Citrus Sinensis ID: 042821


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80-
AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHGYNVSQ
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccc
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccc
AEELKGKVKTTIKYatepldqleQIDNLQRLGLAYHFQTEIRNILHGiynnnkddnwrnknVYAASVEFRLLRqhgynvsq
aeelkgkvkttikyatepldqleQIDNLQRLGLAYHFQTEIRNILHGIynnnkddnwRNKNVYAASVEFrllrqhgynvsq
AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYnnnkddnwrnknVYAASVEFRLLRQHGYNVSQ
**********TIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHG*****
AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHGYN***
AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHGYNVSQ
AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHGYNV**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
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AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHGYNVSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query81 2.2.26 [Sep-21-2011]
Q8L5K3 606 (R)-limonene synthase 1 O N/A no 1.0 0.133 0.765 2e-22
Q93X23 597 Myrcene synthase, chlorop N/A no 0.962 0.130 0.544 6e-19
Q6PWU2 590 (-)-alpha-terpineol synth no no 0.987 0.135 0.543 9e-19
Q2XSC4 538 Exo-alpha-bergamotene syn N/A no 0.975 0.146 0.456 2e-13
Q5SBP4 541 Alpha-zingiberene synthas N/A no 1.0 0.149 0.452 1e-12
Q9ZUH4 591 Tricyclene synthase, chlo yes no 0.765 0.104 0.523 2e-12
B3TPQ7 592 Alpha-terpineol synthase, N/A no 0.987 0.135 0.45 2e-12
O81193 590 (+)-sabinene synthase, ch N/A no 0.950 0.130 0.455 2e-12
Q9SPN0 567 R-linalool synthase QH1, N/A no 1.0 0.142 0.469 2e-12
B5A434 576 (+)-alpha-terpineol synth N/A no 0.987 0.138 0.456 3e-12
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function desciption
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 69/81 (85%)

Query: 1   AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNK 60
           AEEL+GKVK  IK   EPLDQLE IDNLQRLGLA+ F+TEIRNIL+ IYNNNKD NWR +
Sbjct: 84  AEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKE 143

Query: 61  NVYAASVEFRLLRQHGYNVSQ 81
           N+YA S+EFRLLRQHGY VSQ
Sbjct: 144 NLYATSLEFRLLRQHGYPVSQ 164





Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1 Back     alignment and function description
>sp|Q5SBP4|AZIS_OCIBA Alpha-zingiberene synthase OS=Ocimum basilicum GN=ZIS PE=1 SV=1 Back     alignment and function description
>sp|Q9ZUH4|TPSA_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|O81193|SSS_SALOF (+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1 Back     alignment and function description
>sp|Q9SPN0|LLOS1_ARTAN R-linalool synthase QH1, chloroplastic (Fragment) OS=Artemisia annua GN=QH1 PE=1 SV=1 Back     alignment and function description
>sp|B5A434|MTPS1_SANAL (+)-alpha-terpineol synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query81
209446863 607 limonene synthase [Poncirus trifoliata] 1.0 0.133 0.814 1e-30
21435708 606 (+)-limonene synthase 2 [Citrus limon] 1.0 0.133 0.802 1e-29
49659437 608 d-limonene synthase [Citrus unshiu] 1.0 0.133 0.790 2e-29
49659435 606 d-limonene synthase [Citrus unshiu] 0.987 0.132 0.775 3e-28
322424201 607 limonene synthase [Murraya paniculata] 0.975 0.130 0.710 6e-25
359495034 596 PREDICTED: LOW QUALITY PROTEIN: myrcene 0.987 0.134 0.612 7e-22
225465911 593 PREDICTED: myrcene synthase, chloroplast 0.987 0.134 0.617 3e-21
41017756 606 RecName: Full=(R)-limonene synthase 1; A 1.0 0.133 0.765 1e-20
147773919 605 hypothetical protein VITISV_016813 [Viti 0.987 0.132 0.604 1e-20
147843306 604 hypothetical protein VITISV_017009 [Viti 0.987 0.132 0.604 2e-20
>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata] Back     alignment and taxonomy information
 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/81 (81%), Positives = 71/81 (87%)

Query: 1   AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNK 60
           AEELKGKVKT I+  TEPLDQLE IDNLQRLGLAYHF+TEIRNILH IYNNNKD  WR +
Sbjct: 84  AEELKGKVKTAIEDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNIYNNNKDYIWRKE 143

Query: 61  NVYAASVEFRLLRQHGYNVSQ 81
           N+YA S+EFRLLRQHGY VSQ
Sbjct: 144 NLYATSLEFRLLRQHGYPVSQ 164




Source: Poncirus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon] Back     alignment and taxonomy information
>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata] Back     alignment and taxonomy information
>gi|359495034|ref|XP_003634902.1| PREDICTED: LOW QUALITY PROTEIN: myrcene synthase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465911|ref|XP_002267159.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|147773919|emb|CAN60797.1| hypothetical protein VITISV_016813 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147843306|emb|CAN82665.1| hypothetical protein VITISV_017009 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query81
UNIPROTKB|J7LQ09 542 J7LQ09 "Trans-alpha-bergamoten 1.0 0.149 0.458 1.2e-13
UNIPROTKB|B3TPQ7 592 B3TPQ7 "Alpha-terpineol syntha 0.987 0.135 0.45 4.4e-11
TAIR|locus:2047510 591 TPS10 "terpene synthase 10" [A 0.950 0.130 0.455 9.2e-11
UNIPROTKB|Q8H2B4 606 Q8H2B4 "R-linalool synthase, c 0.987 0.132 0.469 9.5e-11
UNIPROTKB|J7LP58 564 J7LP58 "Alpha-copaene/delta-ca 0.975 0.140 0.425 2.9e-10
UNIPROTKB|J7LH11 546 J7LH11 "(+)-epi-alpha-bisabolo 0.987 0.146 0.402 7.5e-10
UNIPROTKB|Q49SP4 545 Q49SP4 "Germacrene D synthase 0.975 0.144 0.412 2.6e-09
UNIPROTKB|B3TPQ6 550 B3TPQ6 "Beta-cubebene synthase 0.975 0.143 0.405 2.6e-09
TAIR|locus:2086004 598 AT3G25810 [Arabidopsis thalian 0.962 0.130 0.421 3.8e-09
TAIR|locus:2829283 600 TPS-CIN ""terpene synthase-lik 0.962 0.13 0.414 4.9e-09
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
 Score = 186 (70.5 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 39/85 (45%), Positives = 56/85 (65%)

Query:     1 AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXX----X 56
             A++LK +VK  IK   + LDQL+ IDN+QRLG+++HF+ EI+ +L  IY           
Sbjct:    35 ADKLKWQVKVIIKETKQRLDQLDLIDNIQRLGISHHFRDEIQRVLQNIYEKMRVECPDRM 94

Query:    57 XXXXXVYAASVEFRLLRQHGYNVSQ 81
                  +Y+ S++FRLLRQHGY+VSQ
Sbjct:    95 LMEKDLYSTSLQFRLLRQHGYHVSQ 119




GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA
GO:1901940 "(-)-exo-alpha-bergamotene biosynthetic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H2B4 Q8H2B4 "R-linalool synthase, chloroplastic" [Mentha aquatica (taxid:190902)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query81
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-32
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 5e-27
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 3e-08
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-07
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
 Score =  110 bits (277), Expect = 1e-32
 Identities = 38/82 (46%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 1   AEELKGKVKTTIKYAT-EPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRN 59
            E LK +V+  +  +  + L+QLE ID LQRLG++YHF+ EI+ IL  IY N  D++   
Sbjct: 23  LESLKEEVRKMLPSSYPDLLEQLELIDALQRLGISYHFEKEIKEILDQIYRNWDDNDEEE 82

Query: 60  KNVYAASVEFRLLRQHGYNVSQ 81
            ++Y  ++ FRLLRQHGY+VS 
Sbjct: 83  DDLYTTALAFRLLRQHGYDVSS 104


It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 177

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 81
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 99.97
PLN02279 784 ent-kaur-16-ene synthase 99.87
PLN02592 800 ent-copalyl diphosphate synthase 99.85
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
Probab=100.00  E-value=7.4e-36  Score=207.48  Aligned_cols=81  Identities=49%  Similarity=0.854  Sum_probs=68.8

Q ss_pred             ChHHHHHHHHHHHhhc-ChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHhhCCCCC
Q 042821            1 AEELKGKVKTTIKYAT-EPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNKNVYAASVEFRLLRQHGYNV   79 (81)
Q Consensus         1 ~e~LkeeVk~ml~~~~-~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~dL~~~aL~FRLLRq~Gy~V   79 (81)
                      +++||++||.|+.... ++.++|+|||+||||||+|||++||+++|+++|+.+........|||+|||+|||||||||+|
T Consensus        28 ~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~V  107 (183)
T PF01397_consen   28 AEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQHGYYV  107 (183)
T ss_dssp             HHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHHHcCCcc
Confidence            3789999999998754 799999999999999999999999999999999987764322259999999999999999999


Q ss_pred             CC
Q 042821           80 SQ   81 (81)
Q Consensus        80 S~   81 (81)
                      ||
T Consensus       108 S~  109 (183)
T PF01397_consen  108 SS  109 (183)
T ss_dssp             -G
T ss_pred             cH
Confidence            97



It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query81
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 2e-11
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-09
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 4e-09
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 6e-09
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-09
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-09
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 6e-09
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-09
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 6e-09
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 6e-09
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-08
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-08
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-08
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 3e-07
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 1e-04
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 2e-04
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 5e-04
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure

Iteration: 1

Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats. Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 4/85 (4%) Query: 1 AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYXXXXXXX---- 56 A EL VK ++ T+ + QLE ID+LQR+GL+ HFQ E + IL IY Sbjct: 33 ASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFP 92 Query: 57 XXXXXVYAASVEFRLLRQHGYNVSQ 81 +Y+ S+ FRLLR+HG+ V+Q Sbjct: 93 KEERDLYSTSLAFRLLREHGFQVAQ 117
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query81
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 2e-20
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 6e-20
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 2e-18
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 3e-18
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 1e-17
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 3e-17
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 8e-17
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 4e-16
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 4e-16
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 3e-14
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
 Score = 82.5 bits (203), Expect = 2e-20
 Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 1   AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDNWRNK 60
           A  +  +VK  ++   + + +LE ID+L+RLG++ HF+ EI  IL+  Y  N + +   +
Sbjct: 66  AAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEID--ER 123

Query: 61  NVYAASVEFRLLRQHGYNVSQ 81
           ++Y+ ++ FRLLRQ+ ++VSQ
Sbjct: 124 DLYSTALRFRLLRQYDFSVSQ 144


>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query81
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 99.97
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 99.97
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 99.97
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 99.97
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 99.97
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 99.97
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 99.9
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 99.89
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 99.88
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 99.88
1pd3_A58 Nonstructural protein NS2; influenza virus A, NEP/ 86.91
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
Probab=99.97  E-value=1.7e-31  Score=207.14  Aligned_cols=81  Identities=43%  Similarity=0.718  Sum_probs=71.7

Q ss_pred             ChHHHHHHHHHHHhhcChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCCCCC---CC-CCCHHHHHHHHHHHhhCC
Q 042821            1 AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNKDDN---WR-NKNVYAASVEFRLLRQHG   76 (81)
Q Consensus         1 ~e~LkeeVk~ml~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~---~~-~~dL~~~aL~FRLLRq~G   76 (81)
                      +++||++||+|+.+..++.++|+|||+||||||+|||++||+++|+.+|+.+....   .. ..|||+|||+||||||||
T Consensus        33 ~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hG  112 (543)
T 2ong_A           33 ASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHG  112 (543)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC
Confidence            36899999999987678999999999999999999999999999999998764311   11 369999999999999999


Q ss_pred             CCCCC
Q 042821           77 YNVSQ   81 (81)
Q Consensus        77 y~VS~   81 (81)
                      |+|||
T Consensus       113 y~vs~  117 (543)
T 2ong_A          113 FQVAQ  117 (543)
T ss_dssp             CCCCG
T ss_pred             CCccH
Confidence            99996



>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 81
d1n1ba1 207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 2e-26
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 6e-24
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]
 Score = 93.8 bits (233), Expect = 2e-26
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 1   AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNN---KDDNW 57
             EL  +V+  +K   EP+ QLE I +L+ LGL+  FQ EI+ IL  IYN +    ++  
Sbjct: 23  KAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEV 82

Query: 58  RNKNVYAASVEFRLLRQHGYNVSQ 81
              ++Y  ++ FRLLRQHG+N+SQ
Sbjct: 83  EKMDLYFTALGFRLLRQHGFNISQ 106


>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query81
d1n1ba1 207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1pd3a_54 Nonstructural protein ns2, Nep, M1-binding domain 88.48
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]
Probab=100.00  E-value=5.5e-36  Score=208.98  Aligned_cols=81  Identities=44%  Similarity=0.700  Sum_probs=71.1

Q ss_pred             ChHHHHHHHHHHHhhcChhhHHHHHHHHHHhccccchHHHHHHHHHHHhhcCC--C-CCCCCCCHHHHHHHHHHHhhCCC
Q 042821            1 AEELKGKVKTTIKYATEPLDQLEQIDNLQRLGLAYHFQTEIRNILHGIYNNNK--D-DNWRNKNVYAASVEFRLLRQHGY   77 (81)
Q Consensus         1 ~e~LkeeVk~ml~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~--~-~~~~~~dL~~~aL~FRLLRq~Gy   77 (81)
                      +++||++||+||.+.+++.++|+|||+||||||+|||++||+++|++||+...  . ......|||+|||+|||||||||
T Consensus        23 ~e~Lkeevr~ml~~~~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy  102 (207)
T d1n1ba1          23 KAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGF  102 (207)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhccccccccccHHHHHHHHHHHHHcCC
Confidence            37899999999988889999999999999999999999999999999997521  1 11122599999999999999999


Q ss_pred             CCCC
Q 042821           78 NVSQ   81 (81)
Q Consensus        78 ~VS~   81 (81)
                      +|||
T Consensus       103 ~VS~  106 (207)
T d1n1ba1         103 NISQ  106 (207)
T ss_dssp             CCCG
T ss_pred             CCCH
Confidence            9997



>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]} Back     information, alignment and structure