus       137 s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~  215 (356)
                      +++. ||.++|++.|+|+++.+.+++++|++|+|+|+ |++|++++|+++..|+ +|++++.+++|+++++ ++|+++++
T Consensus         3 P~e~-aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak-~~GA~~~i   79 (176)
T d1d1ta2           3 PPEK-VCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM-AVGATECI   79 (176)
T ss_dssp             CHHH-HGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HHTCSEEE
T ss_pred             CHHH-HHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHH-hcCCcEEE
Confidence            3677 89999999999999988899999999999997 9999999999999997 9999999999999999 99999999


Q ss_pred             ecCChhhHHHHHHHHC-CCCceEEEECCchh-hHHHHHHhcccC-CEEEEEecccccccccccccchhhhhhhhccceEE
Q 042784          216 NYNSEMSFDAALTKYF-PNGIDVYLDNVGGK-MLEAVLNHVNVH-ARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKM  292 (356)
Q Consensus       216 ~~~~~~~~~~~i~~~~-~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      |+++.....+.+.+.+ ++|+|++||++|.. .+..++..+.++ |+++.+|......     . ...+. ..+.++.++
T Consensus        80 n~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~-----~-~~~~~-~~~~~~~~i  152 (176)
T d1d1ta2          80 SPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAK-----M-LTYDP-MLLFTGRTW  152 (176)
T ss_dssp             CGGGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTC-----C-EEECT-HHHHTTCEE
T ss_pred             CccccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEcccccc-----c-cCCCH-HHHhCCCEE
Confidence            9876333455555555 67999999999986 677777777555 9999999865421     1 11122 234467789


Q ss_pred             EEEecccccchHHHHHHHHHHHHH
Q 042784          293 EGFMIGSHMDRFADFTVEMESYIK  316 (356)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~  316 (356)
                      +|+..++...  ++++.++++++.
T Consensus       153 ~Gs~~G~~~~--~~dip~li~~~~  174 (176)
T d1d1ta2         153 KGCVFGGLKS--RDDVPKLVTEFL  174 (176)
T ss_dssp             EECSGGGCCH--HHHHHHHHHHHT
T ss_pred             EEEEEeCCCc--HHHHHHHHHHHh
Confidence            9987766532  355666666543

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.8e-24  Score=173.64  Aligned_cols=142  Identities=11%  Similarity=-0.011  Sum_probs=113.2

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      .+++++++++        |++++++++++    |+|+++||||||.+++||++|++++++...+....+++...|+|++|
T Consensus         6 p~~~a~V~~g--------p~~l~l~evp~----P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G   73 (185)
T d1pl8a1           6 PNNLSLVVHG--------PGDLRLENYPI----PEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASG   73 (185)
T ss_dssp             CCCEEEEEEE--------TTEEEEEECCC----CCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEE
T ss_pred             CCCEEEEEeC--------CCeEEEEEeEC----CCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeee
Confidence            3567888884        36799998866    78999999999999999999999988654444444455555569999


Q ss_pred             EEEEeccCCCCCCCCCEEEec------------------------------cCCeeeEEeecCCcccccCCCCCCCCccc
Q 042784           91 IARVIRSKDSKYSDGDIVLRA------------------------------FLPVAEYSLLPCDLLTRKLDPASGIPFPD  140 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~------------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~~~  140 (356)
                      +|+++|+++++|++||||++.                              .|+|+||++++.++++++   |+++++++
T Consensus        74 ~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~l---P~~~~~~~  150 (185)
T d1pl8a1          74 TVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKL---PDNVKPLV  150 (185)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEEC---CTTCGGGE
T ss_pred             eEEEeccceeeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEEC---CCCCCHHH
Confidence            999999999999999999841                              267999999999888555   99999988


Q ss_pred             cccccCchhhhHHHHHHHhCCCCCCCEEEEE
Q 042784          141 YLSSLGIPGFAAWVGIEVLGQPKSGSNVFVS  171 (356)
Q Consensus       141 ~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~  171 (356)
                       ++.+  ++.+|++++. ..++++|++|||.
T Consensus       151 -aa~~--pl~~a~~a~~-~~~~~~G~~VlIg  177 (185)
T d1pl8a1         151 -THRF--PLEKALEAFE-TFKKGLGLKIMLK  177 (185)
T ss_dssp             -EEEE--EGGGHHHHHH-HHHTTCCSEEEEE
T ss_pred             -HHHH--HHHHHHHHHH-HhCCCCCCEEEEE
Confidence             5544  3456777775 5668999999984

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.90  E-value=8.8e-24  Score=176.00  Aligned_cols=140  Identities=14%  Similarity=0.125  Sum_probs=116.3

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      ++|||+++...+       ++++++++++    |+|+++||||||.++|||++|++.++|...    .++|...|+|++|
T Consensus         7 ~~~KAaV~~~~g-------~pl~i~evp~----P~p~~geVlVkv~a~gic~sD~~~~~G~~~----~~~P~v~GHE~~G   71 (202)
T d1e3ia1           7 IKCKAAIAWKTG-------SPLCIEEIEV----SPPKACEVRIQVIATCVCPTDINATDPKKK----ALFPVVLGHECAG   71 (202)
T ss_dssp             EEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHTTCTTSC----CCSSBCCCCEEEE
T ss_pred             EEEEEEEEccCC-------CCCEEEEEEC----CCCCCCEEEEEEEEEEEeccccceeeeecc----cccccccccccce
Confidence            368899988653       5699999977    788999999999999999999999987542    3334444559999


Q ss_pred             EEEEeccCCCCCCCCCEEEec------------------------------------------------------cCCee
Q 042784           91 IARVIRSKDSKYSDGDIVLRA------------------------------------------------------FLPVA  116 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~------------------------------------------------------~g~~a  116 (356)
                      +|+++|++++++++||||+..                                                      .|+|+
T Consensus        72 ~V~~vG~~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~fa  151 (202)
T d1e3ia1          72 IVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFS  151 (202)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSB
T ss_pred             EEeeecCCceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCce
Confidence            999999999999999999741                                                      17899


Q ss_pred             eEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEc
Q 042784          117 EYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSA  172 (356)
Q Consensus       117 ~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g  172 (356)
                      ||+++++..++++   |++++++. ++++.+++.+++.++..   +++|++|.|..
T Consensus       152 ey~~v~~~~l~~l---P~~~~~~~-~~~~~~~~~~~~~a~~~---~k~G~~V~vi~  200 (202)
T d1e3ia1         152 QYTVVSEANLARV---DDEFDLDL-LVTHALPFESINDAIDL---MKEGKSIRTIL  200 (202)
T ss_dssp             SEEEEEGGGEEEC---CTTSCGGG-GEEEEEEGGGHHHHHHH---HHTTCCSEEEE
T ss_pred             EEEEEehhhEEEC---CCCCCHHH-HHHHHHHHHHHHHHHHh---CCCCCEEEEEE
Confidence            9999999888554   99999987 78999999999998853   47899998864

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.9e-23  Score=171.58  Aligned_cols=146  Identities=12%  Similarity=-0.027  Sum_probs=115.2

Q ss_pred             ceeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeee
Q 042784            9 ETVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILA   88 (356)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~   88 (356)
                      .+.++|+|.+...     .....+++.+.+.    ++++++||||||.++|||++|++.+.|.+. .  .++|+..|+|+
T Consensus         3 ~P~~~ka~~~~~~-----~~~~~~~~~~~~p----~p~~~~eVlVkv~a~giC~sDl~~~~g~~~-~--~~~P~i~GHE~   70 (192)
T d1piwa1           3 YPEKFEGIAIQSH-----EDWKNPKKTKYDP----KPFYDHDIDIKIEACGVCGSDIHCAAGHWG-N--MKMPLVVGHEI   70 (192)
T ss_dssp             TTTCEEEEEECCS-----SSTTSCEEEEECC----CCCCTTEEEEEEEEEEECHHHHHHHTTTTS-C--CCSSEECCCCE
T ss_pred             CCceeEEEEEeCC-----CcCCcceEeeccC----CCCCCCeEEEEEeeeCCCcchHHHHcCCCC-C--CCCCcCccccc
Confidence            3557899999865     3446677777653    568999999999999999999999987532 2  23444444599


Q ss_pred             eEEEEEeccCC-CCCCCCCEEEec-------------------------------------cCCeeeEEeecCCcccccC
Q 042784           89 FGIARVIRSKD-SKYSDGDIVLRA-------------------------------------FLPVAEYSLLPCDLLTRKL  130 (356)
Q Consensus        89 ~G~v~~vg~~v-~~~~~Gd~V~~~-------------------------------------~g~~a~~~~v~~~~~~~~i  130 (356)
                      +|+|+++|+++ +.+++||||.+.                                     +|+|+||+++++..++.+ 
T Consensus        71 ~G~Vv~vG~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~i-  149 (192)
T d1piwa1          71 VGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPI-  149 (192)
T ss_dssp             EEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEEC-
T ss_pred             ccchhhcccccccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEEC-
Confidence            99999999987 569999999621                                     278999999999888554 


Q ss_pred             CCCCCCCccccccccCch-hhhHHHHHHHhCCCCCCCEEEEEc
Q 042784          131 DPASGIPFPDYLSSLGIP-GFAAWVGIEVLGQPKSGSNVFVSA  172 (356)
Q Consensus       131 ~~P~~~s~~~~aa~l~~~-~~ta~~~l~~~~~~~~g~~VlV~g  172 (356)
                        |++++++.  |++.++ +.|||+++. .+++++|++|+|..
T Consensus       150 --P~~l~~e~--Aal~~~~~~ta~~~l~-~~~vk~g~~Vvv~~  187 (192)
T d1piwa1         150 --PENIWVET--LPVGEAGVHEAFERME-KGDVRYRFTLVGYD  187 (192)
T ss_dssp             --CTTCCEEE--EESSHHHHHHHHHHHH-HTCCSSEEEEECCH
T ss_pred             --CCCCCHHH--HHHHHHHHHHHHHHHH-HhCCCCCCEEEEEC
Confidence              99999987  456665 679999996 79999999999863

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=3.2e-24  Score=172.21  Aligned_cols=143  Identities=24%  Similarity=0.368  Sum_probs=118.1

Q ss_pred             chhhhHHHH---HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhH
Q 042784          147 IPGFAAWVG---IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSF  223 (356)
Q Consensus       147 ~~~~ta~~~---l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~  223 (356)
                      ++++|||.+   |.+.+..+++++|||+||+|++|.+++|+||.+|++|+++++++++.++++ ++|++++++++  +..
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~-~lGad~vi~~~--~~~   79 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK-QLGASEVISRE--DVY   79 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH-HHTCSEEEEHH--HHC
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH-hhcccceEecc--chh
Confidence            456777755   555566778999999999999999999999999999999999999999999 99999999874  222


Q ss_pred             HHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhccceEEEEEeccc
Q 042784          224 DAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIGKEVKMEGFMIGS  299 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (356)
                      .+.+....++++|+|||++|++.++.++++|+++|+++.+|...+.       ....+...++.|++++.++....
T Consensus        80 ~~~~~~~~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~g~-------~~~~~~~~l~~k~~~i~G~~~~~  148 (167)
T d1tt7a2          80 DGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGG-------EVPATVYPFILRGVSLLGIDSVY  148 (167)
T ss_dssp             SSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCS-------CEEECSHHHHTSCCEEEECCSSS
T ss_pred             chhhhcccCCCceEEEecCcHHHHHHHHHHhccCceEEEeeccCCC-------cccCCHHHHHHCCcEEEEEecCC
Confidence            3333334467899999999999999999999999999999987762       23446777899999999976543

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.89  E-value=6.8e-23  Score=167.05  Aligned_cols=142  Identities=15%  Similarity=0.036  Sum_probs=111.1

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCC-----ccCCCccCceee
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGL-----YFPQFNLNQVIL   87 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~-----~~~~~~~g~~~~   87 (356)
                      |||+++.+++       ++|+++++++    |+|+++||||||.+++||++|+++++|.+...     ...++|+..|+|
T Consensus         1 MKA~~~~~~G-------~pl~i~dv~~----P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE   69 (177)
T d1jvba1           1 MRAVRLVEIG-------KPLSLQEIGV----PKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE   69 (177)
T ss_dssp             CEEEEECSTT-------SCCEEEECCC----CCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCE
T ss_pred             CeEEEEEeCC-------CCCEEEEeeC----CCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccce
Confidence            7899999875       5599998866    78899999999999999999999998753221     123455555569


Q ss_pred             eeEEEEEeccCCCCCCCCCEEEec-----------------------------cCCeeeEEeecCCcccccCCCCCCCCc
Q 042784           88 AFGIARVIRSKDSKYSDGDIVLRA-----------------------------FLPVAEYSLLPCDLLTRKLDPASGIPF  138 (356)
Q Consensus        88 ~~G~v~~vg~~v~~~~~Gd~V~~~-----------------------------~g~~a~~~~v~~~~~~~~i~~P~~~s~  138 (356)
                      ++|+|+++|+++.++++||||++.                             .|+|+||++++..++++++  |+ ++.
T Consensus        70 ~~G~V~~~g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~--~~-~~~  146 (177)
T d1jvba1          70 IAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL--RR-VKP  146 (177)
T ss_dssp             EEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC--SS-SCC
T ss_pred             EEEEEeeeccCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEEC--CC-CCh
Confidence            999999999999999999999731                             1899999999987776774  44 554


Q ss_pred             cccccccCchhhhHHHHHHHhCCCCCCCEEEE
Q 042784          139 PDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFV  170 (356)
Q Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  170 (356)
                      .++|+.+..++.+|++++. ..++ .|++|||
T Consensus       147 ~~~a~~~~~~~~~a~~~~~-~~~~-~G~~VlI  176 (177)
T d1jvba1         147 MITKTMKLEEANEAIDNLE-NFKA-IGRQVLI  176 (177)
T ss_dssp             CCEEEEEGGGHHHHHHHHH-TTCC-CSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-hhcc-cCCceEC
Confidence            4524444578889999996 5665 5999987

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.89  E-value=4.9e-26  Score=185.90  Aligned_cols=161  Identities=15%  Similarity=0.038  Sum_probs=126.5

Q ss_pred             eeeeeeEEEecccCCCCCCC-CCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCcc-------CCCc
Q 042784           10 TVESKEWYISAYASDGVPTS-DHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYF-------PQFN   81 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~-------~~~~   81 (356)
                      |.++||+++++++     .| +.+++++.++  |.|+|+++||||||++++||++|+++++|.......       ...+
T Consensus         1 m~t~kA~v~~~~G-----~p~~~l~l~~~~~--p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~   73 (175)
T d1gu7a1           1 MITAQAVLYTQHG-----EPKDVLFTQSFEI--DDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPA   73 (175)
T ss_dssp             CEEEEEEEESSCS-----CHHHHCEEEEEEE--CTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCB
T ss_pred             CceeEEEEEccCC-----CcccccEEEEEEC--CCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCC
Confidence            5679999999864     33 4577777777  447899999999999999999999999875332211       1233


Q ss_pred             cCceeeeeEEEEEeccCCCCCCCCCEEEe---ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHH
Q 042784           82 LNQVILAFGIARVIRSKDSKYSDGDIVLR---AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEV  158 (356)
Q Consensus        82 ~g~~~~~~G~v~~vg~~v~~~~~Gd~V~~---~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~  158 (356)
                      ...+++++|+|..+|.++..++.||+|..   ..|+|+||+++++++++++   |++++.+   +++++.++|||+++..
T Consensus        74 ~v~G~e~~g~V~~~~~~~~~~~~g~~v~~~~~~~g~~aey~~v~~~~~~~i---P~~~~~~---~a~~~~~~ta~~~l~~  147 (175)
T d1gu7a1          74 APCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKL---PNPAQSK---ANGKPNGLTDAKSIET  147 (175)
T ss_dssp             EECCSCCEEEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEE---CCHHHHH---HTTCSCCCCCCCCEEE
T ss_pred             cccccccccccccccccccccccccceeccccccccccceeeehhhhccCC---Cccchhh---hhccchHHHHHHHHHH
Confidence            33445889999999999999999999983   3488999999999998655   8877643   4556788899999864


Q ss_pred             -hCCCCCCCEEEEEc-CCChHHHHHHH
Q 042784          159 -LGQPKSGSNVFVSA-AAGGVGMFAGQ  183 (356)
Q Consensus       159 -~~~~~~g~~VlV~g-~~g~vG~~~i~  183 (356)
                       .+++++|++|||+| |+|++|.+++|
T Consensus       148 ~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         148 LYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             ECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             HhcCCCCCCEEEEECccchhhhheEEe
Confidence             46799999999998 55789987765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.6e-22  Score=166.81  Aligned_cols=169  Identities=17%  Similarity=0.141  Sum_probs=135.4

Q ss_pred             ccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCCh
Q 042784          142 LSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSE  220 (356)
Q Consensus       142 aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~  220 (356)
                      +++|+..+.|||+++. .+++++|++|||+|+ |++|++++++|+..|+ +|++++.+++|+++++ ++|+++++++.+ 
T Consensus         4 ~~~l~d~~~ta~~a~~-~a~v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~-~~Ga~~~~~~~~-   79 (195)
T d1kola2           4 LTCLSDILPTGYHGAV-TAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQGFEIADLSLD-   79 (195)
T ss_dssp             HGGGGTHHHHHHHHHH-HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCEEEETTSS-
T ss_pred             HHhcccHHHHHHHHHH-HhCCCCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhh-hccccEEEeCCC-
Confidence            6899999999999985 689999999999996 9999999999999999 9999999999999999 999999998887 


Q ss_pred             hhHHHHHHHHCC-CCceEEEECCch----------------hhHHHHHHhcccCCEEEEEeccccccccccc-----ccc
Q 042784          221 MSFDAALTKYFP-NGIDVYLDNVGG----------------KMLEAVLNHVNVHARIILCGMISQYNKVWTE-----RDG  278 (356)
Q Consensus       221 ~~~~~~i~~~~~-~~~d~vld~~g~----------------~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-----~~~  278 (356)
                      .++.+.+.++++ .++|++|||+|.                +.++.++++++++|+++.+|...+.......     ...
T Consensus        80 ~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~  159 (195)
T d1kola2          80 TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSL  159 (195)
T ss_dssp             SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCC
T ss_pred             cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCce
Confidence            789999999884 589999999984                3799999999999999999986543211000     011


Q ss_pred             hhhhhhhhccceEEEEEecccccchHHHHHHHHHHHHHcCC
Q 042784          279 VRNLLNMIGKEVKMEGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      ...+..++.|++++.+...     ....+++++++++.+++
T Consensus       160 ~~~~~~~~~k~~~i~~g~~-----~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         160 SIRFGLGWAKSHSFHTGQT-----PVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             CCCHHHHHHTTCEEEESSC-----CHHHHHHHHHHHHHTTS
T ss_pred             eeeHHHHHhhcceeccCCC-----chHHHHHHHHHHHHcCC
Confidence            1233445678888754211     13355678888887764

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.7e-22  Score=163.27  Aligned_cols=137  Identities=13%  Similarity=0.102  Sum_probs=108.0

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      .+|||+++..++       ++++++++++    |+|+++||||||.++|||++|+++++|.+. ....|+.+|  +|++|
T Consensus         3 ~k~kA~v~~~~~-------~pl~i~ev~~----P~~~~~evlVkv~a~gIC~sD~~~~~G~~~-~~~~P~vlG--HE~~G   68 (184)
T d1vj0a1           3 LKAHAMVLEKFN-------QPLVYKEFEI----SDIPRGSILVEILSAGVCGSDVHMFRGEDP-RVPLPIILG--HEGAG   68 (184)
T ss_dssp             EEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTCEEEEEEEEEECHHHHHHHTTCCT-TCCSSBCCC--CEEEE
T ss_pred             ceEEEEEEecCC-------CCcEEEEeeC----CCCCCCEEEEEEEEECCCCCchhheeccCC-ccccccccc--eeeee
Confidence            467888888654       5699999877    789999999999999999999999997542 223445555  59999


Q ss_pred             EEEEeccCCC-----CCCCCCEEEec--------------------------------------cCCeeeEEeecC-Ccc
Q 042784           91 IARVIRSKDS-----KYSDGDIVLRA--------------------------------------FLPVAEYSLLPC-DLL  126 (356)
Q Consensus        91 ~v~~vg~~v~-----~~~~Gd~V~~~--------------------------------------~g~~a~~~~v~~-~~~  126 (356)
                      +|+++|++++     .+++||||++.                                      +|+|+||++++. .++
T Consensus        69 ~V~~vG~~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v  148 (184)
T d1vj0a1          69 RVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDV  148 (184)
T ss_dssp             EEEEESSCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCE
T ss_pred             eeeEEeccccccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcE
Confidence            9999999886     46899999841                                      378999999964 566


Q ss_pred             cccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEc
Q 042784          127 TRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSA  172 (356)
Q Consensus       127 ~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g  172 (356)
                      ++ +  |++++++.       ++.+|++++. .+++++|++|||+-
T Consensus       149 ~~-i--p~~l~~~~-------pl~~A~~a~~-~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         149 LK-V--SEKITHRL-------PLKEANKALE-LMESREALKVILYP  183 (184)
T ss_dssp             EE-E--CTTCCEEE-------EGGGHHHHHH-HHHHTSCSCEEEEC
T ss_pred             EE-C--CCCCCHHH-------HHHHHHHHHH-HhCCCcCCEEEEee
Confidence            44 4  89999754       3457788885 67899999999973

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.1e-22  Score=156.25  Aligned_cols=128  Identities=17%  Similarity=0.175  Sum_probs=103.4

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |||+++..+     +++..+++++++.    |+|+++||+|||.|+|||++|...+.|.+......|+.+  |++++|+|
T Consensus         1 MkA~v~~~~-----~~~~~l~i~~v~~----p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~--G~e~~G~V   69 (146)
T d1o89a1           1 LQALLLEQQ-----DGKTLASVQTLDE----SRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIP--GIDFAGTV   69 (146)
T ss_dssp             CEEEEEECC--------CEEEEEECCG----GGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCC--CSEEEEEE
T ss_pred             CeEEEEEcC-----CCceEEEEEEcCC----CCCCCCEEEEEEeeccCccceeeEEEeecccccccceec--cccccccc
Confidence            788988875     4556788888866    789999999999999999999999988654443344444  45999999


Q ss_pred             EEeccCCCCCCCCCEEEe--------ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHH
Q 042784           93 RVIRSKDSKYSDGDIVLR--------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIE  157 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~--------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~  157 (356)
                      .++|.+  .+++||+|++        .+|+|+||+++++++++++   |+++|+++ ||+++++++||+.++.
T Consensus        70 ~~~~~~--~~~~g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~l---P~~ls~~e-AA~l~~a~~tA~~~~~  136 (146)
T d1o89a1          70 RTSEDP--RFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAM---PQGQAAKE-ISLSEAPNFAEAIINN  136 (146)
T ss_dssp             EEECST--TCCTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEEC---CTTSCCEE-ECGGGHHHHHHHHHTT
T ss_pred             eeeccC--CccceeeEEeecccceecCCCcceeeeeeeeeeEEEC---CCCCCHHH-HHHHHHHHHHHHHHHH
Confidence            997764  7899999984        1499999999999999666   99999999 8999999999866553

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=3e-24  Score=172.26  Aligned_cols=149  Identities=15%  Similarity=0.134  Sum_probs=119.5

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      +.+|+++++..+     ....+++++++.    |+++++||||||+|+|||++|++.+.|.......++..+  +++++|
T Consensus         2 ~~~ka~~~~~~g-----~~~~l~~~~v~~----p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~--g~e~~G   70 (162)
T d1tt7a1           2 TLFQALQAEKNA-----DDVSVHVKTIST----EDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLIL--GIDAAG   70 (162)
T ss_dssp             CEEEEEEECCGG-----GSCCCEEEEEES----SSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEEC--CSEEEE
T ss_pred             CcEEEEEEEecC-----CCeEEEEEEcCC----CCCCCCEEEEEEEEecccchhhheeeecccccccceeee--eeeccc
Confidence            358899998764     457799999876    889999999999999999999999987544333333444  458888


Q ss_pred             EEEEeccCCCCCCCCCEEEe--------ccCCeeeEEeecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCC
Q 042784           91 IARVIRSKDSKYSDGDIVLR--------AFLPVAEYSLLPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQP  162 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~--------~~g~~a~~~~v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~  162 (356)
                      +|.+  +.+.++++||+|+.        .+|+|+||++++++.++++   |+++|+++ ||+++..++|||.++.. .+.
T Consensus        71 ~v~~--~~~~~~~~g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~i---P~~ls~~~-Aa~~~~~~~ta~~~~~~-~~~  143 (162)
T d1tt7a1          71 TVVS--SNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPL---PQNLSLKE-AMVDQLLTIVDREVSLE-ETP  143 (162)
T ss_dssp             EEEE--CSSTTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEEC---CTTCCHHH-HHHSCSTTSEEEEECST-THH
T ss_pred             cccc--ccccccccceeeEeeeccceeccccccceEEEecHHHEEEC---CCCCCHHH-HHHHHHHHHHHHHHHHh-cCC
Confidence            8776  56678999999983        1489999999999998665   99999999 89999999999988653 445


Q ss_pred             CCCCEEEEEcCCChH
Q 042784          163 KSGSNVFVSAAAGGV  177 (356)
Q Consensus       163 ~~g~~VlV~g~~g~v  177 (356)
                      ..+++|||+|++|++
T Consensus       144 ~~~~~Vli~ga~G~v  158 (162)
T d1tt7a1         144 GALKDILQNRIQGRV  158 (162)
T ss_dssp             HHHHHTTTTCCSSEE
T ss_pred             CCCCEEEEECCcceE
Confidence            566889999987764

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.86  E-value=9.2e-22  Score=163.02  Aligned_cols=140  Identities=14%  Similarity=0.111  Sum_probs=109.8

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      .+|||+++....       ++|+++++++    |+|+++||||||.++|||++|++.++|.+.    .++|...|+|++|
T Consensus         7 ~k~KAavl~~~~-------~~l~i~ev~~----P~p~~~eVlVkV~a~giC~sDl~~~~G~~~----~~~P~i~GHE~~G   71 (198)
T d2jhfa1           7 IKCKAAVLWEEK-------KPFSIEEVEV----APPKAHEVRIKMVATGICRSDDHVVSGTLV----TPLPVIAGHEAAG   71 (198)
T ss_dssp             EEEEEEEBCSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHHTSSC----CCSSBCCCCSEEE
T ss_pred             eEEEEEEEecCC-------CCCEEEEEEC----CCCCCCEEEEEEEEEecccccceeecCCcc----cccceecccceeE
Confidence            468888888553       6799999977    789999999999999999999999997532    3344555559999


Q ss_pred             EEEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEe
Q 042784           91 IARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSL  120 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~  120 (356)
                      +|.++|++++++++||||++.                                                  .|+|+||++
T Consensus        72 ~Vv~vG~~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~  151 (198)
T d2jhfa1          72 IVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTV  151 (198)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEE
T ss_pred             EEEecCccccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEE
Confidence            999999999999999999841                                                  168999999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEc
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSA  172 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g  172 (356)
                      +++.+++..   |++++++. +++...++.+...+..   .+++|++|+|..
T Consensus       152 v~~~~~~~~---p~~~~~e~-l~~~~~~~~~v~~g~~---~l~~G~~VaVi~  196 (198)
T d2jhfa1         152 VDEISVAKI---DAAFALDP-LITHVLPFEKINEGFD---LLRSGESIRTIL  196 (198)
T ss_dssp             EEGGGEEEC---CTTSCCGG-GEEEEEEGGGHHHHHH---HHHTTCCSEEEE
T ss_pred             eCHHHeEEC---CCCCCHHH-HHHHHHHHHhhhhCCc---eeeCCCEEEEEE
Confidence            999988555   88888876 5555555544443332   367899998863

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=1.3e-24  Score=179.91  Aligned_cols=157  Identities=13%  Similarity=0.007  Sum_probs=118.8

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccc---cCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSL---AIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      +||++++..        +++++++++.|.   |.+.|.++||||||.+++||++|+++++|...  ...|..+|  +|++
T Consensus         2 ~kA~v~~~~--------~~le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~--~~~P~v~G--HE~~   69 (201)
T d1kola1           2 NRGVVYLGS--------GKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT--AQVGLVLG--HEIT   69 (201)
T ss_dssp             EEEEEEEET--------TEEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC--CCTTCBCC--CCEE
T ss_pred             cEEEEEeCC--------CceEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc--cccceecc--ceee
Confidence            678888854        579999997742   22345789999999999999999999987542  23344555  4999


Q ss_pred             EEEEEeccCCCCCCCCCEEEec---------------------------------------cCCeeeEEeecCC-ccccc
Q 042784           90 GIARVIRSKDSKYSDGDIVLRA---------------------------------------FLPVAEYSLLPCD-LLTRK  129 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~---------------------------------------~g~~a~~~~v~~~-~~~~~  129 (356)
                      |+|+++|++|++|++||||++.                                       .|+|+||+++|.. ..+.+
T Consensus        70 G~Vv~vG~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~  149 (201)
T d1kola1          70 GEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLK  149 (201)
T ss_dssp             EEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEE
T ss_pred             eeeeccccccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEE
Confidence            9999999999999999999741                                       2789999999853 22344


Q ss_pred             CCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC
Q 042784          130 LDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC  190 (356)
Q Consensus       130 i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~  190 (356)
                      |  ||+.+..+ ++++...+.++++++. .++.+.++    +|+ |++|++++|+||.+|+
T Consensus       150 i--Pd~~~~~~-~~~~~~~~~~~~~a~~-~~~~~~g~----~g~-G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         150 L--PDRDKAME-KINIAEVVGVQVISLD-DAPRGYGE----FDA-GVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             C--SCHHHHHH-TCCHHHHHTEEEECGG-GHHHHHHH----HHH-TCSCEEEECTTCSSCC
T ss_pred             C--CCCCChHH-HHHHHHHHHHHHHHHH-hCCCCCeE----Eee-CHHHHHHHHHHHHcCC
Confidence            5  88766656 5777777778887764 33334443    475 9999999999999986

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.84  E-value=1.1e-22  Score=164.70  Aligned_cols=138  Identities=16%  Similarity=0.059  Sum_probs=101.0

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      ||+++++..        +++++++.|+    |.|+++|||||++++|||++|++.+.+..... ..|+.+|  +|++|+|
T Consensus         1 MKa~v~~~~--------~~l~i~e~p~----P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~-~~P~i~G--hE~~G~V   65 (177)
T d1jqba1           1 MKGFAMLGI--------NKLGWIEKER----PVAGSYDAIVRPLAVSPCTSDIHTVFEGALGD-RKNMILG--HEAVGEV   65 (177)
T ss_dssp             CEEEEEEET--------TEEEEEECCC----CCCCTTCEEEEEEEECCCHHHHHHHHHCTTCC-CSSEECC--CCEEEEE
T ss_pred             CeEEEEEeC--------CCeEEEEeeC----CCCCCCEEEEEEEEEecCCCcccccccCCCCC-CCCccCc--ceeeEEe
Confidence            788888854        5799999866    78999999999999999999998776433222 3344455  5999999


Q ss_pred             EEeccCCCCCCCCCEEEec--------------------------------cCCeeeEEeecCC--cccccCCCCCCCCc
Q 042784           93 RVIRSKDSKYSDGDIVLRA--------------------------------FLPVAEYSLLPCD--LLTRKLDPASGIPF  138 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--------------------------------~g~~a~~~~v~~~--~~~~~i~~P~~~s~  138 (356)
                      +++|+++++|++||||++.                                .|+|+||+++|..  .+ .++  |+++++
T Consensus        66 ~~vG~~v~~~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l-~~i--P~~~~~  142 (177)
T d1jqba1          66 VEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNL-AIL--PKDVDL  142 (177)
T ss_dssp             EEECTTCCSCCTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHC-EEC--CTTSCG
T ss_pred             eecccccceecCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeE-EEC--CCCcch
Confidence            9999999999999999730                                2789999999963  34 444  999999


Q ss_pred             cccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHH
Q 042784          139 PDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFA  181 (356)
Q Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~  181 (356)
                      ++ +++......   ..+        ++.+++.|+ |++|+.+
T Consensus       143 ~~-~~~~~~~~~---~~~--------~~~vlv~g~-gp~gl~a  172 (177)
T d1jqba1         143 SK-LVTHVYHGF---DHI--------EEALLLMKD-KPKDLIK  172 (177)
T ss_dssp             GG-GEEEEEESG---GGH--------HHHHHHHHH-CCTTCSE
T ss_pred             HH-HHHHHHHHH---HHh--------cCceEEECC-CHHHhhe
Confidence            87 444333222   222        344677775 7666543

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.83  E-value=4e-21  Score=158.71  Aligned_cols=139  Identities=16%  Similarity=0.086  Sum_probs=106.8

Q ss_pred             eeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeE
Q 042784           11 VESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFG   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G   90 (356)
                      .+|||+++...+       ++|+++++++    |+|+++||||||.+++||++|+++++|...    ..+|...|+|++|
T Consensus         7 ~~~KAav~~~~g-------~~l~i~ev~~----P~p~~~eVlVkv~a~gICgsDlh~~~G~~~----~~~P~i~GHE~~G   71 (198)
T d1p0fa1           7 ITCKAAVAWEPH-------KPLSLETITV----APPKAHEVRIKILASGICGSDSSVLKEIIP----SKFPVILGHEAVG   71 (198)
T ss_dssp             EEEEEEEBSSTT-------SCCEEEEEEE----CCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCCEEE
T ss_pred             eEEEEEEEccCC-------CCCEEEEEEC----CCCCCCEEEEEEEEEEEecccceeeeeccc----cccccccceeeee
Confidence            368888877543       6799999987    788999999999999999999999987542    2344444559999


Q ss_pred             EEEEeccCCCCCCCCCEEEec--------------------------------------------------cCCeeeEEe
Q 042784           91 IARVIRSKDSKYSDGDIVLRA--------------------------------------------------FLPVAEYSL  120 (356)
Q Consensus        91 ~v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~g~~a~~~~  120 (356)
                      +|+++|+++.++++||||++.                                                  .|+|+||++
T Consensus        72 ~Vv~~G~~v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~  151 (198)
T d1p0fa1          72 VVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTV  151 (198)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEE
T ss_pred             eeeecCcccccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEE
Confidence            999999999999999999941                                                  157899999


Q ss_pred             ecCCcccccCCCCCCCCccccccccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHH
Q 042784          121 LPCDLLTRKLDPASGIPFPDYLSSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGM  179 (356)
Q Consensus       121 v~~~~~~~~i~~P~~~s~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~  179 (356)
                      +++..+++.   |++++++. +++..+...+          +.++++|||.|+ |++|+
T Consensus       152 v~~~~~~ki---p~~~~~~~-~~~~~~~~~~----------v~~~~~vlv~G~-G~iGl  195 (198)
T d1p0fa1         152 VADIAVAKI---DPKINVNF-LVSTKLTLDQ----------INKAFELLSSGQ-GVRSI  195 (198)
T ss_dssp             EETTSEEEE---CTTSCGGG-GEEEEECGGG----------HHHHHHHTTTSS-CSEEE
T ss_pred             ecHHHEEEC---CCCCCHHH-HHHhhcchhh----------cCCCCEEEEECC-CcceE
Confidence            999888554   88888776 4544444333          233455778885 87775

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.8e-20  Score=150.80  Aligned_cols=129  Identities=12%  Similarity=-0.010  Sum_probs=98.0

Q ss_pred             eeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeeeEEE
Q 042784           13 SKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAFGIA   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~G~v   92 (356)
                      |||+...+.       .++|+++|++.    |+|+++||||||.++|||++|++.+.|.+... ..|+.+|  +|++|+|
T Consensus         1 m~a~~~~~~-------~~pl~i~ev~~----P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~-~~P~i~G--hE~~G~V   66 (179)
T d1uufa1           1 IKAVGAYSA-------KQPLEPMDITR----REPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT-VYPCVPG--HEIVGRV   66 (179)
T ss_dssp             CEEEEBSST-------TSCCEEEECCC----CCCCTTEEEEEEEEEECCHHHHHHHHCTTSCC-CSSBCCC--CCEEEEE
T ss_pred             CeEEEEccC-------CCCCEEEEecC----CCCCCCEEEEEEEEECCCCCcceeeeeeeccc-ccccccc--ccccccc
Confidence            566666543       37899999966    89999999999999999999999999754332 3344455  5999999


Q ss_pred             EEeccCCCCCCCCCEEEec--------------------------------------cCCeeeEEeecCCcccccCCCCC
Q 042784           93 RVIRSKDSKYSDGDIVLRA--------------------------------------FLPVAEYSLLPCDLLTRKLDPAS  134 (356)
Q Consensus        93 ~~vg~~v~~~~~Gd~V~~~--------------------------------------~g~~a~~~~v~~~~~~~~i~~P~  134 (356)
                      +++|++|+++++||||.+.                                      +|+|+||++++++++++ +  |+
T Consensus        67 ~~vG~~V~~~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~-i--p~  143 (179)
T d1uufa1          67 VAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLR-I--RV  143 (179)
T ss_dssp             EEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEE-C--CC
T ss_pred             hhhccccccCCCCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEE-C--CC
Confidence            9999999999999999631                                      27899999999988744 4  53


Q ss_pred             CCCccccccccCchhhhHHHHHHHhCCCC
Q 042784          135 GIPFPDYLSSLGIPGFAAWVGIEVLGQPK  163 (356)
Q Consensus       135 ~~s~~~~aa~l~~~~~ta~~~l~~~~~~~  163 (356)
                      ...  .  +++..++.++++++. .+.++
T Consensus       144 ~~~--~--~~~a~~l~~a~~a~~-~a~v~  167 (179)
T d1uufa1         144 ADI--E--MIRADQINEAYERML-RGDVK  167 (179)
T ss_dssp             CCE--E--EECGGGHHHHHHHHH-TTCSS
T ss_pred             CCc--C--hhHhchhHHHHHHHH-HhCcc
Confidence            332  2  233456778898886 45554

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.80  E-value=6.9e-19  Score=137.04  Aligned_cols=142  Identities=25%  Similarity=0.429  Sum_probs=108.5

Q ss_pred             eeeeeeEEEecccCCCCCCCCCeEEEEeeccccCCCCCCCcEEEEEEEEEeChhhhhhhcCCCCCCccCCCccCceeeee
Q 042784           10 TVESKEWYISAYASDGVPTSDHLKLRSASVSLAIDSIPDHHVAVETLWISIDPYLRATMTGTNDGLYFPQFNLNQVILAF   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~eVlVkv~~~~i~~~d~~~~~g~~~~~~~~~~~~g~~~~~~   89 (356)
                      |.++|+|++++. +++.+.+++|++++.++    |+|+++|||||+++.+++|+.+....         ++..|....+.
T Consensus         1 M~~~k~~vl~~~-P~G~P~~~~f~l~e~~i----p~~~~gevLvk~~~~svDp~~R~~~~---------~~~~g~~~~g~   66 (147)
T d1v3va1           1 MVKAKSWTLKKH-FQGKPTQSDFELKTVEL----PPLKNGEVLLEALFLSVDPYMRIASK---------RLKEGAVMMGQ   66 (147)
T ss_dssp             CCEEEEEEESSC-CCSSCCGGGEEEEEEEC----CCCCTTCEEEEEEEEECCTHHHHHGG---------GSCTTSBCCCC
T ss_pred             CcccEEEEEccC-CCCCCcccceEEEEEEC----CCCCCCEEEEEEEEEeEccccccccc---------ccccCCccccc
Confidence            567899999987 67777788999999987    78999999999999999998765443         23334444555


Q ss_pred             EEEEEeccCCCCCCCCCEEEeccCCeeeEEeecCCcccccCCC--C-CCCCccccccccCchhhhH-HHHHHHhCCCCCC
Q 042784           90 GIARVIRSKDSKYSDGDIVLRAFLPVAEYSLLPCDLLTRKLDP--A-SGIPFPDYLSSLGIPGFAA-WVGIEVLGQPKSG  165 (356)
Q Consensus        90 G~v~~vg~~v~~~~~Gd~V~~~~g~~a~~~~v~~~~~~~~i~~--P-~~~s~~~~aa~l~~~~~ta-~~~l~~~~~~~~g  165 (356)
                      |++++++++.++|++||+|+ ++++|+||.+++.+.+ .+++.  | +..+... ++++...++|| |..+.  ...+.|
T Consensus        67 ~vg~Vv~S~~~~f~~GD~V~-g~~gw~ey~v~~~~~l-~kv~~~~~~~~~~~~~-~~~lG~~Gmtaay~gl~--~~~k~G  141 (147)
T d1v3va1          67 QVARVVESKNSAFPAGSIVL-AQSGWTTHFISDGKGL-EKLLTEWPDKKIQYHE-HVTKGFENMPAAFIEML--NGANLG  141 (147)
T ss_dssp             EEEEEEEESCTTSCTTCEEE-ECCCSBSEEEECSSSC-EECCTTCCTTSSCCCE-EEEECGGGHHHHHHHHH--TTCCSS
T ss_pred             eEEEEEEeCCCcccCCCEEE-EccCCEeEEEecccee-eEccccccccccchhh-hHhccccchHHHHHHhh--CCCCCC
Confidence            77777789999999999999 9999999999999887 44431  1 1233434 46788888874 54664  445679


Q ss_pred             CEEEE
Q 042784          166 SNVFV  170 (356)
Q Consensus       166 ~~VlV  170 (356)
                      ++|++
T Consensus       142 etvv~  146 (147)
T d1v3va1         142 KAVVT  146 (147)
T ss_dssp             EEEEE
T ss_pred             CEEEe
Confidence            99987

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.4e-16  Score=108.53  Aligned_cols=74  Identities=27%  Similarity=0.407  Sum_probs=67.6

Q ss_pred             CCccccccccCchhhhHHHHHH---HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC
Q 042784          136 IPFPDYLSSLGIPGFAAWVGIE---VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY  211 (356)
Q Consensus       136 ~s~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~  211 (356)
                      +|+++ |++++++++|||+++.   +....+++++|||+|++|++|.+++|++|.+|++|+++++++++.++++ ++|+
T Consensus         1 ls~~e-Aa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~-~lGA   77 (77)
T d1o8ca2           1 LDARK-AMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK-SLGA   77 (77)
T ss_dssp             CCHHH-HHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTE
T ss_pred             CCHHH-HHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-HCCC
Confidence            57888 8999999999998875   3466789999999999999999999999999999999999999999999 8885

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.46  E-value=8e-07  Score=68.50  Aligned_cols=101  Identities=16%  Similarity=0.186  Sum_probs=79.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +.-+|+|.|+ |.+|+.+++.|+.+|++|.+.+.+.++++.++..++......+.+...+.+.+.+     +|+||.++-
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-----aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAE-----ADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHT-----CSEEEECCC
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhcc-----CcEEEEeee
Confidence            4578999998 9999999999999999999999999999999866665444444443566666654     899999863


Q ss_pred             ---hh----hHHHHHHhcccCCEEEEEecccccc
Q 042784          244 ---GK----MLEAVLNHVNVHARIILCGMISQYN  270 (356)
Q Consensus       244 ---~~----~~~~~~~~l~~~G~~v~~g~~~~~~  270 (356)
                         ..    .-.+.++.|++++.+|.+....+..
T Consensus       105 ipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~  138 (168)
T d1pjca1         105 VPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGC  138 (168)
T ss_dssp             CTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCS
T ss_pred             cCCcccCeeecHHHHhhcCCCcEEEEeecCCCCc
Confidence               22    3467788999999999998766533

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4e-06  Score=69.94  Aligned_cols=78  Identities=21%  Similarity=0.285  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc--eeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD--AFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~--v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++++...  ..|..+.+++.+.+.++  +++|+++++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~--g~iDilVnn   83 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSV--GPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC--CCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHh--CCceEEEec
Confidence            68999999999999999999999999999999999999888776776533  33555534444333333  479999998


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        84 Ag   85 (244)
T d1pr9a_          84 AA   85 (244)
T ss_dssp             CC
T ss_pred             cc
Confidence            87

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=5e-06  Score=69.19  Aligned_cols=78  Identities=22%  Similarity=0.273  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .|+++||+|+++++|.++++.+...|++|+.+++++++.+.+.++++....  .|..+...+.+.+.++  +++|+++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~--g~iDilVnn   81 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGI--GPVDLLVNN   81 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC--CCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHc--CCCeEEEEC
Confidence            489999999999999999999999999999999999988877767654322  3444434444444333  579999999


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .|
T Consensus        82 Ag   83 (242)
T d1cyda_          82 AA   83 (242)
T ss_dssp             CC
T ss_pred             Cc
Confidence            87

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.15  E-value=1.1e-05  Score=64.56  Aligned_cols=78  Identities=19%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC----C-CceeecCChhhHHHHHHHHCCCCce
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG----Y-DDAFNYNSEMSFDAALTKYFPNGID  236 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g----~-~~v~~~~~~~~~~~~i~~~~~~~~d  236 (356)
                      --.|++++|+||+|++|..+++.+...|++|+.++++.++.+.+.+++.    . ....|..+....    .+.. +++|
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~-~~iD   94 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASR----AEAV-KGAH   94 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHH----HHHT-TTCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHH----HHHh-cCcC
Confidence            3479999999999999999999999999999999999988877654432    2 233455442333    3322 4599


Q ss_pred             EEEECCch
Q 042784          237 VYLDNVGG  244 (356)
Q Consensus       237 ~vld~~g~  244 (356)
                      ++|++.|.
T Consensus        95 ilin~Ag~  102 (191)
T d1luaa1          95 FVFTAGAI  102 (191)
T ss_dssp             EEEECCCT
T ss_pred             eeeecCcc
Confidence            99999874

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.13  E-value=5.2e-06  Score=69.12  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+++++.. ..|..+..++.+.+.+..  -+++|++++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence            48999999999999999999999999999999999999988886777632 235555444444333322  146999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        84 nAG   86 (242)
T d1ulsa_          84 YAG   86 (242)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            987

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.10  E-value=6.1e-06  Score=64.38  Aligned_cols=103  Identities=17%  Similarity=0.102  Sum_probs=73.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee-ecCCh------------------hhHHH
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF-NYNSE------------------MSFDA  225 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~-~~~~~------------------~~~~~  225 (356)
                      .-+|+|+|+ |.+|+.++..|+.+|++|.+.+.+.++++.++ +++...+. ++...                  ....+
T Consensus        29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~-~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEECCC-----------------------CCHHH
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH-HhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            468999998 99999999999999999999999999999999 77764221 00000                  01122


Q ss_pred             HHHHHCCCCceEEEECCc---hh----hHHHHHHhcccCCEEEEEecccccc
Q 042784          226 ALTKYFPNGIDVYLDNVG---GK----MLEAVLNHVNVHARIILCGMISQYN  270 (356)
Q Consensus       226 ~i~~~~~~~~d~vld~~g---~~----~~~~~~~~l~~~G~~v~~g~~~~~~  270 (356)
                      .+.+.. ...|+||-++-   ..    .-++.++.|++++.+|.+....+..
T Consensus       107 ~l~~~l-~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn  157 (183)
T d1l7da1         107 AVLKEL-VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGN  157 (183)
T ss_dssp             HHHHHH-TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             HHHHHH-HhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCc
Confidence            222211 34899998763   22    3467788999999999998766543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=6.7e-06  Score=68.46  Aligned_cols=105  Identities=24%  Similarity=0.416  Sum_probs=76.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|++++|+||++++|.++++.+...|++|+.+++++++.+.+.++++..   ...|..+..++.+.+.+..  -+++|++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL   82 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence            4899999999999999999999999999999999999988887777653   2234455444444444432  2579999


Q ss_pred             EECCchh--------------------------hHHHHHHhc--ccCCEEEEEecccc
Q 042784          239 LDNVGGK--------------------------MLEAVLNHV--NVHARIILCGMISQ  268 (356)
Q Consensus       239 ld~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~~~  268 (356)
                      +++.|..                          ..+.++..|  +.+|+++.++...+
T Consensus        83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~  140 (243)
T d1q7ba_          83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVG  140 (243)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred             hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhh
Confidence            9988721                          123455555  34689999886554

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=7.2e-06  Score=68.26  Aligned_cols=80  Identities=24%  Similarity=0.310  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++++...   ..|..+..++.+.+.+..  -+++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idil   84 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   84 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeEE
Confidence            48999999999999999999999999999999999999888877776431   134445444444444332  1469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        85 innAG   89 (244)
T d1nffa_          85 VNNAG   89 (244)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99988

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.04  E-value=4.5e-05  Score=58.72  Aligned_cols=75  Identities=19%  Similarity=0.269  Sum_probs=60.0

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEE
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      .+ -.+.+|||.|+ |.+|.++++.+...|+ +++++.++.++.+.+.+++|.. +.++   .++.+.+.+     +|+|
T Consensus        20 ~~-l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~---~~~~~~l~~-----~Div   88 (159)
T d1gpja2          20 GS-LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF---DELVDHLAR-----SDVV   88 (159)
T ss_dssp             SC-CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG---GGHHHHHHT-----CSEE
T ss_pred             CC-cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccc---hhHHHHhcc-----CCEE
Confidence            44 45899999997 9999999999988999 7999999988877666688854 4555   456666654     8999


Q ss_pred             EECCchh
Q 042784          239 LDNVGGK  245 (356)
Q Consensus       239 ld~~g~~  245 (356)
                      |.|++.+
T Consensus        89 i~atss~   95 (159)
T d1gpja2          89 VSATAAP   95 (159)
T ss_dssp             EECCSSS
T ss_pred             EEecCCC
Confidence            9999864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.04  E-value=7.3e-06  Score=68.83  Aligned_cols=80  Identities=18%  Similarity=0.304  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|++++|+||++++|.++++.+...|++|+++++++++.+.+.+++|...   ..|..+..++.+.+.+..  -+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil   83 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDIL   83 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            48999999999999999999999999999999999999888877888642   224555444444444332  2579999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        84 VnnAg   88 (256)
T d1k2wa_          84 VNNAA   88 (256)
T ss_dssp             EECCC
T ss_pred             Eeecc
Confidence            99988

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=98.02  E-value=1.5e-05  Score=67.37  Aligned_cols=80  Identities=21%  Similarity=0.322  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-----eeecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-----AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-----v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++++...     ..|..+..++.+.+.+..  -+.+|
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            58999999999999999999999999999999999999888877776521     124444444444443332  25799


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++.+.|
T Consensus        85 ~lVnnAG   91 (268)
T d2bgka1          85 IMFGNVG   91 (268)
T ss_dssp             EEEECCC
T ss_pred             eeccccc
Confidence            9999887

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1e-05  Score=68.60  Aligned_cols=103  Identities=21%  Similarity=0.330  Sum_probs=69.4

Q ss_pred             CCCEE-EEEcCCChHHHHHHH-HHHHCCCEEEEEeCChHHHHHHHHHh---CCC-ce--eecCChhh---HHHHHHHHCC
Q 042784          164 SGSNV-FVSAAAGGVGMFAGQ-LAKLKGCKVVGSTGSDDNVKLLKEEF---GYD-DA--FNYNSEMS---FDAALTKYFP  232 (356)
Q Consensus       164 ~g~~V-lV~g~~g~vG~~~i~-la~~~G~~V~~~~~s~~~~~~~~~~~---g~~-~v--~~~~~~~~---~~~~i~~~~~  232 (356)
                      .|.+| ||+||++|+|+++++ |++.-|++|+.+++++++.+.+.+++   |.. .+  .|..+..+   +.+.+.+.. 
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~-   79 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-   79 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-
Confidence            36777 899999999998775 56667999999999999887765444   322 12  24444333   333343322 


Q ss_pred             CCceEEEECCchh--------------------------hHHHHHHhcccCCEEEEEeccc
Q 042784          233 NGIDVYLDNVGGK--------------------------MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       233 ~~~d~vld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +++|+++++.|-.                          ..+.++..|+..|+++.++...
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~  140 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM  140 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence            4799999998831                          1233455668889999887643

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.3e-05  Score=66.98  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHC--CCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYF--PNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~--~~~~d~vl  239 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++++....  .|..+.+++.+.+.+..  -+++|+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   84 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            489999999999999999999999999999999999999888866654322  24444344444333332  14699999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      ++.|
T Consensus        85 nnAG   88 (250)
T d1ydea1          85 NNAG   88 (250)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            9887

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.00  E-value=1.5e-05  Score=66.78  Aligned_cols=105  Identities=22%  Similarity=0.255  Sum_probs=75.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee---ecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF---NYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~---~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++++....+   |..+..+..+.+.+..  -+++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            4899999999999999999999999999999999999988888788865332   3344333333333322  2579999


Q ss_pred             EECCchh--------------------------hHHHHHHhcc-cCCEEEEEecccc
Q 042784          239 LDNVGGK--------------------------MLEAVLNHVN-VHARIILCGMISQ  268 (356)
Q Consensus       239 ld~~g~~--------------------------~~~~~~~~l~-~~G~~v~~g~~~~  268 (356)
                      +.+.|..                          ..+.++..|+ .+|+++.++...+
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~  141 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS  141 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhh
Confidence            9998831                          1234445554 5699998887554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.00  E-value=1.1e-05  Score=67.64  Aligned_cols=80  Identities=23%  Similarity=0.298  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++++..   ...|..+..++.+.+.+..  -+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   83 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence            5899999999999999999999999999999999999988877677643   1234444344444333322  1479999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        84 VnnAg   88 (254)
T d1hdca_          84 VNNAG   88 (254)
T ss_dssp             EECCC
T ss_pred             EecCc
Confidence            99987

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.97  E-value=1.9e-05  Score=66.19  Aligned_cols=81  Identities=15%  Similarity=0.249  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc---eeecCChhh---HHHHHHHHCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD---AFNYNSEMS---FDAALTKYFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~---v~~~~~~~~---~~~~i~~~~~~~  234 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++   .+...   ..|..+..+   +.+.+.+..++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~   84 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   84 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            589999999999999999999999999999999998876665433   34332   234444333   334444555567


Q ss_pred             ceEEEECCch
Q 042784          235 IDVYLDNVGG  244 (356)
Q Consensus       235 ~d~vld~~g~  244 (356)
                      +|+++.+.|.
T Consensus        85 idilinnag~   94 (258)
T d1ae1a_          85 LNILVNNAGV   94 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             cEEEeccccc
Confidence            9999998873

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.96  E-value=1.2e-05  Score=68.20  Aligned_cols=80  Identities=21%  Similarity=0.239  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+++|...   ..|..+..+..+.+.+..  -+.+|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil   83 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL   83 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence            48999999999999999999999999999999999999888776777532   224444334333333322  1569999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++.|
T Consensus        84 vnnAG   88 (276)
T d1bdba_          84 IPNAG   88 (276)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99887

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.7e-05  Score=65.99  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|++++|+||++++|...+..+...|++|+.+++++++.+.+.++   .|..   ...|..+.++..+.+++..  -+.+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            589999999999999999988889999999999999988766543   3432   1235555444444444432  3569


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        86 dilinnag   93 (244)
T d1yb1a_          86 SILVNNAG   93 (244)
T ss_dssp             SEEEECCC
T ss_pred             ceeEeecc
Confidence            99999988

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.95  E-value=1.6e-05  Score=66.30  Aligned_cols=104  Identities=14%  Similarity=0.139  Sum_probs=73.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHC--CCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYF--PNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~--~~~~d~vld  240 (356)
                      .|+++||+|+++++|.++++.+...|++|+..+++++..+.++ +.+... ..|..+..+..+.+.+..  -+++|++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE-AIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHH-HHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            5899999999999999999999999999999999988887776 667642 234444344333333322  157999999


Q ss_pred             CCch-----------h---------------hHHHHHHhccc--CCEEEEEecccc
Q 042784          241 NVGG-----------K---------------MLEAVLNHVNV--HARIILCGMISQ  268 (356)
Q Consensus       241 ~~g~-----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  268 (356)
                      +.|.           +               ..+.++..|+.  +|+++.++....
T Consensus        83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~  138 (248)
T d2d1ya1          83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQG  138 (248)
T ss_dssp             CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccc
Confidence            8872           0               12334455533  589998887554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.6e-05  Score=65.29  Aligned_cols=105  Identities=18%  Similarity=0.163  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC----Cc----eeecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY----DD----AFNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~----~~----v~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+++..    ..    ..|..+..++.+.+.+..  -+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            489999999999999999999999999999999999888776655432    11    234555444444444332  14


Q ss_pred             CceEEEECCchh------------------hHHHHHHhccc-----CCEEEEEecccc
Q 042784          234 GIDVYLDNVGGK------------------MLEAVLNHVNV-----HARIILCGMISQ  268 (356)
Q Consensus       234 ~~d~vld~~g~~------------------~~~~~~~~l~~-----~G~~v~~g~~~~  268 (356)
                      ++|+++++.|..                  ....++..|+.     +|+++.++...+
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~  139 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG  139 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhh
Confidence            799999999841                  12233444432     478998887554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.91  E-value=2.5e-05  Score=65.17  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ce----eecCChhhHHHHHHHHC--CCCce
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DA----FNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v----~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++++.. .+    .|..+..++.+.+.+..  -+++|
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD   84 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence            4899999999999999999999999999999999999988887676542 12    24444333333333322  15799


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      +++++.|
T Consensus        85 iLVnnAg   91 (251)
T d1zk4a1          85 TLVNNAG   91 (251)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999987

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.90  E-value=2.7e-05  Score=64.58  Aligned_cols=80  Identities=16%  Similarity=0.206  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce---eecCChhhHHHHHHHHC--CCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA---FNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v---~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .|+++||+||++++|.+.++-+...|++|+.+.+++++.+.+.++++....   .|.++..+..+.+.+..  -+++|++
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiL   83 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   83 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEe
Confidence            489999999999999999999999999999999999988888778886422   24455444444444432  1579999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+.|
T Consensus        84 innAg   88 (241)
T d2a4ka1          84 AHFAG   88 (241)
T ss_dssp             EEGGG
T ss_pred             ccccc
Confidence            99887

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.89  E-value=3.3e-05  Score=64.74  Aligned_cols=80  Identities=14%  Similarity=0.292  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHH---HCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTK---YFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~---~~~~~  234 (356)
                      .|+++||+||++++|.++++.+...|++|++.++++++.+.+.+++   |..   ...|..+..+..+.+.+   ..++.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999999999999999998877665443   322   12344443444433333   33457


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        87 idilvnnAG   95 (259)
T d2ae2a_          87 LNILVNNAG   95 (259)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            999999988

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.88  E-value=2.9e-05  Score=65.22  Aligned_cols=80  Identities=16%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+++   |..   ...|..+..++.+.+.+..  -+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4899999999999999999999999999999999998877665443   332   1234444344444333322  1569


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++++.|
T Consensus        84 DilVnnaG   91 (260)
T d1zema1          84 DFLFNNAG   91 (260)
T ss_dssp             CEEEECCC
T ss_pred             Ceehhhhc
Confidence            99999877

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=4.4e-05  Score=63.64  Aligned_cols=104  Identities=16%  Similarity=0.240  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH----HHhCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK----EEFGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.    +++|...   ..|..+..++.+.+.+..  -++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4899999999999999999999999999999999988765433    2456542   234455444444343332  147


Q ss_pred             ceEEEECCchh--------------------------hHHHHHHhc--ccCCEEEEEeccc
Q 042784          235 IDVYLDNVGGK--------------------------MLEAVLNHV--NVHARIILCGMIS  267 (356)
Q Consensus       235 ~d~vld~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~~  267 (356)
                      +|++++++|..                          ..+.++..|  +.+|+++.++...
T Consensus        84 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~  144 (251)
T d1vl8a_          84 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLT  144 (251)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccch
Confidence            99999998731                          123455566  3458999887643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.86  E-value=2.1e-05  Score=66.00  Aligned_cols=80  Identities=13%  Similarity=0.250  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHH---HCCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTK---YFPNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~---~~~~~  234 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+++   +..   ...|..+..+..+.+.+   ..++.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            4899999999999999999999999999999999998877665443   222   12344443343333333   33456


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        87 idilvnnAG   95 (259)
T d1xq1a_          87 LDILINNLG   95 (259)
T ss_dssp             CSEEEEECC
T ss_pred             ccccccccc
Confidence            999999887

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.85  E-value=2.7e-05  Score=65.86  Aligned_cols=80  Identities=20%  Similarity=0.322  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC--Cc----eeecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY--DD----AFNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~--~~----v~~~~~~~~~~~~i~~~~--~  232 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+++   +.  ..    ..|..+..++.+.+.+..  -
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999998887766443   22  11    224444344444333332  2


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +++|+++++.|
T Consensus        84 g~iDilvnnAG   94 (272)
T d1xkqa_          84 GKIDVLVNNAG   94 (272)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeCCc
Confidence            57999999876

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3e-05  Score=64.95  Aligned_cols=81  Identities=25%  Similarity=0.414  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC-Cce----eecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY-DDA----FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~-~~v----~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+++   +. ..+    .|..++++..+.+.++.  -+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999999999998877765443   22 122    24455444444443332  15


Q ss_pred             CceEEEECCch
Q 042784          234 GIDVYLDNVGG  244 (356)
Q Consensus       234 ~~d~vld~~g~  244 (356)
                      ++|+++.+.|.
T Consensus        89 ~iD~lVnnAg~   99 (257)
T d1xg5a_          89 GVDICINNAGL   99 (257)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            69999999873

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.84  E-value=5.4e-05  Score=63.37  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CC-Cce----eecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GY-DDA----FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~-~~v----~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+++   +. ..+    .|..+..++.+.+.+..  -+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999999999999999998876654332   21 122    25555444444333332  15


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+++++.|
T Consensus        83 ~iDiLVnnAG   92 (258)
T d1iy8a_          83 RIDGFFNNAG   92 (258)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6999999887

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=5.4e-05  Score=63.51  Aligned_cols=101  Identities=15%  Similarity=0.244  Sum_probs=72.2

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      ..++++||++||=.|+  |.|.+++.+|+..|  .+|++++.+++..+.+++   .+|....+.... .+..   ..+..
T Consensus        97 ~~l~i~pG~~VLDiG~--GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~-~d~~---~~~~~  170 (266)
T d1o54a_          97 MMLDVKEGDRIIDTGV--GSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV-RDIS---EGFDE  170 (266)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC-CCGG---GCCSC
T ss_pred             HhhCCCCCCEEEECCC--CCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEe-cccc---ccccc
Confidence            4688999999999984  44888889999886  499999999998888764   344422222211 2211   11223


Q ss_pred             CCceEEEECCchh--hHHHHHHhcccCCEEEEEe
Q 042784          233 NGIDVYLDNVGGK--MLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       233 ~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g  264 (356)
                      ..+|.|+--...+  .+..+.++|+|+|+++.+.
T Consensus       171 ~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         171 KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             cceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence            4689888766653  8899999999999998653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=2.7e-05  Score=65.18  Aligned_cols=80  Identities=21%  Similarity=0.285  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc---eeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD---AFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++   .|...   ..|..+..++.+.+.+..  -+++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999998887665433   34321   224444344433333322  1469


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        90 DilvnnAG   97 (255)
T d1fmca_          90 DILVNNAG   97 (255)
T ss_dssp             CEEEECCC
T ss_pred             CEeeeCCc
Confidence            99999987

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=3.6e-05  Score=65.86  Aligned_cols=81  Identities=19%  Similarity=0.185  Sum_probs=58.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--------CCc---eeecCChhhHHHHHHHHC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG--------YDD---AFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g--------~~~---v~~~~~~~~~~~~i~~~~  231 (356)
                      -.|+++||+||++++|.++++.+...|++|+++++++++.+.+.+++.        ...   ..|..+..++.+.+.+..
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999888766554432        111   124444344444444332


Q ss_pred             --CCCceEEEECCc
Q 042784          232 --PNGIDVYLDNVG  243 (356)
Q Consensus       232 --~~~~d~vld~~g  243 (356)
                        -+++|+++++.|
T Consensus        90 ~~~G~iDiLVnnAg  103 (297)
T d1yxma1          90 DTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCeEEEEeecc
Confidence              246999999887

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.79  E-value=2.9e-05  Score=65.69  Aligned_cols=80  Identities=20%  Similarity=0.358  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC--ce----eecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD--DA----FNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~--~v----~~~~~~~~~~~~i~~~~--~  232 (356)
                      .|++++|+||++++|.++++.+...|++|+++++++++.+.+.+++   |..  .+    .|..+..++.+.+.+..  -
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            4899999999999999999999999999999999998877665433   321  12    34445444444343332  1


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +.+|+++++.|
T Consensus        83 G~iDilVnnAG   93 (274)
T d1xhla_          83 GKIDILVNNAG   93 (274)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeecc
Confidence            47999999877

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.1e-05  Score=65.46  Aligned_cols=78  Identities=19%  Similarity=0.301  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+..+.. ...|... .+..+.+.+.. +++|+++++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~-~~id~lVn~a   82 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTK-KKQIDQFANEV-ERLDVLFNVA   82 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTC-HHHHHHHHHHC-SCCSEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccc-ccccccccccc-ccceeEEecc
Confidence            4899999999999999999999999999999999999888877444432 2233333 33444433332 4699999988


Q ss_pred             c
Q 042784          243 G  243 (356)
Q Consensus       243 g  243 (356)
                      |
T Consensus        83 g   83 (245)
T d2ag5a1          83 G   83 (245)
T ss_dssp             C
T ss_pred             c
Confidence            7

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=3.4e-05  Score=64.90  Aligned_cols=80  Identities=15%  Similarity=0.316  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC--ce----eecCChhhHHHHHHHHC--C
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD--DA----FNYNSEMSFDAALTKYF--P  232 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~--~v----~~~~~~~~~~~~i~~~~--~  232 (356)
                      .|+.+||+||++++|.++++.+...|++|+.+++++++.+.+.+++   |..  .+    .|..+..++.+.+.+..  -
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999998877665443   221  12    24455344444443332  2


Q ss_pred             CCceEEEECCc
Q 042784          233 NGIDVYLDNVG  243 (356)
Q Consensus       233 ~~~d~vld~~g  243 (356)
                      +++|+++++.|
T Consensus        84 g~iDilvnnAG   94 (264)
T d1spxa_          84 GKLDILVNNAG   94 (264)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEeecccc
Confidence            57999999987

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.76  E-value=4.7e-05  Score=65.06  Aligned_cols=80  Identities=16%  Similarity=0.229  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH----HhCCCc-e--eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE----EFGYDD-A--FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+    +.|... .  .|..+..++.+.+....  .++
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            47999999999999999999999999999999999877654433    334432 2  23444344433333322  357


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus       104 iDilvnnAg  112 (294)
T d1w6ua_         104 PNIVINNAA  112 (294)
T ss_dssp             CSEEEECCC
T ss_pred             cchhhhhhh
Confidence            999999987

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.76  E-value=4.3e-05  Score=64.08  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH----HhCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE----EFGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++++.+.+.+    ++|...   ..|..+..++.+.+.+..  -++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            48999999999999999999999999999999998776544322    456431   234455444444444332  257


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        88 iDilVnnAg   96 (260)
T d1h5qa_          88 ISGLIANAG   96 (260)
T ss_dssp             EEEEEECCC
T ss_pred             CcEeccccc
Confidence            999999887

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.75  E-value=5.8e-05  Score=62.90  Aligned_cols=80  Identities=16%  Similarity=0.323  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--CCCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      .++.+||+||++++|.++++.+...|++|+.+++++++.+.+.+++   |..   ...|..+..++.+.+.+..  -+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            4789999999999999999988899999999999998877665443   432   1224445444444444332  2579


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        89 Dilvnnag   96 (251)
T d2c07a1          89 DILVNNAG   96 (251)
T ss_dssp             CEEEECCC
T ss_pred             eeeeeccc
Confidence            99999887

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.73  E-value=6.7e-05  Score=62.73  Aligned_cols=79  Identities=18%  Similarity=0.301  Sum_probs=57.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc---eeecCChhhHHHHHHHHC--CCCce
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD---AFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      |+.+||+||++++|.+.++.+...|++|+.+++++++.+.+.++   .|...   ..|..+..++.+.+.+..  -+++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            67789999999999999999999999999999998877665543   34331   224445444444443332  25799


Q ss_pred             EEEECCc
Q 042784          237 VYLDNVG  243 (356)
Q Consensus       237 ~vld~~g  243 (356)
                      ++++++|
T Consensus        82 ilVnnAG   88 (257)
T d2rhca1          82 VLVNNAG   88 (257)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999987

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=1.4e-05  Score=66.12  Aligned_cols=101  Identities=16%  Similarity=0.142  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCC---hhhHHHHHHHHC-CCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNS---EMSFDAALTKYF-PNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~---~~~~~~~i~~~~-~~~~d~vl  239 (356)
                      .|++|||+||++++|.++++.+...|++|+.+++.+.+.....  .-..  .+...   ...+...+.+.. .+++|+++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iD~lI   76 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASAS--VIVK--MTDSFTEQADQVTAEVGKLLGDQKVDAIL   76 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEE--EECC--CCSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccc--ceee--cccCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence            4789999999999999999999999999999886543321100  0000  01111   122333333333 34799999


Q ss_pred             ECCch------------hh---------------HHHHHHhcccCCEEEEEecccc
Q 042784          240 DNVGG------------KM---------------LEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       240 d~~g~------------~~---------------~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +++|.            +.               ...++..++.+|+++.++....
T Consensus        77 nnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~  132 (236)
T d1dhra_          77 CVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAA  132 (236)
T ss_dssp             ECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             ECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHH
Confidence            98872            01               1234556788999999887654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.72  E-value=0.00022  Score=59.94  Aligned_cols=105  Identities=21%  Similarity=0.304  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHH---HhCCCce---eecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKE---EFGYDDA---FNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||++++|.++++.+...|++|+.++++ ++..+.+.+   +.|....   .|..+.+++.+.+.++.  .++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   96 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK   96 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            38999999999999999999999999999998766 444333322   4454322   24444445555544432  257


Q ss_pred             ceEEEECCchh--------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          235 IDVYLDNVGGK--------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       235 ~d~vld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +|+++.+.|..                          ..+.++..|...|+++.++....
T Consensus        97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~  156 (272)
T d1g0oa_          97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITG  156 (272)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGG
T ss_pred             CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccc
Confidence            99999988721                          23456667788898888876443

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=9.7e-05  Score=57.36  Aligned_cols=74  Identities=19%  Similarity=0.174  Sum_probs=57.4

Q ss_pred             HHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC
Q 042784          155 GIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       155 ~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ++. ..++.++.+|+|.|+ ||.+.+++..++..|+ +|.++.|+.++.+.+.+.++... ++...            ..
T Consensus         8 ~l~-~~~~~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~~------------~~   72 (167)
T d1npya1           8 LIE-KYHLNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY-INSLE------------NQ   72 (167)
T ss_dssp             HHH-HTTCCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE-ESCCT------------TC
T ss_pred             HHH-HcCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh-hhccc------------cc
Confidence            443 455667899999997 9999999999999998 89999999999888876776542 22111            13


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      .+|++++|+.
T Consensus        73 ~~DliINaTp   82 (167)
T d1npya1          73 QADILVNVTS   82 (167)
T ss_dssp             CCSEEEECSS
T ss_pred             chhhheeccc
Confidence            5899999975

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=0.00017  Score=56.14  Aligned_cols=104  Identities=12%  Similarity=0.053  Sum_probs=66.8

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCC
Q 042784          154 VGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       154 ~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      .+|.+..-..+|++|||.|+ ||.+.+++..+...|++|+++.|+.++.+.+.+.+.....+..-.   +    .+....
T Consensus         7 ~~l~~~~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~---~----~~~~~~   78 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALS---M----DELEGH   78 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECC---S----GGGTTC
T ss_pred             HHHHHcCCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccc---c----cccccc
Confidence            44555544567899999997 999999999999999999999999999887775554321121111   0    111224


Q ss_pred             CceEEEECCchhhH----HHHHHhcccCCEEEEEec
Q 042784          234 GIDVYLDNVGGKML----EAVLNHVNVHARIILCGM  265 (356)
Q Consensus       234 ~~d~vld~~g~~~~----~~~~~~l~~~G~~v~~g~  265 (356)
                      .+|++|+|+.-...    ..-...+++...++.+-.
T Consensus        79 ~~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY  114 (170)
T d1nyta1          79 EFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFY  114 (170)
T ss_dssp             CCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCC
T ss_pred             ccceeecccccCcccCCCCCcHHHhccCcEEEEeec
Confidence            68999999853211    111234555555555433

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.65  E-value=0.00012  Score=60.26  Aligned_cols=72  Identities=21%  Similarity=0.319  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +|+++||+||++++|.++++.+...|++|+.++++++..+    +.+... ..|.+  +.+...+.++  +.+|+++.+.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~----~~~~~~~~~Dv~--~~~~~~~~~~--g~iD~lVnnA   74 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RSGHRYVVCDLR--KDLDLLFEKV--KEVDILVLNA   74 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HTCSEEEECCTT--TCHHHHHHHS--CCCSEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH----hcCCcEEEcchH--HHHHHHHHHh--CCCcEEEecc
Confidence            4799999999999999999999999999999998876554    444321 22333  2333333333  4699999988


Q ss_pred             c
Q 042784          243 G  243 (356)
Q Consensus       243 g  243 (356)
                      |
T Consensus        75 G   75 (234)
T d1o5ia_          75 G   75 (234)
T ss_dssp             C
T ss_pred             c
Confidence            7

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.61  E-value=0.00013  Score=60.95  Aligned_cols=77  Identities=22%  Similarity=0.226  Sum_probs=54.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc---eeecCChhhHHHHHHHHC--CCCceEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD---AFNYNSEMSFDAALTKYF--PNGIDVY  238 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~v  238 (356)
                      .+||+||++++|.+.++.+...|++|+.+++++++.+.+.++   .|...   ..|..+..++.+.+.+..  -+++|++
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVI   82 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            469999999999999988888999999999999887766543   34331   234444344444333332  2579999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      ++++|
T Consensus        83 VnnAG   87 (255)
T d1gega_          83 VNNAG   87 (255)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            99987

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.58  E-value=0.00015  Score=60.08  Aligned_cols=80  Identities=11%  Similarity=0.143  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH-HHHHHHHhCCCc---eeecCChhhHHHHHHHHC--CCCceE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN-VKLLKEEFGYDD---AFNYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~-~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      .|+++||+||++++|.++++.+...|++|++.++++++ .+...+++|...   ..|..+..++.+.+.+..  -+++|+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi   83 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            47999999999999999999999999999999976532 233333666532   224444444444333332  157999


Q ss_pred             EEECCc
Q 042784          238 YLDNVG  243 (356)
Q Consensus       238 vld~~g  243 (356)
                      ++++.|
T Consensus        84 lVnnAG   89 (247)
T d2ew8a1          84 LVNNAG   89 (247)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999988

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.57  E-value=6.6e-05  Score=60.74  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=75.0

Q ss_pred             ccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCCh
Q 042784          144 SLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSE  220 (356)
Q Consensus       144 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~  220 (356)
                      .++.+...|. .+ +..++++|++||..|  +|.|..++.+++..|.+|++++..++-.+.+++   .+|.+.+.-... 
T Consensus        60 ~is~P~~~a~-ml-~~L~l~~g~~VLeIG--sGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g-  134 (215)
T d1jg1a_          60 TVSAPHMVAI-ML-EIANLKPGMNILEVG--TGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILG-  134 (215)
T ss_dssp             EECCHHHHHH-HH-HHHTCCTTCCEEEEC--CTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-
T ss_pred             hhhhhhhHHH-HH-HhhccCccceEEEec--CCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC-
Confidence            3444444442 34 467799999999999  677999999999889889999988765555442   567654433221 


Q ss_pred             hhHHHHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          221 MSFDAALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       221 ~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                       +..+...  ..+.||.++.+.+-. .-...++.|+++|+++..
T Consensus       135 -d~~~g~~--~~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         135 -DGSKGFP--PKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             -CGGGCCG--GGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             -ccccCCc--ccCcceeEEeecccccCCHHHHHhcCCCCEEEEE
Confidence             1111000  124699999876654 446678899999999863

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.57  E-value=0.00016  Score=60.37  Aligned_cols=80  Identities=15%  Similarity=0.275  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHH----HHhCCCce---eecCChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD-DNVKLLK----EEFGYDDA---FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~-~~~~~~~----~~~g~~~v---~~~~~~~~~~~~i~~~~--~~  233 (356)
                      .|+++||+||++++|.++++.+...|++|+.+++++ ++.+.+.    +..|....   .|..+..++.+.+.+..  -+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999999999999864 4444333    23454322   24444344444333322  15


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+++++.|
T Consensus        83 ~iDiLVnnAG   92 (260)
T d1x1ta1          83 RIDILVNNAG   92 (260)
T ss_dssp             CCSEEEECCC
T ss_pred             CCcEEEeecc
Confidence            6999999988

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.56  E-value=0.00012  Score=61.16  Aligned_cols=80  Identities=19%  Similarity=0.218  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-HHHHHHH---HhCCCc---eeecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-NVKLLKE---EFGYDD---AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-~~~~~~~---~~g~~~---v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|++++|+||++++|.++++.+...|++|++++++.+ ..+.+.+   +.|...   ..|..+..++.+.+.+..  -++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4899999999999999999999999999999998743 3333322   455431   224444344433333322  157


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        86 iDiLVnnAG   94 (261)
T d1geea_          86 LDVMINNAG   94 (261)
T ss_dssp             CCEEEECCC
T ss_pred             CCEeeccce
Confidence            999999987

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=2.4e-05  Score=64.60  Aligned_cols=98  Identities=18%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCC-----hhhHHHHHHH-HCCCCceEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNS-----EMSFDAALTK-YFPNGIDVY  238 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~-----~~~~~~~i~~-~~~~~~d~v  238 (356)
                      +.+|||+||++++|.+.++.+...|++|+.+++++++....      ........     .....+.+.. +..+.+|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADS------NILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSE------EEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcccc------cceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            45799999999999999999999999999999876432110      00111110     0112222222 234679999


Q ss_pred             EECCch------------h---------------hHHHHHHhcccCCEEEEEecccc
Q 042784          239 LDNVGG------------K---------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       239 ld~~g~------------~---------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +++.|.            +               ..+.++..++++|+++.++....
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~  132 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAA  132 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHh
Confidence            998872            0               11335566788899999887554

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.53  E-value=5.8e-05  Score=62.56  Aligned_cols=101  Identities=7%  Similarity=0.047  Sum_probs=70.1

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      ...+++||++||=.|+  |.|.+++.+|+..|.  +|++++.+++..+.+++.+   +....+.... .++.+.   +..
T Consensus        79 ~~l~i~pG~rVLEiG~--GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~-~Di~~~---~~~  152 (250)
T d1yb2a1          79 MRCGLRPGMDILEVGV--GSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR-SDIADF---ISD  152 (250)
T ss_dssp             --CCCCTTCEEEEECC--TTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC-SCTTTC---CCS
T ss_pred             HHcCCCCcCEEEEeee--eCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE-eeeecc---ccc
Confidence            3578999999999984  457788889988754  9999999999988887533   2222222221 222211   123


Q ss_pred             CCceEEEECCch--hhHHHHHHhcccCCEEEEEe
Q 042784          233 NGIDVYLDNVGG--KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       233 ~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ..||.|+--...  ..+..+.+.|+|+|+++.+.
T Consensus       153 ~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         153 QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             CCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             ceeeeeeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence            469999865555  38899999999999998653

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.53  E-value=0.00011  Score=61.06  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=56.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCC---ceeecCChhh---HHHHHHHHCC-CCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMS---FDAALTKYFP-NGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~---~~~~i~~~~~-~~~  235 (356)
                      .++|||+||++|+|.++++.+...|+  +|+.+++++++.+.+++..+..   ...|..+..+   +.+.+.+..+ .++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            47999999999999999888877886  7999999999988887333332   1224444333   3344444333 369


Q ss_pred             eEEEECCc
Q 042784          236 DVYLDNVG  243 (356)
Q Consensus       236 d~vld~~g  243 (356)
                      |+++.+.|
T Consensus        83 dilinnAG   90 (250)
T d1yo6a1          83 SLLINNAG   90 (250)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEcCc
Confidence            99999988

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=7.1e-05  Score=60.23  Aligned_cols=95  Identities=13%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .++|+|+||+|.+|..++..+...|.+|.++++++++..... ..+.. ++  |..+..++.+.+     .++|+||.++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~~~-~~~gD~~d~~~l~~al-----~~~d~vi~~~   75 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-PRPAH-VVVGDVLQAADVDKTV-----AGQDAVIVLL   75 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS-CCCSE-EEESCTTSHHHHHHHH-----TTCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccc-ccccc-cccccccchhhHHHHh-----cCCCEEEEEe
Confidence            578999999999999999988888999999999888765443 33332 23  343333333333     3589999998


Q ss_pred             chh-----------hHHHHHHhcccC--CEEEEEecc
Q 042784          243 GGK-----------MLEAVLNHVNVH--ARIILCGMI  266 (356)
Q Consensus       243 g~~-----------~~~~~~~~l~~~--G~~v~~g~~  266 (356)
                      |..           ....+++.++..  .+++.++..
T Consensus        76 g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~  112 (205)
T d1hdoa_          76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (205)
T ss_dssp             CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             ccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeee
Confidence            742           123344444443  477777543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.50  E-value=0.00019  Score=59.94  Aligned_cols=106  Identities=22%  Similarity=0.271  Sum_probs=69.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHH---HhCCCce---eecCChhhHHHHHHHHC--CC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLKE---EFGYDDA---FNYNSEMSFDAALTKYF--PN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~i~~~~--~~  233 (356)
                      -.|+++||+||++++|.++++.+...|++|+.++++ ++..+.+.+   +.|....   .|..+..+..+.+.+..  -+
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            458999999999999999999999999999887544 444444332   4565422   24444334444343322  24


Q ss_pred             CceEEEECCchh--------------------------hHHHHHHhcccCCEEEEEecccc
Q 042784          234 GIDVYLDNVGGK--------------------------MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       234 ~~d~vld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ++|+++.+.|..                          ..+.++..++.+|.++.+.....
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~  144 (259)
T d1ja9a_          84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAA  144 (259)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccc
Confidence            699999988831                          22456667778888877765443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.50  E-value=0.00012  Score=59.47  Aligned_cols=111  Identities=12%  Similarity=0.078  Sum_probs=71.8

Q ss_pred             cCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHH
Q 042784          145 LGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFD  224 (356)
Q Consensus       145 l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~  224 (356)
                      ++.+...|. .+ +..++++|++||-.|  .|.|..++.+++. +.+|++++.+++..+.+++.+....-+.... .+..
T Consensus        53 ~~~p~~~a~-ml-~~L~l~~g~~VLdIG--~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~-~d~~  126 (224)
T d1vbfa_          53 TTALNLGIF-ML-DELDLHKGQKVLEIG--TGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLIL-GDGT  126 (224)
T ss_dssp             ECCHHHHHH-HH-HHTTCCTTCEEEEEC--CTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEE-SCGG
T ss_pred             eehhhhHHH-HH-HHhhhcccceEEEec--CCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhccccccccc-Cchh
Confidence            333444443 34 567899999999999  4578888878876 5699999999998888875444321111111 1111


Q ss_pred             HHHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          225 AALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      ....+  .+.||.|+-+.+.+ .....++.|+++|++|..
T Consensus       127 ~g~~~--~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         127 LGYEE--EKPYDRVVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GCCGG--GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hcchh--hhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence            00011  24699998766654 445677899999999864

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=0.00013  Score=59.11  Aligned_cols=99  Identities=18%  Similarity=0.154  Sum_probs=68.3

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~  232 (356)
                      +..++++|++||-.|+  |.|..++.+++..|.  +|++++.+++..+.+++.   .+...+.-..  .+..+..  ...
T Consensus        69 ~~l~l~~g~~VLdiG~--GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~--~d~~~~~--~~~  142 (213)
T d1dl5a1          69 EWVGLDKGMRVLEIGG--GTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC--GDGYYGV--PEF  142 (213)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE--SCGGGCC--GGG
T ss_pred             HhhhccccceEEEecC--ccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccccccccc--CchHHcc--ccc
Confidence            5678999999999994  458888899998764  899999999888777643   2333222111  1111100  012


Q ss_pred             CCceEEEECCchh-hHHHHHHhcccCCEEEE
Q 042784          233 NGIDVYLDNVGGK-MLEAVLNHVNVHARIIL  262 (356)
Q Consensus       233 ~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~  262 (356)
                      +.||+|+.+.+-. ..+..++.|+|+|+++.
T Consensus       143 ~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPETWFTQLKEGGRVIV  173 (213)
T ss_dssp             CCEEEEEECSBBSCCCHHHHHHEEEEEEEEE
T ss_pred             cchhhhhhhccHHHhHHHHHHhcCCCcEEEE
Confidence            4699999887654 34667889999999986

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.47  E-value=0.00032  Score=59.91  Aligned_cols=105  Identities=26%  Similarity=0.278  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC---------hHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS---------DDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s---------~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      .|+++||+||++|+|.+.++.+...|++|++.+++         ++..+.+.++   .+.....|..+..+..+.+.+..
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            48999999999999999999999999999998643         3333333222   33444556555444444343322


Q ss_pred             --CCCceEEEECCchh--------------------------hHHHHHHhc--ccCCEEEEEecccc
Q 042784          232 --PNGIDVYLDNVGGK--------------------------MLEAVLNHV--NVHARIILCGMISQ  268 (356)
Q Consensus       232 --~~~~d~vld~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~~~  268 (356)
                        -+++|+++++.|..                          ..+.++..|  +.+|++|.++...+
T Consensus        86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~  152 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASG  152 (302)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhh
Confidence              25799999998820                          123345555  34589999887554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00015  Score=60.99  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=40.6

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE  207 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~  207 (356)
                      -.|+++||+||++|+|.++++.+...|++|+.+++++++.+.+.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            358999999999999999999999999999999999998877654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.45  E-value=7.3e-05  Score=62.37  Aligned_cols=81  Identities=19%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH---HHhCCCce----eecC-ChhhHHHHHHHHC--CC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK---EEFGYDDA----FNYN-SEMSFDAALTKYF--PN  233 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~---~~~g~~~v----~~~~-~~~~~~~~i~~~~--~~  233 (356)
                      .|++|||+||++|+|.+++..+...|++|++++++.++.+.+.   ...+...+    .|.. +..++.+.+.++.  -+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence            4899999999999999999999999999888877665544333   12332212    2332 2122333333322  14


Q ss_pred             CceEEEECCch
Q 042784          234 GIDVYLDNVGG  244 (356)
Q Consensus       234 ~~d~vld~~g~  244 (356)
                      ++|+++.++|.
T Consensus        84 ~iDilvnnAG~   94 (254)
T d1sbya1          84 TVDILINGAGI   94 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEeCCCC
Confidence            79999999984

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=1.6e-05  Score=65.79  Aligned_cols=75  Identities=21%  Similarity=0.247  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC--CCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF--PNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~--~~~~d~vld~  241 (356)
                      .|+++||+||++++|.++++.+...|++|+++++++++.+.+. .    ...|..+..++.+.+.+..  -+++|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~-~----~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-G----VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE-E----EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCce-E----EEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            5899999999999999999999999999999998876544222 1    1234444344433333322  1469999998


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      +|
T Consensus        81 AG   82 (237)
T d1uzma1          81 AG   82 (237)
T ss_dssp             CS
T ss_pred             ec
Confidence            87

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=0.00057  Score=56.76  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCChHHHHHHH---HHhCCCcee--ecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK---EEFGYDDAF--NYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~---~~~g~~~v~--~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||+|  |+|.++++.+...|++|+...++++..+.++   +..+....+  |..+..++.+.+.+..  -++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            489999999987  8999999999999999999998876544433   133433333  3344333333333321  257


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++++.|
T Consensus        87 iDilVnnag   95 (256)
T d1ulua_          87 LDYLVHAIA   95 (256)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEeccc
Confidence            999999886

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.27  E-value=0.0029  Score=46.49  Aligned_cols=75  Identities=19%  Similarity=0.150  Sum_probs=56.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +|+|.|+ |.+|...++.+...|..|++++.++++.+.++++++.. ++..+  ..-.+.+++..-..+|.++.+++++
T Consensus         2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~-vi~Gd--~~~~~~l~~~~i~~a~~vv~~t~~d   76 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL-VINGD--CTKIKTLEDAGIEDADMYIAVTGKE   76 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE-EEESC--TTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh-hccCc--ccchhhhhhcChhhhhhhcccCCcH
Confidence            6899997 99999999999999999999999999999888666654 44222  1122234443324699999998875

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.27  E-value=0.001  Score=55.64  Aligned_cols=80  Identities=13%  Similarity=0.181  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHHhCCCcee--ecCChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGSDD---NVKLLKEEFGYDDAF--NYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s~~---~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||+|  ++|.++++.+...|++|+.++++++   +.+.+.++.+...++  |..+..+..+.+.+..  -+.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~   83 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   83 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcCC
Confidence            489999999876  7999999999999999999998764   333334233333333  3333333333333322  256


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        84 id~lV~nag   92 (274)
T d2pd4a1          84 LDFIVHSVA   92 (274)
T ss_dssp             EEEEEECCC
T ss_pred             CCeEEeecc
Confidence            999999887

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.26  E-value=9.9e-05  Score=61.47  Aligned_cols=77  Identities=17%  Similarity=0.084  Sum_probs=53.6

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      .|+||+|+++++|++++..+...|++|++.+++.++.+.++.   .+....+.+..+...+.+.+.+.. +++|+++++.
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~-G~iDiLVnNA   79 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAY-GQVDVLVSND   79 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHH-SCCCEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHc-CCCCEEEECC
Confidence            378999999999999999999999999999988877776652   222222333333334444444332 4699999876


Q ss_pred             c
Q 042784          243 G  243 (356)
Q Consensus       243 g  243 (356)
                      |
T Consensus        80 g   80 (252)
T d1zmta1          80 I   80 (252)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00053  Score=56.66  Aligned_cols=49  Identities=14%  Similarity=0.213  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD  212 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~  212 (356)
                      +|+++||+||++++|.++++.+...|++|+.+++++++.+.+.++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence            5899999999999999999999999999999999998888777688764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00028  Score=58.26  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=72.0

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHH
Q 042784          153 WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       153 ~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~  229 (356)
                      +..+....+++||++||=.|.  |.|..+..+++..|++|++++.|++..+.+++   ..|....++... .++    .+
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGC--G~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~-~d~----~~   94 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGS--GSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH-NDA----AG   94 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETC--TTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-SCC----TT
T ss_pred             HHHHHHHcCCCCCCEEEEEcC--CCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhh-hHH----hh
Confidence            445667889999999999984  45667788888889999999999988777663   345432222111 121    11


Q ss_pred             HC-CCCceEEEECCc-----h--hhHHHHHHhcccCCEEEEE
Q 042784          230 YF-PNGIDVYLDNVG-----G--KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       230 ~~-~~~~d~vld~~g-----~--~~~~~~~~~l~~~G~~v~~  263 (356)
                      +. .+.||+|+..-.     +  ..+..+.+.|+|+|+++..
T Consensus        95 ~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_          95 YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             ccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence            22 357999986322     1  3778888999999998864

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.21  E-value=0.0011  Score=55.13  Aligned_cols=82  Identities=18%  Similarity=0.203  Sum_probs=55.2

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHH-------HHHHHHHhCCCc---eeecCChhhHHHHHHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDN-------VKLLKEEFGYDD---AFNYNSEMSFDAALTK  229 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~-------~~~~~~~~g~~~---v~~~~~~~~~~~~i~~  229 (356)
                      .++|+.++||+||+|++|+++++.+...|+ +|+.+.++..+       .+.++ ..|...   ..|..+..++.+.+.+
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~-~~g~~v~~~~~Dv~d~~~~~~~~~~   83 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELE-ALGARTTVAACDVTDRESVRELLGG   83 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHH-hccccccccccccchHHHHHHhhcc
Confidence            478999999999999999999988888899 67777765322       22333 456531   2244443444444444


Q ss_pred             HC-CCCceEEEECCc
Q 042784          230 YF-PNGIDVYLDNVG  243 (356)
Q Consensus       230 ~~-~~~~d~vld~~g  243 (356)
                      +. ...+|.++.+.|
T Consensus        84 i~~~~~i~~vv~~ag   98 (259)
T d2fr1a1          84 IGDDVPLSAVFHAAA   98 (259)
T ss_dssp             SCTTSCEEEEEECCC
T ss_pred             ccccccccccccccc
Confidence            43 236999999887

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.19  E-value=0.00022  Score=59.06  Aligned_cols=78  Identities=12%  Similarity=0.193  Sum_probs=51.8

Q ss_pred             CEEEEEcCCChHHHHHHHHHH---HCCCEEEEEeCChHHHHHHHH--HhCCC---ceeecCChhh---HHHHHHHHC-CC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAK---LKGCKVVGSTGSDDNVKLLKE--EFGYD---DAFNYNSEMS---FDAALTKYF-PN  233 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~---~~G~~V~~~~~s~~~~~~~~~--~~g~~---~v~~~~~~~~---~~~~i~~~~-~~  233 (356)
                      ++|||+||++|+|.++++.+.   ..|++|+++++++++.+.+++  +.+..   ...|..+..+   +.+.+++.. .+
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            589999999999999876553   458899999999887665542  12222   1234444333   344444333 35


Q ss_pred             CceEEEECCc
Q 042784          234 GIDVYLDNVG  243 (356)
Q Consensus       234 ~~d~vld~~g  243 (356)
                      ++|+++++.|
T Consensus        83 ~iDiLvnNAg   92 (248)
T d1snya_          83 GLNVLFNNAG   92 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CcceEEeecc
Confidence            7999999877

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00082  Score=54.56  Aligned_cols=97  Identities=16%  Similarity=0.187  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHh---CC-----CceeecCChhhHHHHHHHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEF---GY-----DDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~---g~-----~~v~~~~~~~~~~~~i~~~  230 (356)
                      ++++|++||-.|  .|.|..++.+|+..|.  +|++++.+++-.+.+++.+   +.     ..+....  .+.....  .
T Consensus        73 ~l~~g~~VLdiG--~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~--gD~~~~~--~  146 (224)
T d1i1na_          73 QLHEGAKALDVG--SGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV--GDGRMGY--A  146 (224)
T ss_dssp             TSCTTCEEEEET--CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE--SCGGGCC--G
T ss_pred             ccCCCCeEEEec--CCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE--eeccccc--c
Confidence            789999999999  5678888899998764  9999999988777765432   21     1111000  0110000  0


Q ss_pred             CCCCceEEEECCchh-hHHHHHHhcccCCEEEEE
Q 042784          231 FPNGIDVYLDNVGGK-MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       231 ~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  263 (356)
                      ....||.|+.+.+-. ..+..++.|+|+|+++..
T Consensus       147 ~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         147 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             GGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            024699999877654 456788999999999863

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.0021  Score=50.25  Aligned_cols=107  Identities=14%  Similarity=0.156  Sum_probs=66.2

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHH---HHhC----C-CceeecCChhhHH
Q 042784          154 VGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLK---EEFG----Y-DDAFNYNSEMSFD  224 (356)
Q Consensus       154 ~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~---~~~g----~-~~v~~~~~~~~~~  224 (356)
                      +++.+...--.+.+|+|.|+ |+.+.+++..+...|+ +++.+.+++++.+.+.   ++++    . ....+..+...+.
T Consensus         7 ~~l~~~~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFA   85 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred             HHHHHcCCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchh
Confidence            44544432246789999997 9999999998888999 8999998766544332   1222    1 1233444333444


Q ss_pred             HHHHHHCCCCceEEEECCchh-------hHHHHHHhcccCCEEEEEecc
Q 042784          225 AALTKYFPNGIDVYLDNVGGK-------MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~g~~-------~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +.+.     .+|++|+|+.-.       .+..-+..++++..++.+-..
T Consensus        86 ~~~~-----~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~  129 (182)
T d1vi2a1          86 EALA-----SADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYN  129 (182)
T ss_dssp             HHHH-----TCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCS
T ss_pred             hhhc-----ccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcC
Confidence            4433     389999998632       111123456777777776543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.13  E-value=0.00076  Score=55.41  Aligned_cols=102  Identities=14%  Similarity=0.157  Sum_probs=67.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCE-------EEEEeCChHHHHHHHHHh---CCC---ceeecCChhhHHHHHHHHC--
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCK-------VVGSTGSDDNVKLLKEEF---GYD---DAFNYNSEMSFDAALTKYF--  231 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~-------V~~~~~s~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~i~~~~--  231 (356)
                      -|||+||++|+|.+++..+...|++       |+..++++++.+.+.+++   |..   ...|..+..++.+.+.+..  
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            3789999999999999888888886       888999988877665443   332   1224555344333333322  


Q ss_pred             CCCceEEEECCch-----------h---------------hHHHHHHhcc--cCCEEEEEecccc
Q 042784          232 PNGIDVYLDNVGG-----------K---------------MLEAVLNHVN--VHARIILCGMISQ  268 (356)
Q Consensus       232 ~~~~d~vld~~g~-----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  268 (356)
                      -+++|+++++.|.           +               ..+.++..|+  .+|+++.++...+
T Consensus        83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~  147 (240)
T d2bd0a1          83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAA  147 (240)
T ss_dssp             TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhh
Confidence            2479999999872           1               1233455553  4689998876554

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00033  Score=60.16  Aligned_cols=104  Identities=15%  Similarity=0.176  Sum_probs=67.3

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-------------CCceeecCChhh
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFG-------------YDDAFNYNSEMS  222 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g-------------~~~v~~~~~~~~  222 (356)
                      ...+++||++||=.|  .|.|.+++.+|+..|.  +|+.++.+++..+.+++.+-             ....++... .+
T Consensus        92 ~~l~i~pG~rVLE~G--tGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~-~d  168 (324)
T d2b25a1          92 SMMDINPGDTVLEAG--SGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH-KD  168 (324)
T ss_dssp             HHHTCCTTCEEEEEC--CTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE-SC
T ss_pred             HHhCCCCCCEEEEec--ccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe-cc
Confidence            357899999999888  4559999999999875  89999999998888764321             001111110 11


Q ss_pred             HHHHHHHHCCCCceEEEECCch--hhHHHHHHhcccCCEEEEEe
Q 042784          223 FDAALTKYFPNGIDVYLDNVGG--KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g  264 (356)
                      +.+....+....||.||--...  ..+.++.+.|+|+|+++.+.
T Consensus       169 i~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         169 ISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             TTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             hhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            1111111122458988754444  37889999999999998764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.0022  Score=54.03  Aligned_cols=104  Identities=13%  Similarity=0.067  Sum_probs=71.2

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHH
Q 042784          153 WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       153 ~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~  229 (356)
                      ..-+.+.+++++|++||=+|.  |.|-.++.+|+..|++|++++.|++..+.+++   ..|....+.... .++    + 
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGC--G~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~-~d~----~-  121 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGC--GWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI-QGW----E-  121 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE-CCG----G-
T ss_pred             HHHHHHhcCCCCCCEEEEecC--cchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhh-hcc----c-
Confidence            444556789999999999994  45667889999999999999999988666543   345433322211 111    1 


Q ss_pred             HCCCCceEEEEC-----Cch-----------hhHHHHHHhcccCCEEEEEe
Q 042784          230 YFPNGIDVYLDN-----VGG-----------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       230 ~~~~~~d~vld~-----~g~-----------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ...+.||.|+..     ++.           ..+..+.+.|+|+|+++.-.
T Consensus       122 ~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         122 EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            123569988742     221           25788899999999988543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.0019  Score=54.29  Aligned_cols=104  Identities=11%  Similarity=0.030  Sum_probs=71.6

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHH
Q 042784          153 WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       153 ~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~  229 (356)
                      ...+.+..++++|++||=+|  .|.|..++.+|+..|++|++++.|++..+.+++.   .|....+.... .++    ++
T Consensus        51 ~~~~~~~l~l~~G~~VLDiG--CG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~-~d~----~~  123 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVG--CGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL-AGW----EQ  123 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEET--CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE-SCG----GG
T ss_pred             HHHHHHHcCCCCCCEEEEec--CcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH-hhh----hc
Confidence            34455678899999999999  4678889999999999999999999988877642   23222121111 121    11


Q ss_pred             HCCCCceEEEE-----CCch----hhHHHHHHhcccCCEEEEEe
Q 042784          230 YFPNGIDVYLD-----NVGG----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       230 ~~~~~~d~vld-----~~g~----~~~~~~~~~l~~~G~~v~~g  264 (356)
                      + ++.+|.|+.     .+|.    ..+..+.+.|+|+|+++.-.
T Consensus       124 ~-~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         124 F-DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             C-CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             c-cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence            1 346888764     3332    26778889999999988543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00023  Score=59.30  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=72.0

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHh---C---CCceeecCChhhHHHHH
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEF---G---YDDAFNYNSEMSFDAAL  227 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~---g---~~~v~~~~~~~~~~~~i  227 (356)
                      +....+++||++||=.|  .|.|.+++.+|+..|.  +|+.++.+++..+.+++.+   +   .+.+....  .+..+  
T Consensus        88 Ii~~l~i~PG~~VLE~G--~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~--~d~~~--  161 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAG--AGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV--SDLAD--  161 (264)
T ss_dssp             HHHHTTCCTTCEEEEEC--CTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC--SCGGG--
T ss_pred             HHHHhCCCCCCEEEecC--cCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe--ccccc--
Confidence            33468899999999888  5678899999999875  9999999999988887422   1   12221111  12111  


Q ss_pred             HHHCCCCceEEEECCch--hhHHHHHHhcccCCEEEEEe
Q 042784          228 TKYFPNGIDVYLDNVGG--KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       228 ~~~~~~~~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ..+..+.||.||--...  ..+..+.+.|+|+|+++.+-
T Consensus       162 ~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         162 SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            01123469988765555  38889999999999998764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.02  E-value=0.0027  Score=49.34  Aligned_cols=90  Identities=19%  Similarity=0.096  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee-------ecCC--hhhHHHHHHHHCCCCc
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF-------NYNS--EMSFDAALTKYFPNGI  235 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~-------~~~~--~~~~~~~i~~~~~~~~  235 (356)
                      ..++.|.|+ |.+|++.+..+...|.+|.+.++++++.+.++ +.+.....       ....  ..+..+.+     +.+
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~a   73 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-DRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----KDA   73 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HHTSEEEESSSCCEEECCSEEESCHHHHH-----TTC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCCchhhhhhhhhhhhhhhhhhhHhHh-----cCC
Confidence            368999997 99999999999999999999999999999888 55532110       0000  02344444     348


Q ss_pred             eEEEECCchhhHHHHH----HhcccCCEEE
Q 042784          236 DVYLDNVGGKMLEAVL----NHVNVHARII  261 (356)
Q Consensus       236 d~vld~~g~~~~~~~~----~~l~~~G~~v  261 (356)
                      |++|-++........+    ..+.++..++
T Consensus        74 D~iii~v~~~~~~~~~~~i~~~l~~~~~iv  103 (184)
T d1bg6a2          74 DVILIVVPAIHHASIAANIASYISEGQLII  103 (184)
T ss_dssp             SEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             CEEEEEEchhHHHHHHHHhhhccCCCCEEE
Confidence            9999999876444444    4455555444

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.0024  Score=52.65  Aligned_cols=96  Identities=21%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCceEE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      .++|++||=.|. | .|..++.+++ .|++|++++.+++..+.+++   ..|....+..   .++.+.+   ..+.||+|
T Consensus       118 ~~~g~~VLDiGc-G-sG~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~---~d~~~~~---~~~~fD~V  188 (254)
T d2nxca1         118 LRPGDKVLDLGT-G-SGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLE---GSLEAAL---PFGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETC-T-TSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEE---SCHHHHG---GGCCEEEE
T ss_pred             cCccCEEEEccc-c-hhHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCCceeEEe---ccccccc---cccccchh
Confidence            578999999985 4 4667776554 68999999999988877763   3444322222   2233222   23579999


Q ss_pred             EECCchh----hHHHHHHhcccCCEEEEEecc
Q 042784          239 LDNVGGK----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       239 ld~~g~~----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +.+....    .+..+.+.|+|+|++++.|..
T Consensus       189 ~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         189 VANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            9766543    556778899999999976553

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.01  E-value=0.0008  Score=55.43  Aligned_cols=102  Identities=22%  Similarity=0.244  Sum_probs=66.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEe-CChHHHHHHHH---HhCCC---ceeecCChhhHHHHHHHHC--CCCceE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGST-GSDDNVKLLKE---EFGYD---DAFNYNSEMSFDAALTKYF--PNGIDV  237 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~-~s~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~i~~~~--~~~~d~  237 (356)
                      .+||+||++++|.++++.+...|++|+..+ ++++..+.+.+   ++|..   ...|..+..++.+.+.+..  -+++|+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV   82 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence            579999999999999999999999998875 45555554432   34542   1224444344444333322  257999


Q ss_pred             EEECCchh--------------------------hHHHHHHhc--ccCCEEEEEecccc
Q 042784          238 YLDNVGGK--------------------------MLEAVLNHV--NVHARIILCGMISQ  268 (356)
Q Consensus       238 vld~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~~~  268 (356)
                      ++++.|..                          ..+.++..|  +.+|+++.++...+
T Consensus        83 LVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~  141 (244)
T d1edoa_          83 VVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVG  141 (244)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHH
T ss_pred             cccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhh
Confidence            99998721                          123455555  45799999887554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.97  E-value=0.0039  Score=48.07  Aligned_cols=96  Identities=11%  Similarity=0.120  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCC--hhhHHHHHHHHCCCCceEEEEC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNS--EMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~--~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      ++++|+|.|+ |.+|..+++.+...|.+|++++++.++.+.+.+.++.........  .......+     ...|.++.+
T Consensus         1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~i~~   74 (182)
T d1e5qa1           1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEV-----AKHDLVISL   74 (182)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHH-----TTSSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhh-----hccceeEee
Confidence            3689999997 999999999998889999999999999999885555432221111  11122222     246888887


Q ss_pred             Cchh-hHHHHHHhcccCCEEEEEec
Q 042784          242 VGGK-MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       242 ~g~~-~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .... .......+++.+-.++....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
T d1e5qa1          75 IPYTFHATVIKSAIRQKKHVVTTSY   99 (182)
T ss_dssp             SCGGGHHHHHHHHHHHTCEEECSSC
T ss_pred             ccchhhhHHHHHHHhhccceeeccc
Confidence            7664 44444556666667665543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.003  Score=47.83  Aligned_cols=105  Identities=18%  Similarity=0.164  Sum_probs=75.6

Q ss_pred             hhHHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHH
Q 042784          150 FAAWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALT  228 (356)
Q Consensus       150 ~ta~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~  228 (356)
                      .+.+.++.+. ...-.|++|+|.|- |-+|...++.++.+|++|++++..+-+.-.+. .-|.. +.      .+.+.+ 
T Consensus         8 ~S~~~~~~r~t~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-~dG~~-v~------~~~~a~-   77 (163)
T d1li4a1           8 ESLIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPINALQAA-MEGYE-VT------TMDEAC-   77 (163)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC------CHHHHT-
T ss_pred             hhHHHHHHHHhCceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccchhHHhh-cCceE-ee------ehhhhh-
Confidence            3455555543 34568999999995 99999999999999999999998776544443 32332 22      233333 


Q ss_pred             HHCCCCceEEEECCchh--hHHHHHHhcccCCEEEEEecccc
Q 042784          229 KYFPNGIDVYLDNVGGK--MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       229 ~~~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                          ...|+++-++|..  .-.+.++.|+++..++.+|-...
T Consensus        78 ----~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd~  115 (163)
T d1li4a1          78 ----QEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDV  115 (163)
T ss_dssp             ----TTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSSTT
T ss_pred             ----hhccEEEecCCCccchhHHHHHhccCCeEEEEeccccc
Confidence                2379999999985  44678889999998888876543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.94  E-value=0.001  Score=54.29  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             HHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC
Q 042784          155 GIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       155 ~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      .+.+.+.+++|++||=.|+  |.|..+..+++. +.+|++++.|+...+.+++.   .|...+.-..  .+..+ + .+.
T Consensus         7 ~l~~~~~~~~~~rILDiGc--GtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~--~d~~~-~-~~~   79 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGA--GAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQ--GTAES-L-PFP   79 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESC--TTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEE--CBTTB-C-CSC
T ss_pred             HHHHHhCCCCCCEEEEeCC--cCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccccccccc--ccccc-c-ccc
Confidence            3556788999999999994  567777788774 68999999999887776532   3333221111  11110 0 112


Q ss_pred             CCCceEEEECCch-------hhHHHHHHhcccCCEEEEEe
Q 042784          232 PNGIDVYLDNVGG-------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       232 ~~~~d~vld~~g~-------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      .+.||+|+.+..-       ..+..+.+.|+|+|+++..-
T Consensus        80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            3569999975432       26889999999999988753

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.93  E-value=0.0022  Score=50.26  Aligned_cols=100  Identities=19%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCc
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ..++++|++||=.|+  |.|..++.+|+. +.+|++++.+++..+.+++   .+|...-+.... .+..+....  ...+
T Consensus        28 ~l~~~~g~~VLDiGc--GsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~-gda~~~~~~--~~~~  101 (186)
T d1l3ia_          28 LAEPGKNDVAVDVGC--GTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME-GDAPEALCK--IPDI  101 (186)
T ss_dssp             HHCCCTTCEEEEESC--TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE-SCHHHHHTT--SCCE
T ss_pred             hcCCCCCCEEEEEEC--CeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEE-Cchhhcccc--cCCc
Confidence            457899999998884  456666777764 5699999999988877764   355432222211 233333221  2479


Q ss_pred             eEEEECCch----hhHHHHHHhcccCCEEEEEe
Q 042784          236 DVYLDNVGG----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       236 d~vld~~g~----~~~~~~~~~l~~~G~~v~~g  264 (356)
                      |+|+...+.    +.++.+.+.|+|+|+++...
T Consensus       102 D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         102 DIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             EEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEEeCccccchHHHHHHHHHhCcCCEEEEEe
Confidence            999876543    36788889999999988654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.0013  Score=54.70  Aligned_cols=80  Identities=21%  Similarity=0.248  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCChHHHHHHH-HHHH--CCCEEEEEeCChHHHHHHHHHhC----CCce----eecCChhh---HHHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQ-LAKL--KGCKVVGSTGSDDNVKLLKEEFG----YDDA----FNYNSEMS---FDAALTK  229 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~-la~~--~G~~V~~~~~s~~~~~~~~~~~g----~~~v----~~~~~~~~---~~~~i~~  229 (356)
                      .|+.++|+||++|+|.++++ ||+.  .|++|+.+++++++.+.+.+++.    ...+    .|..+..+   +.+.+.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            47889999999999998765 5553  68999999999998877764432    1112    24444333   3333444


Q ss_pred             HC---CCCceEEEECCc
Q 042784          230 YF---PNGIDVYLDNVG  243 (356)
Q Consensus       230 ~~---~~~~d~vld~~g  243 (356)
                      ..   +...|+++.+.|
T Consensus        85 ~~~~~~~~~~~lvnnag  101 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             hhhhccCceEEEEeccc
Confidence            32   236788888765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.89  E-value=0.0014  Score=53.09  Aligned_cols=70  Identities=21%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      .||||+||+|.+|..++..+...|.  .|+...+++++.+.+. . +.. ++  |..+..++.+.+     +++|.|+.+
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~-~-~~~-~~~~d~~~~~~~~~~~-----~~~d~vi~~   75 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG-G-EAD-VFIGDITDADSINPAF-----QGIDALVIL   75 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT-C-CTT-EEECCTTSHHHHHHHH-----TTCSEEEEC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc-C-CcE-EEEeeecccccccccc-----ccceeeEEE
Confidence            5899999999999999999988885  6777788877665443 1 222 22  333323333333     358999988


Q ss_pred             Cc
Q 042784          242 VG  243 (356)
Q Consensus       242 ~g  243 (356)
                      .+
T Consensus        76 a~   77 (252)
T d2q46a1          76 TS   77 (252)
T ss_dssp             CC
T ss_pred             Ee
Confidence            75

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.86  E-value=0.0021  Score=49.65  Aligned_cols=102  Identities=12%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             HHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCC
Q 042784          155 GIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       155 ~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ++.+..-..++.+|+|.|+ |+.+.+++..+...+.+|+++.|+.++.+.+.+.++.. .+....  .+      +..-.
T Consensus         8 ~l~~~~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~--~~------~~~~~   78 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVS--MD------SIPLQ   78 (171)
T ss_dssp             HHHHTTCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEE--GG------GCCCS
T ss_pred             HHHHcCCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhh--hc------ccccc
Confidence            3444333457899999997 99999998888776679999999999988887666531 111111  00      11124


Q ss_pred             CceEEEECCchhhHH----HHHHhcccCCEEEEEec
Q 042784          234 GIDVYLDNVGGKMLE----AVLNHVNVHARIILCGM  265 (356)
Q Consensus       234 ~~d~vld~~g~~~~~----~~~~~l~~~G~~v~~g~  265 (356)
                      .+|++|+|+......    .....+++...++.+-.
T Consensus        79 ~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy  114 (171)
T d1p77a1          79 TYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQY  114 (171)
T ss_dssp             CCSEEEECCCC-------CCCHHHHHHCSCEEESCC
T ss_pred             ccceeeecccccccccccchhhhhhcccceeeeeec
Confidence            689999998743111    11233555666665544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.85  E-value=0.0022  Score=53.76  Aligned_cols=103  Identities=12%  Similarity=0.093  Sum_probs=69.8

Q ss_pred             HHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHH
Q 042784          153 WVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTK  229 (356)
Q Consensus       153 ~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~  229 (356)
                      +..+.+..++++|++||=.|.  |.|..+..+++..|++|++++.|++..+.+++.   .|....+.... .+.    ++
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGC--G~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~-~d~----~~  113 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGC--GWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL-QGW----ED  113 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE-SCG----GG
T ss_pred             HHHHHHHcCCCCCCEEEEecC--CchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhh-hhh----hh
Confidence            445666788999999999994  344567788999999999999999998877643   23321221110 111    11


Q ss_pred             HCCCCceEEEE-----CCchh----hHHHHHHhcccCCEEEEE
Q 042784          230 YFPNGIDVYLD-----NVGGK----MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       230 ~~~~~~d~vld-----~~g~~----~~~~~~~~l~~~G~~v~~  263 (356)
                      + .+.+|.|+-     .++.+    .+..+.+.|+|+|+++.-
T Consensus       114 ~-~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         114 F-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             C-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             h-ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence            1 346888864     23322    578889999999999864

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.83  E-value=0.0037  Score=48.97  Aligned_cols=98  Identities=16%  Similarity=0.115  Sum_probs=65.9

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceee---------cC-------ChhhH
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFN---------YN-------SEMSF  223 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~---------~~-------~~~~~  223 (356)
                      ..+.+|.+||..|.  |.|..++.+|+. |++|++++.|+...+.+++..+......         ..       +..++
T Consensus        16 l~~~~~~rvLd~GC--G~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l   92 (201)
T d1pjza_          16 LNVVPGARVLVPLC--GKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   92 (201)
T ss_dssp             HCCCTTCEEEETTT--CCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             cCCCCCCEEEEecC--cCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc
Confidence            45899999999995  467888888875 9999999999999999986544321110         00       00011


Q ss_pred             HHHHHHHCCCCceEEEECCch---------hhHHHHHHhcccCCEEEEEe
Q 042784          224 DAALTKYFPNGIDVYLDNVGG---------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       224 ~~~i~~~~~~~~d~vld~~g~---------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ....    ...+|+|++...-         ..+....+.|+|+|.++...
T Consensus        93 ~~~~----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          93 TARD----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             THHH----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccc----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            1011    1248999885431         25677889999999977543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.83  E-value=0.0075  Score=45.96  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=60.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +|.|.|. |.+|...+..++..|.+|++.++++++.+.++ +.|.. ...+..  +    .+     +.+|+||-|+...
T Consensus         2 kI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~-~~~~~~~~~~~~--~----~~-----~~~DiIilavp~~   68 (165)
T d2f1ka2           2 KIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQLVDEAGQDL--S----LL-----QTAKIIFLCTPIQ   68 (165)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTSCSEEESCG--G----GG-----TTCSEEEECSCHH
T ss_pred             EEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHH-Hhhccceeeeec--c----cc-----cccccccccCcHh
Confidence            5889996 99999888888899999999999999999888 77753 222211  1    11     3589999998765


Q ss_pred             ----hHHHHHHhcccCCEEEEEec
Q 042784          246 ----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       246 ----~~~~~~~~l~~~G~~v~~g~  265 (356)
                          .+++....++++..++.++.
T Consensus        69 ~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          69 LILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             HHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             hhhhhhhhhhhhcccccceeeccc
Confidence                34444445556666655543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.83  E-value=0.0015  Score=52.78  Aligned_cols=96  Identities=13%  Similarity=0.177  Sum_probs=59.9

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHC---C----CEEEEEeCChHHHHHHHHHh--------CCCceeecCChhhHHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLK---G----CKVVGSTGSDDNVKLLKEEF--------GYDDAFNYNSEMSFDA  225 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~---G----~~V~~~~~s~~~~~~~~~~~--------g~~~v~~~~~~~~~~~  225 (356)
                      .+++|++||..|  ++.|..++.+++..   |    .+|+.++..++-.+.+++.+        +...+....  .+..+
T Consensus        77 ~l~~g~~VLeIG--tGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~--~d~~~  152 (223)
T d1r18a_          77 HLKPGARILDVG--SGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE--GDGRK  152 (223)
T ss_dssp             TCCTTCEEEEES--CTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE--SCGGG
T ss_pred             ccCCCCeEEEec--CCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe--ccccc
Confidence            789999999999  45566666665544   4    38999998887666654321        221121111  11100


Q ss_pred             HHHHHCCCCceEEEECCchh-hHHHHHHhcccCCEEEE
Q 042784          226 ALTKYFPNGIDVYLDNVGGK-MLEAVLNHVNVHARIIL  262 (356)
Q Consensus       226 ~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~  262 (356)
                      ...  ..+.||.|+-+.+-+ ..+..++.|+++|+++.
T Consensus       153 ~~~--~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         153 GYP--PNAPYNAIHVGAAAPDTPTELINQLASGGRLIV  188 (223)
T ss_dssp             CCG--GGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEE
T ss_pred             ccc--cccceeeEEEEeechhchHHHHHhcCCCcEEEE
Confidence            000  124699998877654 44667889999999986

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.82  E-value=0.0083  Score=42.59  Aligned_cols=90  Identities=8%  Similarity=0.032  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHHhCCCceee--cCChhhHHHHHHHHCCCCceEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD--NVKLLKEEFGYDDAFN--YNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~--~~~~~~~~~g~~~v~~--~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      .|.+|||.|+ |.+|..-++.+...|++|++++....  -..++. + +.-....  +.. .++         .++++|+
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~-~-~~i~~~~~~~~~-~dl---------~~~~lv~   77 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQFTVWAN-E-GMLTLVEGPFDE-TLL---------DSCWLAI   77 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHT-T-TSCEEEESSCCG-GGG---------TTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHh-c-CCceeeccCCCH-HHh---------CCCcEEe
Confidence            3789999998 99999999999999999888874432  223332 2 2221222  111 121         3589999


Q ss_pred             ECCchhhH-HHHHHhcccCCEEEEEecc
Q 042784          240 DNVGGKML-EAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       240 d~~g~~~~-~~~~~~l~~~G~~v~~g~~  266 (356)
                      .+++...+ ....+..++.|..|.+.+.
T Consensus        78 ~at~d~~~n~~i~~~a~~~~ilVNv~D~  105 (113)
T d1pjqa1          78 AATDDDTVNQRVSDAAESRRIFCNVVDA  105 (113)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             ecCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence            99988755 4666788999999887553

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00065  Score=55.41  Aligned_cols=100  Identities=10%  Similarity=0.011  Sum_probs=66.8

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEE-
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYL-  239 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vl-  239 (356)
                      ..+|.+||=.|  .|.|..+..+++..+.+|++++.+++..+.+++.+... ..+.... .+.......+..+.||.++ 
T Consensus        51 ~~~g~~VLdIG--cG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          51 SSKGGRVLEVG--FGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLK-GLWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TTTCEEEEEEC--CTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEE-SCHHHHGGGSCTTCEEEEEE
T ss_pred             ccCCCeEEEee--ccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccccc-ccccccccccccccccceee
Confidence            36789999999  56778888898877679999999999999988443221 1111110 2333333334446799885 


Q ss_pred             ECCch-----------hhHHHHHHhcccCCEEEEEe
Q 042784          240 DNVGG-----------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       240 d~~g~-----------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      |....           ..+..+.+.|+|+|+++...
T Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         128 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            54421           14567889999999988643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.75  E-value=0.0018  Score=54.47  Aligned_cols=104  Identities=15%  Similarity=0.111  Sum_probs=70.3

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHC-
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYF-  231 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~-  231 (356)
                      +...+.+.+|++||=.|+  |.|..+..+++..|++|++++.++...+.+++   ..|...-+.... .++    .++. 
T Consensus        59 l~~~~~l~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~-~d~----~~l~~  131 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGA--GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY-GSF----LEIPC  131 (282)
T ss_dssp             HHHTTCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE-CCT----TSCSS
T ss_pred             HHHhcCCCCCCEEEEeCC--CCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccc-ccc----ccccc
Confidence            444567899999999994  46777888898889999999999987776663   234321111110 111    1222 


Q ss_pred             -CCCceEEEECCc-----h--hhHHHHHHhcccCCEEEEEecc
Q 042784          232 -PNGIDVYLDNVG-----G--KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       232 -~~~~d~vld~~g-----~--~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                       .+.||+|+..-.     +  ..+..+.++|+|+|+++.....
T Consensus       132 ~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         132 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence             346999986432     1  2788999999999998876543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0065  Score=50.02  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeec--CChhhHHHHHHHHC--CCC
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNY--NSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~--~~~~~~~~~i~~~~--~~~  234 (356)
                      .|+++||+||+|  |+|.+++..+...|++|+.++++++..+.+.+   ..+.......  .+..+....+.+..  .+.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   83 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcccc
Confidence            589999999988  78899999999999999999988665444332   3444333322  22233333333322  357


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      .|+.+++.+
T Consensus        84 ~d~~v~~a~   92 (258)
T d1qsga_          84 FDGFVHSIG   92 (258)
T ss_dssp             EEEEEECCC
T ss_pred             cceEEEeec
Confidence            899998765

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0024  Score=53.73  Aligned_cols=77  Identities=13%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEE---EEeCChHHHH---HHHHHhCC---C---ceeecCChhhHHHHHHHHCCCC
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVV---GSTGSDDNVK---LLKEEFGY---D---DAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~---~~~~s~~~~~---~~~~~~g~---~---~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      -|||+||++|+|.+++..+...|++|+   .+.++.++.+   ...+++..   .   ...|..+..+..+.+.+...+.
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g~   83 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGR   83 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSC
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccccc
Confidence            468899999999999988888998644   4444433322   22223332   1   1235555455555555555568


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+++.+.|
T Consensus        84 idilvnnag   92 (285)
T d1jtva_          84 VDVLVCNAG   92 (285)
T ss_dssp             CSEEEECCC
T ss_pred             hhhhhhccc
Confidence            999999887

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.62  E-value=0.0049  Score=51.08  Aligned_cols=81  Identities=15%  Similarity=0.274  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcCC--ChHHHHHHHHHHHCCCEEEEEeCChHHH-HHHHHHhCCCce---eecCCh---hhHHHHHHHHC--
Q 042784          163 KSGSNVFVSAAA--GGVGMFAGQLAKLKGCKVVGSTGSDDNV-KLLKEEFGYDDA---FNYNSE---MSFDAALTKYF--  231 (356)
Q Consensus       163 ~~g~~VlV~g~~--g~vG~~~i~la~~~G~~V~~~~~s~~~~-~~~~~~~g~~~v---~~~~~~---~~~~~~i~~~~--  231 (356)
                      -.|+++||+||+  .++|.++++.+...|++|+.+.++.++. +.+.++++....   .|..+.   .++.+.+.+..  
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~~   83 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   83 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcccc
Confidence            458999999964  4699999999999999999999877665 445546665321   233332   23444444432  


Q ss_pred             CCCceEEEECCc
Q 042784          232 PNGIDVYLDNVG  243 (356)
Q Consensus       232 ~~~~d~vld~~g  243 (356)
                      .+.+|+++.+.|
T Consensus        84 ~~~ld~~i~~ag   95 (268)
T d2h7ma1          84 GNKLDGVVHSIG   95 (268)
T ss_dssp             TCCEEEEEECCC
T ss_pred             CCCcceeeeccc
Confidence            346999999887

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.0047  Score=50.24  Aligned_cols=92  Identities=15%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +.++.+||=.|+  |.|..+..+++ .|++|++++.|++..+.++ +-+....+.... .++     .+..+.||+|+..
T Consensus        40 ~~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~~-~~l-----~~~~~~fD~ii~~  109 (246)
T d2avna1          40 LKNPCRVLDLGG--GTGKWSLFLQE-RGFEVVLVDPSKEMLEVAR-EKGVKNVVEAKA-EDL-----PFPSGAFEAVLAL  109 (246)
T ss_dssp             CCSCCEEEEETC--TTCHHHHHHHT-TTCEEEEEESCHHHHHHHH-HHTCSCEEECCT-TSC-----CSCTTCEEEEEEC
T ss_pred             cCCCCEEEEECC--CCchhcccccc-cceEEEEeecccccccccc-cccccccccccc-ccc-----ccccccccceeee
Confidence            457889988884  47888888876 5899999999999999999 556554554332 121     1223579999975


Q ss_pred             Cch--------hhHHHHHHhcccCCEEEEE
Q 042784          242 VGG--------KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       242 ~g~--------~~~~~~~~~l~~~G~~v~~  263 (356)
                      ...        ..+..+.+.|+|+|.++..
T Consensus       110 ~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         110 GDVLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             SSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence            442        2577888999999988753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.55  E-value=0.019  Score=43.85  Aligned_cols=91  Identities=14%  Similarity=0.107  Sum_probs=62.6

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      ++|+|.|. |.+|...+..++..|.  +|++.+++++..+.++ +.|.........        .+......|+|+-|+.
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~-~~~~~~~~~~~~--------~~~~~~~~dlIila~p   71 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSI--------AKVEDFSPDFVMLSSP   71 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCG--------GGGGGTCCSEEEECSC
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH-Hhhcchhhhhhh--------hhhhccccccccccCC
Confidence            36999996 9999999988888885  8999999999999998 777632221111        0011134788888887


Q ss_pred             hh----hHHHHHHhcccCCEEEEEecc
Q 042784          244 GK----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~~----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ..    .+......++++..++.++..
T Consensus        72 ~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             chhhhhhhhhhhccccccccccccccc
Confidence            64    344555566766666666553

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.51  E-value=0.01  Score=46.66  Aligned_cols=87  Identities=18%  Similarity=0.103  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...+++++.+|++|++.++..+....   ..+..    .   .++.+.+.+     .|+++-++.
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~~~~---~~~~~----~---~~l~~~l~~-----sDii~~~~p  105 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPELE---KKGYY----V---DSLDDLYKQ-----ADVISLHVP  105 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHH---HTTCB----C---SCHHHHHHH-----CSEEEECSC
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcccccccCcccccccc---cceee----e---ccccccccc-----cccccccCC
Confidence            4789999996 999999999999999999999865443221   11211    1   345555554     799888765


Q ss_pred             h--h----hHHHHHHhcccCCEEEEEecc
Q 042784          244 G--K----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~--~----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      .  +    .-...++.|+++..+|.++..
T Consensus       106 lt~~T~~li~~~~l~~mk~~a~lIN~sRG  134 (197)
T d1j4aa1         106 DVPANVHMINDESIAKMKQDVVIVNVSRG  134 (197)
T ss_dssp             CCGGGTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred             ccccccccccHHHHhhhCCccEEEecCch
Confidence            2  1    235667888888888876553

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.49  E-value=0.0058  Score=51.46  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEeCChHH
Q 042784          164 SGSNVFVSAAAG--GVGMFAGQLAKLKGCKVVGSTGSDDN  201 (356)
Q Consensus       164 ~g~~VlV~g~~g--~vG~~~i~la~~~G~~V~~~~~s~~~  201 (356)
                      .|+++||+||+|  |+|.++++.+...|++|+...+++..
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhh
Confidence            589999999876  89999999999999999988866543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.49  E-value=0.0045  Score=49.97  Aligned_cols=100  Identities=14%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             HHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCce--eecCChhhHHHHHHHHC
Q 042784          157 EVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDA--FNYNSEMSFDAALTKYF  231 (356)
Q Consensus       157 ~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v--~~~~~~~~~~~~i~~~~  231 (356)
                      .+.++++++++||=.|+  |.|..+..+++. |.+|++++.+++..+.+++   ..+...+  ...+. .+    + .+.
T Consensus         8 l~~~~l~~~~rVLDiGc--G~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~-~~----l-~~~   78 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVAT--GGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQ----M-PFT   78 (231)
T ss_dssp             HHHHTCCSCCEEEEETC--TTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--C----C-CSC
T ss_pred             HHhcCCCCcCEEEEecc--cCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccccccccccccc-cc----c-ccc
Confidence            35678999999999995  367777777754 7899999999987777653   2344322  21111 11    1 122


Q ss_pred             CCCceEEEECCc-----h--hhHHHHHHhcccCCEEEEEec
Q 042784          232 PNGIDVYLDNVG-----G--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       232 ~~~~d~vld~~g-----~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .+.||+|+..-.     +  ..+.++.++|+|+|.++....
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            356999986543     2  278899999999999887543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.05  Score=41.83  Aligned_cols=139  Identities=9%  Similarity=0.062  Sum_probs=80.7

Q ss_pred             EEEEEcCCChHHHH-HHHHHHHC-C-CEEEEE-eCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          167 NVFVSAAAGGVGMF-AGQLAKLK-G-CKVVGS-TGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       167 ~VlV~g~~g~vG~~-~i~la~~~-G-~~V~~~-~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +|.|.|. |.+|.- .+...+.. + ++|+++ ++++++.+.+.+.++...++     .++.+.+..   ..+|+|+-|+
T Consensus         5 rigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~ell~~---~~id~v~I~t   75 (181)
T d1zh8a1           5 RLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF-----DSYEELLES---GLVDAVDLTL   75 (181)
T ss_dssp             EEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE-----SCHHHHHHS---SCCSEEEECC
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee-----eeeeccccc---cccceeeccc
Confidence            6889996 999964 45666654 3 377755 45566777666578876443     345444432   4699999998


Q ss_pred             chh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhhc-cceEE-EEEecccccchHHHHHHHHHHHHHcCC
Q 042784          243 GGK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMIG-KEVKM-EGFMIGSHMDRFADFTVEMESYIKEGK  319 (356)
Q Consensus       243 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~g~  319 (356)
                      ... +...+..+++.+ .-|++.-+...+     ......+..+.. ++..+ .++.. + ...+...+.++.+++.+|+
T Consensus        76 p~~~h~~~~~~al~~g-k~V~~EKPl~~~-----~~e~~~l~~~~~~~~~~~~v~~~~-R-~~~~~~~~~~~~~~i~~G~  147 (181)
T d1zh8a1          76 PVELNLPFIEKALRKG-VHVICEKPISTD-----VETGKKVVELSEKSEKTVYIAENF-R-ENSYQKEFEDFYQVVAEGK  147 (181)
T ss_dssp             CGGGHHHHHHHHHHTT-CEEEEESSSSSS-----HHHHHHHHHHHHHCSSCEEEECGG-G-CCHHHHHHHHHHHHHHSCC
T ss_pred             cccccccccccccccc-hhhhcCCCCcCC-----HHHHHHHHHHHHHhCCeEEEEeec-c-ccccCHHHHHHHHHHHCCC
Confidence            875 677777777765 445565544311     111112222222 22222 22221 1 1224456788889999987


Q ss_pred             eee
Q 042784          320 IRS  322 (356)
Q Consensus       320 i~~  322 (356)
                      +-.
T Consensus       148 ig~  150 (181)
T d1zh8a1         148 PND  150 (181)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            643

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.47  E-value=0.0073  Score=49.83  Aligned_cols=35  Identities=14%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN  201 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~  201 (356)
                      +.||+||++++|.+.++.+...|++|+.++++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            56999999999999999999999999999977543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.43  E-value=0.014  Score=43.83  Aligned_cols=86  Identities=16%  Similarity=0.178  Sum_probs=65.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKM  246 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~  246 (356)
                      +|.+.|. |.+|.+.+.-+...|.++++..++.++.+.+++++|...+-      +..+.+.     ..|+||-|+-...
T Consensus         2 kIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~------~~~~~~~-----~~dvIilavkp~~   69 (152)
T d2ahra2           2 KIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAM------SHQDLID-----QVDLVILGIKPQL   69 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCS------SHHHHHH-----TCSEEEECSCGGG
T ss_pred             EEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeec------hhhhhhh-----ccceeeeecchHh
Confidence            5788996 99999887766667889999999999888876688875322      2333333     3899999998778


Q ss_pred             HHHHHHhcccCCEEEEEe
Q 042784          247 LEAVLNHVNVHARIILCG  264 (356)
Q Consensus       247 ~~~~~~~l~~~G~~v~~g  264 (356)
                      +...++.++++..++.+.
T Consensus        70 ~~~vl~~l~~~~~iis~~   87 (152)
T d2ahra2          70 FETVLKPLHFKQPIISMA   87 (152)
T ss_dssp             HHHHHTTSCCCSCEEECC
T ss_pred             HHHHhhhcccceeEeccc
Confidence            888888888877766543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.38  E-value=0.016  Score=43.39  Aligned_cols=82  Identities=18%  Similarity=0.286  Sum_probs=59.5

Q ss_pred             EEEEEcCCChHHHHHHH-HHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQ-LAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~-la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +|.+.|+ |.+|.+.++ +++.-+.+|++.++++++.+.+++++|.. +.+..+  .    +     ...|+||=|+-..
T Consensus         2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~--~----v-----~~~Div~lavkP~   68 (152)
T d1yqga2           2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP--E----L-----HSDDVLILAVKPQ   68 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC--C----C-----CTTSEEEECSCHH
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc--c----c-----cccceEEEecCHH
Confidence            5788997 999998776 55554479999999999999888677764 222111  1    1     2379999988877


Q ss_pred             hHHHHHHhcccCCEEE
Q 042784          246 MLEAVLNHVNVHARII  261 (356)
Q Consensus       246 ~~~~~~~~l~~~G~~v  261 (356)
                      .+...++-+++.++++
T Consensus        69 ~~~~v~~~l~~~~~~v   84 (152)
T d1yqga2          69 DMEAACKNIRTNGALV   84 (152)
T ss_dssp             HHHHHHTTCCCTTCEE
T ss_pred             HHHHhHHHHhhcccEE
Confidence            7777777777776655

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.38  E-value=0.0093  Score=43.63  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=53.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee-ecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF-NYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~-~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +++|.|+ |.+|..+++.+...|.+|++++.++++.+.++ ..|...++ |..+ .+.   +.+..=..+|.++-++++.
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~-~~~~~~~~gd~~~-~~~---l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-SYATHAVIANATE-ENE---LLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT-TTCSEEEECCTTC-TTH---HHHHTGGGCSEEEECCCSC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH-HhCCcceeeeccc-chh---hhccCCccccEEEEEcCch
Confidence            5788897 99999999999999999999999999999988 66654222 2222 222   3332213589998888753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.002  Score=44.21  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD  200 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~  200 (356)
                      .|++|+|.|. |..|+++++++...|++|++.+.++.
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            4789999997 99999999999999999999997543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.30  E-value=0.017  Score=43.32  Aligned_cols=103  Identities=16%  Similarity=0.050  Sum_probs=74.8

Q ss_pred             HHHHHHHh-CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHH
Q 042784          152 AWVGIEVL-GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       152 a~~~l~~~-~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      .+.++.+. ..+-.|++++|.|= |-+|.-+++-+|.+|++|+++...+-+.-.+.  +.-..+.      ...+.+   
T Consensus         9 ~~d~i~r~t~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~--mdGf~v~------~~~~a~---   76 (163)
T d1v8ba1           9 LPDGLMRATDFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAV--MEGFNVV------TLDEIV---   76 (163)
T ss_dssp             HHHHHHHHHCCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH--TTTCEEC------CHHHHT---
T ss_pred             HHHHHHHHhCceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchhhHHHH--hcCCccC------chhHcc---
Confidence            33444433 34578999999995 99999999999999999999998876544443  2222232      233333   


Q ss_pred             CCCCceEEEECCchh--hHHHHHHhcccCCEEEEEecccc
Q 042784          231 FPNGIDVYLDNVGGK--MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       231 ~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                        ...|+++-++|..  .-.+.++.|+++..+...|-...
T Consensus        77 --~~aDi~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHfd~  114 (163)
T d1v8ba1          77 --DKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDD  114 (163)
T ss_dssp             --TTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             --ccCcEEEEcCCCCccccHHHHHHhhCCeEEEeccccch
Confidence              2379999999986  35678899999999998886543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.28  E-value=0.025  Score=45.93  Aligned_cols=94  Identities=17%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHC-CCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYF-PNG  234 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~-~~~  234 (356)
                      .....++++||=.|+ | .|..+..+++ .|++|++++.|++-.+.+++.+   +....+...+       +.++. ++.
T Consensus        36 ~~~~~~~~~iLDiGc-G-tG~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d-------~~~l~~~~~  105 (251)
T d1wzna1          36 EDAKREVRRVLDLAC-G-TGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGD-------VLEIAFKNE  105 (251)
T ss_dssp             HTCSSCCCEEEEETC-T-TCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESC-------GGGCCCCSC
T ss_pred             HhcCCCCCEEEEeCC-C-CCccchhhcc-cceEEEEEeeccccccccccccccccccchheehh-------hhhcccccc
Confidence            345677789999995 4 4777777776 5889999999999888887432   3221122211       23333 357


Q ss_pred             ceEEEECCch----------hhHHHHHHhcccCCEEEE
Q 042784          235 IDVYLDNVGG----------KMLEAVLNHVNVHARIIL  262 (356)
Q Consensus       235 ~d~vld~~g~----------~~~~~~~~~l~~~G~~v~  262 (356)
                      ||+|+...+.          ..++.+.++|+|+|.++.
T Consensus       106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            9999976432          267788899999998875

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=96.25  E-value=0.0057  Score=51.11  Aligned_cols=39  Identities=18%  Similarity=0.135  Sum_probs=31.2

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHH
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS-DDNVKLLK  206 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s-~~~~~~~~  206 (356)
                      +||+||++++|.++++.+...|++|+..+++ +++.+.+.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            5899999999999999999999999887654 44444443

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.17  E-value=0.015  Score=46.83  Aligned_cols=104  Identities=14%  Similarity=0.041  Sum_probs=71.7

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHH---
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG--CKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKY---  230 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G--~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~---  230 (356)
                      ..+....++||=.|  +.+|..++.+|+.+.  .+|+.++.+++..+.+++   +.|....+.... .+..+.+.++   
T Consensus        54 L~~~~~~k~iLEiG--T~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~-g~a~~~L~~l~~~  130 (227)
T d1susa1          54 LLKLINAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE-GPALPVLDEMIKD  130 (227)
T ss_dssp             HHHHHTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE-SCHHHHHHHHHHC
T ss_pred             HHHhcCCCcEEEec--chhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee-hHHHHHHHHHHhc
Confidence            34445678999999  788999999998874  599999999888777764   345544343322 3344444443   


Q ss_pred             --CCCCceEEE-ECCch---hhHHHHHHhcccCCEEEEEec
Q 042784          231 --FPNGIDVYL-DNVGG---KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       231 --~~~~~d~vl-d~~g~---~~~~~~~~~l~~~G~~v~~g~  265 (356)
                        ..+.||.|| |+--.   ..++.+++.|+++|.++.=..
T Consensus       131 ~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         131 EKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             GGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             cccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccC
Confidence              234699997 44333   378899999999999885433

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.12  E-value=0.015  Score=45.58  Aligned_cols=89  Identities=15%  Similarity=0.090  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -.|.+|.|.|. |.+|...+++++.+|++|++.++...... .. ..+...   .   .++.+.+++     .|+|.-+.
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~-~~-~~~~~~---~---~~l~~ll~~-----sD~i~~~~  112 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSDGV-ER-ALGLQR---V---STLQDLLFH-----SDCVTLHC  112 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCTTH-HH-HHTCEE---C---SSHHHHHHH-----CSEEEECC
T ss_pred             eeCceEEEecc-ccccccceeeeeccccceeeccCcccccc-hh-hhcccc---c---cchhhcccc-----CCEEEEee
Confidence            35789999996 99999999999999999999986544322 22 334321   1   345555554     68887765


Q ss_pred             ch-h-----hHHHHHHhcccCCEEEEEec
Q 042784          243 GG-K-----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       243 g~-~-----~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .. +     .-...++.|+++..++.++.
T Consensus       113 plt~~T~~li~~~~l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         113 GLNEHNHHLINDFTVKQMRQGAFLVNTAR  141 (193)
T ss_dssp             CCCTTCTTSBSHHHHTTSCTTEEEEECSC
T ss_pred             cccccchhhhhHHHHhccCCCCeEEecCC
Confidence            42 1     23456778888888877655

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.11  E-value=0.0074  Score=48.71  Aligned_cols=100  Identities=13%  Similarity=0.103  Sum_probs=67.2

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCc---eeecCChhhHHHHHHHHCCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYDD---AFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~~---v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ...++||++||=.|+  +.|..+..+++..|.  +|++++.+++..+.+++......   .+..+.  ...+... ....
T Consensus        68 ~l~i~pG~~VLDlGa--GsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~--~~~~~~~-~~~~  142 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGI--ASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA--TKPEEYR-ALVP  142 (227)
T ss_dssp             CCCCCTTCEEEEETT--TSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT--TCGGGGT-TTCC
T ss_pred             ccccCCCCEEEEecc--CCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC--CCccccc-cccc
Confidence            356899999999995  458889999999874  99999999998888774432211   111111  1111111 1124


Q ss_pred             CceEEEECCch-----hhHHHHHHhcccCCEEEEE
Q 042784          234 GIDVYLDNVGG-----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       234 ~~d~vld~~g~-----~~~~~~~~~l~~~G~~v~~  263 (356)
                      .+|+++..+..     ..+.++.+.|+++|+++.+
T Consensus       143 ~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         143 KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            68988765432     2678888999999998865

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.012  Score=43.11  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=42.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|.|.|++|-+|...++..... ++++.+.....+...... .-+++-++|++.+....+.++.....+..+|+-++|
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~-~~~~DvvIDFS~p~~~~~~~~~~~~~~~~~ViGTTG   77 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLT-DGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG   77 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHH-TTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhc-cccCCEEEEcccHHHHHHHHHHHHhcCCCEEEeccc
Confidence            6899999999999988877654 678776653433333332 223444444444333333333332233444444444

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.10  E-value=0.006  Score=52.53  Aligned_cols=47  Identities=28%  Similarity=0.255  Sum_probs=40.3

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK  206 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~  206 (356)
                      .-+++|++|||+||+|-+|...++.+...|.+|++++++.++...++
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ   52 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHH
Confidence            34678999999999999999999888888999999999887766554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.07  E-value=0.027  Score=43.67  Aligned_cols=89  Identities=18%  Similarity=0.167  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -.|.++.|.|. |.+|...+++++.+|.+|++.++...+....  ..+..    +   .++.+.+.+     .|+|.-++
T Consensus        42 l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~--~~~~~----~---~~l~ell~~-----sDiv~~~~  106 (184)
T d1ygya1          42 IFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPARAA--QLGIE----L---LSLDDLLAR-----ADFISVHL  106 (184)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHHHHH--HHTCE----E---CCHHHHHHH-----CSEEEECC
T ss_pred             ccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChhHHh--hcCce----e---ccHHHHHhh-----CCEEEEcC
Confidence            35789999997 9999999999999999999998765544433  33332    1   235455544     78998776


Q ss_pred             ch-h-----hHHHHHHhcccCCEEEEEecc
Q 042784          243 GG-K-----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       243 g~-~-----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      .- +     .-...++.|+++..+|.++..
T Consensus       107 Plt~~T~~lin~~~l~~mk~~a~lIN~sRG  136 (184)
T d1ygya1         107 PKTPETAGLIDKEALAKTKPGVIIVNAARG  136 (184)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTEEEEECSCT
T ss_pred             CCCchhhhhhhHHHHhhhCCCceEEEecch
Confidence            53 1     234677888888888877653

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.04  E-value=0.026  Score=44.00  Aligned_cols=90  Identities=10%  Similarity=-0.017  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.++.|.|. |.+|...+++++..|.+|++.++......... ..+.   ..+   .++.+.+.+     .|+|.-+..
T Consensus        46 ~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-~~~~---~~~---~~l~~ll~~-----sD~v~l~~p  112 (191)
T d1gdha1          46 DNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASSSDEA-SYQA---TFH---DSLDSLLSV-----SQFFSLNAP  112 (191)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH-HHTC---EEC---SSHHHHHHH-----CSEEEECCC
T ss_pred             cccceEEeec-ccchHHHHHHHHhhccccccccccccccchhh-cccc---ccc---CCHHHHHhh-----CCeEEecCC
Confidence            3799999997 99999999999999999999986554333333 2222   111   345555554     788887654


Q ss_pred             h-h-----hHHHHHHhcccCCEEEEEecc
Q 042784          244 G-K-----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~-~-----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      - +     .-...++.|+++..+|.++..
T Consensus       113 lt~~T~~li~~~~l~~mk~~a~lIN~sRG  141 (191)
T d1gdha1         113 STPETRYFFNKATIKSLPQGAIVVNTARG  141 (191)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred             CCchHhheecHHHhhCcCCccEEEecCCc
Confidence            2 1     234677888888888877553

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.98  E-value=0.016  Score=49.46  Aligned_cols=102  Identities=22%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHH--CCCC
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKY--FPNG  234 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~--~~~~  234 (356)
                      .+++|++||=.+  .++|..++.+|+. |+ +|+.++.+++..+.+++   ..|....+.... .+..+.+..+  .++.
T Consensus       142 ~~~~g~~VLDl~--~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~-~d~~~~~~~~~~~~~~  217 (324)
T d2as0a2         142 WVQPGDRVLDVF--TYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV-GSAFEEMEKLQKKGEK  217 (324)
T ss_dssp             GCCTTCEEEETT--CTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE-SCHHHHHHHHHHTTCC
T ss_pred             hcCCCCeeeccc--Ccccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee-chhhhhhHHHHhccCC
Confidence            357899987776  3555566666654 66 89999999998888764   344432222211 3333334333  2457


Q ss_pred             ceEEEE---CCch-------------hhHHHHHHhcccCCEEEEEecc
Q 042784          235 IDVYLD---NVGG-------------KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       235 ~d~vld---~~g~-------------~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ||+|+-   +.+.             ..+..++++|+|+|.++.+...
T Consensus       218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            999985   2211             1456778899999999987554

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.013  Score=47.28  Aligned_cols=103  Identities=19%  Similarity=0.181  Sum_probs=67.4

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcee------------ecCCh------
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAF------------NYNSE------  220 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~------------~~~~~------  220 (356)
                      ...+.++.+||..|. | .|..+..+|+ .|++|++++.|+...+.++++.+.....            .....      
T Consensus        40 ~l~~~~~~rvLd~GC-G-~G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  116 (229)
T d2bzga1          40 FLKGKSGLRVFFPLC-G-KAVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYC  116 (229)
T ss_dssp             HHTTCCSCEEEETTC-T-TCTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE
T ss_pred             hcCCCCCCEEEEeCC-C-CcHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEE
Confidence            345788999999995 4 4777888876 6999999999999999888555432110            00000      


Q ss_pred             hhHHHHHHHHCCCCceEEEECCch---------hhHHHHHHhcccCCEEEEEec
Q 042784          221 MSFDAALTKYFPNGIDVYLDNVGG---------KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       221 ~~~~~~i~~~~~~~~d~vld~~g~---------~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .++.+ +.....+.+|+|+++.--         ..+....++|+|+|+++....
T Consensus       117 ~d~~~-l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         117 CSIFD-LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             SCGGG-GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cchhh-ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence            11110 111113469999986531         256788899999999776554

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.016  Score=49.50  Aligned_cols=73  Identities=16%  Similarity=0.224  Sum_probs=48.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeC----ChHHHHHHHHHhCCC--ce--eecCChhhHHHHHHHHCCCCceEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG----SDDNVKLLKEEFGYD--DA--FNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~----s~~~~~~~~~~~g~~--~v--~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      +|||+||+|-+|...+..+...|.+|+++++    ........+ .+...  ..  .|..+...+.+.+++   .++|+|
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~~---~~~d~V   77 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIE-RLGGKHPTFVEGDIRNEALMTEILHD---HAIDTV   77 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHH-HHHTSCCEEEECCTTCHHHHHHHHHH---TTCSEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHH-hhcCCCCEEEEeecCCHHHHHHHHhc---cCCCEE
Confidence            5999999999999999999889999999874    222333332 22211  12  233443445555543   469999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      |.+++
T Consensus        78 iHlAa   82 (338)
T d1udca_          78 IHFAG   82 (338)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            99874

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.048  Score=46.37  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHH----------hCCC----cee--ecC
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEE----------FGYD----DAF--NYN  218 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~----------~g~~----~v~--~~~  218 (356)
                      +.+..+++++++|+=.|  .|.|..++++|+..++ ++++++.++...+.+++.          +|..    .++  |..
T Consensus       143 ~~~~~~l~~~~~vlD~G--cG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLG--SGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEET--CTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred             HHHHcCCCCCCEEEEcC--CCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence            44578899999999888  6789999999999998 899999998877666421          2221    111  112


Q ss_pred             ChhhHHHHHHHHCCCCceEEEECCc---h---hhHHHHHHhcccCCEEEEEec
Q 042784          219 SEMSFDAALTKYFPNGIDVYLDNVG---G---KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       219 ~~~~~~~~i~~~~~~~~d~vld~~g---~---~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      + ..+.+.+.+     +|+|+-..-   .   ..+.+.++.|+|||++|..-.
T Consensus       221 ~-~~~~~~~~~-----advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         221 S-EEWRERIAN-----TSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             S-HHHHHHHHH-----CSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             c-cccccccCc-----ceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence            2 334444332     678875321   1   256778889999999986543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0014  Score=53.32  Aligned_cols=75  Identities=16%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCC-ceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYD-DAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .+.+|||+||+|-+|...++.+...|.  +|+++++++.+...-. .-... ...|..+..++.   ..+  .++|+++.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-~~~i~~~~~D~~~~~~~~---~~~--~~~d~vi~   86 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYA---SAF--QGHDVGFC   86 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGG---GGG--SSCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-cceeeeeeeccccccccc---ccc--cccccccc
Confidence            357899999999999999988877775  8999998654322111 10111 112332212221   112  46999999


Q ss_pred             CCch
Q 042784          241 NVGG  244 (356)
Q Consensus       241 ~~g~  244 (356)
                      |+|.
T Consensus        87 ~~~~   90 (232)
T d2bkaa1          87 CLGT   90 (232)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9874

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.85  E-value=0.025  Score=44.99  Aligned_cols=92  Identities=22%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHH--CCCCce
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKY--FPNGID  236 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~--~~~~~d  236 (356)
                      ++++++||=.|+  |.|..+..+++ .|.+|++++.|++..+.+++.   .+........+       +.++  ..+.+|
T Consensus        35 l~~~~~ILDiGc--G~G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d-------~~~l~~~~~~fD  104 (226)
T d1ve3a1          35 MKKRGKVLDLAC--GVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD-------ARKLSFEDKTFD  104 (226)
T ss_dssp             CCSCCEEEEETC--TTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECC-------TTSCCSCTTCEE
T ss_pred             cCCCCEEEEECC--CcchhhhhHhh-hhcccccccccccchhhhhhhhccccccccccccc-------cccccccCcCce
Confidence            578899999995  34777888886 488999999999988877642   23221111111       1111  235799


Q ss_pred             EEEECCc-----h----hhHHHHHHhcccCCEEEEE
Q 042784          237 VYLDNVG-----G----KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       237 ~vld~~g-----~----~~~~~~~~~l~~~G~~v~~  263 (356)
                      +|+....     .    ..+..+.+.|+|+|+++..
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            9986433     1    1577888999999998754

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.83  E-value=0.16  Score=38.83  Aligned_cols=93  Identities=14%  Similarity=0.126  Sum_probs=62.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEEE-eCChHHHHHHHHHhCCCce-eecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVGS-TGSDDNVKLLKEEFGYDDA-FNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~~-~~s~~~~~~~~~~~g~~~v-~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      ++.|.|. |.+|...++.++.. +++|+++ ++++++.+.+.++++.... -.+   .++.+.+..   ..+|+|+-|+.
T Consensus         3 ki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~---~~iD~v~I~tp   75 (184)
T d1ydwa1           3 RIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIH---GSYESLLED---PEIDALYVPLP   75 (184)
T ss_dssp             EEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEE---SSHHHHHHC---TTCCEEEECCC
T ss_pred             EEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeec---CcHHHhhhc---cccceeeeccc
Confidence            5889996 99998888777776 5688866 4566666666557775321 123   234444432   46999999998


Q ss_pred             hh-hHHHHHHhcccCCEEEEEeccc
Q 042784          244 GK-MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~~-~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      .. .++.+..+++.+-. +.+.-+.
T Consensus        76 ~~~h~~~~~~~l~~g~~-v~~EKP~   99 (184)
T d1ydwa1          76 TSLHVEWAIKAAEKGKH-ILLEKPV   99 (184)
T ss_dssp             GGGHHHHHHHHHTTTCE-EEECSSC
T ss_pred             chhhcchhhhhhhccce-eeccccc
Confidence            75 77888888887654 5565544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.019  Score=45.92  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=70.6

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHH---
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKY---  230 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~---  230 (356)
                      ..+....++||=.|  .+.|..++.+|+.+  +.+|+.++.+++..+.+++   ..|....+.... .+..+.+.++   
T Consensus        54 L~~~~~~k~vLEiG--t~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~-Gda~e~l~~~~~~  130 (219)
T d2avda1          54 LARLIQAKKALDLG--TFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL-KPALETLDELLAA  130 (219)
T ss_dssp             HHHHTTCCEEEEEC--CTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE-SCHHHHHHHHHHT
T ss_pred             HHHccCCCeEEEEe--chhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE-eehhhcchhhhhh
Confidence            44456678999999  67788888898876  4599999999888777664   345544343322 3333334332   


Q ss_pred             -CCCCceEEEECCch----hhHHHHHHhcccCCEEEEEec
Q 042784          231 -FPNGIDVYLDNVGG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       231 -~~~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                       ..+.||.||--...    ..++.+++.|+++|.++.=..
T Consensus       131 ~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         131 GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence             23469998754332    368899999999999886443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.77  E-value=0.011  Score=47.13  Aligned_cols=100  Identities=9%  Similarity=0.024  Sum_probs=64.1

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCCc
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ..++||++||=.|+  |.|..+..+++..+. +|++++.+++..+.+++.   .+....+.... .+. .. .......+
T Consensus        52 l~lkpg~~VLDlGc--G~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~-~~~-~~-~~~~~~~v  126 (209)
T d1nt2a_          52 LKLRGDERVLYLGA--ASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA-SKP-WK-YSGIVEKV  126 (209)
T ss_dssp             CCCCSSCEEEEETC--TTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT-TCG-GG-TTTTCCCE
T ss_pred             CCCCCCCEEEEeCC--cCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec-cCc-cc-cccccceE
Confidence            56899999999996  346678888888765 999999999888776542   22211111111 110 00 00112357


Q ss_pred             eEEEECCch-----hhHHHHHHhcccCCEEEEEe
Q 042784          236 DVYLDNVGG-----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       236 d~vld~~g~-----~~~~~~~~~l~~~G~~v~~g  264 (356)
                      |+++.....     ..+..+.+.|+++|+++.+-
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            888765432     26788889999999988654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.76  E-value=0.014  Score=49.53  Aligned_cols=73  Identities=16%  Similarity=0.239  Sum_probs=48.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeC-----ChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHCCCCceEEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG-----SDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~-----s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      +|||+||+|-+|...++.+...|.+|+++++     ..++...+. ..+.-+++  |..+...+.+.+..   ..+|+||
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~-~~~~~~~i~~Di~~~~~l~~~~~~---~~~d~Vi   77 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-SLGNFEFVHGDIRNKNDVTRLITK---YMPDSCF   77 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHH---HCCSEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh-ccCCcEEEEcccCCHHHHHHHHHh---cCCceEE
Confidence            7999999999999999988888999999863     112333343 33332232  33443445555443   2579999


Q ss_pred             ECCc
Q 042784          240 DNVG  243 (356)
Q Consensus       240 d~~g  243 (356)
                      .+.+
T Consensus        78 h~aa   81 (338)
T d1orra_          78 HLAG   81 (338)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            9875

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.76  E-value=0.0093  Score=49.35  Aligned_cols=59  Identities=14%  Similarity=0.259  Sum_probs=43.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|||+||+|-+|...+..++..|.+|+++++++               +|..+...+.+.+++   ..+|+|+++.+
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------~D~~d~~~~~~~l~~---~~~d~vih~a~   61 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNE---KKPNVVINCAA   61 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHH---HCCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------ccCCCHHHHHHHHHH---cCCCEEEeecc
Confidence            599999999999999999999999999998642               233332334444443   24788888876

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.75  E-value=0.0082  Score=51.69  Aligned_cols=77  Identities=16%  Similarity=0.146  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC---Cce--eecCChhhHHHHHHHHCCCCceEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGY---DDA--FNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~---~~v--~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      .|++|||+||+|-+|..+++.+...|.+|++++++..+...+.+....   -..  .|..+...+.+.+..   ..+|+|
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~---~~~~~v   83 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIRE---FQPEIV   83 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHH---HCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhh---chhhhh
Confidence            479999999999999999999999999999999876532222112111   111  233332333343333   357899


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+++
T Consensus        84 ~~~aa   88 (356)
T d1rkxa_          84 FHMAA   88 (356)
T ss_dssp             EECCS
T ss_pred             hhhhc
Confidence            98876

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.74  E-value=0.15  Score=37.74  Aligned_cols=98  Identities=18%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCCh--HHHHHHHHHhCCCceeecCCh--hhHHHH-------------
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSD--DNVKLLKEEFGYDDAFNYNSE--MSFDAA-------------  226 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~--~~~~~~~~~~g~~~v~~~~~~--~~~~~~-------------  226 (356)
                      ++|.|.|++|++|.-++++.+..  .++|++.....  +.+....++|....+......  ..+...             
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~~   82 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGAD   82 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCcc
Confidence            78999999999999999999876  46888776432  233222237777655443320  111111             


Q ss_pred             -HHHHCCCCceEEEECC-chhhHHHHHHhcccCCEEEEE
Q 042784          227 -LTKYFPNGIDVYLDNV-GGKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       227 -i~~~~~~~~d~vld~~-g~~~~~~~~~~l~~~G~~v~~  263 (356)
                       +.++....+|+++.++ |...+...+.+++.+.++.+.
T Consensus        83 ~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA  121 (150)
T d1r0ka2          83 ALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA  121 (150)
T ss_dssp             HHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred             chheecccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence             1111123479999885 557888888999888776643

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.69  E-value=0.031  Score=43.47  Aligned_cols=89  Identities=15%  Similarity=-0.006  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+.+|.|.|. |.+|...+++++.+|.+|++.++........+ ..+..   ..   .++.+.+.     ..|+|.-+..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-~~~~~---~~---~~l~~~l~-----~sD~v~~~~p  109 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-ELNLT---WH---ATREDMYP-----VCDVVTLNCP  109 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-HHTCE---EC---SSHHHHGG-----GCSEEEECSC
T ss_pred             cccceeeccc-cccchhhhhhhhccCceEEEEeeccccccccc-ccccc---cc---CCHHHHHH-----hccchhhccc
Confidence            5789999997 99999999999999999999997654444444 33432   11   23444333     3788877654


Q ss_pred             h-h-----hHHHHHHhcccCCEEEEEec
Q 042784          244 G-K-----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       244 ~-~-----~~~~~~~~l~~~G~~v~~g~  265 (356)
                      - +     .-...++.|+++..+|.++.
T Consensus       110 lt~~T~~li~~~~l~~mk~ga~lIN~aR  137 (188)
T d2naca1         110 LHPETEHMINDETLKLFKRGAYIVNTAR  137 (188)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             ccccchhhhHHHHHHhCCCCCEEEecCc
Confidence            2 1     33567778888887777654

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.67  E-value=0.052  Score=46.18  Aligned_cols=39  Identities=10%  Similarity=0.037  Sum_probs=31.8

Q ss_pred             CCEEEEEcC--CChHHHHHHHHHHHCCCEEEEEeCChHHHH
Q 042784          165 GSNVFVSAA--AGGVGMFAGQLAKLKGCKVVGSTGSDDNVK  203 (356)
Q Consensus       165 g~~VlV~g~--~g~vG~~~i~la~~~G~~V~~~~~s~~~~~  203 (356)
                      ++..||+|+  +.|+|.++++.+...|++|+.+.++.....
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~   42 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNI   42 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhh
Confidence            567899994  469999999999999999999886655443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.67  E-value=0.056  Score=40.69  Aligned_cols=88  Identities=14%  Similarity=0.095  Sum_probs=63.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh-
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK-  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-  245 (356)
                      +|-|.|. |.+|...+.-+...|.+|++.++++++.+.++ +.+.. +.     .+..+.+++     .|++|-|+.++ 
T Consensus         2 kIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~-~~-----~~~~e~~~~-----~d~ii~~v~~~~   68 (161)
T d1vpda2           2 KVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAE-TA-----STAKAIAEQ-----CDVIITMLPNSP   68 (161)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC-----SSHHHHHHH-----CSEEEECCSSHH
T ss_pred             EEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH-Hhhhh-hc-----ccHHHHHhC-----CCeEEEEcCCHH
Confidence            5788996 99999988877788999999999999999988 66654 22     223333433     79999998653 


Q ss_pred             hHHH-------HHHhcccCCEEEEEeccc
Q 042784          246 MLEA-------VLNHVNVHARIILCGMIS  267 (356)
Q Consensus       246 ~~~~-------~~~~l~~~G~~v~~g~~~  267 (356)
                      ....       ....++++..++.++...
T Consensus        69 ~v~~v~~~~~~~~~~~~~g~iiid~sT~~   97 (161)
T d1vpda2          69 HVKEVALGENGIIEGAKPGTVLIDMSSIA   97 (161)
T ss_dssp             HHHHHHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred             HHHHHHhCCcchhhccCCCCEEEECCCCC
Confidence            3332       344567777777776543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.66  E-value=0.079  Score=39.66  Aligned_cols=92  Identities=14%  Similarity=0.207  Sum_probs=54.9

Q ss_pred             CEEEEEcCCChHHH-HHHHHHHHCCC-EEEEEeC-ChH--HHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          166 SNVFVSAAAGGVGM-FAGQLAKLKGC-KVVGSTG-SDD--NVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       166 ~~VlV~g~~g~vG~-~~i~la~~~G~-~V~~~~~-s~~--~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      -+|.|.| +|.+|. ..+++++.... ++++++. +.+  ...+++ ++|...  .+   ..+.+.+......++|+||+
T Consensus         5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~-~~~i~~--~~---~~~d~l~~~~~~~~iDiVf~   77 (157)
T d1nvmb1           5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ-RMGVTT--TY---AGVEGLIKLPEFADIDFVFD   77 (157)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH-HTTCCE--ES---SHHHHHHHSGGGGGEEEEEE
T ss_pred             cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhh-hcCCcc--cc---cceeeeeecccccccCEEEE
Confidence            4789999 599997 46678877654 8887764 333  335555 777652  22   12222222111246999999


Q ss_pred             CCchh-hHH--HHHHhcccCCEEEEEe
Q 042784          241 NVGGK-MLE--AVLNHVNVHARIILCG  264 (356)
Q Consensus       241 ~~g~~-~~~--~~~~~l~~~G~~v~~g  264 (356)
                      ++... +..  .+.+.++.|-+++...
T Consensus        78 ATpag~h~~~~~~~~aa~~G~~VID~s  104 (157)
T d1nvmb1          78 ATSASAHVQNEALLRQAKPGIRLIDLT  104 (157)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             cCCchhHHHhHHHHHHHHcCCEEEEcc
Confidence            98753 444  3455566666666543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.62  E-value=0.19  Score=38.59  Aligned_cols=40  Identities=15%  Similarity=0.050  Sum_probs=34.3

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK  206 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~  206 (356)
                      ++|.|.|+ |.+|...+.++...|.+|+..+.+++..+.+.
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~   44 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGL   44 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhh
Confidence            57999997 99999888888888999999999988766544

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.56  E-value=0.1  Score=39.37  Aligned_cols=133  Identities=11%  Similarity=0.124  Sum_probs=80.5

Q ss_pred             EEEEEcCCChHHHH-HHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMF-AGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~-~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|.|.|+ |.+|.- .+..++.. ++++++.++++++.+.+.+.++...+++     ++.+.+.    ..+|+|+-|+..
T Consensus         3 rvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~ll~----~~iD~V~I~tp~   72 (167)
T d1xeaa1           3 KIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCT-----DYRDVLQ----YGVDAVMIHAAT   72 (167)
T ss_dssp             EEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCS-----STTGGGG----GCCSEEEECSCG
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccc-----cHHHhcc----cccceecccccc
Confidence            6889996 999854 45566555 4588888888888888877888764432     2222221    358999999987


Q ss_pred             h-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEE-EEEecccccchHHHHHHHHHHHHHcCCee
Q 042784          245 K-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKM-EGFMIGSHMDRFADFTVEMESYIKEGKIR  321 (356)
Q Consensus       245 ~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~g~i~  321 (356)
                      . +.+.+..+++.+-. +++.-+....     ......+.... .++..+ .++   +   ++...+.++.+.+..|++.
T Consensus        73 ~~H~~~~~~al~~gk~-V~~EKP~~~~-----~~e~~~l~~~a~~~~~~~~vg~---~---r~~~~~~~~~~~~~~G~ig  140 (167)
T d1xeaa1          73 DVHSTLAAFFLHLGIP-TFVDKPLAAS-----AQECENLYELAEKHHQPLYVGF---N---GFDAMVQDWLQVAAAGKLP  140 (167)
T ss_dssp             GGHHHHHHHHHHTTCC-EEEESCSCSS-----HHHHHHHHHHHHHTTCCEEEEC---G---THHHHHHHHHHHHHHTCCC
T ss_pred             cccccccccccccccc-cccCCCCcCC-----HHHHHHHHHHHHHcCCEEEEEe---C---cCCHHHHHHHHHhhcCCCC
Confidence            5 77788888887655 5565544311     11111222222 223322 222   1   2345567788888888875

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.55  E-value=0.049  Score=47.37  Aligned_cols=32  Identities=25%  Similarity=0.199  Sum_probs=29.4

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST  196 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~  196 (356)
                      |.+|||+||+|-+|..++..+...|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            68999999999999999999999999999997

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.039  Score=48.22  Aligned_cols=105  Identities=25%  Similarity=0.216  Sum_probs=68.8

Q ss_pred             HHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHH----------hCCC---ceeec
Q 042784          152 AWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEE----------FGYD---DAFNY  217 (356)
Q Consensus       152 a~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~----------~g~~---~v~~~  217 (356)
                      ..+.+ +..++++|+++|=.|  .|+|..++++|+..|+ +|++++.++...+.+++.          +|..   ..+..
T Consensus       205 i~~Il-~~l~Lkpgd~fLDLG--CG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         205 LSDVY-QQCQLKKGDTFMDLG--SGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHH-HHTTCCTTCEEEEES--CTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHH-HHhCCCCCCEEEeCC--CCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            34444 568899999988887  6789999999999987 899999998877776531          1110   01111


Q ss_pred             ----CChhhHHHHHHHHCCCCceEEEECC---ch---hhHHHHHHhcccCCEEEEEe
Q 042784          218 ----NSEMSFDAALTKYFPNGIDVYLDNV---GG---KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       218 ----~~~~~~~~~i~~~~~~~~d~vld~~---g~---~~~~~~~~~l~~~G~~v~~g  264 (356)
                          .....+...+     ..+|+++-..   +.   ..+.+.++.|+|||+++..-
T Consensus       282 ~~~f~~~~~~d~~~-----~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         282 KKSFVDNNRVAELI-----PQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             SSCSTTCHHHHHHG-----GGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eechhhcccccccc-----ccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence                1101122222     2377887532   22   26778888999999998653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.49  E-value=0.044  Score=42.95  Aligned_cols=85  Identities=27%  Similarity=0.266  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|..++++++.+|++|++.++...+        +....+.+.   ++.+.+.+     .|++.-++.
T Consensus        44 ~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~--------~~~~~~~~~---~l~~l~~~-----~D~v~~~~p  106 (199)
T d1dxya1          44 GQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMK--------GDHPDFDYV---SLEDLFKQ-----SDVIDLHVP  106 (199)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS--------SCCTTCEEC---CHHHHHHH-----CSEEEECCC
T ss_pred             cceeeeeeec-ccccccccccccccceeeeccCCccch--------hhhcchhHH---HHHHHHHh-----cccceeeec
Confidence            4689999996 999999999999999999999865332        111122232   34444444     688877654


Q ss_pred             h-h-----hHHHHHHhcccCCEEEEEec
Q 042784          244 G-K-----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       244 ~-~-----~~~~~~~~l~~~G~~v~~g~  265 (356)
                      . +     .-...++.|+++..+|.++.
T Consensus       107 lt~~T~~li~~~~l~~mk~~a~lIN~aR  134 (199)
T d1dxya1         107 GIEQNTHIINEAAFNLMKPGAIVINTAR  134 (199)
T ss_dssp             CCGGGTTSBCHHHHHHSCTTEEEEECSC
T ss_pred             ccccccccccHHHhhccCCceEEEeccc
Confidence            2 1     23467788888888887755

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.39  E-value=0.009  Score=46.90  Aligned_cols=101  Identities=13%  Similarity=0.081  Sum_probs=64.5

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCc-eeecCChhhHHHHHHHHC
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDD-AFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~-v~~~~~~~~~~~~i~~~~  231 (356)
                      +.+.....++++||=.|  .|.|..++.+++ .+.+|++++.++...+.+++   ..+... .+.... .++.   ....
T Consensus        44 Li~~l~~~~~~~VLDiG--cG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~-~d~~---~~~~  116 (194)
T d1dusa_          44 LVENVVVDKDDDILDLG--CGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVH-SDLY---ENVK  116 (194)
T ss_dssp             HHHHCCCCTTCEEEEET--CTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEE-CSTT---TTCT
T ss_pred             HHHhCCcCCCCeEEEEe--ecCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEE-cchh---hhhc
Confidence            44456778899999988  456677777765 46799999999988888764   223321 111110 1111   1122


Q ss_pred             CCCceEEEECC----chh----hHHHHHHhcccCCEEEEE
Q 042784          232 PNGIDVYLDNV----GGK----MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       232 ~~~~d~vld~~----g~~----~~~~~~~~l~~~G~~v~~  263 (356)
                      ++.+|+|+...    +.+    .+..+.+.|+++|+++.+
T Consensus       117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            35799999632    222    577888999999987653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.1  Score=40.55  Aligned_cols=40  Identities=28%  Similarity=0.227  Sum_probs=35.0

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK  206 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~  206 (356)
                      ++|.|.|+ |.+|...++++...|.+|+..+.+++..+.++
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHH
Confidence            58999997 99999999999999999999999987766554

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.31  E-value=0.0079  Score=48.80  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=32.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN  201 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~  201 (356)
                      ++++||+||++++|.++++.+...|++|+.++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            3688999999999999999999999999999987654

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.28  E-value=0.013  Score=42.50  Aligned_cols=73  Identities=14%  Similarity=0.136  Sum_probs=47.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKM  246 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~  246 (356)
                      +|.|+|++|-+|.+..++++..|.+++.......              .     ..+         ..+|++||++..+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~--------------~-----~~~---------~~~DVvIDFS~p~~   53 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG--------------V-----EEL---------DSPDVVIDFSSPEA   53 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE--------------E-----EEC---------SCCSEEEECSCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc--------------H-----HHh---------ccCCEEEEecCHHH
Confidence            5899999999999999999999987765431100              0     000         23688888887776


Q ss_pred             HHHHHHhcccCCEEEEEeccc
Q 042784          247 LEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       247 ~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ....++.....+.=+.+|...
T Consensus        54 ~~~~l~~~~~~~~p~ViGTTG   74 (128)
T d1vm6a3          54 LPKTVDLCKKYRAGLVLGTTA   74 (128)
T ss_dssp             HHHHHHHHHHHTCEEEECCCS
T ss_pred             HHHHHHHHHhcCCCEEEEcCC
Confidence            555555544444444566544

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.27  E-value=0.015  Score=45.15  Aligned_cols=43  Identities=14%  Similarity=0.195  Sum_probs=37.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF  209 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~  209 (356)
                      +|.|+||+|++|.+..+.+...|++|++..|++++.+.+.+++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i   44 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY   44 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5889987899999999999999999999999998877765443

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.037  Score=41.77  Aligned_cols=98  Identities=16%  Similarity=0.070  Sum_probs=70.3

Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      .-+||+....+..|....---.|++|+|.|-+.-+|.-...++...|++|+......                     .+
T Consensus        15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------------------~~   73 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KN   73 (166)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SC
T ss_pred             CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc---------------------ch
Confidence            456666666666666544445799999999999999999999999999987664221                     22


Q ss_pred             HHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          223 FDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +.+.+++     +|+++-++|.+.+- --+.++++..++.+|...
T Consensus        74 l~~~~~~-----ADivI~a~G~p~~i-~~~~vk~g~vvIDvGi~~  112 (166)
T d1b0aa1          74 LRHHVEN-----ADLLIVAVGKPGFI-PGDWIKEGAIVIDVGINR  112 (166)
T ss_dssp             HHHHHHH-----CSEEEECSCCTTCB-CTTTSCTTCEEEECCCEE
T ss_pred             hHHHHhh-----hhHhhhhccCcccc-cccccCCCcEEEecCcee
Confidence            3333443     79999999976321 134678999999988753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.09  E-value=0.13  Score=37.89  Aligned_cols=72  Identities=19%  Similarity=0.139  Sum_probs=47.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCceee---cCChhhHHHHHHHHCCCCceEEEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYDDAFN---YNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~~v~~---~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      .+|.|.||+|.+|..++.++...|.  +++.++..+.+.+.+. -..+.....   .....++.+.+     +++|+|+-
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~D-l~~~~~~~~~~~~~~~~~~~~~~-----~~aDivVi   74 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAAD-LSHIETRATVKGYLGPEQLPDCL-----KGCDVVVI   74 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHH-HTTSSSSCEEEEEESGGGHHHHH-----TTCSEEEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHH-HhhhhhhcCCCeEEcCCChHHHh-----CCCCEEEE
Confidence            3789999889999999999998886  7888887665544332 222221111   11114455544     45999999


Q ss_pred             CCc
Q 042784          241 NVG  243 (356)
Q Consensus       241 ~~g  243 (356)
                      +.|
T Consensus        75 tag   77 (144)
T d1mlda1          75 PAG   77 (144)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            888

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.00  E-value=0.029  Score=44.10  Aligned_cols=69  Identities=22%  Similarity=0.278  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -.|.+|+|.|- |.+|..+++++...|++|++.+...++..... .+|.. .+...   +       +..-.+|+++=|.
T Consensus        25 L~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~-~~g~~-~~~~~---~-------~~~~~~DI~iPcA   91 (201)
T d1c1da1          25 LDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHAV-ALGHT-AVALE---D-------VLSTPCDVFAPCA   91 (201)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-ECCGG---G-------GGGCCCSEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchHHHHHHHH-hhccc-ccCcc---c-------cccccceeeeccc
Confidence            36899999995 99999999999999999999998888888887 77764 22221   1       1223578887665


Q ss_pred             ch
Q 042784          243 GG  244 (356)
Q Consensus       243 g~  244 (356)
                      ..
T Consensus        92 ~~   93 (201)
T d1c1da1          92 MG   93 (201)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.44  Score=35.05  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=63.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCCh--HHHHHHHHHhCCCceeecCCh--hhHHHH-------------
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSD--DNVKLLKEEFGYDDAFNYNSE--MSFDAA-------------  226 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~--~~~~~~~~~~g~~~v~~~~~~--~~~~~~-------------  226 (356)
                      ++|.|.|++|++|.-++.+.+..  .++|++.....  +.+.....+|....++-.++.  ..+...             
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            37999999999999999999887  35887776332  233322237777655544321  111111             


Q ss_pred             ---HHHH-CCCCceEEEECC-chhhHHHHHHhcccCCEEEEE
Q 042784          227 ---LTKY-FPNGIDVYLDNV-GGKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       227 ---i~~~-~~~~~d~vld~~-g~~~~~~~~~~l~~~G~~v~~  263 (356)
                         +.++ ....+|+|+.+. |...+...+..++.+-++.+.
T Consensus        82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA  123 (151)
T d1q0qa2          82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA  123 (151)
T ss_dssp             HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence               2221 123689999986 556888889999888776643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=94.97  E-value=0.011  Score=47.40  Aligned_cols=96  Identities=13%  Similarity=0.122  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHH---CCCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHCCCCc
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKL---KGCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~---~G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ++++.+||=.|.  |.|..+..+++.   .+++|++++.|++-.+.+++.+   +....+.... .+    ..++....+
T Consensus        37 ~~~~~~vLDlGC--GtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~-~d----~~~~~~~~~  109 (225)
T d1im8a_          37 VTADSNVYDLGC--SRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC-ND----IRHVEIKNA  109 (225)
T ss_dssp             CCTTCEEEEESC--TTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEEC-SC----TTTCCCCSE
T ss_pred             cCCCCEEEEecc--chhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhcc-ch----hhccccccc
Confidence            688999999994  567777777775   4779999999999998887533   2222222111 11    122222457


Q ss_pred             eEEEECCch---------hhHHHHHHhcccCCEEEEEe
Q 042784          236 DVYLDNVGG---------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       236 d~vld~~g~---------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      |+++.+..-         ..+..+.+.|+|+|.++...
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            777664331         26889999999999998754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.049  Score=41.31  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=70.2

Q ss_pred             cccCchhhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhh
Q 042784          143 SSLGIPGFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMS  222 (356)
Q Consensus       143 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~  222 (356)
                      +-+||+....+..+.+..---.|++|+|.|-+.-+|.-+..++...|++|+......                     .+
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t---------------------~~   75 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------------------AH   75 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SS
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc---------------------cc
Confidence            566777777777776544335799999999999999999999999999999876321                     12


Q ss_pred             HHHHHHHHCCCCceEEEECCchhhHHHHHHhcccCCEEEEEecc
Q 042784          223 FDAALTKYFPNGIDVYLDNVGGKMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       223 ~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +.+.++     ..|+++-++|.+.+- --+.++++-.++.+|..
T Consensus        76 l~~~~~-----~aDivi~a~G~~~~i-~~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          76 LDEEVN-----KGDILVVATGQPEMV-KGEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             HHHHHT-----TCSEEEECCCCTTCB-CGGGSCTTCEEEECCCB
T ss_pred             HHHHHh-----hccchhhcccccccc-ccccccCCCeEeccCcc
Confidence            222232     378999999876331 13478888999988864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.94  E-value=0.028  Score=43.41  Aligned_cols=84  Identities=19%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .|.+|.|.|. |.+|...+++++.+|++|++.+++...        +.....     .++.+.++     ..|+|+-++.
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~--------~~~~~~-----~~l~ell~-----~sDiv~~~~p  101 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKE--------GPWRFT-----NSLEEALR-----EARAAVCALP  101 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCC--------SSSCCB-----SCSHHHHT-----TCSEEEECCC
T ss_pred             cCceEEEecc-ccccccceeeeeccccccccccccccc--------cceeee-----echhhhhh-----ccchhhcccc
Confidence            4889999997 999999999999999999999866421        111111     23444443     3799988764


Q ss_pred             h--h----hHHHHHHhcccCCEEEEEecc
Q 042784          244 G--K----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~--~----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      -  +    .-...++.|+++..+|.++..
T Consensus       102 l~~~t~~li~~~~l~~mk~~ailIN~~RG  130 (181)
T d1qp8a1         102 LNKHTRGLVKYQHLALMAEDAVFVNVGRA  130 (181)
T ss_dssp             CSTTTTTCBCHHHHTTSCTTCEEEECSCG
T ss_pred             cccccccccccceeeeccccceEEecccc
Confidence            3  1    225778889999999887643

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.94  E-value=0.024  Score=48.26  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=30.4

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      +++||+||+|-+|..++..+...|.+|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            579999999999999999998899999999974

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.11  Score=38.48  Aligned_cols=94  Identities=11%  Similarity=0.047  Sum_probs=58.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHH-HHHHHH--hCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNV-KLLKEE--FGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~-~~~~~~--~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      ++++|.|+ |.+|..+++.+...|.+|++++..+++. +.+.+.  .|.. ++ +.+ ..-.+.+++..-..+|.++-++
T Consensus         4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~-vi-~Gd-~~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNAD-VI-PGD-SNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCE-EE-ESC-TTSHHHHHHHTTTTCSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcE-EE-Ecc-CcchHHHHHhccccCCEEEEcc
Confidence            57999997 9999999999999999999998776543 333312  2332 33 222 2223344554435699999999


Q ss_pred             chh----hHHHHHHhcccCCEEEEE
Q 042784          243 GGK----MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       243 g~~----~~~~~~~~l~~~G~~v~~  263 (356)
                      +.+    ......+.+.+.-+++..
T Consensus        80 ~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          80 DNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             ccHHHHHHHHHHHHHhCCCCceEEE
Confidence            875    222333445566555543

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.068  Score=45.58  Aligned_cols=75  Identities=17%  Similarity=0.139  Sum_probs=47.0

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC----hHHHHHHHHHh--CCC-ceeecCChhhHHHHHHHHCCCCceEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS----DDNVKLLKEEF--GYD-DAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s----~~~~~~~~~~~--g~~-~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      +.|||+||+|-+|...+..+...|.+|+++++.    .++........  +.. ...|..+..++...+..   .++|+|
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---~~~d~V   78 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKE---YKIDSV   78 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHH---SCCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhc---cCCCEE
Confidence            579999999999999998888899999998632    12222222111  221 11233443344444433   369999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+++
T Consensus        79 ihlAa   83 (347)
T d1z45a2          79 IHFAG   83 (347)
T ss_dssp             EECCS
T ss_pred             EEccc
Confidence            99876

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.91  E-value=0.034  Score=46.82  Aligned_cols=74  Identities=19%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHHhCCCc-----eeecCChhhHHHHHHHHCCCCceEE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD--NVKLLKEEFGYDD-----AFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~--~~~~~~~~~g~~~-----v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      ++|||+||+|-+|..++..+...|.+|+++++...  ....++ .++...     ..|..+...+.+.+.+.   ..+++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~~~~~   76 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR-ELGIEGDIQYEDGDMADACSVQRAVIKA---QPQEV   76 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHH-HTTCGGGEEEEECCTTCHHHHHHHHHHH---CCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHH-HhcccCCcEEEEccccChHHhhhhhccc---ccccc
Confidence            48999999999999999988888999999987542  234444 444321     22444434444444442   35677


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +.+..
T Consensus        77 ~~~a~   81 (321)
T d1rpna_          77 YNLAA   81 (321)
T ss_dssp             EECCS
T ss_pred             ccccc
Confidence            66654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.85  E-value=0.24  Score=37.55  Aligned_cols=97  Identities=18%  Similarity=0.101  Sum_probs=61.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC-CEEEEEeC-C-hHHHHHHHHHhCCCceeecCChhhHHHHHHHH--C--C------C
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTG-S-DDNVKLLKEEFGYDDAFNYNSEMSFDAALTKY--F--P------N  233 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~-s-~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~--~--~------~  233 (356)
                      +|.|+|- |-+|...++.+.... .+|+++.. + ......+. ..+.+.....   .+......+.  .  +      .
T Consensus         4 rIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           4 KVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAK-ELGIPVYAAS---EEFIPRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHH-HTTCCEEESS---GGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhh-hcCceeeccc---ccceeeecccCccccchhhhhhc
Confidence            6899996 999998888776654 47776653 2 23444455 5565422211   1111111110  0  0      3


Q ss_pred             CceEEEECCch-hhHHHHHHhcccCCEEEEEecccc
Q 042784          234 GIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       234 ~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ++|+|+||+|. ...+.+-..+..+.+.|..+.+..
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~  114 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA  114 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            69999999997 467777788999999888776543

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.036  Score=47.68  Aligned_cols=75  Identities=12%  Similarity=0.121  Sum_probs=44.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH-----HHHHHHHHh---CCC-c--eeecCChhhHHHHHHHHCCCC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD-----NVKLLKEEF---GYD-D--AFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~-----~~~~~~~~~---g~~-~--v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      +.|||+||+|-+|..++..+...|.+|+++++...     +.+.+....   ... .  ..|..+...+.+.+.+   ..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~   78 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILRE---VQ   78 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHH---HC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhc---cC
Confidence            57899999999999999999889999999997543     222221110   011 0  1123333445555443   25


Q ss_pred             ceEEEECCc
Q 042784          235 IDVYLDNVG  243 (356)
Q Consensus       235 ~d~vld~~g  243 (356)
                      +|+|+++++
T Consensus        79 ~d~v~h~aa   87 (357)
T d1db3a_          79 PDEVYNLGA   87 (357)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEeec
Confidence            799999875

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0047  Score=52.52  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG  197 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~  197 (356)
                      ++|||+||+|-+|...+..+...|.+|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            58999999999999999888889999999875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.74  E-value=0.037  Score=44.49  Aligned_cols=101  Identities=10%  Similarity=0.039  Sum_probs=64.2

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHCCCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ...++||++||=.|+  |.|..+..+++... .+|++++.+++..+.+++.....   ..+.... ... ...... ...
T Consensus        69 ~l~ikpG~~VLDlGc--GsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~-~~~-~~~~~~-~~~  143 (230)
T d1g8sa_          69 VMPIKRDSKILYLGA--SAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA-NKP-QEYANI-VEK  143 (230)
T ss_dssp             CCCCCTTCEEEEESC--CSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT-TCG-GGGTTT-CCC
T ss_pred             hCCCCCCCEEEEeCE--EcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee-ccC-cccccc-cce
Confidence            456899999999996  45777888888753 39999999999888877332211   1111111 110 011111 124


Q ss_pred             ceEEEECCch-----hhHHHHHHhcccCCEEEEEe
Q 042784          235 IDVYLDNVGG-----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       235 ~d~vld~~g~-----~~~~~~~~~l~~~G~~v~~g  264 (356)
                      +|+++.....     ..+..+.+.|+|+|.++.+-
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            6677765542     25788889999999988653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.04  Score=45.42  Aligned_cols=95  Identities=13%  Similarity=0.098  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      ..++.+||=.|.  |.|..+..+++.. +.++++++.+++..+.+++..........+. .++     .+..+.||+|+.
T Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~-~~l-----~~~~~sfD~v~~  153 (268)
T d1p91a_          82 DDKATAVLDIGC--GEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRL-----PFSDTSMDAIIR  153 (268)
T ss_dssp             CTTCCEEEEETC--TTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT-TSC-----SBCTTCEEEEEE
T ss_pred             CCCCCEEEEeCC--CCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeeh-hhc-----cCCCCCEEEEee
Confidence            356788988884  5677777888776 5699999999999999884432222222111 110     112346999997


Q ss_pred             CCchhhHHHHHHhcccCCEEEEEe
Q 042784          241 NVGGKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       241 ~~g~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      ......+.+..+.|+|+|.++...
T Consensus       154 ~~~~~~~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         154 IYAPCKAEELARVVKPGGWVITAT  177 (268)
T ss_dssp             ESCCCCHHHHHHHEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHhCCCcEEEEEe
Confidence            666667889999999999998764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.14  Score=39.43  Aligned_cols=86  Identities=17%  Similarity=0.065  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+.+|.|.|. |.+|...+++++..|++|+..++.....        ......+   .++.+.+++     .|++.-+..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~--------~~~~~~~---~~l~ell~~-----sDii~i~~p  105 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLP--------LGNATQV---QHLSDLLNM-----SDVVSLHVP  105 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCC--------CTTCEEC---SCHHHHHHH-----CSEEEECCC
T ss_pred             cceEEEEeec-ccchhhhhhhcccccceEeeccccccch--------hhhhhhh---hhHHHHHhh-----ccceeeccc
Confidence            5789999996 9999999999999999999998543211        1112222   235555544     688887665


Q ss_pred             h-h-----hHHHHHHhcccCCEEEEEecc
Q 042784          244 G-K-----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       244 ~-~-----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      - +     .-.+.++.++++..+|.++..
T Consensus       106 lt~~T~~li~~~~l~~mk~~a~lIN~aRG  134 (188)
T d1sc6a1         106 ENPSTKNMMGAKEISLMKPGSLLINASRG  134 (188)
T ss_dssp             SSTTTTTCBCHHHHHHSCTTEEEEECSCS
T ss_pred             CCcchhhhccHHHHhhCCCCCEEEEcCcH
Confidence            2 1     235677888888888776553

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.61  E-value=0.017  Score=47.25  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=30.5

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      +.|||+||++++|.++++.+...|++|+.+++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            3589999999999999999999999999998764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.57  E-value=0.069  Score=44.33  Aligned_cols=34  Identities=15%  Similarity=0.077  Sum_probs=30.5

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      .+|||+||+|-+|...+..+...|.+|++++++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            5699999999999999998888999999998753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.49  E-value=0.051  Score=41.63  Aligned_cols=54  Identities=13%  Similarity=0.150  Sum_probs=39.7

Q ss_pred             HHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh
Q 042784          154 VGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF  209 (356)
Q Consensus       154 ~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~  209 (356)
                      .+|.+...--.|++|+|.|+ |+++.+++..+...| +|+++.|+.++.+.+.+.+
T Consensus         7 ~~l~~~~~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~   60 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEI   60 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHH
T ss_pred             HHHHHhCCCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHH
Confidence            34433332246899999997 999998887776555 9999999999887765444

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.48  E-value=0.073  Score=44.27  Aligned_cols=97  Identities=14%  Similarity=0.075  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC-------CCce-eecCChhhHHHHHHHHCCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFG-------YDDA-FNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g-------~~~v-~~~~~~~~~~~~i~~~~~~  233 (356)
                      ...++|||.|  ||-|..+-.+++..+. +|.+++..++=.+.+++-|.       ...+ +..   .|..+.+++...+
T Consensus        79 ~~pk~VLiiG--gG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~---~Da~~~l~~~~~~  153 (290)
T d1xj5a_          79 PNPKKVLVIG--GGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI---GDGVAFLKNAAEG  153 (290)
T ss_dssp             SCCCEEEEET--CSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE---SCHHHHHHTSCTT
T ss_pred             CCCcceEEec--CCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE---ccHHHHHhhcccc
Confidence            4568999999  4556667788888776 89999988888888873221       1111 111   3455556555455


Q ss_pred             CceEEE-ECCch----------hhHHHHHHhcccCCEEEEEe
Q 042784          234 GIDVYL-DNVGG----------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       234 ~~d~vl-d~~g~----------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      .+|+|| |+...          +.++.+.++|+++|.++.-.
T Consensus       154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            799886 44321          26888999999999988643

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.035  Score=38.99  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD  200 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~  200 (356)
                      +.+|.|.|+ |.+|.+.++-|+.+|.++++.+.+++
T Consensus        11 ~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            457999997 99999999999999999999997655

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=94.38  E-value=0.11  Score=42.21  Aligned_cols=99  Identities=12%  Similarity=0.032  Sum_probs=69.0

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC--CCCce
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      ......+.+||=.|  .|.|..+.++++..+.+|++++.+++-.+.+++.+.....+++.. .+    +.++.  .+.+|
T Consensus        88 ~l~~~~~~~vLD~G--cG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-~d----~~~~~~~~~~fD  160 (254)
T d1xtpa_          88 SLPGHGTSRALDCG--AGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFIL-AS----METATLPPNTYD  160 (254)
T ss_dssp             TSTTCCCSEEEEET--CTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEE-SC----GGGCCCCSSCEE
T ss_pred             hCCCCCCCeEEEec--ccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEE-cc----ccccccCCCccc
Confidence            34456778888888  467888888887766799999999999999986665544444321 11    22332  34699


Q ss_pred             EEEECCc-----h----hhHHHHHHhcccCCEEEEEe
Q 042784          237 VYLDNVG-----G----KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       237 ~vld~~g-----~----~~~~~~~~~l~~~G~~v~~g  264 (356)
                      +|+..--     .    ..+..+.+.|+++|.++..-
T Consensus       161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            9986432     2    24778889999999988653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.34  E-value=0.14  Score=40.84  Aligned_cols=70  Identities=21%  Similarity=0.166  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -.|.+|+|.|- |.+|..+++++...|++|++++.+..+...+....|.. .++.   .       ++..-.+|+++=|.
T Consensus        37 l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~-~~~~---~-------~~~~~~cDIl~PcA  104 (230)
T d1leha1          37 LEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAP---N-------AIYGVTCDIFAPCA  104 (230)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCG---G-------GTTTCCCSEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc-ccCC---c-------ccccccccEecccc
Confidence            46899999996 99999999999999999999999988888887677764 2211   1       11223578877665


Q ss_pred             ch
Q 042784          243 GG  244 (356)
Q Consensus       243 g~  244 (356)
                      -.
T Consensus       105 ~~  106 (230)
T d1leha1         105 LG  106 (230)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.0087  Score=45.45  Aligned_cols=92  Identities=16%  Similarity=0.105  Sum_probs=56.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +|+|.|+ |.+|.+....+...|.+|..+++++++.+... ..+... ........+..+.+     +.+|++|-++...
T Consensus         2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~D~iii~vka~   74 (167)
T d1ks9a2           2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-LVETDGSIFNESLTANDPDFL-----ATSDLLLVTLKAW   74 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-EECTTSCEEEEEEEESCHHHH-----HTCSEEEECSCGG
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-cccCCccccccccccchhhhh-----cccceEEEeeccc
Confidence            6899997 99999988888889999999998876544332 222211 11100001122222     2489999999875


Q ss_pred             hHHHHH----HhcccCCEEEEEec
Q 042784          246 MLEAVL----NHVNVHARIILCGM  265 (356)
Q Consensus       246 ~~~~~~----~~l~~~G~~v~~g~  265 (356)
                      ....++    ..+.+...++.+..
T Consensus        75 ~~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          75 QVSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             GHHHHHHHHHTTSCTTSCEEEECS
T ss_pred             chHHHHHhhccccCcccEEeeccC
Confidence            444444    44555666666543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.19  E-value=0.019  Score=49.59  Aligned_cols=75  Identities=15%  Similarity=0.206  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+-+|||+||+|-+|..++..+...|.+|+++++....... . ...... ++.-+..+.......+  .++|.|+.+++
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~-~-~~~~~~-~~~~D~~~~~~~~~~~--~~~d~Vih~a~   88 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT-E-DMFCDE-FHLVDLRVMENCLKVT--EGVDHVFNLAA   88 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC-G-GGTCSE-EEECCTTSHHHHHHHH--TTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh-h-hcccCc-EEEeechhHHHHHHHh--hcCCeEeeccc
Confidence            46789999999999999999999999999999754332111 1 111111 2111112222222222  36899998774

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.18  E-value=0.032  Score=45.78  Aligned_cols=96  Identities=23%  Similarity=0.169  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCc-eeecCChhhHHHHHHHHC-CCCc
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDD-AFNYNSEMSFDAALTKYF-PNGI  235 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~-v~~~~~~~~~~~~i~~~~-~~~~  235 (356)
                      .+++|++||-.++  |+|..++.+|+.-+++|++++.+++..+.+++   ..|... +-.+.  .|    .+++. .+.+
T Consensus       104 ~~~~g~~VlD~~a--G~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~--~D----~~~~~~~~~~  175 (260)
T d2frna1         104 VAKPDELVVDMFA--GIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN--MD----NRDFPGENIA  175 (260)
T ss_dssp             HCCTTCEEEETTC--TTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC--SC----TTTCCCCSCE
T ss_pred             hcCCccEEEECcc--eEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEE--cc----hHHhccCCCC
Confidence            3689999998884  56777778887755699999999998888764   234432 21121  11    12222 2468


Q ss_pred             eEEEEC-C--chhhHHHHHHhcccCCEEEEEe
Q 042784          236 DVYLDN-V--GGKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       236 d~vld~-~--g~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      |.|+-. -  +...+..+++.++++|.+....
T Consensus       176 D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         176 DRILMGYVVRTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             EEEEECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEECCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence            966542 2  2347888999999999876544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=94.18  E-value=0.08  Score=42.11  Aligned_cols=96  Identities=10%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCce
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGID  236 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d  236 (356)
                      ...+.-.+.+||=.|+  |.|..+..+++ .|.+|++++.+++..+.+++.+.-...+...+       +.... .+.||
T Consensus        14 ~~~~~~~~~~VLDiGc--G~G~~~~~l~~-~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-------~~~~~~~~~fD   83 (225)
T d2p7ia1          14 AFTPFFRPGNLLELGS--FKGDFTSRLQE-HFNDITCVEASEEAISHAQGRLKDGITYIHSR-------FEDAQLPRRYD   83 (225)
T ss_dssp             HHGGGCCSSCEEEESC--TTSHHHHHHTT-TCSCEEEEESCHHHHHHHHHHSCSCEEEEESC-------GGGCCCSSCEE
T ss_pred             HhhhhCCCCcEEEEeC--CCcHHHHHHHH-cCCeEEEEeCcHHHhhhhhccccccccccccc-------ccccccccccc
Confidence            3344455778998884  45776666654 57899999999999999985544321121111       11222 35799


Q ss_pred             EEEECCch-------hhHHHHH-HhcccCCEEEEE
Q 042784          237 VYLDNVGG-------KMLEAVL-NHVNVHARIILC  263 (356)
Q Consensus       237 ~vld~~g~-------~~~~~~~-~~l~~~G~~v~~  263 (356)
                      +|+..---       ..+.... ++|+|+|.++..
T Consensus        84 ~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          84 NIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            99853221       1455666 689999998854

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.17  E-value=0.13  Score=39.93  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=60.9

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCce-eecCChhhHHHHHHHHC-CCCce
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDA-FNYNSEMSFDAALTKYF-PNGID  236 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v-~~~~~~~~~~~~i~~~~-~~~~d  236 (356)
                      +++| +||=.|+  |.|..+..+++ .|++|++++.++...+.+++   +.|.+.+ +...+       +.+.. .+.||
T Consensus        29 ~~~g-rvLDiGc--G~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d-------~~~~~~~~~fD   97 (198)
T d2i6ga1          29 VAPG-RTLDLGC--GNGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVD-------LNTLTFDGEYD   97 (198)
T ss_dssp             SCSC-EEEEETC--TTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECC-------TTTCCCCCCEE
T ss_pred             CCCC-cEEEECC--CCCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhhee-------ccccccccccc
Confidence            4554 8999984  47888887776 58999999999988877653   3344321 11111       11111 24699


Q ss_pred             EEEECCc-----h----hhHHHHHHhcccCCEEEEEec
Q 042784          237 VYLDNVG-----G----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       237 ~vld~~g-----~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +|+...-     .    ..+..+.++|+++|.++....
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          98 FILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9996331     1    267788889999999887644

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.11  E-value=0.047  Score=42.96  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=43.8

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      ++|||+||+|-+|..++..+...|.  +|++..+++.         ....-++... .++.+.... ..+.+|.|+.|+|
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~---------~~~~~~~~~~-~d~~~~~~~-~~~~~d~vi~~~g   71 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL---------AEHPRLDNPV-GPLAELLPQ-LDGSIDTAFCCLG   71 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC---------CCCTTEECCB-SCHHHHGGG-CCSCCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCch---------hhcccccccc-cchhhhhhc-cccchheeeeeee
Confidence            7999999999999999998888886  7777665421         1111122111 234333222 2346899999987


Q ss_pred             h
Q 042784          244 G  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus        72 ~   72 (212)
T d2a35a1          72 T   72 (212)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.08  E-value=0.044  Score=45.68  Aligned_cols=94  Identities=17%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCC------ceeecCChhhHHHHHHHHC-
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEF---GYD------DAFNYNSEMSFDAALTKYF-  231 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~---g~~------~v~~~~~~~~~~~~i~~~~-  231 (356)
                      .+++.+||=.|+  |.|..++.+++. |++|++++.|++..+.+++..   +..      .+.+..    +...-..+. 
T Consensus        54 ~~~~~~vLD~Gc--G~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  126 (292)
T d1xvaa_          54 QHGCHRVLDVAC--GTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN----WLTLDKDVPA  126 (292)
T ss_dssp             HTTCCEEEESSC--TTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC----GGGHHHHSCC
T ss_pred             hcCCCEEEEecC--CCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecc----ccccccccCC
Confidence            356789999884  567778888875 899999999999888776321   111      011111    111111222 


Q ss_pred             CCCceEEEECCch---------------hhHHHHHHhcccCCEEEE
Q 042784          232 PNGIDVYLDNVGG---------------KMLEAVLNHVNVHARIIL  262 (356)
Q Consensus       232 ~~~~d~vld~~g~---------------~~~~~~~~~l~~~G~~v~  262 (356)
                      +..+|.|+.....               ..+..+.+.|+|+|.++.
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            3579999864321               157889999999999875

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.04  E-value=0.092  Score=42.32  Aligned_cols=90  Identities=16%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHC-CCCceEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYF-PNGIDVY  238 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~v  238 (356)
                      .++.+||=.|+ | .|..+..+++ .|.+|++++.|++..+.+++.   .|...-+...+       +.++. .+.||+|
T Consensus        36 ~~~~~vLDiGC-G-~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d-------~~~~~~~~~fD~i  105 (246)
T d1y8ca_          36 LVFDDYLDLAC-G-TGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD-------ISNLNINRKFDLI  105 (246)
T ss_dssp             CCTTEEEEETC-T-TSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCC-------GGGCCCSCCEEEE
T ss_pred             CCCCeEEEEeC-c-CCHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceeeccc-------hhhhccccccccc
Confidence            45679999985 3 5667777766 478999999999988877643   23322222222       22332 4579999


Q ss_pred             EECCch-----------hhHHHHHHhcccCCEEEE
Q 042784          239 LDNVGG-----------KMLEAVLNHVNVHARIIL  262 (356)
Q Consensus       239 ld~~g~-----------~~~~~~~~~l~~~G~~v~  262 (356)
                      +...+.           ..+..+.++|+|+|.++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            974331           157788889999999874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.04  E-value=0.073  Score=37.72  Aligned_cols=47  Identities=17%  Similarity=0.094  Sum_probs=37.5

Q ss_pred             hHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          151 AAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       151 ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      ++...+. ..+..++++|+|.|+ |.+|+-.+..++.+|.+|..+.+++
T Consensus         9 ~~~~~~~-~l~~~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2           9 DHATLVE-ELDYEPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             EHHHHHH-HCCSCCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eHHHHHH-HHhhCCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence            3333343 455678999999997 9999999999999999999988653

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.94  E-value=0.15  Score=38.93  Aligned_cols=92  Identities=15%  Similarity=0.109  Sum_probs=55.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCC--hHHHHHHHHHhCCCceeecCCh-----------hhHHHHHHHHCC
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGS--DDNVKLLKEEFGYDDAFNYNSE-----------MSFDAALTKYFP  232 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s--~~~~~~~~~~~g~~~v~~~~~~-----------~~~~~~i~~~~~  232 (356)
                      +|.|+|- |-+|...++.+.... .+|+++...  ......+. ..+..........           ..+....     
T Consensus         3 KVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-----   75 (178)
T d1b7go1           3 NVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH-RRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-----   75 (178)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH-HTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-----
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhc-ccCcceeccCccceeccccceecCCchhhhh-----
Confidence            6899995 999999999888764 588887542  22333333 3333211111100           0111111     


Q ss_pred             CCceEEEECCchh-hHHHHHHhcccCCEEEEEec
Q 042784          233 NGIDVYLDNVGGK-MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 ~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~  265 (356)
                      .++|+|+||+|.- ..+.+-.+++.+-+++..+.
T Consensus        76 ~~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          76 KTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             HHCSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             hcCCEEEECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence            1489999999973 56677778887778876544

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=93.90  E-value=1.3  Score=36.12  Aligned_cols=106  Identities=13%  Similarity=0.190  Sum_probs=67.6

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC---ChHHHHHHHHHhCCCceeecC----------------
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG---SDDNVKLLKEEFGYDDAFNYN----------------  218 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~---s~~~~~~~~~~~g~~~v~~~~----------------  218 (356)
                      +.+.+.++.+|+... +|..|+++...++.+|.+.+++.+   ++.+.+.++ .+|+..++...                
T Consensus        53 ~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~v~~v~~~~~~~~a~~~~~~~~~  130 (292)
T d2bhsa1          53 KRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMR-AYGAELILVTKEQGMEGARDLALEMAN  130 (292)
T ss_dssp             HTTSCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHH-HTTCEEEEECTTTHHHHHHHHHHHHHH
T ss_pred             HhCCcCCCceeeeec-ccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHH-HhCCCcceeecccchHHHHHHHhhccc
Confidence            345566666665555 699999999999999995554443   556777787 88986332111                


Q ss_pred             -----------Ch-------hhHHHHHHHHCCCCceEEEECCchh----hHHHHHHhcccCCEEEEEec
Q 042784          219 -----------SE-------MSFDAALTKYFPNGIDVYLDNVGGK----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       219 -----------~~-------~~~~~~i~~~~~~~~d~vld~~g~~----~~~~~~~~l~~~G~~v~~g~  265 (356)
                                 +.       .....+|.+..++.+|+++.++|+.    .+...++...+..+++.+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep  199 (292)
T d2bhsa1         131 RGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQP  199 (292)
T ss_dssp             HTSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred             cccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEecc
Confidence                       10       0122334444455689999988763    34456666777788776643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.89  E-value=0.79  Score=33.42  Aligned_cols=78  Identities=10%  Similarity=-0.027  Sum_probs=53.3

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCC--CCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFP--NGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~--~~~d~vld~~g  243 (356)
                      .+|.|.|+.|.+|...+..++..|.+|.+.++.+....... .-+++.++.........+.+.++.+  ..=.+++|++.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI-LANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH-HTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh-hhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence            58999997799999999999999999999998776555544 4466656555443344444444321  11247788876


Q ss_pred             h
Q 042784          244 G  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus        89 v   89 (152)
T d2pv7a2          89 V   89 (152)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.81  E-value=0.19  Score=42.04  Aligned_cols=99  Identities=16%  Similarity=0.119  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC-CceeecCC----hhhHHHHHHHHCCCCce
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGY-DDAFNYNS----EMSFDAALTKYFPNGID  236 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~-~~v~~~~~----~~~~~~~i~~~~~~~~d  236 (356)
                      ...++|||.|  ||-|..+-.+++.... +|.+++..++=.+.+++-|.. ...++...    ..|..+.+++ +.+.+|
T Consensus       105 ~~pk~VLIiG--gG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yD  181 (312)
T d2b2ca1         105 PDPKRVLIIG--GGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFD  181 (312)
T ss_dssp             SSCCEEEEES--CTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEE
T ss_pred             CCCCeEEEeC--CCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCC
Confidence            4467999999  5556667788888776 899999888888888843322 11111100    0345555654 456799


Q ss_pred             EEEE-CC---ch-------hhHHHHHHhcccCCEEEEEe
Q 042784          237 VYLD-NV---GG-------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       237 ~vld-~~---g~-------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      +||- ..   +.       +.+..+.++|+++|.++.-+
T Consensus       182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            9983 21   21       25778889999999998654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.76  E-value=0.28  Score=37.20  Aligned_cols=95  Identities=12%  Similarity=0.005  Sum_probs=61.1

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce--eecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA--FNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v--~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      .+|-+.|. |.+|...+.-+...|.+|++.++++++.+.+. +.++...  .......+..+.+     ...|.++-++.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~-----~~~~~ii~~~~   75 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL-ANEAKGTKVLGAHSLEEMVSKL-----KKPRRIILLVK   75 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH-HTTTTTSSCEECSSHHHHHHHB-----CSSCEEEECSC
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-Hhccccccccchhhhhhhhhhh-----cccceEEEecC
Confidence            46889996 99999988888888999999999999998887 4444211  1111112222221     23677777665


Q ss_pred             hh-----hHHHHHHhcccCCEEEEEeccc
Q 042784          244 GK-----MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       244 ~~-----~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ..     ..+.....++++..++.++...
T Consensus        76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~  104 (176)
T d2pgda2          76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSE  104 (176)
T ss_dssp             TTHHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred             chHHHHHHHHHHHhccccCcEEEecCcch
Confidence            42     3455566677777777665543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.024  Score=36.98  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=30.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD  200 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~  200 (356)
                      ++|.|.|+ |.+|.+.++-++.+|.++.+.+..++
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            47999997 99999999999999999999986543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.74  E-value=0.13  Score=38.58  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      .+|.+.|. |.+|...+.-+...|.+|++.+++.++.+.+. +.+....      .+..+.+     ...|+++-|+...
T Consensus         2 ~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~-~~~~~~~------~~~~e~~-----~~~diii~~v~~~   68 (162)
T d3cuma2           2 KQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-AAGASAA------RSARDAV-----QGADVVISMLPAS   68 (162)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-HTTCEEC------SSHHHHH-----TSCSEEEECCSCH
T ss_pred             CEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhhhhhhh-hhhcccc------chhhhhc-----cccCeeeecccch
Confidence            46889996 99999888777778999999999999988887 6665321      1222333     2378888887753


Q ss_pred             -hHHH-------HHHhcccCCEEEEEeccc
Q 042784          246 -MLEA-------VLNHVNVHARIILCGMIS  267 (356)
Q Consensus       246 -~~~~-------~~~~l~~~G~~v~~g~~~  267 (356)
                       ....       ....+.++..++.++...
T Consensus        69 ~~~~~v~~~~~~~~~~l~~g~iiid~st~~   98 (162)
T d3cuma2          69 QHVEGLYLDDDGLLAHIAPGTLVLECSTIA   98 (162)
T ss_dssp             HHHHHHHHSTTCHHHHSCTTCEEEECSCCC
T ss_pred             hhHHHHHhccccccccCCCCCEEEECCCCC
Confidence             2222       233466666666665543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.057  Score=45.46  Aligned_cols=97  Identities=18%  Similarity=0.181  Sum_probs=55.5

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHH---HHHHHhCCCceeecCChhhHHHHHHHHC
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVK---LLKEEFGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~---~~~~~~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      +.+...+.+|++||-.|+ | .|+.++.+|+ .|+ +|++++.++.-..   ..+ +.+....+.... .+    +.++.
T Consensus        27 i~~~~~~~~~~~VLDiGc-G-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~-~~~~~~~i~~~~-~~----~~~l~   97 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGC-G-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIR-LNKLEDTITLIK-GK----IEEVH   97 (311)
T ss_dssp             HHHCGGGTTTCEEEEETC-T-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHH-HTTCTTTEEEEE-SC----TTTSC
T ss_pred             HHhccccCCcCEEEEECC-C-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHH-HhCCCccceEEE-ee----HHHhc
Confidence            443445678999999995 4 6677776666 477 9999998875432   222 334322221110 11    22222


Q ss_pred             --CCCceEEEEC-Cch----h-----hHHHHHHhcccCCEEE
Q 042784          232 --PNGIDVYLDN-VGG----K-----MLEAVLNHVNVHARII  261 (356)
Q Consensus       232 --~~~~d~vld~-~g~----~-----~~~~~~~~l~~~G~~v  261 (356)
                        ...+|+|+.- .+.    +     .+....+.|+|+|+++
T Consensus        98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence              2479999852 221    1     2233345799999876

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.066  Score=45.45  Aligned_cols=72  Identities=14%  Similarity=0.107  Sum_probs=46.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCCcee--ecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKEEFGYDDAF--NYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~~~g~~~v~--~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|||+||+|-+|...++.+...| .+|++++....+...+.+.-.. ..+  |..+..++.+.+.    .++|+|+.+++
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~-~~i~~Di~~~~~~~~~~~----~~~d~Vih~a~   76 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHF-HFVEGDISIHSEWIEYHV----KKCDVVLPLVA   76 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTE-EEEECCTTTCSHHHHHHH----HHCSEEEECBC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCe-EEEECccCChHHHHHHHH----hCCCccccccc
Confidence            69999999999999998887788 5999998765554443311111 122  2222134444332    24899999876

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.59  E-value=0.11  Score=40.21  Aligned_cols=83  Identities=16%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce----eecC-C---hhhHHHHHHHHCCCCceE
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA----FNYN-S---EMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v----~~~~-~---~~~~~~~i~~~~~~~~d~  237 (356)
                      .+|.|.|+ |..|.+...++...|.+|...+++++..+.+. +-+....    +... +   ..++.+.+     .+.|+
T Consensus         8 ~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~-~~~~n~~yl~~~~l~~~i~~t~~l~~a~-----~~ad~   80 (189)
T d1n1ea2           8 NKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVN-EKRENVLFLKGVQLASNITFTSDVEKAY-----NGAEI   80 (189)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHH-HHTBCTTTSTTCBCCTTEEEESCHHHHH-----TTCSC
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHh-hcccccccccccccccccccchhhhhcc-----CCCCE
Confidence            47999997 99999988888888889999999998888876 3332110    0000 0   13455544     34899


Q ss_pred             EEECCchhhHHHHHHhcc
Q 042784          238 YLDNVGGKMLEAVLNHVN  255 (356)
Q Consensus       238 vld~~g~~~~~~~~~~l~  255 (356)
                      ++-++....+...++.++
T Consensus        81 iiiavPs~~~~~~~~~~~   98 (189)
T d1n1ea2          81 ILFVIPTQFLRGFFEKSG   98 (189)
T ss_dssp             EEECSCHHHHHHHHHHHC
T ss_pred             EEEcCcHHHHHHHHHHHH
Confidence            999999876666665543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.53  E-value=0.14  Score=34.66  Aligned_cols=72  Identities=18%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             CCCCCCEEEEEcCCChHHHHH-HHHHHHCCCEEEEEeCCh-HHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEE
Q 042784          161 QPKSGSNVFVSAAAGGVGMFA-GQLAKLKGCKVVGSTGSD-DNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~-i~la~~~G~~V~~~~~s~-~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      ..+..+++.+.|. |++|+.+ +++++..|++|.+.|... ...+.++ +.|.. +...+....    +     .++|+|
T Consensus         4 ~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~-~~Gi~-v~~g~~~~~----i-----~~~d~v   71 (96)
T d1p3da1           4 EMRRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRLA-QAGAK-IYIGHAEEH----I-----EGASVV   71 (96)
T ss_dssp             CCTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHH-HTTCE-EEESCCGGG----G-----TTCSEE
T ss_pred             cchhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHH-HCCCe-EEECCcccc----C-----CCCCEE
Confidence            3566789999997 9999887 789999999999999753 3445555 67875 443332111    1     347888


Q ss_pred             EECCch
Q 042784          239 LDNVGG  244 (356)
Q Consensus       239 ld~~g~  244 (356)
                      +-+.+-
T Consensus        72 V~S~AI   77 (96)
T d1p3da1          72 VVSSAI   77 (96)
T ss_dssp             EECTTS
T ss_pred             EECCCc
Confidence            876653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.52  E-value=0.064  Score=37.99  Aligned_cols=38  Identities=11%  Similarity=0.020  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      +++..++|+|.|| |.+|+-++..++.+|.+|..+.+++
T Consensus        18 ~l~~p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             ccCCCCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            4556789999998 9999999999999999999998653

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.42  E-value=0.051  Score=43.10  Aligned_cols=99  Identities=14%  Similarity=0.156  Sum_probs=62.0

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHH---C
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKY---F  231 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~---~  231 (356)
                      .+.....+||=+|  .+.|..++.+|+++  +.+|+.++.+++..+.+++   ..|....+.... .+..+.+.++   .
T Consensus        52 v~~~kpk~ILEiG--t~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~-Gd~~e~l~~l~~~~  128 (214)
T d2cl5a1          52 IREYSPSLVLELG--AYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILN-GASQDLIPQLKKKY  128 (214)
T ss_dssp             HHHHCCSEEEEEC--CTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE-SCHHHHGGGHHHHS
T ss_pred             HHhhCCCEEEEEc--cCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeee-ccccccccchhhcc
Confidence            3344557999999  56677888888876  5699999998887776653   456543333222 3333333332   2


Q ss_pred             -CCCceEEE-ECCchh-----hHHHHHHhcccCCEEE
Q 042784          232 -PNGIDVYL-DNVGGK-----MLEAVLNHVNVHARII  261 (356)
Q Consensus       232 -~~~~d~vl-d~~g~~-----~~~~~~~~l~~~G~~v  261 (356)
                       .+.+|.++ |..-..     .+..+++.|+++|.++
T Consensus       129 ~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv  165 (214)
T d2cl5a1         129 DVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLL  165 (214)
T ss_dssp             CCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cccccceeeecccccccccHHHHHHHhCccCCCcEEE
Confidence             24699886 433222     3455667899999765

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.37  E-value=0.036  Score=42.85  Aligned_cols=35  Identities=9%  Similarity=0.093  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChH
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDD  200 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~  200 (356)
                      +++|+|.|| |..|+.++..++..|+ .|+++++++.
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            578999998 9999999999999999 5888887654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.30  E-value=0.11  Score=37.05  Aligned_cols=43  Identities=23%  Similarity=0.136  Sum_probs=34.7

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      +.+...-..+++|+|.|+ |.+|+-+++.+..+|.+|.++.+.+
T Consensus        21 i~~~~~~~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             HHHHHTCTTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             HHHHhhccCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence            333333456789999998 9999999999999999999998653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.17  Score=41.79  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC-------CCceeecCChhhHHHHHHHHCCC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFG-------YDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g-------~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ....++|||.|  ||-|..+-.+++..+. +|.+++-.++=.+.+++-|.       -..+-...  .|..+.+++ +.+
T Consensus        76 ~~~pk~vLiiG--gG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~--~Da~~~l~~-~~~  150 (285)
T d2o07a1          76 HPNPRKVLIIG--GGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV--GDGFEFMKQ-NQD  150 (285)
T ss_dssp             SSSCCEEEEEE--CTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SCHHHHHHT-CSS
T ss_pred             CcCcCeEEEeC--CCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE--ccHHHHHhc-CCC
Confidence            34568999999  4556667778888766 99999988888888873221       11111111  344445554 345


Q ss_pred             CceEEE-ECCch----------hhHHHHHHhcccCCEEEEEe
Q 042784          234 GIDVYL-DNVGG----------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       234 ~~d~vl-d~~g~----------~~~~~~~~~l~~~G~~v~~g  264 (356)
                      .+|+|+ |....          +.++.+.+.|+++|.++.-.
T Consensus       151 ~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         151 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             CEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            799997 43321          25788889999999988643

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=93.20  E-value=0.16  Score=42.68  Aligned_cols=100  Identities=14%  Similarity=0.057  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCce-eecCChhhHHHHHHHHCCCCceEE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDA-FNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v-~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      .+|++||=.++  +.|..++++|+ .+.+|++++.++...+.+++   ..|.+.+ +...+..++.+.+.+ .++.||+|
T Consensus       144 ~~g~rVLDl~~--gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~-~~~~fD~V  219 (318)
T d1wxxa2         144 FRGERALDVFS--YAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK-EGERFDLV  219 (318)
T ss_dssp             CCEEEEEEETC--TTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-TTCCEEEE
T ss_pred             hCCCeeeccCC--CCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHh-hhcCCCEE
Confidence            46889887764  33445566664 34599999999998888764   2444322 112221233333222 24579999


Q ss_pred             EE---CCc--h-----------hhHHHHHHhcccCCEEEEEecc
Q 042784          239 LD---NVG--G-----------KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       239 ld---~~g--~-----------~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      +-   +.+  .           ..+..+++.|+|+|.++.+..+
T Consensus       220 i~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         220 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            84   121  1           1456788899999999877554

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.22  Score=42.09  Aligned_cols=31  Identities=23%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEe
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGST  196 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~  196 (356)
                      ++|||+||+|-+|...+..+...|.+|++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            6899999999999999998888999999986

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.15  E-value=1  Score=35.63  Aligned_cols=96  Identities=14%  Similarity=0.025  Sum_probs=61.2

Q ss_pred             CEEEEEcCCCh----HHHHHHHHHHHC--CCEEEEEe-CChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEE
Q 042784          166 SNVFVSAAAGG----VGMFAGQLAKLK--GCKVVGST-GSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       166 ~~VlV~g~~g~----vG~~~i~la~~~--G~~V~~~~-~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      =+|.|.|. |.    ++...+...+..  ++++++++ ++.++.+.+.++++....-.|.+   +.+.+.   ...+|+|
T Consensus        17 irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~---~~~iD~V   89 (237)
T d2nvwa1          17 IRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDS---LESFAQ---YKDIDMI   89 (237)
T ss_dssp             EEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESC---HHHHHH---CTTCSEE
T ss_pred             eEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecc---hhhccc---cccccee
Confidence            47899997 54    333334444443  56888654 55666666655888765555543   444333   2579999


Q ss_pred             EECCchh-hHHHHHHhcccC-----CEEEEEecccc
Q 042784          239 LDNVGGK-MLEAVLNHVNVH-----ARIILCGMISQ  268 (356)
Q Consensus       239 ld~~g~~-~~~~~~~~l~~~-----G~~v~~g~~~~  268 (356)
                      +.|+... +.+.+..+|+.+     +.-|++.-+..
T Consensus        90 ~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla  125 (237)
T d2nvwa1          90 VVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALA  125 (237)
T ss_dssp             EECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSS
T ss_pred             eccCCCcchhhHHHHHHHhcccccCCceEEEecccc
Confidence            9999875 677777777654     45677766554

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.12  E-value=0.054  Score=43.93  Aligned_cols=34  Identities=18%  Similarity=0.122  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      ..++|+|.|| |..|+++...++..|.+|++++++
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERS   36 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4689999998 999999999999999999999864

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=93.08  E-value=0.076  Score=43.77  Aligned_cols=62  Identities=13%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|||+||+|-+|...+..+...| ++++++....           ....|..+...+.+.+++.   ++|+||.++|
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g-~~v~~~~~~~-----------~~~~Dl~~~~~~~~~i~~~---~~D~Vih~Aa   63 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG-NLIALDVHSK-----------EFCGDFSNPKGVAETVRKL---RPDVIVNAAA   63 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS-EEEEECTTCS-----------SSCCCTTCHHHHHHHHHHH---CCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC-CEEEEECCCc-----------cccCcCCCHHHHHHHHHHc---CCCEEEEecc
Confidence            59999999999999888777666 4555553321           1123444434455555542   5899999886

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.05  E-value=0.041  Score=46.57  Aligned_cols=91  Identities=18%  Similarity=0.167  Sum_probs=53.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHH---HHhCCCceeecCChhhHHHHHHHHC--CCCc
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLK---EEFGYDDAFNYNSEMSFDAALTKYF--PNGI  235 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~---~~~g~~~v~~~~~~~~~~~~i~~~~--~~~~  235 (356)
                      +.+|++||-.|+ | .|++++.+|+ .|+ +|++++.++.- ..++   +..+....+.... .+    +.++.  ...+
T Consensus        31 ~~~~~~VLDiGc-G-~G~ls~~aa~-~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~-~~----~~~~~~~~~~~  101 (316)
T d1oria_          31 LFKDKVVLDVGS-G-TGILCMFAAK-AGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIK-GK----VEEVELPVEKV  101 (316)
T ss_dssp             HHTTCEEEEETC-T-TSHHHHHHHH-TTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEE-SC----TTTCCCSSSCE
T ss_pred             cCCcCEEEEEec-C-CcHHHHHHHH-hCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEe-cc----HHHccccccee
Confidence            457999999985 4 4777776666 677 89999977642 2222   1334432221110 11    12222  2479


Q ss_pred             eEEEEC-Cch---------hhHHHHHHhcccCCEEE
Q 042784          236 DVYLDN-VGG---------KMLEAVLNHVNVHARII  261 (356)
Q Consensus       236 d~vld~-~g~---------~~~~~~~~~l~~~G~~v  261 (356)
                      |+|+.. .+.         ..+....+.|+|+|+++
T Consensus       102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         102 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            999753 221         13445567999999876

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.16  Score=40.11  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHC--CCCce
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYF--PNGID  236 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~--~~~~d  236 (356)
                      ...++.+||=.|  .|.|..+..+++..+.+|++++.|++-.+.+++.+...  ..+.+.. .+    +.++.  .+.+|
T Consensus        57 ~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~-~d----~~~~~~~~~~fD  129 (222)
T d2ex4a1          57 NKTGTSCALDCG--AGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFC-CG----LQDFTPEPDSYD  129 (222)
T ss_dssp             -CCCCSEEEEET--CTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEE-CC----GGGCCCCSSCEE
T ss_pred             CCCCCCEEEEec--cCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccc-cc----cccccccccccc
Confidence            356778999998  56787788887776779999999999999888543321  1112111 11    22222  35799


Q ss_pred             EEEECC-----ch----hhHHHHHHhcccCCEEEEEec
Q 042784          237 VYLDNV-----GG----KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       237 ~vld~~-----g~----~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      +|+...     ..    ..+..+.+.|+++|.++....
T Consensus       130 ~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         130 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            998732     22    257788899999999987644

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=92.97  E-value=0.2  Score=41.25  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=66.1

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHC-CCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK--GCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYF-PNG  234 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~--G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~-~~~  234 (356)
                      ..++.++.+||=.|.  |.|..+..+++..  +.+|++++.++...+.+++.+.... -+.+.. .+.    .++. ++.
T Consensus        22 ~~~~~~~~~ILDiGc--G~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~-~d~----~~~~~~~~   94 (281)
T d2gh1a1          22 VWKITKPVHIVDYGC--GYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE-GDA----TEIELNDK   94 (281)
T ss_dssp             TSCCCSCCEEEEETC--TTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEE-SCT----TTCCCSSC
T ss_pred             HhccCCcCEEEEecC--cCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccc-ccc----ccccccCC
Confidence            345677889998884  4688888888875  4699999999998888874332210 111111 111    1222 346


Q ss_pred             ceEEEECCc-----h--hhHHHHHHhcccCCEEEEEe
Q 042784          235 IDVYLDNVG-----G--KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       235 ~d~vld~~g-----~--~~~~~~~~~l~~~G~~v~~g  264 (356)
                      +|+|+....     +  ..+..+.+.|+|+|.++...
T Consensus        95 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          95 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            999987543     2  26888999999999988654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.94  E-value=0.65  Score=34.90  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCC--hHHHHHHHHHhCCCceeecCCh-hhHHHH-------HHHHCCCCc
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGS--DDNVKLLKEEFGYDDAFNYNSE-MSFDAA-------LTKYFPNGI  235 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s--~~~~~~~~~~~g~~~v~~~~~~-~~~~~~-------i~~~~~~~~  235 (356)
                      +|.|+|- |-+|...++++...+ .+++++...  ......+. .++.+......+. ..+.+.       +.++. .++
T Consensus         3 ~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-~~v   79 (171)
T d1cf2o1           3 AVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMAL-KKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEA   79 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHH-HTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTC
T ss_pred             EEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHH-hcCCceEecccccceeecccCcccCCChhHhh-cCC
Confidence            6899995 999999999887666 477766532  23334444 5554422221110 001000       00000 259


Q ss_pred             eEEEECCch-hhHHHHHHhcccCCEEEEEecc
Q 042784          236 DVYLDNVGG-KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       236 d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      |+|+||+|. ...+.+-..+..+.+++..+..
T Consensus        80 DvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~  111 (171)
T d1cf2o1          80 DIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (171)
T ss_dssp             SEEEECCSTTHHHHHHHHHHHTTCEEEECTTS
T ss_pred             CEEEEccCCCCCHHHHHHHHHcCCCEEEECCC
Confidence            999999997 3556677778888888876554

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.073  Score=40.83  Aligned_cols=37  Identities=22%  Similarity=0.175  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      ...+++|+|.|| |+.|+.++..+...|.+|++.+..+
T Consensus        40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            456789999997 9999999999999999999998654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.80  E-value=0.29  Score=32.48  Aligned_cols=66  Identities=21%  Similarity=0.321  Sum_probs=45.7

Q ss_pred             CEEEEEcCCChHHHHH-HHHHHHCCCEEEEEeCCh-HHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          166 SNVFVSAAAGGVGMFA-GQLAKLKGCKVVGSTGSD-DNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~-i~la~~~G~~V~~~~~s~-~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      -+|-+.|. |++|+.+ +++++..|+.|.+.|..+ +..+.++ ++|.. ++..++...+         .++|+|+-+.+
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~-~~Gi~-i~~gh~~~~i---------~~~d~vV~SsA   69 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERTAYLR-KLGIP-IFVPHSADNW---------YDPDLVIKTPA   69 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTCC-EESSCCTTSC---------CCCSEEEECTT
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHH-HCCCe-EEeeeccccc---------CCCCEEEEecC
Confidence            46788897 9999865 588899999999999776 3455666 88976 3322221111         34788887655

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.78  E-value=0.091  Score=37.01  Aligned_cols=35  Identities=23%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      ..++++|.|| |.+|+-+++.+..+|.+|..+.+.+
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECC-CccceeeeeeecccccEEEEEEecc
Confidence            3589999998 9999999999999999999998654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=92.77  E-value=0.23  Score=41.53  Aligned_cols=97  Identities=20%  Similarity=0.147  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC-----C--CceeecCChhhHHHHHHHHCCCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFG-----Y--DDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g-----~--~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ...++|||.|+  |.|..+-++++.... +|.+++..++=.+.+++-|.     +  +.-+...- .|..+.+++ +++.
T Consensus        76 ~~pk~VLiiG~--G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~-~Da~~~l~~-~~~~  151 (312)
T d1uira_          76 PEPKRVLIVGG--GEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI-DDARAYLER-TEER  151 (312)
T ss_dssp             SCCCEEEEEEC--TTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE-SCHHHHHHH-CCCC
T ss_pred             CCcceEEEeCC--CchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE-chHHHHhhh-cCCc
Confidence            44689999994  456677778887655 99999988888887774331     1  10011100 345555554 4467


Q ss_pred             ceEEE-EC---Cch----------hhHHHHHHhcccCCEEEEE
Q 042784          235 IDVYL-DN---VGG----------KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       235 ~d~vl-d~---~g~----------~~~~~~~~~l~~~G~~v~~  263 (356)
                      +|+|| |.   .+.          +.+..+.+.|+++|.++.-
T Consensus       152 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            99997 33   221          2567888999999988753

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=92.63  E-value=0.15  Score=41.98  Aligned_cols=98  Identities=15%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh----CC--CceeecCChhhHHHHHHHHCCCCc
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEF----GY--DDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~----g~--~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ...++|||.|  ||-|..+-.+++..+. +|.+++..++=.+.+++-+    ++  +.-++... .|..+.+++ +...+
T Consensus        74 ~~p~~vLiiG--gG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~-~D~~~~l~~-~~~~y  149 (274)
T d1iy9a_          74 PNPEHVLVVG--GGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV-DDGFMHIAK-SENQY  149 (274)
T ss_dssp             SSCCEEEEES--CTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE-SCSHHHHHT-CCSCE
T ss_pred             CCcceEEecC--CCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEe-chHHHHHhh-cCCCC
Confidence            4568999999  5557777788888776 9999998888777777322    22  11111111 233444544 34579


Q ss_pred             eEEE-ECCc----------hhhHHHHHHhcccCCEEEEEe
Q 042784          236 DVYL-DNVG----------GKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       236 d~vl-d~~g----------~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      |+|+ |...          .+.++.+.++|+++|.++.-.
T Consensus       150 DvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            9997 3322          136888999999999988643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.55  E-value=0.33  Score=35.70  Aligned_cols=39  Identities=23%  Similarity=0.209  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNV  202 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~  202 (356)
                      ..+.+|.|.|+ |.+|..+++.+...|.  +++.++..+++.
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~   44 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKA   44 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccc
Confidence            45678999997 9999998888887775  899999877663

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.53  E-value=0.11  Score=36.86  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      ++++++++|.|| |.+|+-++..++.+|.+|..+.+++
T Consensus        27 ~~~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             hhcCCeEEEECc-chhHHHHHHHhhcccceEEEEeecc
Confidence            467899999998 9999999999999999999998664

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.11  Score=38.32  Aligned_cols=82  Identities=16%  Similarity=0.030  Sum_probs=44.4

Q ss_pred             EEEEEcCCChHHHHHHHH-HHHCC---CEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          167 NVFVSAAAGGVGMFAGQL-AKLKG---CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~l-a~~~G---~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +|.|.||+|-+|.-.+++ +.+..   .+++....+...............+.+..+   .. .+     .++|++|-|+
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~---~~-~~-----~~~DivF~a~   73 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFD---LE-AL-----KALDIIVTCQ   73 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTC---HH-HH-----HTCSEEEECS
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccc---hh-hh-----hcCcEEEEec
Confidence            799999999999999974 54433   367666644322111110111111222211   11 11     3589999999


Q ss_pred             chhhHHHHHH-hcccC
Q 042784          243 GGKMLEAVLN-HVNVH  257 (356)
Q Consensus       243 g~~~~~~~~~-~l~~~  257 (356)
                      +.+.-..... +...+
T Consensus        74 ~~~~s~~~~~~~~~~g   89 (146)
T d1t4ba1          74 GGDYTNEIYPKLRESG   89 (146)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CchHHHHhhHHHHhcC
Confidence            9874444444 44443

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.43  E-value=1.2  Score=31.41  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG  197 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~  197 (356)
                      +.++.+|+|.|.+|.-|..-.+..+..|.+|++-+.
T Consensus        12 i~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVt   47 (130)
T d1euca1          12 VDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTT   47 (130)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             EcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeec
Confidence            577889999999999999999999999999887773

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.41  E-value=0.36  Score=34.37  Aligned_cols=91  Identities=13%  Similarity=0.062  Sum_probs=60.7

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      ++++|.|. |.+|..+++.++  |..|++++..+++.+.++ ..|.. ++..+  ..-.+.+++..=..++.++-++.++
T Consensus         1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~-~~~~~-~i~Gd--~~~~~~L~~a~i~~A~~vi~~~~~d   73 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKVL-RSGAN-FVHGD--PTRVSDLEKANVRGARAVIVNLESD   73 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHHH-HTTCE-EEESC--TTSHHHHHHTTCTTCSEEEECCSSH
T ss_pred             CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHHH-hcCcc-ccccc--cCCHHHHHHhhhhcCcEEEEeccch
Confidence            35889997 999988877664  557788888888888887 66765 33222  2223445554334689999888764


Q ss_pred             ----hHHHHHHhcccCCEEEEE
Q 042784          246 ----MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       246 ----~~~~~~~~l~~~G~~v~~  263 (356)
                          ......+.+.|..+++..
T Consensus        74 ~~n~~~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          74 SETIHCILGIRKIDESVRIIAE   95 (129)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEE
T ss_pred             hhhHHHHHHHHHHCCCceEEEE
Confidence                334455667777666644

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=92.33  E-value=0.41  Score=37.74  Aligned_cols=94  Identities=14%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             CEEEEEcCCChHHHH-HHHHHHHC-CCEEEEE-eCChHHHHHHHHHhCCC--ceeecCChhhHHHHHHHHCCCCceEEEE
Q 042784          166 SNVFVSAAAGGVGMF-AGQLAKLK-GCKVVGS-TGSDDNVKLLKEEFGYD--DAFNYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~-~i~la~~~-G~~V~~~-~~s~~~~~~~~~~~g~~--~v~~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      =+|.|.|. |.+|.- .+...+.. +++|+++ ++++++.+.+.+++|..  .+..+++   +.+.+.   ...+|+|+-
T Consensus        34 iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d---~~ell~---~~~iD~V~I  106 (221)
T d1h6da1          34 FGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN---FDKIAK---DPKIDAVYI  106 (221)
T ss_dssp             EEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSS---GGGGGG---CTTCCEEEE
T ss_pred             EEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCc---hhhhcc---cccceeeee
Confidence            37899996 999863 44443433 6788755 45677777776688864  2333433   222221   347999999


Q ss_pred             CCchh-hHHHHHHhcccCCEEEEEeccc
Q 042784          241 NVGGK-MLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       241 ~~g~~-~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      |+... +...+.++++.+-. +++.-+.
T Consensus       107 ~tp~~~H~~~~~~al~~gk~-v~~EKPl  133 (221)
T d1h6da1         107 ILPNSLHAEFAIRAFKAGKH-VMCEKPM  133 (221)
T ss_dssp             CSCGGGHHHHHHHHHHTTCE-EEECSSC
T ss_pred             ccchhhhhhHHHHhhhcchh-hhcCCCc
Confidence            99875 67788888877544 5565543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.27  E-value=0.23  Score=40.86  Aligned_cols=97  Identities=14%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC------------ceeecCChhhHHHHHHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD------------DAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~------------~v~~~~~~~~~~~~i~~~  230 (356)
                      ...++|||.|+  |-|..+-++++....+|.+++..++=.+.+++-|+..            .-+.... .|..+.+++ 
T Consensus        71 ~~p~~vLiiG~--G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~-~Da~~~l~~-  146 (276)
T d1mjfa_          71 PKPKRVLVIGG--GDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-GDGFEFIKN-  146 (276)
T ss_dssp             SCCCEEEEEEC--TTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-SCHHHHHHH-
T ss_pred             CCCceEEEecC--CchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE-ChHHHHHhc-
Confidence            45689999995  4455556666654449999998888888887433321            1011111 233344443 


Q ss_pred             CCCCceEEE-ECCch----------hhHHHHHHhcccCCEEEEEe
Q 042784          231 FPNGIDVYL-DNVGG----------KMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       231 ~~~~~d~vl-d~~g~----------~~~~~~~~~l~~~G~~v~~g  264 (356)
                       .+.+|+|| |+...          +.+..+.++|+++|.++.-+
T Consensus       147 -~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         147 -NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             -CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence             35799997 44321          25788999999999987543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.25  E-value=0.07  Score=44.05  Aligned_cols=33  Identities=27%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      +++|+|+|| |..|+.++..++..|.+|.+++.+
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence            578999997 999999999999999999999854

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.12  E-value=0.077  Score=45.24  Aligned_cols=38  Identities=21%  Similarity=0.142  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHH
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDN  201 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~  201 (356)
                      .-++|+|+||+|.+|..++..+...|.+|++++++.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            34789999999999999999999999999999986543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.01  E-value=0.26  Score=42.43  Aligned_cols=93  Identities=15%  Similarity=0.088  Sum_probs=63.3

Q ss_pred             EcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHH---hCCCce--------------eecCChhhHHHHHHHHCC
Q 042784          171 SAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEE---FGYDDA--------------FNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       171 ~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~---~g~~~v--------------~~~~~~~~~~~~i~~~~~  232 (356)
                      ..+-++.|.-.++.|+..|+ +|++.+.+++-.+.+++.   .+....              +.... .+....+. ..+
T Consensus        50 LD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~-~Da~~~~~-~~~  127 (375)
T d2dula1          50 LDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINH-DDANRLMA-ERH  127 (375)
T ss_dssp             EESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEE-SCHHHHHH-HST
T ss_pred             EEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeeh-hhhhhhhH-hhc
Confidence            33447789999999999898 999999999988888743   222110              11000 23332232 234


Q ss_pred             CCceEE-EECCch--hhHHHHHHhcccCCEEEEEec
Q 042784          233 NGIDVY-LDNVGG--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       233 ~~~d~v-ld~~g~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ..||+| ||..|+  +.+..++++++.+|.+.....
T Consensus       128 ~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         128 RYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             TCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEec
Confidence            579966 799987  488999999999998876654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.81  E-value=0.064  Score=44.20  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=31.0

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      ++|||+||+|-+|..++..+...|.+|++++++.
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            6799999999999999999988999999998754

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=1.3  Score=30.67  Aligned_cols=87  Identities=17%  Similarity=0.264  Sum_probs=52.6

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +.+..+|+|.|.+|.-|..-.+..+..|.+|++-+...+.-+.   -+| -.++     ....+.+++.   ++|.-+-.
T Consensus         3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~---~~g-iPVf-----~sV~eAv~~~---~~~~SvIf   70 (119)
T d2nu7a1           3 IDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT---HLG-LPVF-----NTVREAVAAT---GATASVIY   70 (119)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEE---ETT-EEEE-----SSHHHHHHHH---CCCEEEEC
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcc---cCC-Cchh-----hHHHHHHHHh---CCCeEEEe
Confidence            4567899999999999999999999999998877733221111   112 1233     2344444442   24555555


Q ss_pred             Cchh-hHHHHHHhcccCCEE
Q 042784          242 VGGK-MLEAVLNHVNVHARI  260 (356)
Q Consensus       242 ~g~~-~~~~~~~~l~~~G~~  260 (356)
                      +..+ ....++.++..+=.+
T Consensus        71 VPp~~a~dA~~EAi~agI~~   90 (119)
T d2nu7a1          71 VPAPFCKDSILEAIDAGIKL   90 (119)
T ss_dssp             CCGGGHHHHHHHHHHTTCSE
T ss_pred             ccHHHHHHHHHHHHHCCCCE
Confidence            5544 445555666555333

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.12  Score=36.35  Aligned_cols=34  Identities=26%  Similarity=0.143  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      .++|+|.|+ |.+|+-+++.++.+|.+|.++.+++
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence            478999998 9999999999999999999998654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=91.68  E-value=0.2  Score=40.25  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      -.|.+|+|.|. |.+|..+++++...|++|++++.+
T Consensus        29 l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeecc
Confidence            46899999996 999999999999999999988754

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.64  E-value=1.4  Score=33.65  Aligned_cols=107  Identities=17%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHh---CCCceeecCChhhHHHHHHHHCCCC
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEF---GYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~---g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      ..++++|+++ |-.+ -|.|-.+-.+++.. +.+|++++++++..+.+++.+   +....+...+..++...+.++.-+.
T Consensus        18 ~l~~~~~~~~-lD~t-~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~   95 (192)
T d1m6ya2          18 FLKPEDEKII-LDCT-VGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEK   95 (192)
T ss_dssp             HHCCCTTCEE-EETT-CTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSC
T ss_pred             hhCCCCCCEE-EEec-CCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCC
Confidence            3457788755 5444 44555555666655 569999999999998887543   3221222222245555555554457


Q ss_pred             ceEEEECCch----------------hhHHHHHHhcccCCEEEEEeccc
Q 042784          235 IDVYLDNVGG----------------KMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       235 ~d~vld~~g~----------------~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +|.|+--.|-                ..+..+.+.|+++|+++.+...+
T Consensus        96 vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          96 VDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             EEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             cceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            8887532221                15566777888999888765544

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.62  E-value=0.15  Score=35.96  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=36.1

Q ss_pred             hhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          150 FAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       150 ~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      .+...++. ..  +..++++|.|+ |.+|+-.++.++.+|.+|..+.++
T Consensus        10 ~~s~~~l~-l~--~~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~   54 (119)
T d3lada2          10 VDSTGALD-FQ--NVPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAM   54 (119)
T ss_dssp             EEHHHHTS-CS--SCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EchhHhhC-cc--cCCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEee
Confidence            45666663 33  34589999998 999999999999999999998855

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.61  E-value=1.3  Score=30.83  Aligned_cols=88  Identities=17%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +....+|+|.|.+|.-|..-.+..+..|.+|++-+...+.-+...   | -.++     ....+.+++ +  ++|.-+-+
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~~~---g-iPVf-----~tV~eAv~~-~--~~d~SvIf   71 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVL---G-VPVY-----DTVKEAVAH-H--EVDASIIF   71 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEET---T-EEEE-----SSHHHHHHH-S--CCSEEEEC
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcEEE---C-CchH-----hhHHHHHHh-c--CCeEEEEe
Confidence            456789999999999999999999999999888774322221111   1 1233     234455544 2  36666666


Q ss_pred             Cchh-hHHHHHHhcccCCEEE
Q 042784          242 VGGK-MLEAVLNHVNVHARII  261 (356)
Q Consensus       242 ~g~~-~~~~~~~~l~~~G~~v  261 (356)
                      +... ....++.++..+=.++
T Consensus        72 VPp~~a~dAi~EAi~agI~li   92 (121)
T d1oi7a1          72 VPAPAAADAALEAAHAGIPLI   92 (121)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEE
T ss_pred             eCHHHHHHHHHHHHhCCCcEE
Confidence            7654 4555666666664444

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=2  Score=36.24  Aligned_cols=106  Identities=17%  Similarity=0.216  Sum_probs=67.9

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC---ChHHHHHHHHHhCCCceeec--------C--------
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG---SDDNVKLLKEEFGYDDAFNY--------N--------  218 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~---s~~~~~~~~~~~g~~~v~~~--------~--------  218 (356)
                      +.+.+++++.|+... +|..|.++...|+.+|.+.+++..   ++++.+.++ .+|+.-+...        .        
T Consensus        90 ~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~-~~GA~vv~v~~~~~~~~~~~~~~~~~~  167 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPT-SGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLR-ALGAEIVRTPTNARFDSPESHVGVAWR  167 (355)
T ss_dssp             HHTCSCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHH-HTTCEEEECCC-------CCHHHHHHH
T ss_pred             HcCCcccCceEEEec-ccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHH-hcCCeEEEecccccchhhhhhhhHHHH
Confidence            346667777665555 699999999999999996655543   457888888 8998633210        0        


Q ss_pred             ---------------Ch-------hhHHHHHHHHCCCCceEEEECCchh----hHHHHHHhcccCCEEEEEec
Q 042784          219 ---------------SE-------MSFDAALTKYFPNGIDVYLDNVGGK----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       219 ---------------~~-------~~~~~~i~~~~~~~~d~vld~~g~~----~~~~~~~~l~~~G~~v~~g~  265 (356)
                                     +.       .....+|.+..++.+|+|+.++|+.    .+-..++...+.-+++.+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep  240 (355)
T d1jbqa_         168 LKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP  240 (355)
T ss_dssp             HHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             HHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecc
Confidence                           00       0112233333344689999999863    33445555667777776654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.49  E-value=0.15  Score=36.26  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      .++++|.|| |.+|+-+++++..+|.+|.++.++
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~   55 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQ   55 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEec
Confidence            479999998 999999999999999999999854

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.13  Score=42.84  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=28.0

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG  197 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~  197 (356)
                      ++|||+||+|-+|..++..+...|..+++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~   34 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRT   34 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecC
Confidence            48999999999999999999888998777653

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=91.40  E-value=1.9  Score=32.04  Aligned_cols=98  Identities=17%  Similarity=0.120  Sum_probs=55.0

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCceE
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      .+..|.+||=.++  |.|..++..+ ..|++|++++.+++..+.+++   .+|...-+...+ .+.........+..||+
T Consensus        38 ~~~~g~~vLDl~~--G~G~~~i~a~-~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~-~d~~~~~~~~~~~~fD~  113 (171)
T d1ws6a1          38 RYPRRGRFLDPFA--GSGAVGLEAA-SEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALP-VEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             HCTTCCEEEEETC--SSCHHHHHHH-HTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSC-HHHHHHHHHHTTCCEEE
T ss_pred             cccCCCeEEEecc--ccchhhhhhh-hccchhhhcccCHHHHhhhhHHHHhhccccceeeee-hhcccccccccCCccce
Confidence            4677888875553  3333444433 469999999999988877653   455543232222 22221222233457999


Q ss_pred             EEE-C---Cch-hhHHHHH--HhcccCCEEEE
Q 042784          238 YLD-N---VGG-KMLEAVL--NHVNVHARIIL  262 (356)
Q Consensus       238 vld-~---~g~-~~~~~~~--~~l~~~G~~v~  262 (356)
                      |+- .   .+. ..+..++  ..++++|.++.
T Consensus       114 If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivi  145 (171)
T d1ws6a1         114 AFMAPPYAMDLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             EEECCCTTSCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             eEEccccccCHHHHHHHHHHcCCcCCCeEEEE
Confidence            974 1   222 2333333  35888887764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.16  E-value=0.23  Score=41.19  Aligned_cols=98  Identities=13%  Similarity=0.109  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC------CceeecCChhhHHHHHHHHCCCCc
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGY------DDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~------~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ...++|||.|+  |-|..+-.+++..+. +|.+++..++=.+.+++-+..      +.-+.... .|..+.+++ +.+.+
T Consensus        88 ~~pk~VLiiGg--G~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~-~Da~~~l~~-~~~~y  163 (295)
T d1inla_          88 PNPKKVLIIGG--GDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-ANGAEYVRK-FKNEF  163 (295)
T ss_dssp             SSCCEEEEEEC--TTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-SCHHHHGGG-CSSCE
T ss_pred             CCCceEEEecC--CchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh-hhHHHHHhc-CCCCC
Confidence            34589999995  445667778887765 899999998888877732211      10011100 344444544 34579


Q ss_pred             eEEE-ECCc-----------hhhHHHHHHhcccCCEEEEEe
Q 042784          236 DVYL-DNVG-----------GKMLEAVLNHVNVHARIILCG  264 (356)
Q Consensus       236 d~vl-d~~g-----------~~~~~~~~~~l~~~G~~v~~g  264 (356)
                      |+|| |+..           .+.+..+.+.|+++|.++.-.
T Consensus       164 DvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         164 DVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            9997 3321           126788999999999988643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.06  E-value=0.21  Score=36.01  Aligned_cols=38  Identities=16%  Similarity=0.090  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      .++.+++|+|.|+ |.+|+-++..++..|.+|.++.+++
T Consensus        31 ~~~~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          31 QLIADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hhccCCEEEEECC-chHHHHHHHHHHhhCcceeeeeecc
Confidence            3567899999997 9999999999999999999998654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.01  E-value=0.34  Score=35.81  Aligned_cols=89  Identities=18%  Similarity=0.097  Sum_probs=53.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHhCCCc--eeecCChhhHHHHHHHHCCCCceEEE
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC---KVVGSTGSDDNVKLLKEEFGYDD--AFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~---~V~~~~~s~~~~~~~~~~~g~~~--v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      |-+|.|.||+|-+|.-.++++....+   ++...+ +.+...... .+....  ..+..+          ......|+++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~-s~~s~G~~~-~~~~~~~~~~~~~~----------~~~~~~d~~f   68 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA-SARSAGKSL-KFKDQDITIEETTE----------TAFEGVDIAL   68 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE-CGGGTTCEE-EETTEEEEEEECCT----------TTTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec-ccccccccc-cccCCcccccccch----------hhhhhhhhhh
Confidence            45899999999999999999987743   555555 322111000 000000  011110          1113589999


Q ss_pred             ECCchh-hHHHHHHhcccCCEEEEEec
Q 042784          240 DNVGGK-MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       240 d~~g~~-~~~~~~~~l~~~G~~v~~g~  265 (356)
                      -+.+.. ....+.+....+-+++..+.
T Consensus        69 ~~~~~~~s~~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          69 FSAGSSTSAKYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             hccCccchhhHHhhhccccceehhcCh
Confidence            999876 55556667777788887654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.94  E-value=0.14  Score=40.80  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD  200 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~  200 (356)
                      .+.+++|+|.|| |..|+.++..++..|.+|.+++.+++
T Consensus        46 ~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeeccc
Confidence            356789999998 99999999999999999999986553

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.80  E-value=0.11  Score=38.42  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG  197 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~  197 (356)
                      .|.+|||.|| |.+|+.-+..+...|++|++++.
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence            4899999998 99999999999999999888853

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.77  E-value=0.64  Score=39.68  Aligned_cols=32  Identities=25%  Similarity=0.178  Sum_probs=26.5

Q ss_pred             CCEEEEEcCCChHHHHHH-HHHHHCCCEEEEEe
Q 042784          165 GSNVFVSAAAGGVGMFAG-QLAKLKGCKVVGST  196 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i-~la~~~G~~V~~~~  196 (356)
                      +-+|||+||+|-+|...+ +|++..|.+|++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            347999999999997766 46677899999986

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.53  Score=38.37  Aligned_cols=103  Identities=13%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHH----C-C--CEEEEEeCChHHHHHHHHHhCCC-----ceeecCC--hhhHHHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKL----K-G--CKVVGSTGSDDNVKLLKEEFGYD-----DAFNYNS--EMSFDAA  226 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~----~-G--~~V~~~~~s~~~~~~~~~~~g~~-----~v~~~~~--~~~~~~~  226 (356)
                      +.++.-+||=.|+  |.|..+..+++.    . +  .++++++.++...+.+++.+...     ..++...  ...+...
T Consensus        37 ~~~~~~~VLDiGc--G~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (280)
T d1jqea_          37 DTKSEIKILSIGG--GAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSR  114 (280)
T ss_dssp             TTCSEEEEEEETC--TTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHH
T ss_pred             cCCCCCeEEEEcC--CCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcch
Confidence            3455557888885  345454444443    2 3  36889999999888887543321     1222222  0122222


Q ss_pred             HHH-HCCCCceEEEECCc-----h--hhHHHHHHhcccCCEEEEEec
Q 042784          227 LTK-YFPNGIDVYLDNVG-----G--KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       227 i~~-~~~~~~d~vld~~g-----~--~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ... ...+.||+|+..-.     .  ..+..+.++|+|+|.++....
T Consensus       115 ~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         115 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             HTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence            222 22457999987433     1  378889999999998876643

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.66  E-value=0.17  Score=43.26  Aligned_cols=73  Identities=11%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCE-EEEEeCCh--HHHHHHHHHhCC-Cc----eeecCChhhHHHHHHHHCCCCceEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCK-VVGSTGSD--DNVKLLKEEFGY-DD----AFNYNSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~-V~~~~~s~--~~~~~~~~~~g~-~~----v~~~~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      +|||+||+|-+|..++..+...|.+ |++++...  .+.+.+. .+.. ..    ..|..+...+.+.++.   ..+|+|
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~~~~---~~~d~V   77 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLS-DISESNRYNFEHADICDSAEITRIFEQ---YQPDAV   77 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGT-TTTTCTTEEEEECCTTCHHHHHHHHHH---HCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHH-hhhhcCCcEEEEccCCCHHHHHHHHHh---CCCCEE
Confidence            6999999999999999888888885 55555321  1122222 2211 11    1244443444444443   258999


Q ss_pred             EECCc
Q 042784          239 LDNVG  243 (356)
Q Consensus       239 ld~~g  243 (356)
                      +++++
T Consensus        78 ihlAa   82 (361)
T d1kewa_          78 MHLAA   82 (361)
T ss_dssp             EECCS
T ss_pred             EECcc
Confidence            99875

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=2.3  Score=31.19  Aligned_cols=136  Identities=11%  Similarity=0.110  Sum_probs=76.3

Q ss_pred             EEEEEcCCChHHHH-HHHHHHHC-CCEEEEEe-CChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCc
Q 042784          167 NVFVSAAAGGVGMF-AGQLAKLK-GCKVVGST-GSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVG  243 (356)
Q Consensus       167 ~VlV~g~~g~vG~~-~i~la~~~-G~~V~~~~-~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g  243 (356)
                      +|.|.|. |.+|.- .+..++.. ++++++++ +++++.+.+.+.++.. .++     ++.+.+     ..+|+|+-|+.
T Consensus         3 ri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~-~~~-----~~~~l~-----~~~D~V~I~tp   70 (164)
T d1tlta1           3 RIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP-YAD-----SLSSLA-----ASCDAVFVHSS   70 (164)
T ss_dssp             EEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCC-BCS-----SHHHHH-----TTCSEEEECSC
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccccc-ccc-----cchhhh-----hhccccccccc
Confidence            5889996 999964 56655554 67877665 4556666555588765 222     222222     24899999987


Q ss_pred             hh-hHHHHHHhcccCCEEEEEecccccccccccccchhhhhhhh-ccceEE-EEEecccccchHHHHHHHHHHHHHcCCe
Q 042784          244 GK-MLEAVLNHVNVHARIILCGMISQYNKVWTERDGVRNLLNMI-GKEVKM-EGFMIGSHMDRFADFTVEMESYIKEGKI  320 (356)
Q Consensus       244 ~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~g~i  320 (356)
                      .. +...+..+++.+-+ +++.-+...+     ......+.... .++..+ .++.    +..++...+.+.+++++|.+
T Consensus        71 ~~~h~~~~~~al~~gk~-V~~EKPla~~-----~~e~~~l~~~a~~~~~~~~v~~~----~r~~~~~~~~~~~~i~~g~i  140 (164)
T d1tlta1          71 TASHFDVVSTLLNAGVH-VCVDKPLAEN-----LRDAERLVELAARKKLTLMVGFN----RRFFVGCARHFIECVQNQTV  140 (164)
T ss_dssp             TTHHHHHHHHHHHTTCE-EEEESSSCSS-----HHHHHHHHHHHHHTTCCEEEECG----GGGHHHHHHHHHHHHHHTCC
T ss_pred             chhccccccccccccce-eeccccccCC-----HHHHHHHHHHHHHcCCcEEEEec----cccCHHHHHHHHHHHHCCCC
Confidence            75 67777778877655 5565544311     11111122222 223322 2221    11234455667888888877


Q ss_pred             eeee
Q 042784          321 RSKH  324 (356)
Q Consensus       321 ~~~~  324 (356)
                      -..+
T Consensus       141 g~~~  144 (164)
T d1tlta1         141 PQTA  144 (164)
T ss_dssp             CTTS
T ss_pred             CCEE
Confidence            5443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=90.62  E-value=0.19  Score=40.60  Aligned_cols=97  Identities=10%  Similarity=0.041  Sum_probs=60.5

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHH-CCCCceE
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKY-FPNGIDV  237 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~-~~~~~d~  237 (356)
                      ++++++||=.|. | .|..+..+++.-..+|++++.|++..+.+++.   .+...-+.... .+...  ..+ .++.||+
T Consensus        22 ~~~~~~VLDlGC-G-~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~-~D~~~--~~~~~~~~fD~   96 (252)
T d1ri5a_          22 TKRGDSVLDLGC-G-KGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA-QDSYG--RHMDLGKEFDV   96 (252)
T ss_dssp             CCTTCEEEEETC-T-TTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEE-SCTTT--SCCCCSSCEEE
T ss_pred             CCCcCEEEEecc-c-CcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEE-cchhh--hcccccccceE
Confidence            578999999985 3 35566777776445999999999998888743   23221121110 11100  011 1346999


Q ss_pred             EEECCch-----------hhHHHHHHhcccCCEEEEE
Q 042784          238 YLDNVGG-----------KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       238 vld~~g~-----------~~~~~~~~~l~~~G~~v~~  263 (356)
                      |+....-           ..+..+.+.|+|+|.++..
T Consensus        97 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          97 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            9874331           1456677899999998753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.2  Score=35.68  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      .++++|.|+ |.+|+-++..++.+|.+|+.+.+++
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence            479999998 9999999999999999999998653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.57  E-value=0.18  Score=35.72  Aligned_cols=34  Identities=18%  Similarity=0.057  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      ..++++|.|| |.+|+-.++.++.+|.+|..+.++
T Consensus        19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            3478999998 999999999999999999988743

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.53  E-value=0.3  Score=41.09  Aligned_cols=33  Identities=21%  Similarity=0.101  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG  197 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~  197 (356)
                      .+++||+||+|-+|...+..+...|.+|+++++
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            478999999999999999999999999999974

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.49  E-value=0.26  Score=39.85  Aligned_cols=34  Identities=26%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG  197 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~  197 (356)
                      -.|.+|+|.|- |.+|..+++.+...|++|+++..
T Consensus        34 l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          34 LVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             STTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEec
Confidence            46899999995 99999999999999999998764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.43  E-value=0.17  Score=35.43  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      +++++|.|| |.+|+-+++.++.+|.+|..+.+.+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence            489999998 9999999999999999999987553

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.43  E-value=0.15  Score=36.24  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      +..++++|.|+ |-+|+-.++.+..+|.+|.++.+++
T Consensus        23 ~~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcc
Confidence            34589999998 9999999999999999999998654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.40  E-value=1.2  Score=33.54  Aligned_cols=83  Identities=16%  Similarity=0.026  Sum_probs=50.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHHhCCCcee-------ecCChhhHHHHHHHHCCCCceE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD--NVKLLKEEFGYDDAF-------NYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~--~~~~~~~~~g~~~v~-------~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      +|.|.|+ |..|.+.+..+...|.+|....+..+  ..+.+. .-.....+       +.....++.+.+.     .+|+
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~ad~   74 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-AGREHPRLGVKLNGVEIFWPEQLEKCLE-----NAEV   74 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-TTCCBTTTTBCCCSEEEECGGGHHHHHT-----TCSE
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHh-hhhhhhhhcchhccccccccccHHHHHh-----ccch
Confidence            5889997 99999988888788889988875433  233333 11110000       0001144555443     4899


Q ss_pred             EEECCchhhHHHHHHhccc
Q 042784          238 YLDNVGGKMLEAVLNHVNV  256 (356)
Q Consensus       238 vld~~g~~~~~~~~~~l~~  256 (356)
                      |+-++....+...++.+++
T Consensus        75 Ii~avps~~~~~~~~~l~~   93 (180)
T d1txga2          75 VLLGVSTDGVLPVMSRILP   93 (180)
T ss_dssp             EEECSCGGGHHHHHHHHTT
T ss_pred             hhcccchhhhHHHHHhhcc
Confidence            9999998766666654433

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=89.98  E-value=0.48  Score=40.00  Aligned_cols=95  Identities=13%  Similarity=0.099  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHH-HHHCCC-EEEEEeCChHHHHHHHHHhCCC---ceeecCChhhHHHHHHHHCCCCceE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQL-AKLKGC-KVVGSTGSDDNVKLLKEEFGYD---DAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~l-a~~~G~-~V~~~~~s~~~~~~~~~~~g~~---~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      +...++.|.|+ |..+.+.++. +..++. +|.+.++++++.+.+.+.+...   .+...   .+..+.+     .++|+
T Consensus       126 ~da~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~---~s~~eav-----~~ADI  196 (340)
T d1x7da_         126 PNARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRA---SSVAEAV-----KGVDI  196 (340)
T ss_dssp             TTCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEEC---SSHHHHH-----TTCSE
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceec---CCHHHHH-----hcCCc
Confidence            44688999996 9988876664 466787 9999999988766555455432   12222   4555555     34899


Q ss_pred             EEECCchh----hHHHHHHhcccCCEEEEEecccc
Q 042784          238 YLDNVGGK----MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       238 vld~~g~~----~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      |+-|+.+.    .+.  ...++|+-++..+|....
T Consensus       197 i~t~Tas~s~~Pv~~--~~~l~pG~hI~aiGs~~p  229 (340)
T d1x7da_         197 ITTVTADKAYATIIT--PDMLEPGMHLNAVGGDCP  229 (340)
T ss_dssp             EEECCCCSSEEEEEC--GGGCCTTCEEEECSCCBT
T ss_pred             eeeccccCCCCcccc--hhhcCCCCEEeecccchh
Confidence            99887542    222  247899999999987654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.94  E-value=0.2  Score=35.74  Aligned_cols=35  Identities=11%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      +..++++|.|+ |-+|+-+++..+.+|.+|..+.++
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~   58 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMM   58 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEee
Confidence            44689999998 999999999999999999999854

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.28  Score=39.86  Aligned_cols=105  Identities=14%  Similarity=0.102  Sum_probs=62.7

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC-ceeecCC--------------hhhHHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD-DAFNYNS--------------EMSFDA  225 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~-~v~~~~~--------------~~~~~~  225 (356)
                      ....|.++|=.|. |+ |...+..+...+.+|++++.++...+.+++.+... ..++...              ......
T Consensus        51 g~~~g~~vLDiGc-G~-g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  128 (263)
T d2g72a1          51 GEVSGRTLIDIGS-GP-TVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER  128 (263)
T ss_dssp             SCSCCSEEEEETC-TT-CCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred             CCCCCcEEEEecc-CC-CHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence            3456899999996 44 44444444444569999999999999998544432 1222100              000001


Q ss_pred             HHHH---------H-----------CCCCceEEEECCch-----------hhHHHHHHhcccCCEEEEEeccc
Q 042784          226 ALTK---------Y-----------FPNGIDVYLDNVGG-----------KMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       226 ~i~~---------~-----------~~~~~d~vld~~g~-----------~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      ..+.         +           ..+.+|+|+.+.--           ..+..+.++|+|||.++..+...
T Consensus       129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~  201 (263)
T d2g72a1         129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE  201 (263)
T ss_dssp             HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence            1110         0           01358999874321           15667888999999999877643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.84  E-value=1.5  Score=32.70  Aligned_cols=94  Identities=14%  Similarity=0.023  Sum_probs=59.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce----eecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA----FNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v----~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +|-|.|. |.+|...+.-+...|.+|++.++++++.+.+.++ +....    ....  .+....+...  ...+.++.++
T Consensus         3 kIGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~-~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~   76 (178)
T d1pgja2           3 DVGVVGL-GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA-NASAPFAGNLKAF--ETMEAFAASL--KKPRKALILV   76 (178)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-TTTSTTGGGEEEC--SCHHHHHHHB--CSSCEEEECC
T ss_pred             EEEEEee-hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-CCccccccchhhh--hhhhHHHHhc--ccceEEEEee
Confidence            4778896 9999998888888899999999999999888734 44211    1111  1222223222  2245555554


Q ss_pred             ch-----hhHHHHHHhcccCCEEEEEecc
Q 042784          243 GG-----KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       243 g~-----~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ..     ..+......+.++..++..+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~iii~~st~  105 (178)
T d1pgja2          77 QAGAATDSTIEQLKKVFEKGDILVDTGNA  105 (178)
T ss_dssp             CCSHHHHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             cCcchhhhhhhhhhhhccccceecccCcc
Confidence            43     2445666677777777766543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=89.74  E-value=0.83  Score=36.58  Aligned_cols=100  Identities=16%  Similarity=0.171  Sum_probs=63.1

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      ....+....+||=.|  +|.|..++.+++.. +.++++++. ++..+.+++   +.|....+.... .++    .+..+.
T Consensus        74 ~~~d~~~~~~VLDvG--cG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~-~D~----~~~~~~  145 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVG--GGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVE-GDF----FEPLPR  145 (253)
T ss_dssp             HHSCCTTCSEEEEET--CTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEE-CCT----TSCCSS
T ss_pred             hhcCCccCCEEEEeC--CCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhcc-ccc----hhhccc
Confidence            345677788999888  67788999999887 569998885 444444432   334322222211 121    111234


Q ss_pred             CceEEEECC-----chh----hHHHHHHhcccCCEEEEEec
Q 042784          234 GIDVYLDNV-----GGK----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       234 ~~d~vld~~-----g~~----~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ++|+|+-..     ..+    .+..+.+.|+|+|+++....
T Consensus       146 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         146 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             chhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            699998532     222    57889999999999987654

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.19  Score=42.51  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=29.6

Q ss_pred             EE-EEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          167 NV-FVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       167 ~V-lV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      +| ||+||+|-+|..++..+...|.+|+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            57 9999999999999998888999999999753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.53  E-value=0.19  Score=41.80  Aligned_cols=38  Identities=21%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      .....++|+|+|| |..|+.++..++..|.+|.+++.++
T Consensus        26 ~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3455679999997 9999999988888899999998543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=89.49  E-value=1.1  Score=32.93  Aligned_cols=39  Identities=21%  Similarity=0.146  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNV  202 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~  202 (356)
                      ++..+|.|.|+ |.+|..++.++...+. +++..+..+++.
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~   44 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMP   44 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence            45678999997 9999888888887786 899888776543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.37  E-value=0.1  Score=38.40  Aligned_cols=89  Identities=11%  Similarity=0.066  Sum_probs=50.3

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKG---CKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G---~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      -+|.|.||+|-+|+-.++++...+   .++..+..+....+.+.  +.... +..   .+    +....-.++|++|-|.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~--~~~~~-~~~---~~----~~~~~~~~~d~vf~a~   72 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG--FAESS-LRV---GD----VDSFDFSSVGLAFFAA   72 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE--ETTEE-EEC---EE----GGGCCGGGCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee--ecccc-chh---cc----chhhhhccceEEEecC
Confidence            368999999999999999997543   47776663322111111  11100 000   00    1111113689999999


Q ss_pred             chhh-HHHHHHhcccCCEEEEEe
Q 042784          243 GGKM-LEAVLNHVNVHARIILCG  264 (356)
Q Consensus       243 g~~~-~~~~~~~l~~~G~~v~~g  264 (356)
                      +... ....-.....+.+++..+
T Consensus        73 p~~~s~~~~~~~~~~g~~VID~S   95 (144)
T d2hjsa1          73 AAEVSRAHAERARAAGCSVIDLS   95 (144)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETT
T ss_pred             CcchhhhhccccccCCceEEeec
Confidence            9874 444445556666666543

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.22  E-value=4.7  Score=33.21  Aligned_cols=105  Identities=19%  Similarity=0.236  Sum_probs=67.6

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe---CChHHHHHHHHHhCCCceeec------------------
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST---GSDDNVKLLKEEFGYDDAFNY------------------  217 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~---~s~~~~~~~~~~~g~~~v~~~------------------  217 (356)
                      .+.++.+.+.+|...+|..|.++...++.+|.+.+++.   .++.+.+.++ .+|+..+...                  
T Consensus        58 ~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~-~~Ga~vi~~~~~~~~~~~~~~~~~~~~~  136 (320)
T d1z7wa1          58 KGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILL-AFGVELVLTDPAKGMKGAIAKAEEILAK  136 (320)
T ss_dssp             TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHH-HTTCEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhh-ccCcceEEeeccccccccchhHHHHHHh
Confidence            46666776767777789999999999999999555444   2456777777 8888633211                  


Q ss_pred             ----------CCh-------hhHHHHHHHHCCCCceEEEECCchh-h---HHHHHHhcccCCEEEEEe
Q 042784          218 ----------NSE-------MSFDAALTKYFPNGIDVYLDNVGGK-M---LEAVLNHVNVHARIILCG  264 (356)
Q Consensus       218 ----------~~~-------~~~~~~i~~~~~~~~d~vld~~g~~-~---~~~~~~~l~~~G~~v~~g  264 (356)
                                .+.       .....+|.+...+.+|+++-++|+. .   +-..++...+.-+++.+.
T Consensus       137 ~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve  204 (320)
T d1z7wa1         137 TPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVE  204 (320)
T ss_dssp             CTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeeccc
Confidence                      110       1122344444445689999998874 2   334455566677776554

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.22  E-value=2.7  Score=32.26  Aligned_cols=107  Identities=13%  Similarity=0.114  Sum_probs=66.4

Q ss_pred             hhhHHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHH
Q 042784          149 GFAAWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFD  224 (356)
Q Consensus       149 ~~ta~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~  224 (356)
                      +-.-|..++  ++  .+..||=.|  -|.|..++.+|+.. +.++++++.++.....+.+   +.|...+.-..  .+..
T Consensus        18 ~~~~w~~~F--~~--~~PlvLeIG--cG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~--~Da~   89 (204)
T d2fcaa1          18 YKGKWNTVF--GN--DNPIHIEVG--TGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLN--IDAD   89 (204)
T ss_dssp             GTTCHHHHH--TS--CCCEEEEEC--CTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEEC--CCGG
T ss_pred             HHhHHHHHc--CC--CCceEEEEE--ecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcc--cchh
Confidence            334466665  33  233556666  56788899999886 5699999999887766532   45654332222  1222


Q ss_pred             HHHHHHCCCCceEEEECCch---------------hhHHHHHHhcccCCEEEEE
Q 042784          225 AALTKYFPNGIDVYLDNVGG---------------KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       225 ~~i~~~~~~~~d~vld~~g~---------------~~~~~~~~~l~~~G~~v~~  263 (356)
                      .....+..+.+|.|+-....               ..+..+.+.|+|+|.+...
T Consensus        90 ~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1          90 TLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             GHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             hhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            22222334568887754332               3677888999999998765

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.01  E-value=0.27  Score=40.53  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      .|.+|+|.|- |.||..+++.+...|++|+++..+
T Consensus        35 ~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          35 GDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcc
Confidence            5789999996 999999999999999999988743

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=88.87  E-value=0.82  Score=37.16  Aligned_cols=72  Identities=13%  Similarity=0.119  Sum_probs=43.6

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCC-EEEEEeC--ChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC-CCCceEEEECCc
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGC-KVVGSTG--SDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF-PNGIDVYLDNVG  243 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~--s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~-~~~~d~vld~~g  243 (356)
                      |||+||+|-+|...+..+...|. +|++++.  ...+..... ++......+.   .++...+.... -..++.++.+.+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV-DLNIADYMDK---EDFLIQIMAGEEFGDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHH-TSCCSEEEEH---HHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhccc-ccchhhhccc---hHHHHHHhhhhcccchhhhhhhcc
Confidence            79999999999999888888897 7888752  222233333 3333323332   34444443332 246788887654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.86  E-value=0.45  Score=34.81  Aligned_cols=37  Identities=19%  Similarity=0.148  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHH
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNV  202 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~  202 (356)
                      ..+|.|.|+ |.+|..++..+...|.  +++.++..+++.
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            458999996 9999998888887774  899999777654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.72  E-value=2.7  Score=30.23  Aligned_cols=36  Identities=25%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHH
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNV  202 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~  202 (356)
                      .+|.|.|+ |.+|..++..+...|.  +++.++..+++.
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~   39 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERV   39 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence            57899997 9999999988888886  899998777654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.69  E-value=0.47  Score=34.87  Aligned_cols=48  Identities=15%  Similarity=0.099  Sum_probs=39.7

Q ss_pred             hhhHHHHHHHhCCCCCCCEEEEE--cCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          149 GFAAWVGIEVLGQPKSGSNVFVS--AAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       149 ~~ta~~~l~~~~~~~~g~~VlV~--g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      .+|...++.  .+..++..++|.  |+ |-+|+.+++.+...|.+|..+.+.+
T Consensus        25 v~t~~d~l~--~~~~~~~~vvi~d~gg-g~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          25 QLTPEQVMD--GKKKIGKRVVILNADT-YFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             EECHHHHHH--TCSCCCSEEEEEECCC-SSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EECHHHHhc--CccccCCceEEEecCC-ChHHHHHHHHHHHcCCeEEEEecCC
Confidence            447777774  667888999887  54 8899999999999999999998664

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=88.54  E-value=0.26  Score=36.20  Aligned_cols=83  Identities=19%  Similarity=0.137  Sum_probs=50.9

Q ss_pred             EEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchhhHH
Q 042784          169 FVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGKMLE  248 (356)
Q Consensus       169 lV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~  248 (356)
                      -+.|+ |.+|.+.++.++..+..+.+..++.++.+.+.+..+.. ..+..+   .   +     ...|+||-|+....+.
T Consensus         3 gfIG~-G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~-~~~~~~---~---~-----~~~DiVil~v~d~~i~   69 (153)
T d2i76a2           3 NFVGT-GTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGK-AATLEK---H---P-----ELNGVVFVIVPDRYIK   69 (153)
T ss_dssp             EEESC-CHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCC-CCSSCC---C---C-----C---CEEECSCTTTHH
T ss_pred             EEEeC-cHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccccc-ccchhh---h---h-----ccCcEEEEeccchhhh
Confidence            36785 99999887766543333356788999999888554433 322211   0   1     3479999999988888


Q ss_pred             HHHHhcccCCE-EEEEe
Q 042784          249 AVLNHVNVHAR-IILCG  264 (356)
Q Consensus       249 ~~~~~l~~~G~-~v~~g  264 (356)
                      .....++..++ ++.+.
T Consensus        70 ~v~~~l~~~~~ivi~~s   86 (153)
T d2i76a2          70 TVANHLNLGDAVLVHCS   86 (153)
T ss_dssp             HHHTTTCCSSCCEEECC
T ss_pred             HHHhhhcccceeeeecc
Confidence            88888865444 44443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=88.45  E-value=0.38  Score=38.27  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      +.-.+|+|.|| |..|++++..+...|.+|.++++.
T Consensus         4 ~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGS-GVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence            34568999998 999999999999999999999853

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=88.32  E-value=0.19  Score=38.47  Aligned_cols=92  Identities=9%  Similarity=-0.005  Sum_probs=53.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCc-eeecCChhhHHHHHHHHCCCCceEEEECCch
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDD-AFNYNSEMSFDAALTKYFPNGIDVYLDNVGG  244 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~-v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~  244 (356)
                      +|.|.||+|-+|+-.++++... .+++..+..+......+. +..... ..+......    ..+..-.++|++|-|.+.
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~Dvvf~alp~   81 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFG-SVFPHLITQDLPNLVA----VKDADFSNVDAVFCCLPH   81 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHH-HHCGGGTTSCCCCCBC----GGGCCGGGCSEEEECCSS
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccc-cccccccccccccchh----hhhhhhcccceeeecccc
Confidence            6899999999999999999876 447776653322222222 111100 000000000    001111358999999998


Q ss_pred             hhHHHHHHhcccCCEEEEE
Q 042784          245 KMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       245 ~~~~~~~~~l~~~G~~v~~  263 (356)
                      .........+...+.++..
T Consensus        82 ~~s~~~~~~l~~~~~~v~~  100 (183)
T d2cvoa1          82 GTTQEIIKGLPQELKIVDL  100 (183)
T ss_dssp             SHHHHHHHTSCSSCEEEEC
T ss_pred             chHHHHHHHHHhcCccccc
Confidence            7655666777777877654

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.054  Score=40.88  Aligned_cols=92  Identities=20%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHh----CC--CceeecCChhhHHHHHHHHCCCCceEEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEF----GY--DDAFNYNSEMSFDAALTKYFPNGIDVYL  239 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~----g~--~~v~~~~~~~~~~~~i~~~~~~~~d~vl  239 (356)
                      +|.|+|++|-+|.+.++++... ++++++...++.....-+ .+    |.  ..+....   ++..    . -..+|+++
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~-d~~~~~~~~~~~~~~~~---~~~~----~-~~~~DViI   76 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS-DAGELAGAGKTGVTVQS---SLDA----V-KDDFDVFI   76 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC-CTTCSSSSSCCSCCEES---CSTT----T-TTSCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc-hhhhhhccccCCceeec---cHHH----H-hcccceEE
Confidence            6899999999999999988766 667766553332211110 11    11  0001111   1111    1 13589999


Q ss_pred             ECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          240 DNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       240 d~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      |++-.+.....++.....|.=+.+|...
T Consensus        77 DFs~p~~~~~~~~~a~~~~~~~ViGTTG  104 (162)
T d1diha1          77 DFTRPEGTLNHLAFCRQHGKGMVIGTTG  104 (162)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred             EeccHHHHHHHHHHHHhccceeEEecCC
Confidence            9998887667777666666666677654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.24  E-value=0.18  Score=41.42  Aligned_cols=32  Identities=28%  Similarity=0.315  Sum_probs=29.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      .|+|.|| |..|+++...++..|.+|.++++.+
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5999998 9999999999999999999998765

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.21  E-value=1.4  Score=31.94  Aligned_cols=66  Identities=14%  Similarity=0.051  Sum_probs=43.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +|.|.|. |.+|...+.-+...|.+|++..+..++....+ ..+.. +.+..  .   +.+.     ..|+||-|+..+
T Consensus         2 kIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~-~~~~~-~~~~~--~---e~~~-----~~diIi~~v~~~   67 (152)
T d1i36a2           2 RVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPSTIER-ARTVG-VTETS--E---EDVY-----SCPVVISAVTPG   67 (152)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHH-HHHHT-CEECC--H---HHHH-----TSSEEEECSCGG
T ss_pred             EEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHHHHHh-hhccc-ccccH--H---HHHh-----hcCeEEEEecCc
Confidence            5788996 99999999888888999988876655544443 22332 22221  2   2222     378888888765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.15  E-value=2  Score=34.06  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=28.6

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeC
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTG  197 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~  197 (356)
                      ..+|+|.|+ |++|..++..+...|. +++.+|.
T Consensus        30 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          30 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECC
Confidence            478999997 9999999999999999 8888874

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.12  E-value=0.34  Score=34.15  Aligned_cols=36  Identities=11%  Similarity=0.083  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      +.+.+++|.|| |.+|+-+++.+...|.+|..+.+++
T Consensus        30 ~~~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hcCCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence            44689999998 9999999999999999999988653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.06  E-value=0.25  Score=41.71  Aligned_cols=92  Identities=21%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHC--CCC
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      ...+|++||-.|+ | .|++++.+|+ .|+ +|++++.++ ..+.+++   +.+....+..-. .+    +.++.  ...
T Consensus        35 ~~~~~~~VLDlGc-G-tG~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~-~~----~~~l~~~~~~  105 (328)
T d1g6q1_          35 DLFKDKIVLDVGC-G-TGILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLR-GK----LEDVHLPFPK  105 (328)
T ss_dssp             HHHTTCEEEEETC-T-TSHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEE-SC----TTTSCCSSSC
T ss_pred             ccCCcCEEEEeCC-C-CCHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEE-ee----hhhccCcccc
Confidence            3457899999985 3 4666665555 677 999999775 3333321   444432111100 11    12222  347


Q ss_pred             ceEEEECC-c----h-h----hHHHHHHhcccCCEEE
Q 042784          235 IDVYLDNV-G----G-K----MLEAVLNHVNVHARII  261 (356)
Q Consensus       235 ~d~vld~~-g----~-~----~~~~~~~~l~~~G~~v  261 (356)
                      +|+|+... +    . .    .+...-+.|+|+|+++
T Consensus       106 ~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            99997632 2    1 1    3444457899999875

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.00  E-value=3.4  Score=29.51  Aligned_cols=36  Identities=17%  Similarity=0.160  Sum_probs=28.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVK  203 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~  203 (356)
                      +|.|.|+ |.+|..++..+...+.  ++...+..+++.+
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~   39 (140)
T d1a5za1           2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAE   39 (140)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeccccccc
Confidence            5789997 9999998877776664  8999887776543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.97  E-value=0.2  Score=37.88  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC------cee---ecCChhhHHHHHHHHCCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYD------DAF---NYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~------~v~---~~~~~~~~~~~i~~~~~~  233 (356)
                      -.|++|+|.|-+.-+|.-...++...|++|+... +....++.+   +++      ..-   .+.. +.+.+.+++    
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~lk~~~~~----   97 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVD-VNNIQKFTR---GESLKLNKHHVEDLGEYSE-DLLKKCSLD----   97 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEEC-SSEEEEEES---CCCSSCCCCEEEEEEECCH-HHHHHHHHH----
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEec-ccccccccc---ccceeeeeeccccccccch-hHHhhcccc----
Confidence            4689999999988999998899988999988654 221111110   111      111   1221 223333433    


Q ss_pred             CceEEEECCchhhHHHHHHhcccCCEEEEEeccc
Q 042784          234 GIDVYLDNVGGKMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       234 ~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                       +|+++-++|.+.+.---+.++++..++.+|...
T Consensus        98 -aDIvIsavG~p~~~i~~d~ik~GavvIDvGi~~  130 (171)
T d1edza1          98 -SDVVITGVPSENYKFPTEYIKEGAVCINFACTK  130 (171)
T ss_dssp             -CSEEEECCCCTTCCBCTTTSCTTEEEEECSSSC
T ss_pred             -CCEEEEccCCCccccChhhcccCceEeeccccc
Confidence             899999999875433345788888888888653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=87.95  E-value=0.31  Score=36.46  Aligned_cols=35  Identities=26%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCCh
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSD  199 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~  199 (356)
                      .|++|+|.|| |.+|+.+++.++..+.  +|+++++.+
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4789999998 9999999888888774  888887554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.92  E-value=0.84  Score=33.21  Aligned_cols=72  Identities=25%  Similarity=0.182  Sum_probs=41.2

Q ss_pred             EEEEEcCCChHHHHHHHHHH-HCC--CEEEEEeCChHHHHHHHHHhCCCcee---ecCChhhHHHHHHHHCCCCceEEEE
Q 042784          167 NVFVSAAAGGVGMFAGQLAK-LKG--CKVVGSTGSDDNVKLLKEEFGYDDAF---NYNSEMSFDAALTKYFPNGIDVYLD  240 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~-~~G--~~V~~~~~s~~~~~~~~~~~g~~~v~---~~~~~~~~~~~i~~~~~~~~d~vld  240 (356)
                      +|.|.|++|.+|..++.+++ ..+  .++...+..+.....+.+-..+....   ......++. .+     .+.|+|+-
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~-~~-----~~aDvvvi   75 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-AL-----EGADVVLI   75 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHH-HH-----TTCSEEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCcc-cc-----CCCCEEEE
Confidence            58899988999988777554 444  38888886544334333211221111   111112332 23     45899999


Q ss_pred             CCch
Q 042784          241 NVGG  244 (356)
Q Consensus       241 ~~g~  244 (356)
                      +.|.
T Consensus        76 taG~   79 (145)
T d2cmda1          76 SAGV   79 (145)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            9883

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.86  E-value=0.92  Score=32.07  Aligned_cols=87  Identities=15%  Similarity=0.160  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcCCCh--------HHHH---HHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHC
Q 042784          163 KSGSNVFVSAAAGG--------VGMF---AGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYF  231 (356)
Q Consensus       163 ~~g~~VlV~g~~g~--------vG~~---~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~  231 (356)
                      ..-++|||.|+ |+        .-.+   ++..+|..|.+++.+..+++....-. .+.-...+..-+..++.+.+++  
T Consensus         5 ~~~kkvlilGs-Gp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~-d~aD~lYfePlt~e~v~~Ii~~--   80 (127)
T d1a9xa3           5 TDIKSILILGA-GPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP-EMADATYIEPIHWEVVRKIIEK--   80 (127)
T ss_dssp             SSCCEEEEECC-CSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG-GGSSEEECSCCCHHHHHHHHHH--
T ss_pred             CCCCEEEEECC-CcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh-hhcceeeeecCCHHHHHHHHHH--
Confidence            34578999996 76        2244   44555566999999987776543222 2122222223333455555554  


Q ss_pred             CCCceEEEECCchh-hHHHHHHhc
Q 042784          232 PNGIDVYLDNVGGK-MLEAVLNHV  254 (356)
Q Consensus       232 ~~~~d~vld~~g~~-~~~~~~~~l  254 (356)
                       ...|.|+-..|+. .++-+.++.
T Consensus        81 -E~pd~il~~~GGQtalnla~~L~  103 (127)
T d1a9xa3          81 -ERPDAVLPTMGGQTALNCALELE  103 (127)
T ss_dssp             -HCCSEEECSSSHHHHHHHHHHHH
T ss_pred             -hCcCCeEEEeeeehHhHHHHHHH
Confidence             4578999999986 444444443

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=87.84  E-value=1.9  Score=32.10  Aligned_cols=99  Identities=12%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHHHhCCC-----ceeecCCh------h--h--HHHHHHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD--DNVKLLKEEFGYD-----DAFNYNSE------M--S--FDAALTK  229 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~--~~~~~~~~~~g~~-----~v~~~~~~------~--~--~~~~i~~  229 (356)
                      +|.|+|- |-+|.++.+++...+.+|+++-...  +...++- ++...     ..+...+.      +  .  -.....+
T Consensus         2 kigINGf-GRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl-~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~   79 (168)
T d2g82a1           2 KVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLL-KYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHH-HCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECC-cHHHHHHHHHHhcCCCEEEEECCCcchhhhhhee-ecccccCccccccccccceeEecceeEEEEecCChHH
Confidence            5889996 9999999998888888888876432  2333333 22211     00100000      0  0  0000122


Q ss_pred             HCC--CCceEEEECCch-hhHHHHHHhcccCCEEEEEeccc
Q 042784          230 YFP--NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMIS  267 (356)
Q Consensus       230 ~~~--~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~  267 (356)
                      +..  .++|+|+||+|. ...+.+..+++.+.+=|.+..+.
T Consensus        80 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~  120 (168)
T d2g82a1          80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA  120 (168)
T ss_dssp             CCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             CcccccCCceeEeccccccchHHhhhhhccccceeeecccc
Confidence            221  379999999997 35667777777776555565544

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=87.75  E-value=1  Score=37.58  Aligned_cols=101  Identities=13%  Similarity=0.089  Sum_probs=60.8

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CC--Cc-eeecCChhhHHHHHHHH--
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEF---GY--DD-AFNYNSEMSFDAALTKY--  230 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~---g~--~~-v~~~~~~~~~~~~i~~~--  230 (356)
                      ..+.+|++||=..+  ++|..++.++ ..|+ +|+.++.++...+.+++.+   |.  .. -+..   .+..+.++..  
T Consensus       140 ~~~~~g~~VLdlf~--~~G~~sl~aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~---~d~~~~l~~~~~  213 (317)
T d2b78a2         140 NGSAAGKTVLNLFS--YTAAFSVAAA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV---MDVFDYFKYARR  213 (317)
T ss_dssp             HTTTBTCEEEEETC--TTTHHHHHHH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE---SCHHHHHHHHHH
T ss_pred             HHhhCCCceeecCC--CCcHHHHHHH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE---ccHHHHHHHHHh
Confidence            44678999986643  2333334433 4677 8999999998888776432   32  11 1222   2333334332  


Q ss_pred             CCCCceEEEE---CCch-------------hhHHHHHHhcccCCEEEEEecc
Q 042784          231 FPNGIDVYLD---NVGG-------------KMLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       231 ~~~~~d~vld---~~g~-------------~~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      .+..||+||-   +.+.             +.+..++++|+|+|.++.+..+
T Consensus       214 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         214 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            2457999985   1211             2567788999999999876553

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.75  E-value=0.29  Score=39.54  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=28.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      .|+|.|| |..|+++..+++..|. +|.++.+++
T Consensus         3 ~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGA-GIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            6999998 9999999999999997 888887654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=87.58  E-value=0.73  Score=34.20  Aligned_cols=39  Identities=18%  Similarity=0.142  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHH
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNV  202 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~  202 (356)
                      .+..+|.|.|+ |.+|..++..+...|.  +++.++..+++.
T Consensus        18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            44579999997 9999999999999987  899998776654

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=87.04  E-value=3.5  Score=34.15  Aligned_cols=111  Identities=15%  Similarity=0.158  Sum_probs=67.5

Q ss_pred             HHHHHHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC---ChHHHHHHHHHhCCCceeecC----------
Q 042784          152 AWVGIEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG---SDDNVKLLKEEFGYDDAFNYN----------  218 (356)
Q Consensus       152 a~~~l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~---s~~~~~~~~~~~g~~~v~~~~----------  218 (356)
                      |+..+....+-.+..+|+... +|..|.++...++..|.+++++..   +..+.+.++ .+|+.-++...          
T Consensus        62 a~~~i~~~~~~~~~~~vv~as-sGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~-~~Ga~vi~~~~~~~~~~~~~~  139 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITAS-AGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVR-GFGGEVLLHGANFDEAKAKAI  139 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEE-CSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHH-HHSCEEECCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeeeecc-cchhHHHHHHhhccccccceeeccccchhHHHHHHH-hcCCEEEEcCcccccchhhhh
Confidence            444554433334445555555 599999999999999996655543   456777777 88986332111          


Q ss_pred             ---------------Ch------hhHHHHHHHHCCCCceEEEECCchh----hHHHHHHhcccCCEEEEEec
Q 042784          219 ---------------SE------MSFDAALTKYFPNGIDVYLDNVGGK----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       219 ---------------~~------~~~~~~i~~~~~~~~d~vld~~g~~----~~~~~~~~l~~~G~~v~~g~  265 (356)
                                     ++      .....++.+.. +.+|.|+-++|+.    .+...++.+.+.-+++.+..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~  210 (331)
T d1tdja1         140 ELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEA  210 (331)
T ss_dssp             HHHHHHCCEECCSSCCHHHHHHHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             hhhhcCCCccccccCChHHhhhhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecc
Confidence                           10      11222333332 3589999998863    34455566677778876643

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=86.83  E-value=3.4  Score=32.82  Aligned_cols=101  Identities=15%  Similarity=0.109  Sum_probs=63.7

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPN  233 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~  233 (356)
                      +...+....+||=.|  ||.|..+..+++.. +.++++++. ++-.+.+++   +.|....+.... .++.    +-.+.
T Consensus        75 ~~~d~~~~~~vlDvG--~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~-~d~~----~~~p~  146 (256)
T d1qzza2          75 DAYDWSAVRHVLDVG--GGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAE-GDFF----KPLPV  146 (256)
T ss_dssp             HTSCCTTCCEEEEET--CTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE-CCTT----SCCSC
T ss_pred             hcCCCccCCEEEEEC--CCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeee-eecc----ccccc
Confidence            345567778898888  67889999999987 669999985 554444432   334322222111 1111    11134


Q ss_pred             CceEEEECC-----chh----hHHHHHHhcccCCEEEEEecc
Q 042784          234 GIDVYLDNV-----GGK----MLEAVLNHVNVHARIILCGMI  266 (356)
Q Consensus       234 ~~d~vld~~-----g~~----~~~~~~~~l~~~G~~v~~g~~  266 (356)
                      ++|+++-..     ..+    .+.++.+.|+|+|+++.+...
T Consensus       147 ~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         147 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            689987532     222    578889999999999987653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.50  E-value=2.7  Score=34.62  Aligned_cols=101  Identities=15%  Similarity=0.113  Sum_probs=59.1

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH---hCCCc-eeecCChhhHHHHHHHHC--CCC
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE---FGYDD-AFNYNSEMSFDAALTKYF--PNG  234 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~---~g~~~-v~~~~~~~~~~~~i~~~~--~~~  234 (356)
                      +..++.+||=..+  +.|...+++++ .|++|+.++.++...+.+++.   .|... -+.+.. .|..+.+++..  +..
T Consensus       129 ~~~~~~rVLdlf~--~tG~~sl~aa~-~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~-~D~~~~l~~~~~~~~~  204 (309)
T d2igta1         129 TADRPLKVLNLFG--YTGVASLVAAA-AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC-EDAMKFIQREERRGST  204 (309)
T ss_dssp             HSSSCCEEEEETC--TTCHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC-SCHHHHHHHHHHHTCC
T ss_pred             hccCCCeEEEecC--CCcHHHHHHHh-CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEe-CCHHHhHHHHhhcCCC
Confidence            3566888876653  23444555443 588999999999888888742   23321 122211 34444444332  457


Q ss_pred             ceEEEE---CCch--------------hhHHHHHHhcccCCEEEEEec
Q 042784          235 IDVYLD---NVGG--------------KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       235 ~d~vld---~~g~--------------~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ||+||-   +.+.              ..+..+..+++++|.++++..
T Consensus       205 fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         205 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             CCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            999974   1110              134566778899997665544

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.45  E-value=0.52  Score=34.74  Aligned_cols=35  Identities=20%  Similarity=0.091  Sum_probs=29.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGS  198 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s  198 (356)
                      ..+++|+|+|| |.+|.-++..+...|+ .|+++.+.
T Consensus        43 ~~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeC
Confidence            34678999998 9999999999999999 67777654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=86.43  E-value=0.92  Score=33.92  Aligned_cols=100  Identities=12%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC---hHHHHHHHHHhCCCc-----eeecCCh------hh--H--HHHHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS---DDNVKLLKEEFGYDD-----AFNYNSE------MS--F--DAALT  228 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s---~~~~~~~~~~~g~~~-----v~~~~~~------~~--~--~~~i~  228 (356)
                      +|.|+|- |-+|.++.+.+...+.+|+++-..   .+...++- ++...+     -+...+.      ..  +  .....
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLl-kyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~   79 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMF-KYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE   79 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHH-HCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEECC-cHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHH-hcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence            6889995 999999998888778888777542   34555555 333210     0000000      00  0  00011


Q ss_pred             HHC--CCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccc
Q 042784          229 KYF--PNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       229 ~~~--~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ++.  .-++|+||||+|. ...+.+...+..+.+-|++..+..
T Consensus        80 ~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~  122 (169)
T d1dssg1          80 NIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSA  122 (169)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCS
T ss_pred             HCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCcc
Confidence            111  1279999999997 466777888888877677766543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.36  E-value=2.1  Score=32.80  Aligned_cols=73  Identities=21%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             HHHhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCC
Q 042784          156 IEVLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       156 l~~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      +...+++ .|++||=.|+ | .|.+++. +...|+ +|++++.+++..+.+++......++..    +    +.++ ++.
T Consensus        41 ~~~~~dl-~Gk~VLDlGc-G-tG~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~----D----~~~l-~~~  107 (197)
T d1ne2a_          41 IYNDGNI-GGRSVIDAGT-G-NGILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVA----D----VSEI-SGK  107 (197)
T ss_dssp             HHHHTSS-BTSEEEEETC-T-TCHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEEC----C----GGGC-CCC
T ss_pred             HHHcCCC-CCCEEEEeCC-C-CcHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEE----e----hhhc-CCc
Confidence            3345666 4899999885 3 3555554 444676 899999999999988844332333332    1    1222 357


Q ss_pred             ceEEEEC
Q 042784          235 IDVYLDN  241 (356)
Q Consensus       235 ~d~vld~  241 (356)
                      ||+||..
T Consensus       108 fD~Vi~N  114 (197)
T d1ne2a_         108 YDTWIMN  114 (197)
T ss_dssp             EEEEEEC
T ss_pred             ceEEEeC
Confidence            9999965

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.21  E-value=0.9  Score=36.03  Aligned_cols=35  Identities=37%  Similarity=0.449  Sum_probs=29.2

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHH-HHCCCEEEEEeCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLA-KLKGCKVVGSTGS  198 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la-~~~G~~V~~~~~s  198 (356)
                      -.|.+|+|.|- |.||..+++.+ +..|++|++++.+
T Consensus        29 l~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd~   64 (234)
T d1b26a1          29 PKKATVAVQGF-GNVGQFAALLISQELGSKVVAVSDS   64 (234)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeecC
Confidence            46899999995 99999988877 6789999887643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.04  E-value=0.46  Score=39.42  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      +...+|+|+|| |..||.|+..+...|.+|.+...+
T Consensus         3 ~~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence            34567999997 999999999999999999998754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.99  E-value=0.46  Score=39.63  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          165 GSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       165 g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      ..+|+|.|| |..|+.++..+...|.+|.+++.++
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCC
Confidence            578999997 9999999999888899999998654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.93  E-value=0.56  Score=32.83  Aligned_cols=88  Identities=10%  Similarity=0.059  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCCh-----------HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCce-eecCChhhHHHHHHHHCC
Q 042784          165 GSNVFVSAAAGG-----------VGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDA-FNYNSEMSFDAALTKYFP  232 (356)
Q Consensus       165 g~~VlV~g~~g~-----------vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v-~~~~~~~~~~~~i~~~~~  232 (356)
                      .++|||.|+ |+           .+.-++..+|..|.+++.+..+++....-. .+ ++++ |..-+...+.+.+++   
T Consensus         4 ~kkvlViGs-Gp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~-d~-aD~lYfeplt~e~v~~Ii~~---   77 (121)
T d1a9xa4           4 REKIMVLGG-GPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDY-DT-SDRLYFEPVTLEDVLEIVRI---   77 (121)
T ss_dssp             SCEEEEECC-CSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTST-TS-SSEEECCCCSHHHHHHHHHH---
T ss_pred             CCEEEEECC-CcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcCh-hh-cCceEEccCCHHHHHHHHHH---
Confidence            468999996 76           233445556677999998887776544211 11 2222 222222444444544   


Q ss_pred             CCceEEEECCchhhHHHHHHhcccCC
Q 042784          233 NGIDVYLDNVGGKMLEAVLNHVNVHA  258 (356)
Q Consensus       233 ~~~d~vld~~g~~~~~~~~~~l~~~G  258 (356)
                      ...|.|+-..|+.....+...|...|
T Consensus        78 E~p~~ii~~~GGQtalnla~~L~~~g  103 (121)
T d1a9xa4          78 EKPKGVIVQYGGQTPLKLARALEAAG  103 (121)
T ss_dssp             HCCSEEECSSSTHHHHTTHHHHHHTT
T ss_pred             hCCCEEEeehhhhhHHHHHHHHHHcC
Confidence            35688888888864333333343444

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.25  Score=39.72  Aligned_cols=46  Identities=15%  Similarity=0.005  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Q 042784          161 QPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEE  208 (356)
Q Consensus       161 ~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~  208 (356)
                      ...+|.+||=.|. | .|..+..+++..+.+|++++.|+...+.+++.
T Consensus        48 ~~~~g~~vLDlGc-G-~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~   93 (257)
T d2a14a1          48 GGLQGDTLIDIGS-G-PTIYQVLAACDSFQDITLSDFTDRNREELEKW   93 (257)
T ss_dssp             TSCCEEEEEESSC-T-TCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred             cCCCCCEEEEECC-C-CCHhHHHHhccccCcEEEecCCHHHHHHHHHH
Confidence            4567889988885 4 35545555544334899999999999888743

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.62  E-value=1.7  Score=32.29  Aligned_cols=74  Identities=11%  Similarity=0.056  Sum_probs=44.5

Q ss_pred             CCCEEEEEcCCChHHHH--HHHHHHHC-C---CEEEEEeCChHHHHHHH-------HHhCCCceeecCChhhHHHHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMF--AGQLAKLK-G---CKVVGSTGSDDNVKLLK-------EEFGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~--~i~la~~~-G---~~V~~~~~s~~~~~~~~-------~~~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      +.-+|.|.|| |++|..  ...+++.. .   .+++..+..+++.+...       ..++....+...  .+..+.+   
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~eal---   75 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT--TDPEEAF---   75 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE--SCHHHHH---
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec--CChhhcc---
Confidence            3457899998 777643  33444433 2   38999998888765321       134444333333  3444444   


Q ss_pred             CCCCceEEEECCchh
Q 042784          231 FPNGIDVYLDNVGGK  245 (356)
Q Consensus       231 ~~~~~d~vld~~g~~  245 (356)
                        +++|+|+.++|..
T Consensus        76 --~~AD~Vvitag~~   88 (167)
T d1u8xx1          76 --TDVDFVMAHIRVG   88 (167)
T ss_dssp             --SSCSEEEECCCTT
T ss_pred             --CCCCEEEECCCcC
Confidence              5699999999853

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=85.57  E-value=5.3  Score=32.60  Aligned_cols=54  Identities=20%  Similarity=0.295  Sum_probs=38.2

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeC---ChHHHHHHHHHhCCCce
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG---SDDNVKLLKEEFGYDDA  214 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~---s~~~~~~~~~~~g~~~v  214 (356)
                      .+.+.++++|+... +|+-|.++...++..|.+.+++..   +..+...++ .+|+..+
T Consensus        55 ~g~~~~~~~vv~~S-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~vv  111 (310)
T d1y7la1          55 DGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLC-GLGVNLV  111 (310)
T ss_dssp             TTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHH-HTTCEEE
T ss_pred             cCCCCCCceeeeec-CCCchHHHHHHHHHhhccccccchhhhhhhhhhhHH-HhCCceE
Confidence            45667777765555 699999999999999995444432   345666666 8887644

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.54  E-value=0.8  Score=38.26  Aligned_cols=92  Identities=14%  Similarity=0.067  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCCChHHHHHHHHHH-HCCC-EEEEEeCChHHHHHHHHH---hCCCceeecCChhhHHHHHHHHCCCCceE
Q 042784          163 KSGSNVFVSAAAGGVGMFAGQLAK-LKGC-KVVGSTGSDDNVKLLKEE---FGYDDAFNYNSEMSFDAALTKYFPNGIDV  237 (356)
Q Consensus       163 ~~g~~VlV~g~~g~vG~~~i~la~-~~G~-~V~~~~~s~~~~~~~~~~---~g~~~v~~~~~~~~~~~~i~~~~~~~~d~  237 (356)
                      +...++.|.|+ |..+.+.++.+. .+.. +|.+..+++++.+.+.+.   .+.. +..     +..+.+     .++|+
T Consensus       123 ~~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~-~~~-----~~~~a~-----~~aDi  190 (320)
T d1omoa_         123 KNSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGIS-ASV-----QPAEEA-----SRCDV  190 (320)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCC-EEE-----CCHHHH-----TSSSE
T ss_pred             CCccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCc-ccc-----chhhhh-----ccccE
Confidence            44578999996 999988776655 4566 899999998887665433   2332 221     112223     35899


Q ss_pred             EEECCchh--hHHHHHHhcccCCEEEEEecccc
Q 042784          238 YLDNVGGK--MLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       238 vld~~g~~--~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      |+.|+.+.  .+.  .+.++++-++..+|....
T Consensus       191 V~taT~s~~P~~~--~~~l~~G~hv~~iGs~~p  221 (320)
T d1omoa_         191 LVTTTPSRKPVVK--AEWVEEGTHINAIGADGP  221 (320)
T ss_dssp             EEECCCCSSCCBC--GGGCCTTCEEEECSCCST
T ss_pred             EEEeccCcccccc--hhhcCCCCeEeecCCccc
Confidence            99998763  332  246899999999988654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=85.27  E-value=0.37  Score=38.39  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=27.5

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      |+|.|| |..|++++..+...|.+|++++..+
T Consensus         5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            789997 9999998888888999999998654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=85.19  E-value=0.37  Score=38.66  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCChH
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDD  200 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~  200 (356)
                      |+|.|| |+.|++++..|...|.+|.+++.+++
T Consensus         7 ViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           7 NIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            889997 99999998888889999999997654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=85.09  E-value=0.38  Score=36.23  Aligned_cols=31  Identities=16%  Similarity=0.107  Sum_probs=26.2

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEE
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGS  195 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~  195 (356)
                      ++++|+|.|+ |.+|+-++..++.+|.++.++
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEE
Confidence            5789999998 999999999999999854443

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=85.05  E-value=1.3  Score=32.84  Aligned_cols=100  Identities=14%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCCh--HHHHHHHHHhCCC-----ceeecCCh------hh----HHHHHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSD--DNVKLLKEEFGYD-----DAFNYNSE------MS----FDAALT  228 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~--~~~~~~~~~~g~~-----~v~~~~~~------~~----~~~~i~  228 (356)
                      +|.|+|- |-+|.++.+.+.... .+|+++-...  +....+- ++...     .-+...+.      ..    -.....
T Consensus         3 kigINGF-GRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl-~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~   80 (166)
T d1gado1           3 KVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYML-KYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA   80 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHH-HCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhh-eecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChH
Confidence            5889996 999999998887664 4888776543  2333333 22210     00100000      00    000011


Q ss_pred             HHCC--CCceEEEECCch-hhHHHHHHhcccCCEEEEEecccc
Q 042784          229 KYFP--NGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       229 ~~~~--~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ++..  -++|+||||+|. ...+.+..++..+.+-|.+..+..
T Consensus        81 ~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~  123 (166)
T d1gado1          81 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK  123 (166)
T ss_dssp             GGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             HCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeecccc
Confidence            1111  269999999997 466677778888866666665543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=85.03  E-value=0.36  Score=38.36  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=27.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCCh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSD  199 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~  199 (356)
                      +|+|.|| |..|+.++..++..|. +|++++.++
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            4899997 9999999998988997 699988653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=0.43  Score=35.93  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=26.5

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeC
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTG  197 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~  197 (356)
                      |+|.|| |+.|+.+...+...|.+|.++.+
T Consensus         4 ViIIGg-GpaGl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           4 VLIVGS-GPAGAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECS
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCeEEEEEE
Confidence            789997 99999999999999999998874

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.74  E-value=8.4  Score=31.06  Aligned_cols=103  Identities=18%  Similarity=0.243  Sum_probs=62.0

Q ss_pred             hCCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEe---CChHHHHHHHHHhCCCceeec------------------
Q 042784          159 LGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGST---GSDDNVKLLKEEFGYDDAFNY------------------  217 (356)
Q Consensus       159 ~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~---~s~~~~~~~~~~~g~~~v~~~------------------  217 (356)
                      .+.++++.+|+..+ +|.-|.++...++..|.+.+++.   .++.+...++ .+|+..+...                  
T Consensus        55 ~g~~~~~~~vv~as-sGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~-~~ga~v~~~~~~~~~~~~~~~~~~~~~~  132 (302)
T d1fcja_          55 RGVLKPGVELVEPT-NGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLK-ALGANLVLTEGAKGMKGAIQKAEEIVAS  132 (302)
T ss_dssp             HTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHH-HTTCEEEEECGGGHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCceEEEec-cccchhHHHHHHHHhccCCceEEeecCcHHHHHHHH-HhccceEEeccccccchhhhHHHHHHhh
Confidence            46677777765555 69999999999999998544443   2445666666 7777522110                  


Q ss_pred             -----------CCh-------hhHHHHHHHHCCCCceEEEECCchh----hHHHHHHhcccCCEEEEE
Q 042784          218 -----------NSE-------MSFDAALTKYFPNGIDVYLDNVGGK----MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       218 -----------~~~-------~~~~~~i~~~~~~~~d~vld~~g~~----~~~~~~~~l~~~G~~v~~  263 (356)
                                 ...       .....++.+..+..+|+++-++|+.    .+...++...+...++.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v  200 (302)
T d1fcja_         133 DPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITV  200 (302)
T ss_dssp             STTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEE
T ss_pred             hccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeeeecccccccccc
Confidence                       000       1133445555555789999998873    333444445555443333

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.71  E-value=2.1  Score=30.14  Aligned_cols=60  Identities=13%  Similarity=0.142  Sum_probs=46.0

Q ss_pred             HhCCCCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCceeecC
Q 042784          158 VLGQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC-KVVGSTGSDDNVKLLKEEFGYDDAFNYN  218 (356)
Q Consensus       158 ~~~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~-~V~~~~~s~~~~~~~~~~~g~~~v~~~~  218 (356)
                      +.++++.-+.+++.-..-..-+.+++++|.+|. ++++...+++..+.++ ++|++.++++.
T Consensus        59 ~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~-~~G~d~vi~p~  119 (132)
T d1lssa_          59 EDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFE-RLGVDVVVSPE  119 (132)
T ss_dssp             HHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHH-HTTCSEEECHH
T ss_pred             hhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHH-HCCCCEEECHH
Confidence            356677777766654334466788899999998 8888888888888888 99999888653

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=84.68  E-value=5.2  Score=29.54  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=58.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEEEeC---ChHHHHHHHHHhCCCc------e-ee-----cCChh-h--HHHHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTG---SDDNVKLLKEEFGYDD------A-FN-----YNSEM-S--FDAAL  227 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~---s~~~~~~~~~~~g~~~------v-~~-----~~~~~-~--~~~~i  227 (356)
                      +|.|+|- |-+|.++.+.+... ..+|+++-.   +.+...++- ++...+      + ++     ..... .  -....
T Consensus         3 kIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLl-kyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p   80 (169)
T d1u8fo1           3 KVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMF-QYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   80 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHH-HCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECC-cHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHH-hhccccCCcCCeEEEECCEEEECCEEEEEEECCCh
Confidence            6899996 99999999877655 468887754   234555554 322210      0 00     00000 0  00012


Q ss_pred             HHHC--CCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccc
Q 042784          228 TKYF--PNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       228 ~~~~--~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      .++.  .-++|+|+||+|. ...+.+...+..+.+-|++..+..
T Consensus        81 ~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~  124 (169)
T d1u8fo1          81 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSA  124 (169)
T ss_dssp             GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCS
T ss_pred             hhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeeccccc
Confidence            2222  2379999999997 466677778888876676766543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=84.23  E-value=1.3  Score=31.92  Aligned_cols=34  Identities=24%  Similarity=0.151  Sum_probs=26.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDN  201 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~  201 (356)
                      +|.|.|+ |.+|..++..+...+.  ++..++..+++
T Consensus         3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            6889997 9999999988888876  89999877765

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.14  E-value=3.7  Score=29.39  Aligned_cols=35  Identities=17%  Similarity=0.048  Sum_probs=28.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNV  202 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~  202 (356)
                      +|.|.|+ |.+|..++..+...|.  ++..++..+++.
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~   38 (142)
T d1ojua1           2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLA   38 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHH
T ss_pred             EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchh
Confidence            5789996 9999998887777775  899998777663

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=84.09  E-value=2.7  Score=30.34  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=29.2

Q ss_pred             CEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHH
Q 042784          166 SNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNV  202 (356)
Q Consensus       166 ~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~  202 (356)
                      .+|.|.|+ |.+|..++..+...|.  +++..+..+++.
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            57899996 9999998887777774  888888777654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.07  E-value=3.8  Score=33.16  Aligned_cols=99  Identities=12%  Similarity=0.156  Sum_probs=57.4

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCc
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKG-CKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGI  235 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G-~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~  235 (356)
                      ...++|++||=.-|  +-|-=+++++.... .+|++.+.++.|...+++   .+|...+...........   ......|
T Consensus        98 L~~~~g~~vLD~CA--aPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~---~~~~~~f  172 (284)
T d1sqga2          98 LAPQNGEHILDLCA--APGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ---WCGEQQF  172 (284)
T ss_dssp             HCCCTTCEEEEESC--TTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH---HHTTCCE
T ss_pred             cCccccceeEeccC--ccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccch---hcccccc
Confidence            35788999875532  22333345554443 489999999988766643   567653332221111111   1223569


Q ss_pred             eEEEE---CCchh--------------------------hHHHHHHhcccCCEEEEE
Q 042784          236 DVYLD---NVGGK--------------------------MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       236 d~vld---~~g~~--------------------------~~~~~~~~l~~~G~~v~~  263 (356)
                      |.||-   |+|..                          .+..+++.++++|++|..
T Consensus       173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYs  229 (284)
T d1sqga2         173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA  229 (284)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence            98874   76632                          235566778888887744

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.84  E-value=0.28  Score=37.51  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      ++..|+|.|+ |+.|+.++..+...|.+|+++.+.
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEEee
Confidence            3567999998 999999999999999999888743

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=83.82  E-value=0.63  Score=34.01  Aligned_cols=88  Identities=20%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             EEEEEcCCChHHHHHHHHHH-HC---CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          167 NVFVSAAAGGVGMFAGQLAK-LK---GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~-~~---G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +|.|.||+|-+|.-.++++. +.   ..++.....+.......  .++......... .+. +.+     ..+|+||-|+
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~--~~~~~~~~~~~~-~~~-~~~-----~~~DvvF~al   72 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAP--NFGKDAGMLHDA-FDI-ESL-----KQLDAVITCQ   72 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCC--CSSSCCCBCEET-TCH-HHH-----TTCSEEEECS
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccc--ccCCcceeeecc-cch-hhh-----ccccEEEEec
Confidence            68999999999999998554 22   34666655332111111  122111111100 111 111     4589999999


Q ss_pred             chhhHHHHH-HhcccCC--EEEEE
Q 042784          243 GGKMLEAVL-NHVNVHA--RIILC  263 (356)
Q Consensus       243 g~~~~~~~~-~~l~~~G--~~v~~  263 (356)
                      +...-.... ++++.+-  .++..
T Consensus        73 p~~~s~~~~~~l~~~g~~~~VIDl   96 (147)
T d1mb4a1          73 GGSYTEKVYPALRQAGWKGYWIDA   96 (147)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEES
T ss_pred             CchHHHHHhHHHHHcCCceEEEeC
Confidence            987444444 4444442  25544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=83.77  E-value=0.39  Score=39.02  Aligned_cols=31  Identities=26%  Similarity=0.266  Sum_probs=27.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      +|+|+|| |..|+.++..+...|.+|++++.+
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGG-GISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899997 999999999999999999999854

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.74  E-value=0.45  Score=36.98  Aligned_cols=30  Identities=23%  Similarity=0.169  Sum_probs=27.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      |+|+|+ |+.|+.++..+...|.+|++++..
T Consensus         6 vvVIGg-GpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           6 VVIIGG-GPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCcEEEEEec
Confidence            788997 999999999999999999999854

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.74  E-value=3.3  Score=34.13  Aligned_cols=98  Identities=18%  Similarity=0.172  Sum_probs=60.3

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCC
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGC--KVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNG  234 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~--~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~  234 (356)
                      .+.++|++||=.  +.+-|-=+++++..++-  .|++.+.++.|...+++   .+|...+..... ...  .+ ......
T Consensus       112 l~~~~g~~vlD~--CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~-d~~--~~-~~~~~~  185 (313)
T d1ixka_         112 LDPKPGEIVADM--AAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS-SSL--HI-GELNVE  185 (313)
T ss_dssp             HCCCTTCEEEEC--CSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS-CGG--GG-GGGCCC
T ss_pred             ccCCccceeeec--ccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccc-ccc--cc-cccccc
Confidence            457899987533  33344445666666643  89999999988876642   577765554432 111  01 112346


Q ss_pred             ceEEEE---CCchh--------------------------hHHHHHHhcccCCEEEEE
Q 042784          235 IDVYLD---NVGGK--------------------------MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       235 ~d~vld---~~g~~--------------------------~~~~~~~~l~~~G~~v~~  263 (356)
                      ||.|+-   |+|..                          .+..++++++++|++|..
T Consensus       186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYs  243 (313)
T d1ixka_         186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS  243 (313)
T ss_dssp             EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEe
Confidence            888874   66531                          346678888999987744

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=83.70  E-value=1.7  Score=32.24  Aligned_cols=82  Identities=16%  Similarity=0.153  Sum_probs=53.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEECCchh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNVGGK  245 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~  245 (356)
                      +|.|.|. |.+|...+..++.. +++++++.....+      ......+..+.   +..    .+ ...+|+|+.|++..
T Consensus         5 rvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~------~~~~~~~~~~~---~~~----~~-~~~~D~Vvi~tp~~   69 (170)
T d1f06a1           5 RVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRAT------LDTKTPVFDVA---DVD----KH-ADDVDVLFLCMGSA   69 (170)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSC------CSSSSCEEEGG---GGG----GT-TTTCSEEEECSCTT
T ss_pred             eEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccc------cccccccccch---hhh----hh-ccccceEEEeCCCc
Confidence            6899995 99998887777765 5677766643321      11112233332   111    11 13599999999875


Q ss_pred             -hHHHHHHhcccCCEEEEE
Q 042784          246 -MLEAVLNHVNVHARIILC  263 (356)
Q Consensus       246 -~~~~~~~~l~~~G~~v~~  263 (356)
                       ..+.+.++|+.|.+++..
T Consensus        70 ~h~~~a~~aL~aG~~vv~~   88 (170)
T d1f06a1          70 TDIPEQAPKFAQFACTVDT   88 (170)
T ss_dssp             THHHHHHHHHTTTSEEECC
T ss_pred             ccHHHHHHHHHCCCcEEEe
Confidence             788899999999887754

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=83.39  E-value=6.4  Score=29.03  Aligned_cols=74  Identities=19%  Similarity=0.199  Sum_probs=45.1

Q ss_pred             CCCEEEEEcCCChHHHHHH---HHHH--HC-CCEEEEEeCChHHHHHHH-------HHhCCCceeecCChhhHHHHHHHH
Q 042784          164 SGSNVFVSAAAGGVGMFAG---QLAK--LK-GCKVVGSTGSDDNVKLLK-------EEFGYDDAFNYNSEMSFDAALTKY  230 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i---~la~--~~-G~~V~~~~~s~~~~~~~~-------~~~g~~~v~~~~~~~~~~~~i~~~  230 (356)
                      |+-+|.|.|| |.+|....   .+++  .+ +-+++.++..+++.+...       ..++...-+...  .+..+.+   
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~--td~~eaL---   74 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT--MNLDDVI---   74 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE--SCHHHHH---
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe--CChhhcc---
Confidence            4568999997 99985422   2333  22 348999998887765321       134444333332  3444444   


Q ss_pred             CCCCceEEEECCchh
Q 042784          231 FPNGIDVYLDNVGGK  245 (356)
Q Consensus       231 ~~~~~d~vld~~g~~  245 (356)
                        .++|+|+.+.+..
T Consensus        75 --~dad~Vv~~~~~g   87 (171)
T d1obba1          75 --IDADFVINTAMVG   87 (171)
T ss_dssp             --TTCSEEEECCCTT
T ss_pred             --cCCCeEeeecccc
Confidence              4699999998753

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.85  E-value=0.58  Score=36.66  Aligned_cols=31  Identities=26%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      |+|+|+ |..|+.++..+...|.+|.+++.++
T Consensus         8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            789997 9999999988888999999999754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.78  E-value=0.53  Score=38.97  Aligned_cols=32  Identities=25%  Similarity=0.203  Sum_probs=28.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      .|+|+|| |..|++++..++..|.+|.+.+..+
T Consensus         9 dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGA-GFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            5899998 9999999999999999999988653

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.05  E-value=5.1  Score=29.81  Aligned_cols=88  Identities=15%  Similarity=0.050  Sum_probs=48.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHH---HhCCCceeecCChhhHHHHHHHHCCCCceEEEECC
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK-GCKVVGSTGSDDNVKLLKE---EFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDNV  242 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~-G~~V~~~~~s~~~~~~~~~---~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~~  242 (356)
                      +|.|.||+|-+|.-.++++... .+++..+..+....+.+.+   .+-....+...+   ..+..     .++|++|-|.
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~---~~~~~-----~~~dvvf~a~   74 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFD---PEKVS-----KNCDVLFTAL   74 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCC---HHHHH-----HHCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccC---HhHhc-----cccceEEEcc
Confidence            6899999999999999888765 4577766633322222221   111121222222   11111     1389999999


Q ss_pred             chhhHHHHHHhcccCCEEEEE
Q 042784          243 GGKMLEAVLNHVNVHARIILC  263 (356)
Q Consensus       243 g~~~~~~~~~~l~~~G~~v~~  263 (356)
                      +........... .+-+++..
T Consensus        75 p~~~s~~~~~~~-~~~~VIDl   94 (176)
T d1vkna1          75 PAGASYDLVREL-KGVKIIDL   94 (176)
T ss_dssp             STTHHHHHHTTC-CSCEEEES
T ss_pred             ccHHHHHHHHhh-ccceEEec
Confidence            886444333332 34455543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=81.87  E-value=1.1  Score=34.34  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=57.6

Q ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeecCChhhHHHHHHHHCCCCceEEEEC
Q 042784          162 PKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNYNSEMSFDAALTKYFPNGIDVYLDN  241 (356)
Q Consensus       162 ~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~~~~~~~~~~i~~~~~~~~d~vld~  241 (356)
                      +.++.+||=.|+ | .|..+..+     .++++++.|++..+.++ +-+.. ++.... .++     ...++.||+|+..
T Consensus        34 ~~~~~~vLDiGc-G-~G~~~~~~-----~~~~giD~s~~~~~~a~-~~~~~-~~~~d~-~~l-----~~~~~~fD~I~~~   98 (208)
T d1vlma_          34 LLPEGRGVEIGV-G-TGRFAVPL-----KIKIGVEPSERMAEIAR-KRGVF-VLKGTA-ENL-----PLKDESFDFALMV   98 (208)
T ss_dssp             HCCSSCEEEETC-T-TSTTHHHH-----TCCEEEESCHHHHHHHH-HTTCE-EEECBT-TBC-----CSCTTCEEEEEEE
T ss_pred             hCCCCeEEEECC-C-Cccccccc-----ceEEEEeCChhhccccc-ccccc-cccccc-ccc-----ccccccccccccc
Confidence            356778999985 3 45555444     35689999999999998 54443 332211 111     1123569999875


Q ss_pred             Cch-------hhHHHHHHhcccCCEEEEEec
Q 042784          242 VGG-------KMLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       242 ~g~-------~~~~~~~~~l~~~G~~v~~g~  265 (356)
                      ..-       ..++++.+.|+|+|.++....
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccccchhhhhhcCCCCceEEEEec
Confidence            432       267889999999999886543

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.64  E-value=3.1  Score=30.41  Aligned_cols=45  Identities=20%  Similarity=0.355  Sum_probs=37.6

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFG  210 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g  210 (356)
                      +|++|.|.+.+|+.|.+++..+...|.++-.  .+++..+.+++.+.
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~--l~~~t~~~L~~~lp   46 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLAT--LEEKTIEELRSFLP   46 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEECC--CCHHHHHHHHHHSC
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccCC--CCHHHHHHHHHhCC
Confidence            5899999999999999999999999987754  47888888884444

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=81.47  E-value=0.69  Score=35.82  Aligned_cols=30  Identities=17%  Similarity=0.106  Sum_probs=27.2

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      |+|.|+ |+.|+.++..|..+|.+|.++...
T Consensus         5 vvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGG-GSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEecc
Confidence            789997 999999999999999999999854

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=81.04  E-value=5.4  Score=29.57  Aligned_cols=100  Identities=13%  Similarity=0.095  Sum_probs=56.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHHC----CCEEEEEeC--ChHHHHHHHHHhCCCc-----eeecCCh------hh----HHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLK----GCKVVGSTG--SDDNVKLLKEEFGYDD-----AFNYNSE------MS----FDA  225 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~----G~~V~~~~~--s~~~~~~~~~~~g~~~-----v~~~~~~------~~----~~~  225 (356)
                      +|.|+|- |-+|.+....+-..    ..+|+++-.  +.+....+- ++...+     -+...+.      ..    -..
T Consensus         3 kigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLl-kyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~   80 (173)
T d1obfo1           3 RVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLT-RYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR   80 (173)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHH-HEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred             EEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhh-cccccCCCcCceEEeccceEEECCEEEEEEecC
Confidence            5889995 99999988776543    246777663  333444443 322110     0100000      00    000


Q ss_pred             HHHHHC--CCCceEEEECCch-hhHHHHHHhcccCCEEEEEecccc
Q 042784          226 ALTKYF--PNGIDVYLDNVGG-KMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       226 ~i~~~~--~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      ...++.  .-++|+|+||+|. .....+...|..+.+-|++..+..
T Consensus        81 ~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  126 (173)
T d1obfo1          81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG  126 (173)
T ss_dssp             CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC
T ss_pred             CHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCC
Confidence            122222  2379999999997 466777788888877676765543

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=80.94  E-value=12  Score=30.07  Aligned_cols=106  Identities=20%  Similarity=0.307  Sum_probs=63.4

Q ss_pred             hCCCCCCC-EEEEEcCCChHHHHHHHHHHHCCCEEEEEeC---ChHHHHHHHHHhCCCceeec-----------------
Q 042784          159 LGQPKSGS-NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTG---SDDNVKLLKEEFGYDDAFNY-----------------  217 (356)
Q Consensus       159 ~~~~~~g~-~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~---s~~~~~~~~~~~g~~~v~~~-----------------  217 (356)
                      .+.++++. +.+|...+|..|.++...++.+|.+.+++..   ++.+...++ .+|+..+...                 
T Consensus        54 ~g~~~~~~~~~vv~~SsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~~~~~~~-~~ga~~~~~~~~~~~~~~~~~~~~~~~  132 (302)
T d1ve1a1          54 RGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLK-AFGAELVLTDPERRMLAAREEALRLKE  132 (302)
T ss_dssp             TTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHH-HTTCEEEEECTTTHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCCcEEEEecCCcchhhhhhhhhccCcceeEeeecccchheeehhh-hhhhcchhcccccchHHHHHHhhhhhh
Confidence            34444443 4556666799999999999999995444432   334455555 6666432211                 


Q ss_pred             ----------CCh-------hhHHHHHHHHCCCCceEEEECCchh----hHHHHHHhcccCCEEEEEec
Q 042784          218 ----------NSE-------MSFDAALTKYFPNGIDVYLDNVGGK----MLEAVLNHVNVHARIILCGM  265 (356)
Q Consensus       218 ----------~~~-------~~~~~~i~~~~~~~~d~vld~~g~~----~~~~~~~~l~~~G~~v~~g~  265 (356)
                                .+.       .....+|.+..++.+|.|+-++|+.    .+...++...+.-+++.+..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~t~~~EI~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve~  201 (302)
T d1ve1a1         133 ELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEP  201 (302)
T ss_dssp             HHTCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             ccCccccccCccchhHHHHHHHHHHHHHHHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                      111       1122334444555699999998863    34455666777788876654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.74  E-value=9.1  Score=28.50  Aligned_cols=105  Identities=19%  Similarity=0.236  Sum_probs=65.1

Q ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCceeec-CChhhHHHHHHHHCCCCceEE
Q 042784          160 GQPKSGSNVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLKEEFGYDDAFNY-NSEMSFDAALTKYFPNGIDVY  238 (356)
Q Consensus       160 ~~~~~g~~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~~~~g~~~v~~~-~~~~~~~~~i~~~~~~~~d~v  238 (356)
                      ..+++|.+ +|-+..|+=|. +-.+++. +.+|+++++.++..+.++ ..-...+--+ .+..++.+.+..+.-+.+|.|
T Consensus        14 l~~~~g~~-~vD~T~G~GGh-s~~iL~~-~~~viaiD~D~~ai~~a~-~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgI   89 (182)
T d1wg8a2          14 LAVRPGGV-YVDATLGGAGH-ARGILER-GGRVIGLDQDPEAVARAK-GLHLPGLTVVQGNFRHLKRHLAALGVERVDGI   89 (182)
T ss_dssp             HTCCTTCE-EEETTCTTSHH-HHHHHHT-TCEEEEEESCHHHHHHHH-HTCCTTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred             cCCCCCCE-EEEeCCCCcHH-HHHHhcc-cCcEEEEhhhhhHHHHHh-hccccceeEeehHHHHHHHHHHHcCCCccCEE
Confidence            34678886 46665555554 4455554 569999999999988887 4332222111 122456666555544578887


Q ss_pred             EECCch----------------hhHHHHHHhcccCCEEEEEecccc
Q 042784          239 LDNVGG----------------KMLEAVLNHVNVHARIILCGMISQ  268 (356)
Q Consensus       239 ld~~g~----------------~~~~~~~~~l~~~G~~v~~g~~~~  268 (356)
                      +==.|-                ..+..+++.++++|+++.+...+.
T Consensus        90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~  135 (182)
T d1wg8a2          90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL  135 (182)
T ss_dssp             EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH
T ss_pred             EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc
Confidence            632332                146677788899998887766443

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=80.58  E-value=0.87  Score=35.64  Aligned_cols=31  Identities=29%  Similarity=0.144  Sum_probs=27.6

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCCh
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSD  199 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~  199 (356)
                      |+|.|+ |+.|+.+...|...|.+|.+++..+
T Consensus         9 viIIG~-GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGG-GPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCeEEEEeccC
Confidence            788997 9999999999999999999998543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.50  E-value=1.2  Score=30.81  Aligned_cols=34  Identities=9%  Similarity=0.029  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCChHHHHHHHHHHHC---CCEEEEEeCC
Q 042784          164 SGSNVFVSAAAGGVGMFAGQLAKLK---GCKVVGSTGS  198 (356)
Q Consensus       164 ~g~~VlV~g~~g~vG~~~i~la~~~---G~~V~~~~~s  198 (356)
                      ..++++|.|| |.+|+-+++++..+   |.+|..+.++
T Consensus        17 ~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~   53 (117)
T d1feca2          17 APKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRG   53 (117)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             cCCeEEEECC-ChHHHHHHHHhHhhcccccccceeccc
Confidence            3589999998 99998877665443   7799988865

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.40  E-value=1.7  Score=33.37  Aligned_cols=39  Identities=21%  Similarity=0.353  Sum_probs=34.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGCKVVGSTGSDDNVKLLK  206 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s~~~~~~~~  206 (356)
                      +|.|.|. |=+|+..+..+...|.+|++.+.++++.+.+.
T Consensus         2 kI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGL-GYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            5889996 99999988888888999999999998888886

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=80.35  E-value=0.18  Score=42.24  Aligned_cols=30  Identities=17%  Similarity=0.147  Sum_probs=24.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHHCCC------EEEEEe
Q 042784          167 NVFVSAAAGGVGMFAGQLAKLKGC------KVVGST  196 (356)
Q Consensus       167 ~VlV~g~~g~vG~~~i~la~~~G~------~V~~~~  196 (356)
                      +|||+||+|-+|..++..+...|.      +|+..+
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d   37 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD   37 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEe
Confidence            699999999999999988877664      566655

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.17  E-value=0.91  Score=35.07  Aligned_cols=30  Identities=30%  Similarity=0.192  Sum_probs=26.8

Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCEEEEEeCC
Q 042784          168 VFVSAAAGGVGMFAGQLAKLKGCKVVGSTGS  198 (356)
Q Consensus       168 VlV~g~~g~vG~~~i~la~~~G~~V~~~~~s  198 (356)
                      |+|.|+ |+.|+.++..|...|.+|.++...
T Consensus         6 viVIG~-GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGA-GPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEecC
Confidence            678897 999999999999999999999754

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.03  E-value=0.9  Score=30.60  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=25.9

Q ss_pred             eeEEEEEeccCCC----------CCCCCCEEEeccCCe-------eeEEeecCCccc
Q 042784           88 AFGIARVIRSKDS----------KYSDGDIVLRAFLPV-------AEYSLLPCDLLT  127 (356)
Q Consensus        88 ~~G~v~~vg~~v~----------~~~~Gd~V~~~~g~~-------a~~~~v~~~~~~  127 (356)
                      ..|.|+.+|++..          .+++||+|++...+-       .+|.+++++.++
T Consensus        38 ~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~dg~~y~ii~e~dIl   94 (99)
T d1p3ha_          38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVL   94 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEETTEEEEEEEGGGEE
T ss_pred             eEEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEECCEEEEEEEHHHEE
Confidence            4599999998532          389999999643221       455555555443