Citrus Sinensis ID: 042906

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEE
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHcccccccccHHHHHHHcccHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MDQELLEVLRNGDENKIKQLALRQNIfstsspggntvLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRqknlmdetpLHIAARIGNRAIVSEIVKYvpavnqagplpvleSLFRMrdiegntplhnavTNQHKRVIRILVekdsvpssyinkayqtpLSIAIDArlndsacfiidkspeslnttrlpdelTLLHFVVMRQNYDIMVKILGTNKELIDRLdwhqrnplhyaaaSGNVKMAQRLLEESKQLAYkrdcngetplhlaAENGKLKVLKLLINKypdaieirdnsdRSILHVAAKHGNWNIVSFILKSPEMENLINLvdrngntplhlAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEE
Flexible Loop (DISEMBL)
MDQELLEVLRNGDENKIKQLALRQNIFstsspggntVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNtplhnavtnqhKRVIRILVekdsvpssyiNKAYQTPLSIAIDARLNDSACFIIDkspeslnttrlpdELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLhlaaengklKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSvniraknrsarnniALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEelqqkrqvskee
Low Complexity Region (SEG)
MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEE
Disordered region (IsUnstruct)
*******************LALRQNIFS****GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILV************AYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYA*******************
Disordered Region (DISOPRED)
MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAE************
Disordered Region (DISEMBL)
MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALS**************
Disordered Region (DISPRO)
MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKT***KRALSAEELQQKRQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
P57078	832	Receptor-interacting seri	no	no	0.698	0.348	0.296	3e-20
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.706	0.155	0.289	5e-20
Q9ERK0	786	Receptor-interacting seri	yes	no	0.696	0.367	0.290	9e-20
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.6	0.475	0.294	2e-19
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.768	0.270	0.276	4e-19
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.761	0.072	0.268	1e-18
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.814	0.172	0.263	3e-18
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.701	0.156	0.284	4e-18
Q54KA7	986	Ankyrin repeat, PH and SE	yes	no	0.763	0.321	0.274	2e-17
Q71S21	1002	Inversin-B OS=Xenopus lae	N/A	no	0.689	0.285	0.257	4e-17

>sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 157/330 (47%), Gaps = 40/330 (12%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDE---TPLHIAARIGNRA 90
           G+T LHMAV  R + V+  +L ++  +            N  DE   T LH AA+ G+ +
Sbjct: 519 GSTPLHMAVERRVRGVVELLLARKISV------------NAKDEDQWTALHFAAQNGDES 566

Query: 91  IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
               +++   +VN+              D EG TP+H A  +  + ++RIL+ +  V  S
Sbjct: 567 STRLLLEKNASVNEV-------------DFEGRTPMHVACQHGQENIVRILLRR-GVDVS 612

Query: 151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKI 210
              K    PL  A           +  +   S+N   L D  T LH    R +Y +  +I
Sbjct: 613 LQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTL-DGRTPLHLAAQRGHYRV-ARI 670

Query: 211 LGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE-SKQLAYKRDCNGETPLHLAAEN 269
           L      ++      + PLH AA +G+   A+ LL   + + A   D  G T LHLAA N
Sbjct: 671 LIDLCSDVNVCSLLAQTPLHVAAETGHTSTARLLLHRGAGKEAMTSD--GYTALHLAARN 728

Query: 270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNG 329
           G L  +KLL+ +  D +  R   +++ LH+AA HG+  +V  ++ +    ++I+L D  G
Sbjct: 729 GHLATVKLLVEEKADVLA-RGPLNQTALHLAAAHGHSEVVEELVSA----DVIDLFDEQG 783

Query: 330 NTPLHLAAMGLHSDVVFTLSRHKS-VNIRA 358
            + LHLAA G H+  V TL RH + +N+++
Sbjct: 784 LSALHLAAQGRHAQTVETLLRHGAHINLQS 813

Involved in stratified epithelial development. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 150/325 (46%), Gaps = 32/325 (9%)

Query: 36  TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEI 95
           T LHMA R  + +V + +L+ +         + +  K   D+TPLH AARIG+  +V  +
Sbjct: 439 TPLHMAARAGHTEVAKYLLQNK---------AKVNAKAKDDQTPLHCAARIGHTNMVKLL 489

Query: 96  VKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA 155
           ++     N A P         +    G+TPLH A    H   +  L+EK++  +    K 
Sbjct: 490 LE-----NNANP--------NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 536

Query: 156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNK 215
           + TPL +A        A  ++++        +  + LT LH  V   N DI VK+L    
Sbjct: 537 F-TPLHVAAKYGKVRVAELLLERDAHPNAAGK--NGLTPLHVAVHHNNLDI-VKLLLPRG 592

Query: 216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVL 275
                  W+   PLH AA    V++A+ LL+     A      G TPLHLAA+ G  +++
Sbjct: 593 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMV 651

Query: 276 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHL 335
            LL++K  +   + + S  + LH+ A+ G+  +   ++K   M   ++   R G TPLH+
Sbjct: 652 ALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHV 707

Query: 336 AA-MGLHSDVVFTLSRHKSVNIRAK 359
           A+  G    V F L     VN + K
Sbjct: 708 ASHYGNIKLVKFLLQHQADVNAKTK 732

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 153/331 (46%), Gaps = 42/331 (12%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDE---TPLHIAARIGNRA 90
           G+T LHMAV  + + ++  +L ++  +            N  DE   T LH AA+ G+ A
Sbjct: 473 GSTPLHMAVERKGRGIVELLLARKTSV------------NAKDEDQWTALHFAAQNGDEA 520

Query: 91  IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
               +++   +VN+              D EG TP+H A  +  + ++R L+ +  V   
Sbjct: 521 STRLLLEKNASVNEV-------------DFEGRTPMHVACQHGQENIVRTLLRR-GVDVG 566

Query: 151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKI 210
              K    PL  A           +  +   S+N   L D  T LH    R +Y +  +I
Sbjct: 567 LQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTL-DGRTPLHLAAQRGHYRV-ARI 624

Query: 211 LGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR--DCNGETPLHLAAE 268
           L      ++      + PLH AA +G+   A+ LL      A K      G T LHLAA+
Sbjct: 625 LIDLCSDVNICSLQAQTPLHVAAETGHTSTARLLLHRG---AGKEALTSEGYTALHLAAQ 681

Query: 269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRN 328
           NG L  +KLLI +  D +  R   +++ LH+AA  G+  +V  ++ +    +LI+L D  
Sbjct: 682 NGHLATVKLLIEEKADVM-ARGPLNQTALHLAAARGHSEVVEELVSA----DLIDLSDEQ 736

Query: 329 GNTPLHLAAMGLHSDVVFTLSRHKS-VNIRA 358
           G + LHLAA G HS  V TL +H + +N+++
Sbjct: 737 GLSALHLAAQGRHSQTVETLLKHGAHINLQS 767

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 9/258 (3%)

Query: 123 NTPLHNAV-TNQHKRVIRILVEKDSVPSSYI----NKAYQTPLSIAIDARLNDSACFIID 177
           +TPLH AV   +   ++ ++ E D V    +    N++ +T L +A +    D    ++ 
Sbjct: 18  DTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKILMK 77

Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
            S   L  T+  +     H      N  ++  ++  N EL    D  +   LH AA+ G+
Sbjct: 78  HSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGH 137

Query: 238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSIL 297
            ++   LL++   LA     NG+T LH AA NG   ++K LI K    +   D   ++ L
Sbjct: 138 GEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTAL 197

Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR 357
           H+A K  N  IV  ++++    +LIN  D  GNTPLH+A     +++V T+ ++  V+  
Sbjct: 198 HMAVKGQNTEIVDVLMEAD--GSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRV 255

Query: 358 AKNRSARNNIALEIAEIT 375
           A N+S     AL+IAE T
Sbjct: 256 AVNKSGET--ALDIAEKT 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 96.3 bits (238), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 165/355 (46%), Gaps = 36/355 (10%)

Query: 10  RNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL 69
           +NG+ +  K LA      +  +  G TVLH AV+  N  +++ ++  Q         + +
Sbjct: 647 KNGNLDLAKLLAKNGADVNAKTDNGETVLHYAVKSGNLHLVKWLIENQ---------ANI 697

Query: 70  RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA 129
             K    ET LH A    N  +V  ++ Y   VN              +   G T LH A
Sbjct: 698 HAKTDNGETVLHYAVSFNNSDLVYLLIAYGADVNA-------------KTDNGLTALHYA 744

Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLP 189
           V + +  ++ +L+   +  ++  N   +T L  A+D    D    +I    +     +  
Sbjct: 745 VYDGNLDLVSLLISHGADVNAKTNSG-ETILYSAVDYGSPDLVYLLIAYGADV--NAKTD 801

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           +  T+LH+ V   N D +V +L  N   ++      +  LH+AA SGN+ +   L++   
Sbjct: 802 NGETVLHYAVESGNLD-LVSLLIHNGANVNN----AKTILHFAAKSGNLNLVNWLIKNKA 856

Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
            +  K + +GET LH AAE+G L ++  LI    D I  + NS  +ILH AAK GN N+V
Sbjct: 857 DIHAKTN-SGETILHFAAESGNLNLVNWLIKNKAD-IHAKTNSGETILHFAAKSGNLNLV 914

Query: 310 SFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSAR 364
           ++++K+      I+    +G T LH AA   + ++V  L ++K+ +I AK  S  
Sbjct: 915 NWLIKNKAD---IHAKTNSGETILHFAAKSGNLNLVNWLIKNKA-DIHAKTNSGE 965

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 160/361 (44%), Gaps = 45/361 (12%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G T LHMA R    +V+R +++           + +  K   D+TPLHI+AR+G   IV 
Sbjct: 466 GETALHMAARSGQAEVVRYLVQDG---------AQVEAKAKDDQTPLHISARLGKADIVQ 516

Query: 94  EIVKYVPAVNQA---GPLPV-LESLFRMRDI----------------EGNTPLHNAVTNQ 133
           ++++   + N A   G  P+ L +     D+                +G TPLH A    
Sbjct: 517 QLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYG 576

Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELT 193
              V  +L++K + P +   K+  TPL +A        A  ++D+        +  +  T
Sbjct: 577 KLEVANLLLQKSASPDA-AGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAK--NGYT 633

Query: 194 LLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL 251
            LH    +   DI   +L  G +   + R        +H AA  G+V M   LL  +  +
Sbjct: 634 PLHIAAKKNQMDIATTLLEYGADANAVTRQGIAS---VHLAAQEGHVDMVSLLLGRNANV 690

Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF 311
                 +G TPLHLAA+  ++ V ++L+N+    ++ +     + LHV   +GN  IV+F
Sbjct: 691 NLSNK-SGLTPLHLAAQEDRVNVAEVLVNQGAH-VDAQTKMGYTPLHVGCHYGNIKIVNF 748

Query: 312 ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
           +L   +    +N   +NG TPLH AA   H+ ++  L ++   N      +   N AL I
Sbjct: 749 LL---QHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQN---NASPNELTVNGNTALGI 802

Query: 372 A 372
           A
Sbjct: 803 A 803

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 168/383 (43%), Gaps = 45/383 (11%)

Query: 12  GDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ 71
           G  N + QL       +T++  G T LHMA R    +V+R +++           + +  
Sbjct: 427 GHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDG---------AQVEA 477

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQA---GPLPV-LESLFRMRDI------- 120
           K   D+TPLHI+AR+G   IV ++++   + N A   G  P+ L +     D+       
Sbjct: 478 KAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDH 537

Query: 121 ---------EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
                    +G TPLH A       V  +L++K + P +   K+  TPL +A        
Sbjct: 538 GASLSITTKKGFTPLHVAAKYGKLEVASLLLQKSASPDA-AGKSGLTPLHVAAHYDNQKV 596

Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
           A  ++D+        +  +  T LH    +   DI   +L  G +   + R        +
Sbjct: 597 ALLLLDQGASPHAAAK--NGYTPLHIAAKKNQMDIATSLLEYGADANAVTRQGIAS---V 651

Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AA  G+V M   LL  +  +      +G TPLHLAA+  ++ V ++L+N+    ++ +
Sbjct: 652 HLAAQEGHVDMVSLLLSRNANVNLSNK-SGLTPLHLAAQEDRVNVAEVLVNQGAH-VDAQ 709

Query: 290 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
                + LHV   +GN  IV+F+L   +    +N   +NG T LH AA   H+ ++  L 
Sbjct: 710 TKMGYTPLHVGCHYGNIKIVNFLL---QHSAKVNAKTKNGYTALHQAAQQGHTHIINVLL 766

Query: 350 RHKSVNIRAKNRSARNNIALEIA 372
           ++   N      +   N AL IA
Sbjct: 767 QN---NASPNELTVNGNTALAIA 786

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 146/327 (44%), Gaps = 36/327 (11%)

Query: 36  TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEI 95
           T LHMA R  + +V + +L+ +              K   D+TPLH AARIG+  +V  +
Sbjct: 435 TPLHMAARAGHTEVAKYLLQNKAKAN---------AKAKDDQTPLHCAARIGHTGMVKLL 485

Query: 96  VKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA 155
           ++     N A P         +    G+TPLH A    H      L+EK++  +    K 
Sbjct: 486 LE-----NGASP--------NLATTAGHTPLHTAAREGHVDTALALLEKEASQACMTKKG 532

Query: 156 YQTPLSIAIDARLNDSACFII--DKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGT 213
           + TPL +A        A  ++  D  P +       + LT LH  V   N DI VK+L  
Sbjct: 533 F-TPLHVAAKYGKVRLAELLLEHDAHPNAAGK----NGLTPLHVAVHHNNLDI-VKLLLP 586

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK 273
                    W+   PLH AA    +++A+ LL+     A      G TPLHLAA+ G  +
Sbjct: 587 RGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHTE 645

Query: 274 VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPL 333
           ++ LL++K  +   + + S  + LH+ ++ G+  +   ++K       ++   R G TPL
Sbjct: 646 MVALLLSKQANG-NLGNKSGLTPLHLVSQEGHVPVADVLIKHGVT---VDATTRMGYTPL 701

Query: 334 HLAA-MGLHSDVVFTLSRHKSVNIRAK 359
           H+A+  G    V F L     VN + K
Sbjct: 702 HVASHYGNIKLVKFLLQHQADVNAKTK 728

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 162/361 (44%), Gaps = 44/361 (12%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDE---TPLHIAARIGNRA 90
           G T LH A    N Q +  +++  + +            N +D    TPLH A+  G+ +
Sbjct: 169 GETPLHHASAGGNPQCVELLIKADSKV------------NAVDNDCITPLHQASFSGHSS 216

Query: 91  IVSEIVKYVPAVN--------------QAGPLPVLESLFR------MRDIEGNTPLHNAV 130
            VS ++K    V+               AG +  +E L R        DIEG TPLH+  
Sbjct: 217 CVSLLLKKGAKVDPRDIHGISPLHNAASAGYVDCVEQLVRNGENINCVDIEGVTPLHHTC 276

Query: 131 TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPD 190
            N + ++ + L+E      + +++  +TPL  A      +   +++   P  ++  R   
Sbjct: 277 FNGNLQLTKRLIEL-GAKINMVDEMGETPLHKAAFNGHKEVCEYLLYLDPTMIDC-RDSR 334

Query: 191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQ 250
           + T LH        D MV +L   K  I+  D     PLH A+ +G+   A+ L+++   
Sbjct: 335 QSTSLHLAAFNGLLD-MVDLLIRYKAQINIKDEEGATPLHKASFNGHSSCAKLLVDKGAP 393

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVS 310
           +    D  G TPLH AA NG+ K L  LI    + +E++D+   + LH AA +G+ +   
Sbjct: 394 ICI-VDSQGATPLHKAAFNGRSKCLATLIRSGAE-LEVKDSQGGTPLHNAAYNGHSDCCR 451

Query: 311 FILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALE 370
            +LK       +N VD + +TPLHLA+     D V  L + K+  I AKN + +  +   
Sbjct: 452 ILLKKGAN---VNAVDTHSSTPLHLASAAGARDTVDVLIQFKA-RIDAKNFAGKTPLVYA 507

Query: 371 I 371
           I
Sbjct: 508 I 508

Dictyostelium discoideum (taxid: 44689)

>sp|Q71S21|INVSB_XENLA Inversin-B OS=Xenopus laevis GN=invs-b PE=1 SV=1

 Score = 89.4 bits (220), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 157/319 (49%), Gaps = 33/319 (10%)

Query: 36  TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEI 95
           T LH +  +   Q +R ++R  + I +          +   + PLH AA  G++    E 
Sbjct: 147 TALHWSAYYNRPQHVRLLVRHGSNIGI---------PDTEGKIPLHWAA--GHKD--PEA 193

Query: 96  VKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA 155
              V  + +A P    ESL   +D EG TPLH AV + ++ V+R+L        +  +  
Sbjct: 194 ALTVRCLFEAAPT---ESLLNWQDYEGRTPLHLAVGDGNQEVVRLLTSYRGCNVAPYDNL 250

Query: 156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE---LTLLHFVVMRQNYDIMVKILG 212
           ++TPL  A        A  +++++    N+  +P +    T LH+   + N    V++L 
Sbjct: 251 FRTPLHWAALLGHTPIAHLLLERN----NSPNIPSDSQGATPLHYAA-QGNCPDTVRVLL 305

Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR-DCNGETPLHLAAENGK 271
           ++  + D  D   R  L +AA  G+ ++ + +LE + +L   R D  G T LH A+ +G+
Sbjct: 306 SHPSVRDEADLEGRTALMWAAGKGSDEVVRTMLELNPKLEVNRTDKYGGTALHAASLSGQ 365

Query: 272 LKVLKLLINK--YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNG 329
           +  +++L+      DA+++  ++    L  A + G+  +++ ++K       ++LVD++G
Sbjct: 366 ITTVRILLENRAQADAVDVMKHTP---LFRACEMGHREVIATLIKGGAK---VHLVDKDG 419

Query: 330 NTPLHLAAMGLHSDVVFTL 348
            +PLH AA+G +++V   L
Sbjct: 420 RSPLHWAALGGNANVCQIL 438

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling. Plays a central role in convergent extension movements in gastrulating embryos, a processus regulated by Wnt signaling.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
147820412	624	hypothetical protein VITISV_004974 [Viti	0.831	0.552	0.368	4e-45
302143222	617	unnamed protein product [Vitis vinifera]	0.831	0.559	0.368	5e-45
224117424	381	predicted protein [Populus trichocarpa]	0.843	0.918	0.336	1e-42
255547566	581	ankyrin repeat-containing protein, putat	0.891	0.636	0.305	2e-42
224109440	577	predicted protein [Populus trichocarpa]	0.843	0.606	0.336	3e-42
224117420	577	predicted protein [Populus trichocarpa]	0.843	0.606	0.336	1e-41
224117416	451	predicted protein [Populus trichocarpa]	0.845	0.778	0.329	3e-41
359485365	781	PREDICTED: ankyrin repeat-containing pro	0.848	0.450	0.326	2e-39
225446910	777	PREDICTED: ankyrin repeat-containing pro	0.857	0.458	0.328	4e-39
297739103	647	unnamed protein product [Vitis vinifera]	0.857	0.550	0.328	4e-39

>gi|147820412|emb|CAN63354.1| hypothetical protein VITISV_004974 [Vitis vinifera]

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 203/364 (55%), Gaps = 19/364 (5%)

Query: 13  DENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQK 72
           D ++I  L L  ++   SS   NT LH+A R  N++++  +L +          SLL + 
Sbjct: 26  DHDEISNLNL--HVGFDSSHRKNTALHIAARVGNKKMVEALLSEGT------PASLLTE- 76

Query: 73  NLMDETPLHIAARIGNRAIVSEIVKYVPAVN--QAGPLPVLESLFRMRDIEGNTPLHNAV 130
           N   ETPLHIAAR G+  +V  ++ +       +AG +   + + RMR++EGNTPLH AV
Sbjct: 77  NSKHETPLHIAARSGHVHVVKFLIDWATQSTDVEAGGI---QQVLRMRNMEGNTPLHEAV 133

Query: 131 TNQHKRVIRILVEK-DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKS-PESLNTTRL 188
            N H   + +LVE  DS     +N A ++PL +A+D R ++    I+  S P SL   R 
Sbjct: 134 RNGHHSTVLVLVEANDSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSL-LHRS 192

Query: 189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES 248
            D  T+LH  ++R +   M  I+    EL++  D   R+PLHYAAASG + +   LL+  
Sbjct: 193 SDGQTILHRAILRADLKTMKIIIQHMPELVNEKDSCGRSPLHYAAASGALALVDHLLQLK 252

Query: 249 KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 308
                  D N  TP H+AAENG L VLKL + +    +E+ +N  ++ILHVAA++G+  +
Sbjct: 253 PSNGSFLDNNLATPAHMAAENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQNGHLKV 312

Query: 309 VSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIA 368
           V +I     + +L+N  D +GNTPLHLAA  LHS +V TL +  +++  A N+  +    
Sbjct: 313 VRYIQNMFMVNDLLNETDEDGNTPLHLAAAKLHSSIVSTLVQTGNMDTTAINK--KGETV 370

Query: 369 LEIA 372
           L+IA
Sbjct: 371 LDIA 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143222|emb|CBI20517.3| unnamed protein product [Vitis vinifera]

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 201/364 (55%), Gaps = 19/364 (5%)

Query: 13  DENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQK 72
           D ++I  L L       SS   NT LH+A R  N++++  +L +          SLL + 
Sbjct: 26  DHDEISNLNLHVGF--DSSHRKNTALHIAARVGNKKMVEALLSEGT------PASLLTE- 76

Query: 73  NLMDETPLHIAARIGNRAIVSEIVKYVPAVN--QAGPLPVLESLFRMRDIEGNTPLHNAV 130
           N   ETPLHIAAR G+  +V  ++ +       +AG +   + + RMR++EGNTPLH AV
Sbjct: 77  NSKHETPLHIAARSGHVHVVKFLIDWATQSTDVEAGGI---QQVLRMRNMEGNTPLHEAV 133

Query: 131 TNQHKRVIRILVEK-DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKS-PESLNTTRL 188
            N H   + +LVE  DS     +N A ++PL +A+D R ++    I+  S P SL   R 
Sbjct: 134 RNGHHSTVLVLVEANDSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSL-LHRS 192

Query: 189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES 248
            D  T+LH  ++R +   M  I+    EL++  D   R+PLHYAAASG + +   LL+  
Sbjct: 193 SDGQTILHRAILRADLKTMKIIIQHMPELVNEKDSCGRSPLHYAAASGALALVDHLLQLK 252

Query: 249 KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 308
                  D N  TP H+AAENG L VLKL + +    +E+ +N  ++ILHVAA++G+  +
Sbjct: 253 PSNGSFLDNNLATPAHMAAENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQNGHLKV 312

Query: 309 VSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIA 368
           V +I     + +L+N  D +GNTPLHLAA  LHS +V TL +  +++  A N+  +    
Sbjct: 313 VRYIQNMFMVNDLLNETDEDGNTPLHLAAAKLHSSIVSTLVQTGNMDTTAINK--KGETV 370

Query: 369 LEIA 372
           L+IA
Sbjct: 371 LDIA 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117424|ref|XP_002317571.1| predicted protein [Populus trichocarpa] gi|222860636|gb|EEE98183.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 203/374 (54%), Gaps = 24/374 (6%)

Query: 1   MDQELLEVLRNGDENKIKQLALRQN--IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQN 58
           MD  L  V ++G+   + QL L +N  + +  +P GNT LH+AV+F ++ V+ EI  +  
Sbjct: 1   MDSRLYRVAKSGNVYILLQL-LNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCR 59

Query: 59  FIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAV-------NQAGPLPVL 111
                   SLL + N   ++PLH+AAR G+ +IV  +VK + +         + G   +L
Sbjct: 60  --------SLLTRPNSSGDSPLHVAARCGHFSIVDFLVKEILSAKRISTENGKTGKFDIL 111

Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
               R  + E NT LH AV N +  V+++L+  D+  + + N A ++PL +A      D 
Sbjct: 112 ----RQGNKENNTVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDV 167

Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
              I+  +P S +     +  T LH  V+ ++ DIM  +L     LI   D H R  L+Y
Sbjct: 168 LNQILISNPASAHGG--SEGHTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALYY 225

Query: 232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
           AA+ G+ +  +RLLE  +  AY  D NG +PLH+AA NG   V++ +I+  PD+ E+ D 
Sbjct: 226 AASLGDRRAVERLLEFDECTAYVLDKNGHSPLHVAARNGHADVIERIIHYCPDSGELLDL 285

Query: 292 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           + RS+LH A   G  N+V  +++  E++ LIN  D  GNTPLHLAA+   + ++  L   
Sbjct: 286 NGRSVLHFAVLSGKVNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCLIWD 345

Query: 352 KSVNIRAKNRSARN 365
           + V+ RA+N + ++
Sbjct: 346 ERVDHRARNETGQS 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547566|ref|XP_002514840.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223545891|gb|EEF47394.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 205/389 (52%), Gaps = 19/389 (4%)

Query: 1   MDQELLEVLRNGDENKIKQLALR--QNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQN 58
           MD  L + + +GD N    L  +    +F  ++   NT+LH+A +    QV   ++    
Sbjct: 1   MDPSLYQAITSGDLNCFDNLIGKNASKLFQVTADQENTILHVAAKLETLQVAERVIG--- 57

Query: 59  FIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMR 118
                L  SLL + N   ++PLHIAAR+G   +   ++     +     + V + L RM+
Sbjct: 58  -----LCPSLLHKPNYNGDSPLHIAARLGRVRMCRLLINCADLLE----VEVEKELLRMQ 108

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
           +++ +T LH+AV N H   +R+L+++DS  +  INKA ++PL +A+D R  + +  I+  
Sbjct: 109 NLDHDTALHDAVRNGHFETVRLLIQQDSQLTRVINKAGESPLFLAVDRRSYEISQHILQA 168

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV 238
           +P ++ + +  + + +LH  ++R   D M +++          D     PLHYAA+SGN 
Sbjct: 169 AP-AVCSFKGRNSMNVLHAAIIRA--DFMHEVMRRCPSATFECDIGGWIPLHYAASSGNS 225

Query: 239 KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILH 298
           ++   LL     LA+ +D  G T +H++A+ G+  V++ LI   PD  E+ D+  R++LH
Sbjct: 226 EVINLLLHHDISLAHVKDQKGRTAVHISAKAGQADVIQKLIETCPDTFELLDDKGRTVLH 285

Query: 299 VAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA 358
            AAK G   ++  +LK+ +++ LIN  D NGNTP HLAA   H  ++  L+    V+  A
Sbjct: 286 YAAKKGRIGLLGILLKTLDLDYLINARDNNGNTPFHLAAFKRHFKILRRLADDGRVDKGA 345

Query: 359 KNRSARNNIALEIAEITRADGKEIQKHLT 387
            N +     AL+I E +      I+  +T
Sbjct: 346 MNNAGLT--ALDIVESSTLPKHHIKARIT 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109440|ref|XP_002333254.1| predicted protein [Populus trichocarpa] gi|222835818|gb|EEE74253.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 203/374 (54%), Gaps = 24/374 (6%)

Query: 1   MDQELLEVLRNGDENKIKQLALRQN--IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQN 58
           MD  L  V ++G+   + QL L +N  + +  +P GNT LH+AV+F ++ V+ EI  +  
Sbjct: 1   MDSRLYRVAKSGNVYILLQL-LNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCG 59

Query: 59  FIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAV-------NQAGPLPVL 111
                   SLL + N   ++PLH+AAR G+ +IV  +VK + A         + G   +L
Sbjct: 60  --------SLLTRPNSSGDSPLHVAARCGHFSIVDFLVKEILAAKRISTENGKTGKFDIL 111

Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
               R  + E NT LH AV N +  V+++L+  D+  + + N A ++PL +A      + 
Sbjct: 112 ----RQGNNENNTVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKNL 167

Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
              I+  +P S +     +  T LH  V+ ++ DIM  +L     LI   D H R  LH+
Sbjct: 168 LNQILISTPASAHGG--SEGQTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALHH 225

Query: 232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
           AA+ G+ +  +RLLE  +  AY  D NG +PLH+AA NG   V++ +I+  PD+ E+ D 
Sbjct: 226 AASLGDRRAVERLLEFDECTAYVLDKNGHSPLHVAASNGHADVIERIIHYCPDSGELLDL 285

Query: 292 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           + RS+LH A   G  N+V  +++  E++ LIN  D  GNTPLHLAA+   + ++  L   
Sbjct: 286 NGRSVLHFAVLSGKVNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCLIWD 345

Query: 352 KSVNIRAKNRSARN 365
           + V+ RA+N + ++
Sbjct: 346 ERVDHRARNETGQS 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117420|ref|XP_002317570.1| predicted protein [Populus trichocarpa] gi|222860635|gb|EEE98182.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 202/374 (54%), Gaps = 24/374 (6%)

Query: 1   MDQELLEVLRNGDENKIKQLALRQN--IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQN 58
           MD  L  V ++G+   + QL L +N  + +  +P GNT LH+AV+F ++ V+ EI  +  
Sbjct: 1   MDSRLYRVAKSGNVYILLQL-LNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCR 59

Query: 59  FIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAV-------NQAGPLPVL 111
                   SLL + N   ++PLH+AAR G+ +IV  +VK   +         + G   +L
Sbjct: 60  --------SLLTRPNSSGDSPLHVAARCGHFSIVDFLVKENLSAKRISTENGKTGKFDIL 111

Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
               R  + E NT LH AV N +  V+++L+  D+  + + N A ++PL +A      D 
Sbjct: 112 ----RQGNNENNTVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDI 167

Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
              I+  +P S +     +  T LH  V+ ++ DIM  +L     LI   D H R  LH+
Sbjct: 168 LNQILISTPASAHGG--SEGQTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALHH 225

Query: 232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
           AA+ G+ +  +RLLE  +  AY  D NG +PLH+AA NG   V++ +I+  PD+ E+ D 
Sbjct: 226 AASLGDRRAVERLLEFDECTAYVLDKNGHSPLHVAASNGHADVIERIIHYCPDSGELLDL 285

Query: 292 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           + RS+LH A   G  N+V  +++  E++ LIN  D  GNTPLHLAA+   + ++  L   
Sbjct: 286 NGRSVLHFAVLSGKVNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCLIWD 345

Query: 352 KSVNIRAKNRSARN 365
           + V+ RA+N + ++
Sbjct: 346 ERVDHRARNETGQS 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117416|ref|XP_002317569.1| predicted protein [Populus trichocarpa] gi|222860634|gb|EEE98181.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 201/373 (53%), Gaps = 22/373 (5%)

Query: 1   MDQELLEVLRNGDENKIKQLA-LRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNF 59
           MD  L  V+++G+   + QL   +  + +  +P GNT LH+AV+F ++ V+ EI  +   
Sbjct: 1   MDSRLYRVVKSGNVYILLQLLNEKPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCR- 59

Query: 60  IALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAV-------NQAGPLPVLE 112
                  SLL + N   ++PLH+AAR G+ +IV  +VK   +         + G   +L 
Sbjct: 60  -------SLLTRPNSSGDSPLHVAARCGHFSIVDFLVKENLSAKRISTENGKTGKFDIL- 111

Query: 113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSA 172
              R  + E NT LH AV N +  V+++L+  D+  + + N A ++PL +A      D  
Sbjct: 112 ---RQGNNENNTVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDIL 168

Query: 173 CFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYA 232
             I+  +P S +     +  T LH  V+ ++ DIM  +L     LI   D H R  LH+A
Sbjct: 169 NQILISTPASAHGG--SEGQTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALHHA 226

Query: 233 AASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS 292
           A+ G+ +  +RLLE  + +AY  D NG +PLH+AA NG   V++ +I+  PD+ E+ D +
Sbjct: 227 ASLGDRRAVERLLEFDECIAYVLDKNGHSPLHVAARNGHADVIERIIHYCPDSGELLDLN 286

Query: 293 DRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK 352
            RS+LH A      N+V  +++  E++ LIN  D  GNTPLHLAA+   + ++  L   +
Sbjct: 287 GRSVLHFAVLSAKVNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCLIWDE 346

Query: 353 SVNIRAKNRSARN 365
            V+ RA+N + ++
Sbjct: 347 RVDHRARNETGQS 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485365|ref|XP_003633264.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 200/383 (52%), Gaps = 31/383 (8%)

Query: 26  IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR 85
           I    SP  NT LH+A  F +  + + I+R+           L++ KN   +T LHIAAR
Sbjct: 226 ILCQVSPRKNTCLHIAASFGHHDLAKYIVRECP--------DLIKNKNSKGDTALHIAAR 277

Query: 86  IGNRAIVSEIVKYVPA-------VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR-- 136
             N + V  ++   P+       V +A P     SL  + + EGNT LH A+ N+ K+  
Sbjct: 278 KRNLSFVKIVMDSFPSGSGASQDVEKAEP-----SLLGIVNKEGNTVLHEALINRCKQEE 332

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
           V+ IL++ D   + Y NK  ++PL +A ++        +++    S    R+ +    +H
Sbjct: 333 VVEILIKADPQVAYYPNKEGKSPLYLAAESHY----FHVVEAIGNSEVEERMKNRDRKVH 388

Query: 197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD 256
             +M +N +++ KIL    +L+ + D   R PLH AA+ G ++  Q LL++S    Y+ D
Sbjct: 389 GAIMGKNKEMLEKILAM--KLVHQKDKDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQTD 446

Query: 257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP 316
            +G  P+H+A+  G + ++K L+    D+IE+      +ILHVAAK+G  N+V+F+LK  
Sbjct: 447 SDGFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGENILHVAAKYGKDNVVNFVLKEE 506

Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITR 376
            +EN IN  D  GNTPLHLA M  H  VV +L+  K V++   N   R   AL++  ++ 
Sbjct: 507 RLENFINEKDNGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVND--RGQTALDVV-LSV 563

Query: 377 ADGKEIQKHLTLKALKTAYAKRA 399
                  + L   ALK+A A+ A
Sbjct: 564 KHPTTFDQALIWTALKSAGARPA 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446910|ref|XP_002266647.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 197/383 (51%), Gaps = 27/383 (7%)

Query: 26  IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR 85
           I    SP  NT LH+A  F +  + + I+++           L++ KN   +T LHIAAR
Sbjct: 218 ILCQVSPRKNTCLHIAASFGHHDLAKYIVKECP--------DLIKNKNSKGDTALHIAAR 269

Query: 86  IGNRAIVSEIVKYVPA-------VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR-- 136
             N + V  ++   P+       V +A P     SL  + + EGNT LH A+ N+ K+  
Sbjct: 270 KRNLSFVKIVMDSCPSGSGASQDVEKAEP-----SLLGIVNKEGNTVLHEALINRCKQEE 324

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
           V+ IL++ D   + Y NK  ++PL +A ++        I +   E     R       +H
Sbjct: 325 VVEILIKTDPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKAKPAVH 384

Query: 197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD 256
             +M +N +++ KIL    +L+ + D   R PLH AA+ G ++  Q LL++S    Y+ D
Sbjct: 385 GAIMGKNKEMLEKILAM--KLVHQKDEDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQMD 442

Query: 257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP 316
            +G  P+H+A+  G + ++K L+    D+IE+     ++ILHVAAK+G  N+V+F+LK  
Sbjct: 443 SDGFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGQNILHVAAKYGKDNVVNFVLKEE 502

Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITR 376
            +EN IN  D+ GNTPLHLA M  H  VV +L+  K V++   N   R   AL I  +  
Sbjct: 503 RLENFINEKDKGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVND--RGQTALNIV-LPV 559

Query: 377 ADGKEIQKHLTLKALKTAYAKRA 399
                  + L   ALK+A A+ A
Sbjct: 560 KHPPTFHQALIWTALKSAGARPA 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739103|emb|CBI28754.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 197/383 (51%), Gaps = 27/383 (7%)

Query: 26  IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR 85
           I    SP  NT LH+A  F +  + + I+++           L++ KN   +T LHIAAR
Sbjct: 88  ILCQVSPRKNTCLHIAASFGHHDLAKYIVKECP--------DLIKNKNSKGDTALHIAAR 139

Query: 86  IGNRAIVSEIVKYVPA-------VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR-- 136
             N + V  ++   P+       V +A P     SL  + + EGNT LH A+ N+ K+  
Sbjct: 140 KRNLSFVKIVMDSCPSGSGASQDVEKAEP-----SLLGIVNKEGNTVLHEALINRCKQEE 194

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
           V+ IL++ D   + Y NK  ++PL +A ++        I +   E     R       +H
Sbjct: 195 VVEILIKTDPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKAKPAVH 254

Query: 197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD 256
             +M +N +++ KIL    +L+ + D   R PLH AA+ G ++  Q LL++S    Y+ D
Sbjct: 255 GAIMGKNKEMLEKILAM--KLVHQKDEDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQMD 312

Query: 257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP 316
            +G  P+H+A+  G + ++K L+    D+IE+     ++ILHVAAK+G  N+V+F+LK  
Sbjct: 313 SDGFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGQNILHVAAKYGKDNVVNFVLKEE 372

Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITR 376
            +EN IN  D+ GNTPLHLA M  H  VV +L+  K V++   N   R   AL I  +  
Sbjct: 373 RLENFINEKDKGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVND--RGQTALNIV-LPV 429

Query: 377 ADGKEIQKHLTLKALKTAYAKRA 399
                  + L   ALK+A A+ A
Sbjct: 430 KHPPTFHQALIWTALKSAGARPA 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.930	0.570	0.302	4.4e-39
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.836	0.563	0.288	5.5e-32
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.901	0.547	0.277	3.6e-30
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.932	0.676	0.272	1.1e-29
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.918	0.594	0.267	3.6e-29
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.867	0.518	0.278	1.9e-24
UNIPROTKB|F1NJ80	1699	ANK3 "Uncharacterized protein"	0.922	0.225	0.264	3.9e-22
UNIPROTKB|F1NNX8	1737	ANK3 "Uncharacterized protein"	0.922	0.220	0.264	4e-22
UNIPROTKB|F1NNX6	1824	ANK3 "Uncharacterized protein"	0.922	0.209	0.264	4.2e-22
UNIPROTKB|F1NNX7	1915	ANK3 "Uncharacterized protein"	0.922	0.2	0.264	4.5e-22

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 4.4e-39, P = 4.4e-39
 Identities = 123/406 (30%), Positives = 204/406 (50%)

Query:     1 MDQELLEVLRNGDENKIKQLALRQNI-FSTSSPGGNTVLHMAVRFRNQQVIREILRQQNF 59
             M  + +  +R GDE  ++ +    NI  S+ +  GNT+LH+A    +  ++  IL     
Sbjct:    97 MGPKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGNTMLHLAAAAGHTDLVCYILNA--- 153

Query:    60 IALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRD 119
                  +  LL + N M E  LH+AA  G+ A+V  +V ++  ++   P  V + ++  +D
Sbjct:   154 -----YPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDISCNKP-GVAKKIYFAKD 207

Query:   120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKS 179
                +  LH ++  +H +V   LV  +   S   N    +PL +A++A   D A  +   S
Sbjct:   208 RHQDNALHVSLKRKHLKVASCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQHS 267

Query:   180 PE-SLNTTRLPDEL---TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS 235
                S +T+ L  ++   +++H  +  +  DI+V IL  +  LI+  D   R  L + A+ 
Sbjct:   268 NNGSSSTSTLASKIGGRSIVHGAMKARRKDILVAILSEDASLINFRD-EGRTCLSFGASL 326

Query:   236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
             G  +    LL+++    Y  D +G  P+H+A + G +K+LK ++ + PDA+E+ D  +++
Sbjct:   327 GYYEGFCYLLDKALDSVYVSDDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQN 386

Query:   296 ILHVAAKHGNWNIVSFIL---KSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK 352
             +LHVAAK+G   ++ FIL   K    E LIN  D NGNTPLHLA    H  VV  L+   
Sbjct:   387 VLHVAAKNGKIEVLKFILRCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDN 446

Query:   353 SVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR 398
              V+++  N       AL+IAE          + LT  AL +A A R
Sbjct:   447 RVDLKTLNHDGVT--ALDIAEKNMDSSYTFFERLTWMALISAGAPR 490

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 5.5e-32, P = 5.5e-32
 Identities = 106/368 (28%), Positives = 182/368 (49%)

Query:    34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
             GN++LH+A    +  ++  I+    F       +LL+  NLM ET LH+AAR G+  IV 
Sbjct:    72 GNSILHIAAALGHVHIVEFII--STFP------NLLQNVNLMGETTLHVAARAGSLNIVE 123

Query:    94 EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
              +V+++   +        ++    +   G+T LH A+  +H  V   LV      S   N
Sbjct:   124 ILVRFITESSS------YDAFIAAKSKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKN 177

Query:   154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGT 213
                 +PL +A++A  ++    +++ S        +    +++H  +     DI+  +L  
Sbjct:   178 NDEASPLYMAVEAGYHELVLKMLESSSSPSILASMFSGKSVIHAAMKANRRDILGIVLRQ 237

Query:   214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE----SKQLAYKRDCNGETPLHLAAEN 269
             +  LI+  +   R  L Y A+ G  +  + +L E    +  L Y  D +G TP+H+AA+ 
Sbjct:   238 DPGLIELRNEEGRTCLSYGASMGCYEGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKE 297

Query:   270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNG 329
             G ++++K  +   PD+ E+ +N  ++I HVAA  G   +V ++LK  E + ++N  D NG
Sbjct:   298 GHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDEGKRMMNEQDING 357

Query:   330 NTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEI-QKHLTL 388
             NTPLHLA    +  VV  L+ +  +N+RA N       AL+IAE  + +   +  K L  
Sbjct:   358 NTPLHLATKHRYPIVVNMLTWNDGINLRALNNEGFT--ALDIAETMKDNNAYVLYKRLIW 415

Query:   389 KALKTAYA 396
              AL +A A
Sbjct:   416 MALVSAGA 423

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 3.6e-30, P = 3.6e-30
 Identities = 110/397 (27%), Positives = 196/397 (49%)

Query:     1 MDQELLEVLRNGDENKIKQLALRQN-IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNF 59
             M+ E+L  L  G+E  +++L      +    +  G++VLH+A  + + ++++ I+ + + 
Sbjct:    87 MNAEMLSTL--GNEEWLEKLRSHGTPLTCLKNDRGDSVLHLAATWSHLELVKNIVSECS- 143

Query:    60 IALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL--FRM 117
                     LL + N  D+ PLH+AAR+G+ A+V ++V  V   +        E L  + +
Sbjct:   144 -------CLLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILNPYLL 196

Query:   118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSA---CF 174
             +DI G+T L+ A+   +  V   LV  +   S    K   +PL +A++A+  D++     
Sbjct:   197 KDINGDTALNLALKGHYTEVALCLVNANRQASFLACKDGISPLYLAVEAK--DASLVKAM 254

Query:   175 IIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAA 234
             + +  P+  N   L     L H  +   + DI+  IL     L+D  D   R  L + A+
Sbjct:   255 LGNDGPQRKNLN-LEGRKYLAHAALNSLSTDILDVILNEYPSLVDERDEEGRTCLSFGAS 313

Query:   235 SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDR 294
              G  K    LL  S++  +  D +G  P+HLA E G++KV+K +  + P +  + +   +
Sbjct:   314 IGYHKGVCNLLNRSRKGVFVCDDDGSYPIHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQ 373

Query:   295 SILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354
             ++LH+AA+ G + I+  +    ++ +L N  D +GNTPLHLA +      V  L   K++
Sbjct:   374 NLLHIAAESGKFRILRHLTAHEQINHLANEKDVDGNTPLHLATIYWRPRAVRELGGKKNL 433

Query:   355 NIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKAL 391
              I+  N      +AL+IAE         ++ LTL AL
Sbjct:   434 LIQNNN----GLVALDIAESKLQPHYIFRERLTLLAL 466

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 111/408 (27%), Positives = 197/408 (48%)

Query:     1 MDQELLEVLRNGDENKIKQL-ALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNF 59
             M+ E+   L +GD+  ++ L  +   +    S  G++VLH+A R+ + ++++ I+ +   
Sbjct:    81 MNTEVFSGLSDGDKECLEMLKGVGTPMACLKSDRGDSVLHLAARWGHLELVKNIISECPC 140

Query:    60 IALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL--FRM 117
             + L L        N  D+ PLH+AA  G+ AIV  +V  V   +        E L  + +
Sbjct:   141 LVLEL--------NFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPYVL 192

Query:   118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFII- 176
             RD  GNT LH A+  ++  +   LV ++   S   N    + L +A++A        I+ 
Sbjct:   193 RDKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVKEILK 252

Query:   177 ---DKSPESLNT---TRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH 230
                +   E  N+   ++L     L+H  +  ++  ++  IL     L D  D   R  L 
Sbjct:   253 TAGNNDLEGRNSNLDSKLEGRKHLVHVALNARSIGVLDVILNEYPSLEDERDEEGRTCLS 312

Query:   231 YAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD 290
             +AA+ G  K    LL+ S +  Y  D +G  P+H AAENG ++++K ++ + P +  + +
Sbjct:   313 FAASIGFYKGVCNLLDRSTKNVYVCDEDGSFPIHTAAENGHIRIVKEILKRCPHSKHMLN 372

Query:   291 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
                +++LH+AAK G  N+V  +++S + ++L    D +GNTPLHLA +      + TL+ 
Sbjct:   373 KLGQNVLHIAAKIGEHNLVKSLMRSDDTKHLGVGQDVDGNTPLHLAVLNWRYRSIRTLAS 432

Query:   351 HKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR 398
                + ++ +N +     A  IAE          + LTL  L  A+A R
Sbjct:   433 DVKI-LQLRNDNGLT--ARGIAESVLKPNYIFHERLTLAFLLDAHAFR 477

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 3.6e-29, P = 3.6e-29
 Identities = 107/400 (26%), Positives = 187/400 (46%)

Query:     1 MDQELLEVLRNGDENKIKQLALRQN--IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQN 58
             M+ E+   +R G+   + ++    N  +    +  G+  LH+A  +   ++++ I+ +  
Sbjct:    36 MNPEIFSAMRAGNVKFLDKMKTNNNTPLACFRNETGDFTLHLAAAWGRLELVKRIVSECP 95

Query:    59 FIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE--SLFR 116
                      LL + N  D+ PLH AA  G  A+V   V  V  ++        E  +L+ 
Sbjct:    96 --------CLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVNLYA 147

Query:   117 MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFII 176
             M+DI+GNT LH A+   H +    LV+ + + S   N    +PL  AI A        ++
Sbjct:   148 MKDIDGNTALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSLTLVEAMM 207

Query:   177 DKSPESLN-TTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS 235
                 ++ N  ++L    +L+H  +  +N DI+  IL  +  L++  D   R  L  AA  
Sbjct:   208 YVPGQTCNLASKLEGRKSLVHAALKAKNSDILDVILSEDPSLVNERDEEGRTCLSVAAYV 267

Query:   236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
             G  K    LL  S    ++ D +G  P+H+A E G++K+   L+   PD+  + +   ++
Sbjct:   268 GYYKGVVNLLHRSTSNVFECDDDGSYPIHMAVEKGRVKIFLKLLKCCPDSQYLLNKQGQN 327

Query:   296 ILHVAAKHGNWNIVSF-ILKSPEM--ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK 352
             ILH+AAK G        ++K+ ++   +LI   D +GNTPLHLA +      V  L++  
Sbjct:   328 ILHIAAKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDGNTPLHLATLTWRPRTVNILNKFT 387

Query:   353 SVN-IRAKNRSARNNIALEIAEITRADGKEIQKHLTLKAL 391
               N +  +N+   +  AL+IAE         ++ +TL  L
Sbjct:   388 LGNHLHIRNKDGLS--ALDIAESNLQSNYVFRERMTLMVL 425

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 106/380 (27%), Positives = 187/380 (49%)

Query:     1 MDQELLEVLRNGDENKIKQLALRQ-NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNF 59
             M  E+   + +G++  +++L  R  ++    S  G+++LH+AV + + ++++EI+ +   
Sbjct:    98 MIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCE--- 154

Query:    60 IALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL--FRM 117
                RL   LL Q N   +TPLH+AA  G+  IV   V  V   +        E +  + +
Sbjct:   155 -CPRL---LLEQ-NSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVL 209

Query:   118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI---DARLNDSACF 174
             +D +GNT L+ A+  ++  +   LV  +       NK   + L +AI   D  L  +   
Sbjct:   210 KDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILK 269

Query:   175 IID----KSPESLNTTRLPDELTLLHFVVMRQNY-DIMVKILGTNKELIDRLDWHQRNPL 229
             II     K  +S   ++L  + +L H  ++ Q+   ++  IL     L+D  D +    L
Sbjct:   270 IIGNKDLKGKKSNLESKLQGQKSLAHVALVTQSIAGVLDVILDEYPSLMDERDINGWTCL 329

Query:   230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
               AA  G  +    LLE S +  Y  D +G  P+H AAE G   +++  I + P +  + 
Sbjct:   330 SLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIHTAAEKGHENIVEEFIKRCPGSKHLL 389

Query:   290 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
             +   +++LH+AAK+G + I + ++ + + E+L    D +GNTPLHLA M  H   +  L+
Sbjct:   390 NKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLA 449

Query:   350 RH-KSVNIRAKNRSARNNIA 368
             R  K + +R KN     +IA
Sbjct:   450 RSSKILKVRNKNGLRARDIA 469

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NJ80 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 286 (105.7 bits), Expect = 3.9e-22, P = 3.9e-22
 Identities = 113/428 (26%), Positives = 194/428 (45%)

Query:    12 GDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ 71
             G  N + QL       +T++  G T LHMA R    +V+R ++  QN   +       + 
Sbjct:   402 GHVNIVSQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLV--QNGAQVEA-----KA 454

Query:    72 KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQA---GPLPV-LESLFRMRDI------- 120
             K+  D+TPLHI+AR+G   IV ++++   + N A   G  P+ L +     D+       
Sbjct:   455 KD--DQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEH 512

Query:   121 ---------EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
                      +G TPLH A       V  +L++K++ P +   K+  TPL +A        
Sbjct:   513 GASLAIITKKGFTPLHVAAKYGKIEVANLLLQKNASPDAS-GKSGLTPLHVAAHYDNQKV 571

Query:   172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
             A  ++D+      + +  +  T LH    +   DI   +L  G +   + R       P+
Sbjct:   572 ALLLLDQGASPHASAK--NGYTPLHIAAKKNQMDIATTLLEYGADANAVTR---QGIAPV 626

Query:   230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
             H A+  G+V M   LL  +  +      +G TPLHLAA+  ++ V ++L+N+   A++ +
Sbjct:   627 HLASQDGHVDMVSLLLTRNANVNLSNK-SGLTPLHLAAQEDRVNVAEVLVNQGA-AVDAQ 684

Query:   290 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
                  + LHV   +GN  IV+F+L+       IN   +NG TPLH AA   H+ ++  L 
Sbjct:   685 TKMGYTPLHVGCHYGNIKIVNFLLQHSAK---INAKTKNGYTPLHQAAQQGHTHIINVLL 741

Query:   350 RHKSV-NIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEE-LQQ 407
             +H +  N    N +    IA  +  I+  D  ++    T+  + T   K  ++  E + +
Sbjct:   742 QHGAAPNELTVNGNTALAIAKRLGYISVVDTLKVVTEETMTTI-TVTEKHKMNVPETMNE 800

Query:   408 KRQVSKEE 415
                +S +E
Sbjct:   801 VLDMSDDE 808

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX8 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 286 (105.7 bits), Expect = 4.0e-22, P = 4.0e-22
 Identities = 113/428 (26%), Positives = 194/428 (45%)

Query:    12 GDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ 71
             G  N + QL       +T++  G T LHMA R    +V+R ++  QN   +       + 
Sbjct:   402 GHVNIVSQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLV--QNGAQVEA-----KA 454

Query:    72 KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQA---GPLPV-LESLFRMRDI------- 120
             K+  D+TPLHI+AR+G   IV ++++   + N A   G  P+ L +     D+       
Sbjct:   455 KD--DQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEH 512

Query:   121 ---------EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
                      +G TPLH A       V  +L++K++ P +   K+  TPL +A        
Sbjct:   513 GASLAIITKKGFTPLHVAAKYGKIEVANLLLQKNASPDAS-GKSGLTPLHVAAHYDNQKV 571

Query:   172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
             A  ++D+      + +  +  T LH    +   DI   +L  G +   + R       P+
Sbjct:   572 ALLLLDQGASPHASAK--NGYTPLHIAAKKNQMDIATTLLEYGADANAVTR---QGIAPV 626

Query:   230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
             H A+  G+V M   LL  +  +      +G TPLHLAA+  ++ V ++L+N+   A++ +
Sbjct:   627 HLASQDGHVDMVSLLLTRNANVNLSNK-SGLTPLHLAAQEDRVNVAEVLVNQGA-AVDAQ 684

Query:   290 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
                  + LHV   +GN  IV+F+L+       IN   +NG TPLH AA   H+ ++  L 
Sbjct:   685 TKMGYTPLHVGCHYGNIKIVNFLLQHSAK---INAKTKNGYTPLHQAAQQGHTHIINVLL 741

Query:   350 RHKSV-NIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEE-LQQ 407
             +H +  N    N +    IA  +  I+  D  ++    T+  + T   K  ++  E + +
Sbjct:   742 QHGAAPNELTVNGNTALAIAKRLGYISVVDTLKVVTEETMTTI-TVTEKHKMNVPETMNE 800

Query:   408 KRQVSKEE 415
                +S +E
Sbjct:   801 VLDMSDDE 808

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX6 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 286 (105.7 bits), Expect = 4.2e-22, P = 4.2e-22
 Identities = 113/428 (26%), Positives = 194/428 (45%)

Query:    12 GDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ 71
             G  N + QL       +T++  G T LHMA R    +V+R ++  QN   +       + 
Sbjct:   402 GHVNIVSQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLV--QNGAQVEA-----KA 454

Query:    72 KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQA---GPLPV-LESLFRMRDI------- 120
             K+  D+TPLHI+AR+G   IV ++++   + N A   G  P+ L +     D+       
Sbjct:   455 KD--DQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEH 512

Query:   121 ---------EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
                      +G TPLH A       V  +L++K++ P +   K+  TPL +A        
Sbjct:   513 GASLAIITKKGFTPLHVAAKYGKIEVANLLLQKNASPDAS-GKSGLTPLHVAAHYDNQKV 571

Query:   172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
             A  ++D+      + +  +  T LH    +   DI   +L  G +   + R       P+
Sbjct:   572 ALLLLDQGASPHASAK--NGYTPLHIAAKKNQMDIATTLLEYGADANAVTR---QGIAPV 626

Query:   230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
             H A+  G+V M   LL  +  +      +G TPLHLAA+  ++ V ++L+N+   A++ +
Sbjct:   627 HLASQDGHVDMVSLLLTRNANVNLSNK-SGLTPLHLAAQEDRVNVAEVLVNQGA-AVDAQ 684

Query:   290 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
                  + LHV   +GN  IV+F+L+       IN   +NG TPLH AA   H+ ++  L 
Sbjct:   685 TKMGYTPLHVGCHYGNIKIVNFLLQHSAK---INAKTKNGYTPLHQAAQQGHTHIINVLL 741

Query:   350 RHKSV-NIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEE-LQQ 407
             +H +  N    N +    IA  +  I+  D  ++    T+  + T   K  ++  E + +
Sbjct:   742 QHGAAPNELTVNGNTALAIAKRLGYISVVDTLKVVTEETMTTI-TVTEKHKMNVPETMNE 800

Query:   408 KRQVSKEE 415
                +S +E
Sbjct:   801 VLDMSDDE 808

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX7 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 286 (105.7 bits), Expect = 4.5e-22, P = 4.5e-22
 Identities = 113/428 (26%), Positives = 194/428 (45%)

Query:    12 GDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ 71
             G  N + QL       +T++  G T LHMA R    +V+R ++  QN   +       + 
Sbjct:   402 GHVNIVSQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLV--QNGAQVEA-----KA 454

Query:    72 KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQA---GPLPV-LESLFRMRDI------- 120
             K+  D+TPLHI+AR+G   IV ++++   + N A   G  P+ L +     D+       
Sbjct:   455 KD--DQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEH 512

Query:   121 ---------EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
                      +G TPLH A       V  +L++K++ P +   K+  TPL +A        
Sbjct:   513 GASLAIITKKGFTPLHVAAKYGKIEVANLLLQKNASPDAS-GKSGLTPLHVAAHYDNQKV 571

Query:   172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
             A  ++D+      + +  +  T LH    +   DI   +L  G +   + R       P+
Sbjct:   572 ALLLLDQGASPHASAK--NGYTPLHIAAKKNQMDIATTLLEYGADANAVTR---QGIAPV 626

Query:   230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
             H A+  G+V M   LL  +  +      +G TPLHLAA+  ++ V ++L+N+   A++ +
Sbjct:   627 HLASQDGHVDMVSLLLTRNANVNLSNK-SGLTPLHLAAQEDRVNVAEVLVNQGA-AVDAQ 684

Query:   290 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
                  + LHV   +GN  IV+F+L+       IN   +NG TPLH AA   H+ ++  L 
Sbjct:   685 TKMGYTPLHVGCHYGNIKIVNFLLQHSAK---INAKTKNGYTPLHQAAQQGHTHIINVLL 741

Query:   350 RHKSV-NIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEE-LQQ 407
             +H +  N    N +    IA  +  I+  D  ++    T+  + T   K  ++  E + +
Sbjct:   742 QHGAAPNELTVNGNTALAIAKRLGYISVVDTLKVVTEETMTTI-TVTEKHKMNVPETMNE 800

Query:   408 KRQVSKEE 415
                +S +E
Sbjct:   801 VLDMSDDE 808

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	4e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	6e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  106 bits (266), Expect = 7e-28
 Identities = 52/127 (40%), Positives = 80/127 (62%), Gaps = 5/127 (3%)

Query: 219 DRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLL 278
           +  D   R PLH AA++G++++ + LLE    +   +D +G TPLHLAA+NG L+++KLL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 279 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
           + K  D +  RD    + LH+AA++GN ++V  +LK       +N  D++G TPLHLAA 
Sbjct: 60  LEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAK 115

Query: 339 GLHSDVV 345
             H +VV
Sbjct: 116 NGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.1 bits (224), Expect = 7e-22
 Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 3/124 (2%)

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           D  T LH      + ++ VK+L  N   ++  D   R PLH AA +G++++ + LLE   
Sbjct: 6   DGRTPLHLAASNGHLEV-VKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KG 63

Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
                RD +G TPLHLAA NG L V+KLL+    D +  RD   R+ LH+AAK+G+  +V
Sbjct: 64  ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVV 122

Query: 310 SFIL 313
             +L
Sbjct: 123 KLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 85.9 bits (213), Expect = 3e-20
 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 5/107 (4%)

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           RD +G TPLHLAA NG L+V+KLL+    D +  +DN  R+ LH+AAK+G+  IV  +L+
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVNIRAKN 360
                  +N  D++GNTPLHLAA   + DVV  L      VN R K+
Sbjct: 62  KG---ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 38/163 (23%)

Query: 117 MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFII 176
            RD +G TPLH A +N H  V+++L+E  +  +   +   +TPL +A             
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAA------------ 48

Query: 177 DKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
                                   +  +  +VK+L      ++  D     PLH AA +G
Sbjct: 49  ------------------------KNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG 84

Query: 237 NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
           N+ + + LL+    +   RD +G TPLHLAA+NG L+V+KLL+
Sbjct: 85  NLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 7/98 (7%)

Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI 322
           LHLAA+NG L+++KLL+ K  D   +      + LH+AA++GN  IV  +L   E    +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIVKLLL---EHGADV 54

Query: 323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
           N  D++GNT LHLAA   + ++V  L  H + +I  K+
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGA-DINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 23/137 (16%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G T LH+A    + +V++ +L     +  +         +    TPLH+AA+ G+  IV 
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAK---------DNDGRTPLHLAAKNGHLEIVK 57

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            +++    VN              RD +GNTPLH A  N +  V+++L++  +  ++  +
Sbjct: 58  LLLEKGADVN-------------ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA-RD 103

Query: 154 KAYQTPLSIAIDARLND 170
           K  +TPL +A      +
Sbjct: 104 KDGRTPLHLAAKNGHLE 120

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 50/175 (28%)

Query: 71  QKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV 130
            ++    TPLH+AA  G+  +V  +++    VN              +D +G TPLH A 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-------------KDNDGRTPLHLAA 48

Query: 131 TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPD 190
            N H  ++++L+EK +  ++  +K   TPL +A      D    ++              
Sbjct: 49  KNGHLEIVKLLLEKGADVNA-RDKDGNTPLHLAARNGNLDVVKLLLKH------------ 95

Query: 191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
                                G +    D+     R PLH AA +G++++ + LL
Sbjct: 96  ---------------------GADVNARDK---DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYK 254
           LH      N ++ VK+L      ++  D      LH AA +GN+++ + LLE    +  K
Sbjct: 1   LHLAAKNGNLEL-VKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD 290
            D +G T LHLAA NG L+++KLL+    D I ++D
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHGAD-INLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
            RD   R+ LH+AA +G+  +V  +L++      +N  D +G TPLHLAA   H ++V  
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG---ADVNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 348 LSRHK-SVNIRAKN 360
           L      VN R K+
Sbjct: 59  LLEKGADVNARDKD 72

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 32/278 (11%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK-- 178
           E  TPL +A+ +   +++ + + K     ++IN     PL  AI    +D    +ID   
Sbjct: 34  ETTTPLIDAIRSGDAKIVELFI-KHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGV 92

Query: 179 ----------SPESLNT---------TRLPDELTLLHFVVMRQNYDIMVKILGTNKELID 219
                       + + T          +  +  T LH+ + + + +  +K+L      ++
Sbjct: 93  DTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLES-IKMLFEYGADVN 151

Query: 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
             D +   P+H A       + + LLE+      K D NGE+PLH AAE G    +KLLI
Sbjct: 152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLLI 210

Query: 280 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMG 339
           + + + I  +  +  + LH A  H N + +  ++ +      IN  D +G+TPLH A   
Sbjct: 211 D-HGNHIMNKCKNGFTPLHNAIIH-NRSAIELLINNAS----INDQDIDGSTPLHHAINP 264

Query: 340 LHS-DVVFTLSRHKSVNIRAKNRSARNNIALEIAEITR 376
               D++  L  HK+ +I  K+    N I      I +
Sbjct: 265 PCDIDIIDILLYHKA-DISIKDNKGENPIDTAFKYINK 301

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 38/279 (13%)

Query: 126 LHNAVTNQHKRVIRI-----LVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP 180
           L++ +     R+I++     ++ +D +      K    PL +A +AR  D    ++D   
Sbjct: 1   LYSYIVLTKSRIIKVKNIKYIIMEDDLNDYSYKKPV-LPLYLAKEARNIDVVKILLDNG- 58

Query: 181 ESLNTTRLPDELTLLHFV-----VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAA- 234
             +N++   +  T LH++      +    +I VK+L      ++  D +   PL YA + 
Sbjct: 59  ADINSSTK-NNSTPLHYLSNIKYNLTDVKEI-VKLLLEYGANVNAPDNNGITPLLYAISK 116

Query: 235 -SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENG--KLKVLKLLINK---------- 281
            S +  + + LL+    +  K   +GE  LHL  E+    LK+LKLLI+K          
Sbjct: 117 KSNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRV 175

Query: 282 -----YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
                Y   I I+D    + LH A  + N   V ++L   ++    NLV++ G+TPLH+A
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL---DLGANPNLVNKYGDTPLHIA 232

Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT 375
            +  + ++   L  +   +I+    +       ++  IT
Sbjct: 233 ILNNNKEIFKLLLNNGP-SIKTIIETLLYFKDKDLNTIT 270

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
            R  LH AA SG +++ + LLE+   +  + D +G T LH+AAENG L+VLKLL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.0 bits (134), Expect = 6e-09
 Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 10/199 (5%)

Query: 123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPES 182
           N  L  A+         +L        +  +   + PL     A   D     +  +  +
Sbjct: 40  NLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPL--HSAASKGDDKIVKLLLASGA 97

Query: 183 LNTTRLPDELTLLHFVVMRQNYDI----MVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
               +  D  T LH   +  N       + K+L   G + ++ +  D     PLH+AA +
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN 157

Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
           G+  + + LLE        R+  G T L  AA+NG+++++KLL++K      ++ N +  
Sbjct: 158 GDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGV 216

Query: 296 ILHVAAKHGNWNIVSFILK 314
                +K    N+ S I+ 
Sbjct: 217 ANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 24/109 (22%)

Query: 38  LHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVK 97
           LH+A +  N ++++ +L +           +        +T LH+AAR GN  IV  +++
Sbjct: 1   LHLAAKNGNLELVKLLLEK--------GADVNLGDT---DTALHLAARNGNLEIVKLLLE 49

Query: 98  YVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS 146
           +   VN              +D +GNT LH A  N +  ++++L+E  +
Sbjct: 50  HGADVN-------------AKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.1 bits (124), Expect = 9e-08
 Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 11/160 (6%)

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK 273
               +   D   R PLH AA+ G+ K+ + LL     +   +D +G+TPLHLAA NG   
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA-KDADGDTPLHLAALNGNPP 120

Query: 274 -----VLKLLI--NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVD 326
                V KLL+      D   +RD    + LH AA +G+ +IV  +L++       N  +
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG---ADPNSRN 177

Query: 327 RNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNN 366
             G T L  AA     ++V  L          K       
Sbjct: 178 SYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVA 217

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
           T LH AA +G+L+++K L+ K  D I   D    + LH+AA++GN  ++  +L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 78/311 (25%), Positives = 129/311 (41%), Gaps = 56/311 (18%)

Query: 38  LHMAVRFRNQQVIREIL-RQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIV 96
           LH AV  RN  V++ +L R  N          + Q +  D TPLHI  +  N+  + E++
Sbjct: 41  LHQAVEARNLDVVKSLLTRGHN----------VNQPDHRDLTPLHIICKEPNKLGMKEMI 90

Query: 97  KYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRI-LVEKDSVPSSYINKA 155
           + +   +    L  ++  F  R++E    +   +TN++K +  I LV  D      I +A
Sbjct: 91  RSINKCSVFYTLVAIKDAFNNRNVEIFKII---LTNRYKNIQTIDLVYIDKKSKDDIIEA 147

Query: 156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GT 213
             T L ++  A +N     + D+   +          T LH+    ++  +   +L  G 
Sbjct: 148 EITKLLLSYGADIN-----MKDRHKGN----------TALHYATENKDQRLTELLLSYGA 192

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK-L 272
           N  + D+ +    +PLH+A    N  +   LLE       +  C G TPLH++    K  
Sbjct: 193 NVNIPDKTN---NSPLHHAVKHYNKPIVHILLENGASTDARDKC-GNTPLHISVGYCKDY 248

Query: 273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL-------INLV 325
            +LKLL+    D      N+   IL + A H +       +KS     L       IN +
Sbjct: 249 DILKLLLEHGVDV-----NAKSYILGLTALHSS-------IKSERKLKLLLEYGADINSL 296

Query: 326 DRNGNTPLHLA 336
           +    TPL  A
Sbjct: 297 NSYKLTPLSSA 307

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 278 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
           L+   P  +   D +  + LH+AAK+G   +V ++LK       +NL D +G T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD---LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 294 RSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
           R+ LH AA  G   +V ++L   E    IN  D +GNT LH+AA   + +V+  L
Sbjct: 2   RTALHKAAISGRLELVKYLL---EKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
            + +L +  D      L  A           L     +    RD +G  PLH AA  G  
Sbjct: 27  LSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDD 86

Query: 273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-----WNIVSFILKSPEMENLINLVDR 327
           K++KLL+    D +  +D    + LH+AA +GN       +   +L++    ++ NL D 
Sbjct: 87  KIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Query: 328 NGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 360
           +GNTPLH AA+   +D+V   L      N R   
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179

Length = 235

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 40/171 (23%), Positives = 62/171 (36%), Gaps = 36/171 (21%)

Query: 200 MRQNYDIMVKILGTNKELIDRLDWHQRNP------LHYAAAS--GNVKMAQRLLEE---- 247
           + ++   +  I   N EL + L             LH  +      V+     L      
Sbjct: 51  LGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRK 110

Query: 248 --SKQLAYKRDCN----GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD-------- 293
               +LA  +  +    G T LHLAA     +++KLL+ +    +  R   D        
Sbjct: 111 SGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQGV 169

Query: 294 ------RSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
                  S L+ AA  G+ +IV+ + + P     I   D  GNT LHL  M
Sbjct: 170 DSFYHGESPLNAAACLGSPSIVALLSEDPAD---ILTADSLGNTLLHLLVM 217

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 66/286 (23%), Positives = 101/286 (35%), Gaps = 80/286 (27%)

Query: 91  IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH---KRVIRILVEKDSV 147
            V  ++     VN  G               G TPLH  +       K ++R+L+E    
Sbjct: 29  EVRRLLAAGADVNFRGEY-------------GKTPLHLYLHYSSEKVKDIVRLLLEA--- 72

Query: 148 PSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIM 207
                           ++A      C                   T LH  +       +
Sbjct: 73  -------------GADVNAP---ERC-----------------GFTPLHLYLYNATTLDV 99

Query: 208 VKIL---GTNKELIDRLDWHQRNPLHYAAASGNV--KMAQRLLEESKQLAYKRDCNGETP 262
           +K+L   G +    D++    R PLH   +  N+  K+ + LL +   +    D  G TP
Sbjct: 100 IKLLIKAGADVNAKDKVG---RTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTP 155

Query: 263 LH--LAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           L   L + N  +++L+LLI+   D     D+  RS+LH           SF  ++  +  
Sbjct: 156 LAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHL-------QSFKPRARIVRE 207

Query: 321 LINL------VDRNGNTPLHLAAMGL---HSDVVFTLSRHKSVNIR 357
           LI         D  GNTPLH  A G     S V+  L    S+N R
Sbjct: 208 LIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINAR 253

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 46/215 (21%), Positives = 96/215 (44%), Gaps = 4/215 (1%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP 180
           +G +P+  A+  +    I++L++  ++P        ++ L  A++   +  A   +    
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIESELHDAVE-EGDVKAVEELLDLG 91

Query: 181 ESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKM 240
           +  +     D +T LH   + +  DIM K+L       D  +  + +PLH A   G++K 
Sbjct: 92  KFADDVFYKDGMTPLHLATILKKLDIM-KLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150

Query: 241 AQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVA 300
            + L++    L  + DC G TPL +A   G + + K+L++   +      N   + L  A
Sbjct: 151 IELLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYA 209

Query: 301 AKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHL 335
            ++   +IV   +K     N++ +++    T L +
Sbjct: 210 IENNKIDIVRLFIKRGADCNIMFMIEGEECTILDM 244

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 11/248 (4%)

Query: 125 PLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLN 184
           PLH AV  ++  V++ L+ +    +   ++   TPL I            +I     S+N
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHR-DLTPLHIICKEPNKLGMKEMI----RSIN 94

Query: 185 TTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
              +   L  +      +N +I   IL    + I  +D    +           ++ + L
Sbjct: 95  KCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDD-IIEAEITKLL 153

Query: 245 LEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
           L     +  K    G T LH A EN   ++ +LL++ Y   + I D ++ S LH A KH 
Sbjct: 154 LSYGADINMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDKTNNSPLHHAVKHY 212

Query: 305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSAR 364
           N  IV  +L   E     +  D+ GNTPLH++        +  L     V++ AK+    
Sbjct: 213 NKPIVHILL---ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS-YIL 268

Query: 365 NNIALEIA 372
              AL  +
Sbjct: 269 GLTALHSS 276

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
           +G TPLHLAA NG L+V+KLL+    D +  RD 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGAD-VNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 210 ILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLA 266
           +L      ++  D +   PLH AA  G +++ Q LL+        RD +G T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G+T LH+A           I   +  +       +   ++    TPLH AA  G+  IV 
Sbjct: 106 GDTPLHLAAL-NGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVE 164

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            +++     N              R+  G T L  A  N    ++++L++K    S    
Sbjct: 165 LLLEAGADPNS-------------RNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKF 211

Query: 154 KA 155
             
Sbjct: 212 NL 213

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 59/244 (24%), Positives = 97/244 (39%), Gaps = 44/244 (18%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
           K+   +T LH A + G+   +  + +Y   VN             + D  G  P+H A+ 
Sbjct: 120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVN-------------IEDDNGCYPIHIAIK 166

Query: 132 NQHKRVIRILVEKDS---VPSSYINKAYQTPLSIAIDARLNDSAC--FIIDKSPESLNTT 186
           +    +I++L+EK +   V  +       +PL  A  A   D AC   +ID     +N  
Sbjct: 167 HNFFDIIKLLLEKGAYANVKDNNGE----SPLHNA--AEYGDYACIKLLIDHGNHIMNKC 220

Query: 187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           +  +  T LH  ++   ++     L  N   I+  D     PLH+A           +L 
Sbjct: 221 K--NGFTPLHNAII---HNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILL 275

Query: 247 ESKQLAYKRDCNGETPLHLAAEN-GKLKVLKLLI---------NKYPDA-----IEIRDN 291
             K     +D  GE P+  A +   K  V+K +I         +K  D+     IEI+DN
Sbjct: 276 YHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDN 335

Query: 292 SDRS 295
            + S
Sbjct: 336 KEFS 339

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 26/185 (14%)

Query: 124 TPLHNAVTNQH-----KRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN--------- 169
           TPLH     ++     K ++++L+E  +  ++  N    TPL  AI  + N         
Sbjct: 70  TPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGI-TPLLYAISKKSNSYSIVEYLL 128

Query: 170 DSACFIIDKSPESLNTTRL-----PDELTLLHFVVMRQNYDI----MVKILGTNKELIDR 220
           D+   +  K+ +  N   L       +L +L  ++ +   DI     V  L +    I+ 
Sbjct: 129 DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRVNYLLSYGVPINI 187

Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
            D +   PLHYA  + N +  + LL+         +  G+TPLH+A  N   ++ KLL+N
Sbjct: 188 KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL-VNKYGDTPLHIAILNNNKEIFKLLLN 246

Query: 281 KYPDA 285
             P  
Sbjct: 247 NGPSI 251

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVA 300
           LLE         D NG TPLHLAA+ G L++++ L+    D + +RD+   + L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD-LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 51/255 (20%), Positives = 99/255 (38%), Gaps = 64/255 (25%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMD-ETPLHIAARIGNRAIV 92
           G + + +A++FR+ + I+          L + +  +      D E+ LH A   G+   V
Sbjct: 35  GISPIKLAMKFRDSEAIK----------LLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84

Query: 93  SEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
            E++      +        +  ++    +G TPLH A   +   ++++L+ + +      
Sbjct: 85  EELLDLGKFAD--------DVFYK----DGMTPLHLATILKKLDIMKLLIARGA------ 126

Query: 153 NKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILG 212
                                      P+  NT    D+ + LH  VM  +    +++L 
Sbjct: 127 --------------------------DPDIPNT----DKFSPLHLAVMMGDIK-GIELLI 155

Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAY--KRDCNGETPLHLAAENG 270
            +K  +D  D     PL  A A G++ + + LL+    + Y  K  C     L  A EN 
Sbjct: 156 DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGC--VAALCYAIENN 213

Query: 271 KLKVLKLLINKYPDA 285
           K+ +++L I +  D 
Sbjct: 214 KIDIVRLFIKRGADC 228

Length = 413

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 38/131 (29%)

Query: 233 AASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS 292
           AASG+  +  R+L         RD +G TPLH+A  NG ++V+++L+    D        
Sbjct: 90  AASGDA-VGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP------- 141

Query: 293 DRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK 352
                                          L+D++G TPL LA      +VV  LSRH 
Sbjct: 142 ------------------------------TLLDKDGKTPLELAEENGFREVVQLLSRHS 171

Query: 353 SVNIRAKNRSA 363
             +      + 
Sbjct: 172 QCHFELGANAK 182

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267
            +IL T     +  D+  R PLH A A+G+V++ + LLE         D +G+TPL LA 
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAE 156

Query: 268 ENGKLKVLKLL 278
           ENG  +V++LL
Sbjct: 157 ENGFREVVQLL 167

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPD 284
           +G TPLHLAAENG L+V+KLL++K  D
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 50/244 (20%)

Query: 63  RLHYSLLRQKNL---MDETPLHIAARIGNRAIVSEIVKYV-PAVNQAGPLPVLESLFRMR 118
                LL   +    + +T LH A  +     V  I+ ++  A  ++GPL +    +   
Sbjct: 66  LELTELLLNLSCRGAVGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE 124

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKD-SVP----------SSYINKAY--QTPLSIAID 165
              G T LH A   Q+  ++++L+E+  SVP          S  ++  Y  ++PL+ A  
Sbjct: 125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAA-- 182

Query: 166 ARLNDSACF----IIDKSPESLNTTRLPDEL--TLLHFVVM------------RQNYDIM 207
                 AC     I+    E        D L  TLLH +VM             Q Y+  
Sbjct: 183 ------ACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFA 236

Query: 208 VKILG---TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-ESKQLAYKRDCNGETPL 263
           + +L     +KEL   L+     PL  AA  G + + +  L  + KQ  +    NG    
Sbjct: 237 LSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNG--QQ 294

Query: 264 HLAA 267
            L+ 
Sbjct: 295 LLSL 298

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPD 284
           +G TPLHLAA NG L+++KLL+    D
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 80/319 (25%)

Query: 34  GNTVLHMAVRFRNQQ---VIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRA 90
           G T LH+ + + +++   ++R +L     +                 TPLH+        
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGF---------TPLHLYLYNATTL 97

Query: 91  -IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ--HKRVIRILVEKDSV 147
            ++  ++K    VN              +D  G TPLH  ++    + +VIR+L+ K + 
Sbjct: 98  DVIKLLIKAGADVN-------------AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD 144

Query: 148 PSSYINKAYQTPLSIAIDARLNDSACFIIDK--SPESLNTTRLPDELTLLHFVVMRQNYD 205
            ++ ++    TPL           A  +  +  + E L        L +     +    D
Sbjct: 145 VNA-LDLYGMTPL-----------AVLLKSRNANVELLR-------LLIDAGADVYAVDD 185

Query: 206 IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL---AYKRDCNGETP 262
                               R+ LH+   S   K   R++ E  +        D  G TP
Sbjct: 186 RF------------------RSLLHHHLQS--FKPRARIVRELIRAGCDPAATDMLGNTP 225

Query: 263 LHLAAENG---KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 319
           LH  A      +  VL LLI     +I  R+   ++ LH AA   N      ++    + 
Sbjct: 226 LHSMATGSSCKRSLVLPLLIAGI--SINARNRYGQTPLHYAAVFNNPRACRRLIA---LG 280

Query: 320 NLINLVDRNGNTPLHLAAM 338
             IN V  +GNTPL L   
Sbjct: 281 ADINAVSSDGNTPLSLMVR 299

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 13/65 (20%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
           T LH AA  G   +V  +++    +N               D +GNT LH A  N +  V
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDIN-------------RTDEDGNTALHIAAENGNLEV 49

Query: 138 IRILV 142
           +++L+
Sbjct: 50  LKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 13/64 (20%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
           TPLHIAA  G    V  ++K+   V+             +RD  GNT L NA++ +H ++
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVH-------------IRDANGNTALWNAISAKHHKI 606

Query: 138 IRIL 141
            RIL
Sbjct: 607 FRIL 610

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
             T LH   +    +++  +L    + I+R D      LH AA +GN+++ + LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 323 NLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVNIRAKN 360
           N  D +G TPLHLAA   H +VV  L      VN +  +
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND 39

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.96
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
PHA02741	169	hypothetical protein; Provisional	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.52
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.25
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.07
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.94
PF13606	30	Ank_3: Ankyrin repeat	98.94
PF13606	30	Ank_3: Ankyrin repeat	98.91
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.89
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.85
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.84
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.82
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.77
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.7
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.61
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.6
KOG0522	560	consensus Ankyrin repeat protein [General function	98.58
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
KOG0511	516	consensus Ankyrin repeat protein [General function	98.47
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.44
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.39
KOG2384	223	consensus Major histocompatibility complex protein	98.33
KOG2384	223	consensus Major histocompatibility complex protein	98.28
KOG0511	516	consensus Ankyrin repeat protein [General function	98.15
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.12
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.08
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.96
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.91
KOG2505	591	consensus Ankyrin repeat protein [General function	97.11
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.07
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.06
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.02
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.89
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.74
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.05
KOG2505	591	consensus Ankyrin repeat protein [General function	95.89
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.53
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.05
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	90.53
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	86.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.13
PLN03077	857	Protein ECB2; Provisional	80.42

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.3e-53  Score=401.45  Aligned_cols=339  Identities=20%  Similarity=0.237  Sum_probs=195.4

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccc-cccCCCCCCCHHHHHH---------------------------------------
Q 042906            3 QELLEVLRNGDENKIKQLALRQNI-FSTSSPGGNTVLHMAV---------------------------------------   42 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~---------------------------------------   42 (415)
                      ++||.|+..|+.|+|+.+++...+ +...|..|.||||+|+                                       
T Consensus        43 t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (682)
T PHA02876         43 TAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACI  122 (682)
T ss_pred             hHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHH
Confidence            589999999999999999998866 4566778999999766                                       


Q ss_pred             -------------------------------HhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHH
Q 042906           43 -------------------------------RFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAI   91 (415)
Q Consensus        43 -------------------------------~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~   91 (415)
                                                     ..|+.+++++|++.         +++++.+|..|.||||+|+..|+.++
T Consensus       123 ~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~---------Gadvn~~d~~G~TpLh~Aa~~G~~~i  193 (682)
T PHA02876        123 HILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG---------GADVNAKDIYCITPIHYAAERGNAKM  193 (682)
T ss_pred             HHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC---------CCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence                                           33556667777776         56677788888888888888888888


Q ss_pred             HHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc---------------------
Q 042906           92 VSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS---------------------  150 (415)
Q Consensus        92 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~---------------------  150 (415)
                      |++|+++|++++             ..+..|.||||+|+..++.+++++|++.+.+...                     
T Consensus       194 v~~LL~~Gad~n-------------~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll  260 (682)
T PHA02876        194 VNLLLSYGADVN-------------IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLY  260 (682)
T ss_pred             HHHHHHCCCCcC-------------ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHH
Confidence            888888888766             3566777888888887777777777665543321                     


Q ss_pred             -------cccccCCcHHHHHHHcCCh-hHHHHHhhhCCCCccCCCCCcchhHHHHHHHcC-CHHHHHHHHhcChhhhccc
Q 042906          151 -------YINKAYQTPLSIAIDARLN-DSACFIIDKSPESLNTTRLPDELTLLHFVVMRQ-NYDIMVKILGTNKELIDRL  221 (415)
Q Consensus       151 -------~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~  221 (415)
                             ..+..|.||||+|+..++. +++++|++.+.+....  +..|.||||.|+..| ..+.++.|+..+.+ ++..
T Consensus       261 ~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~--d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~  337 (682)
T PHA02876        261 DAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK--NIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAA  337 (682)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCc
Confidence                   2233444555555544443 3444444444332221  234445555555444 24444444444433 4444


Q ss_pred             ccCCCCHHHHHHhc-CCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 042906          222 DWHQRNPLHYAAAS-GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVA  300 (415)
Q Consensus       222 ~~~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A  300 (415)
                      +..|.||||+|+.. +..++++.|++.|++++ .++..|.||||+|+..++.+++++|++.|++ ++..+..|.||||+|
T Consensus       338 d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin-~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A  415 (682)
T PHA02876        338 DRLYITPLHQASTLDRNKDIVITLLELGANVN-ARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFA  415 (682)
T ss_pred             ccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCc-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHH
Confidence            44455555555443 23444444555444444 3444455555555555555555555555544 244444455555554


Q ss_pred             HhcCC-HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcC-ChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          301 AKHGN-WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL-HSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       301 ~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      +..++ ..++++|++.|++   +|.+|..|+||||+|+..+ +.+++++|+++ |++++.+|..|  .|||++|+.
T Consensus       416 ~~~~~~~~~vk~Ll~~gad---in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~-Gad~n~~d~~g--~tpl~~a~~  485 (682)
T PHA02876        416 LCGTNPYMSVKTLIDRGAN---VNSKNKDLSTPLHYACKKNCKLDVIEMLLDN-GADVNAINIQN--QYPLLIALE  485 (682)
T ss_pred             HHcCCHHHHHHHHHhCCCC---CCcCCCCCChHHHHHHHhCCcHHHHHHHHHC-CCCCCCCCCCC--CCHHHHHHH
Confidence            44332 2344455554444   4455555555555555433 34455555543 45555555555  555555544

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-50  Score=385.62  Aligned_cols=334  Identities=19%  Similarity=0.195  Sum_probs=290.6

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      ..++.|+..|+.++++.|++.|++++..+..|.||||+|+..|+.+++++|++.         |++++..+..|.||||+
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~---------Gad~n~~~~~g~t~L~~  217 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY---------GADVNIIALDDLSVLEC  217 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC---------CCCcCccCCCCCCHHHH
Confidence            457889999999999999999999999999999999999999999999999998         56677788999999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcc----------hhh------hhhhcccCCCChHHHHHHHcCCH-HHHHHHHhCC
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLP----------VLE------SLFRMRDIEGNTPLHNAVTNQHK-RVIRILVEKD  145 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~----------~~~------~~~~~~~~~g~t~l~~A~~~~~~-~~v~~Ll~~~  145 (415)
                      |+..|+.+++++|++.+++++......          .+.      ..++..+..|.||||+|+..++. +++++|++.|
T Consensus       218 A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g  297 (682)
T PHA02876        218 AVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG  297 (682)
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC
Confidence            999999999999999887765322100          000      12345677899999999999986 6999999999


Q ss_pred             CCCcccccccCCcHHHHHHHcC-ChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcC-CHHHHHHHHhcChhhhccccc
Q 042906          146 SVPSSYINKAYQTPLSIAIDAR-LNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQ-NYDIMVKILGTNKELIDRLDW  223 (415)
Q Consensus       146 ~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~  223 (415)
                      +++. ..+..|.||||+|+..| ..+++++|+..+.+....  +..|.||||.|+..+ +.+++..|++.+.. ++..+.
T Consensus       298 adin-~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~--d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~  373 (682)
T PHA02876        298 ADVN-AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAA--DRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDY  373 (682)
T ss_pred             CCCC-CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc--ccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCC
Confidence            9876 67889999999999999 589999999888776544  378899999999865 67777777777655 889999


Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCC-HHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 042906          224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK-LKVLKLLINKYPDAIEIRDNSDRSILHVAAK  302 (415)
Q Consensus       224 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~  302 (415)
                      .|.||||+|+..++.+++++|+++|++++ ..+..|.||||+|+..++ ..++++|+++|++ ++.+|..|+||||+|+.
T Consensus       374 ~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~-~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad-in~~d~~G~TpLh~Aa~  451 (682)
T PHA02876        374 CDKTPIHYAAVRNNVVIINTLLDYGADIE-ALSQKIGTALHFALCGTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYACK  451 (682)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCcc-ccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC-CCcCCCCCChHHHHHHH
Confidence            99999999999999999999999999988 578889999999987665 5779999999999 69999999999999999


Q ss_pred             cC-CHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcc
Q 042906          303 HG-NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR  357 (415)
Q Consensus       303 ~~-~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~  357 (415)
                      .+ +.+++++|++.|++   ++.+|..|.|||++|+..+  .+++.|+.. |+++.
T Consensus       452 ~~~~~~iv~lLl~~Gad---~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~-~a~~~  501 (682)
T PHA02876        452 KNCKLDVIEMLLDNGAD---VNAINIQNQYPLLIALEYH--GIVNILLHY-GAELR  501 (682)
T ss_pred             hCCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHhC--CHHHHHHHC-CCCCC
Confidence            76 68999999999988   9999999999999999765  689999975 88766

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.7e-50  Score=357.70  Aligned_cols=336  Identities=17%  Similarity=0.183  Sum_probs=192.6

Q ss_pred             HHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHh--CCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            5 LLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRF--RNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      ++.++..++.+.++.+++...     ...+.++||.++..  ++.+++++|++.         +++++.+|..|.||||+
T Consensus        13 l~~~~~~~n~~~~~~~l~~~~-----~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~---------Gadvn~~d~~G~TpLh~   78 (446)
T PHA02946         13 LYAKYNSKNLDVFRNMLQAIE-----PSGNYHILHAYCGIKGLDERFVEELLHR---------GYSPNETDDDGNYPLHI   78 (446)
T ss_pred             HHHHHccCcHHHHHHHHhccC-----CCCCChHHHHHHHhcCCCHHHHHHHHHC---------cCCCCccCCCCCCHHHH
Confidence            344455555555555544321     11124455544422  234555555554         33444455555555555


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcC--CHHHHHHHHhCCCCCcccccccCCcHH
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ--HKRVIRILVEKDSVPSSYINKAYQTPL  160 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~l  160 (415)
                      |+..|+.+++++|+++|++++             .+|..|.||||+|+..+  ..+++++|+++|+++....+..|.|||
T Consensus        79 Aa~~g~~eiv~lLL~~GAdin-------------~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL  145 (446)
T PHA02946         79 ASKINNNRIVAMLLTHGADPN-------------ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPL  145 (446)
T ss_pred             HHHcCCHHHHHHHHHCcCCCC-------------CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHH
Confidence            555555555555555555444             33445555555554433  245555555555544433444555555


Q ss_pred             HHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCC--HHHHHHHHhcChhhhcccccCCCCHHHHHHhcC--
Q 042906          161 SIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQN--YDIMVKILGTNKELIDRLDWHQRNPLHYAAASG--  236 (415)
Q Consensus       161 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~--  236 (415)
                      + |+..++.+++++|++.+.+....  +..|.||||.|+..++  .+++++|++.+.+ ++..|..|.||||+|+..+  
T Consensus       146 ~-aa~~~~~~vv~~Ll~~gad~~~~--d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~  221 (446)
T PHA02946        146 L-ACTDPSERVFKKIMSIGFEARIV--DKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTVK  221 (446)
T ss_pred             H-HHHCCChHHHHHHHhcccccccc--CCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCC
Confidence            4 33344555555555444333222  2345555555444332  3445555554433 4444555555555555443  


Q ss_pred             CHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCC-HHHHHHHHHhCCCc-------------------cccc-cCCCCc
Q 042906          237 NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK-LKVLKLLINKYPDA-------------------IEIR-DNSDRS  295 (415)
Q Consensus       237 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~~~~-------------------~~~~-~~~g~t  295 (415)
                      +.+++++|++ +++++ .++..|.||||+|+..++ .+++++|+++++..                   ++.. ...|.|
T Consensus       222 ~~~iv~lLl~-gadin-~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~T  299 (446)
T PHA02946        222 NVDIINLLLP-STDVN-KQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDST  299 (446)
T ss_pred             cHHHHHHHHc-CCCCC-CCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCC
Confidence            4455555443 44443 345555555555555544 24555555544321                   0011 124789


Q ss_pred             HHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       296 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      |||+|+..|+.+++++|+++|.          .|+||||+|+..++.+++++|+++ |+++|.+ ..|  .|||++|++ 
T Consensus       300 pLh~Aa~~g~~eivk~Ll~~~~----------~~~t~L~~A~~~~~~~~v~~Ll~~-ga~~n~~-~~G--~t~l~~a~~-  364 (446)
T PHA02946        300 DFKMAVEVGSIRCVKYLLDNDI----------ICEDAMYYAVLSEYETMVDYLLFN-HFSVDSV-VNG--HTCMSECVR-  364 (446)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCC----------ccccHHHHHHHhCHHHHHHHHHHC-CCCCCCc-ccc--ccHHHHHHH-
Confidence            9999999999999999999863          468999999999999999999986 9999996 579  999999999 


Q ss_pred             hhhhHHHHHHHHHHHHHHH
Q 042906          376 RADGKEIQKHLTLKALKTA  394 (415)
Q Consensus       376 ~~~~~~~~~~~~~~~L~~~  394 (415)
                            .+..++++.|+.+
T Consensus       365 ------~~~~~~~~~ll~~  377 (446)
T PHA02946        365 ------LNNPVILSKLMLH  377 (446)
T ss_pred             ------cCCHHHHHHHHhc
Confidence                  5888899999985

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-47  Score=343.51  Aligned_cols=309  Identities=19%  Similarity=0.208  Sum_probs=267.4

Q ss_pred             HHHHHH--HcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            4 ELLEVL--RNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         4 ~L~~A~--~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      .||.++  ..++.++++.|++.|++++.++..|.||||+|+..|+.+++++|++.         +++++.+|..|.||||
T Consensus        40 ~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~---------GAdin~~d~~g~TpLh  110 (446)
T PHA02946         40 ILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTH---------GADPNACDKQHKTPLY  110 (446)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC---------cCCCCCCCCCCCCHHH
Confidence            455544  45578999999999999999999999999999999999999999998         5778889999999999


Q ss_pred             HHHHhC--cHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcH
Q 042906           82 IAARIG--NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP  159 (415)
Q Consensus        82 ~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  159 (415)
                      +|+..+  ..+++++|+++|++++.            ..|..|.|||| |+..++.+++++|++.|++.. ..+..|.||
T Consensus       111 ~A~~~~~~~~e~v~lLl~~Gadin~------------~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~t~  176 (446)
T PHA02946        111 YLSGTDDEVIERINLLVQYGAKINN------------SVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGKNH  176 (446)
T ss_pred             HHHHcCCchHHHHHHHHHcCCCccc------------ccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCCCH
Confidence            999876  48999999999998873            25778999997 667799999999999999876 788999999


Q ss_pred             HHHHHHcCC--hhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcC--CHHHHHHHHhcChhhhcccccCCCCHHHHHHhc
Q 042906          160 LSIAIDARL--NDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQ--NYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (415)
Q Consensus       160 l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  235 (415)
                      ||+|+..++  .+++++|++.+.+....  +..|.||||+|+..+  +.++++.|+. + ..++..+..|.||||+|+..
T Consensus       177 Lh~A~~~~~~~~~~v~~Ll~~Gadin~~--d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        177 IHRHLMSDNPKASTISWMMKLGISPSKP--DHDGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHh
Confidence            999987655  58999999988766543  378999999999986  7888888885 4 45899999999999999999


Q ss_pred             CC-HHHHHHHHHhchhh--------------------hhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCC
Q 042906          236 GN-VKMAQRLLEESKQL--------------------AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDR  294 (415)
Q Consensus       236 ~~-~~~~~~Ll~~~~~~--------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  294 (415)
                      ++ .+++++|+++|+..                    +......|.||||+|+..|+.+++++|+++++        .|+
T Consensus       253 ~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~  324 (446)
T PHA02946        253 LSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICE  324 (446)
T ss_pred             CChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccc
Confidence            88 58999999987532                    11112357799999999999999999999864        468


Q ss_pred             cHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          295 SILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       295 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      ||||+|+..++.+++++|+.+|++   ++.+ ..|.||||+|+..++.++++.|+++
T Consensus       325 t~L~~A~~~~~~~~v~~Ll~~ga~---~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~  377 (446)
T PHA02946        325 DAMYYAVLSEYETMVDYLLFNHFS---VDSV-VNGHTCMSECVRLNNPVILSKLMLH  377 (446)
T ss_pred             cHHHHHHHhCHHHHHHHHHHCCCC---CCCc-cccccHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999999999999988   7875 5899999999999999999999985

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-47  Score=345.50  Aligned_cols=370  Identities=13%  Similarity=0.115  Sum_probs=295.5

Q ss_pred             hHHHHHHHcC---ChhHHHHHHhhccccccCCCCCCCHHHHHHHhC--CHHHHHHHHhccchHHHHHHhHhhhcCCCCCC
Q 042906            3 QELLEVLRNG---DENKIKQLALRQNIFSTSSPGGNTVLHMAVRFR--NQQVIREILRQQNFIALRLHYSLLRQKNLMDE   77 (415)
Q Consensus         3 ~~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~   77 (415)
                      ++||.|+..|   +.++++.||++|++++.+|..|+||||+|+..+  +.+++++|++.|+       ++..+..+..+.
T Consensus        43 TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~-------~~~~~~~~~~~d  115 (672)
T PHA02730         43 NALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYS-------NASNELTSNIND  115 (672)
T ss_pred             cHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCC-------CCCcccccccCC
Confidence            6899999997   599999999999999999999999999999977  7999999999864       345566777789


Q ss_pred             ChHHHHHH--hCcHHHHHHHHh-hccccccCCCcchhhhhhhcc-cCCCChHHHHHHHcCCHHHHHHHHhCCCCCccc--
Q 042906           78 TPLHIAAR--IGNRAIVSEIVK-YVPAVNQAGPLPVLESLFRMR-DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSY--  151 (415)
Q Consensus        78 t~L~~A~~--~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~-~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~--  151 (415)
                      +||+.++.  +++.+++++|+. .+.+++..         .+.. +..|.+|++++...++.++|++|++.|+++...  
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~---------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~  186 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN---------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVF  186 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhh---------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccc
Confidence            99998888  889999999996 66676631         0011 137899999999999999999999999988421  


Q ss_pred             -----ccccCCcHHHHH------HHcCChhHHHHHhhhCCCCccCCCCCcchhHHHH--HHHcCCHHHHHHHHh------
Q 042906          152 -----INKAYQTPLSIA------IDARLNDSACFIIDKSPESLNTTRLPDELTLLHF--VVMRQNYDIMVKILG------  212 (415)
Q Consensus       152 -----~~~~~~~~l~~a------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~--a~~~~~~~~~~~ll~------  212 (415)
                           ......+.|+++      ...++.+++++|++++.+.....  ..|.||||+  +...++.+++++|++      
T Consensus       187 ~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd--~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~  264 (672)
T PHA02730        187 RSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD--EGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCS  264 (672)
T ss_pred             ccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHcCcccHHHHHHHHhcccccc
Confidence                 222233445533      34578999999999998765444  799999995  445567999999998      


Q ss_pred             --------------------------cChhhhcc--------------------cccCCCC-------------------
Q 042906          213 --------------------------TNKELIDR--------------------LDWHQRN-------------------  227 (415)
Q Consensus       213 --------------------------~~~~~~~~--------------------~~~~~~t-------------------  227 (415)
                                                .+.+ ...                    .+..|.+                   
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~  343 (672)
T PHA02730        265 VYDDISQPYIRGVLADYLNKRFRVTPYNVD-MEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIV  343 (672)
T ss_pred             ccccccchhhhhhHHHhhhhhhhcccCCcc-hHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHH
Confidence                                      2322 111                    3344433                   


Q ss_pred             --HHHHHHhcC---CHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCC----HHHHHHHHHhCCC-ccccccCCCCcHH
Q 042906          228 --PLHYAAASG---NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK----LKVLKLLINKYPD-AIEIRDNSDRSIL  297 (415)
Q Consensus       228 --~l~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~-~~~~~~~~g~t~l  297 (415)
                        .|+.-...+   +.+++++|+++|++++.  +..|.||||+|+..++    .+++++|+++|++ +++.+|..|.|||
T Consensus       344 q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~--k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~L  421 (672)
T PHA02730        344 QAMLINYLHYGDMVSIPILRCMLDNGATMDK--TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCM  421 (672)
T ss_pred             HHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc--CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchH
Confidence              566666655   69999999999999983  4789999999988875    8999999999983 3689999999999


Q ss_pred             HH---HHhcC---------CHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccc-ccc
Q 042906          298 HV---AAKHG---------NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR-SAR  364 (415)
Q Consensus       298 ~~---A~~~~---------~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~-~g~  364 (415)
                      |.   |...+         ..+++++|+++|++   +|.+|..|+||||+|+..++.+++++|+++ |++++.+|. .| 
T Consensus       422 h~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD---INakD~~G~TPLh~Aa~~~~~eive~LI~~-GAdIN~~d~~~g-  496 (672)
T PHA02730        422 YGLILSRFNNCGYHCYETILIDVFDILSKYMDD---IDMIDNENKTLLYYAVDVNNIQFARRLLEY-GASVNTTSRSII-  496 (672)
T ss_pred             hHHHHHHhccccccccchhHHHHHHHHHhcccc---hhccCCCCCCHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCcCC-
Confidence            84   33332         23579999999998   999999999999999999999999999986 999999997 59 


Q ss_pred             cchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHHH
Q 042906          365 NNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEE  404 (415)
Q Consensus       365 ~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~~  404 (415)
                       .||||+|+..     ..++.+++++|+++||+...-.+.
T Consensus       497 -~TaL~~Aa~~-----~~~~~eIv~~LLs~ga~i~~I~~T  530 (672)
T PHA02730        497 -NTAIQKSSYR-----RENKTKLVDLLLSYHPTLETMIDA  530 (672)
T ss_pred             -cCHHHHHHHh-----hcCcHHHHHHHHHcCCCHHHHHHH
Confidence             9999999872     114678999999999986544443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=7.9e-49  Score=345.79  Aligned_cols=336  Identities=25%  Similarity=0.329  Sum_probs=295.1

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      ..+|.|++.+.+      +..-......|..|.+|||+|+..+..+.+++|++.         |++.+..+..+.+|+|+
T Consensus        63 ~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~---------gad~~~~n~~~~aplh~  127 (929)
T KOG0510|consen   63 TELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSY---------GADTPLRNLNKNAPLHL  127 (929)
T ss_pred             hHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhc---------CCCCChhhhhccCchhh
Confidence            455566665544      333345566778899999999999999999999998         56677788899999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHH
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~  162 (415)
                      |+..|+.++.+.|+++|++++             ..|..|.||||.|+..++.|..+.|++.|+++. ..+..|..|+|.
T Consensus       128 A~~~~~~s~L~~Ll~~~~dvn-------------l~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~  193 (929)
T KOG0510|consen  128 AADSGNYSCLKLLLDYGADVN-------------LEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHE  193 (929)
T ss_pred             ccccchHHHHHHHHHhcCCcc-------------ccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHH
Confidence            999999999999999999887             678899999999999999998899999999886 789999999999


Q ss_pred             HHHcCChhHHHHHhhhCC---CCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChh--------------hhcccccCC
Q 042906          163 AIDARLNDSACFIIDKSP---ESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKE--------------LIDRLDWHQ  225 (415)
Q Consensus       163 a~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--------------~~~~~~~~~  225 (415)
                      |++.+..++.+.++...+   .......+..+.+|||.|+..|+.++++.+|+.+..              .++..|.+|
T Consensus       194 aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg  273 (929)
T KOG0510|consen  194 AARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDG  273 (929)
T ss_pred             HHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccC
Confidence            999999999999998322   222334457888999999999999999999987743              255668899


Q ss_pred             CCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHH-hCCCccccccCCCCcHHHHHHhcC
Q 042906          226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN-KYPDAIEIRDNSDRSILHVAAKHG  304 (415)
Q Consensus       226 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~  304 (415)
                      .||||+|++.|.++.++.|+..|++++ .++.++.||||.|+.+|++..++.||+ .+...++..|..|.||||.|++.|
T Consensus       274 ~tpLH~a~r~G~~~svd~Ll~~Ga~I~-~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g  352 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDNLLGFGASIN-SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG  352 (929)
T ss_pred             CchHHHHHHcCChhHHHHHHHcCCccc-ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC
Confidence            999999999999999999999999999 688999999999999999999999999 555567889999999999999999


Q ss_pred             CHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHH
Q 042906          305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI  371 (415)
Q Consensus       305 ~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~  371 (415)
                      +..+++.|+++|+........|.+|.||||+|+..|+..++++|+++ |+++..+|..|  .|++++
T Consensus       353 H~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~~g--~SA~~~  416 (929)
T KOG0510|consen  353 HDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNKKG--KSAFDT  416 (929)
T ss_pred             HHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccccc--cccccc
Confidence            99999999999988432225699999999999999999999999997 99999999999  999994

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-48  Score=342.91  Aligned_cols=362  Identities=23%  Similarity=0.265  Sum_probs=314.6

Q ss_pred             HHHHHcCChh-HHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHH
Q 042906            6 LEVLRNGDEN-KIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAA   84 (415)
Q Consensus         6 ~~A~~~g~~~-~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~   84 (415)
                      ..++..+..+ ....+++........+..|.|++|.|+..+..      ++.         -......|..|.||||+|+
T Consensus        32 ~~~~~~~~~dD~~tli~~kns~~~~~~~~gd~~~~~~~~~~y~------~~~---------~~~~~a~D~~~n~~l~~a~   96 (929)
T KOG0510|consen   32 DSQALADTLDDRHTLILEKNSSTPGKRAFGDTELHHASARNYI------LSK---------LAISYAKDSADNTPLHAAV   96 (929)
T ss_pred             hHHHHHhhHHHHHHHHHHhccccchhhhhchhHHHHHHhhcch------hhh---------hhhhhhhhcccCchhHHHh
Confidence            3344444333 44555556677777888899999999999866      222         3556678899999999999


Q ss_pred             HhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHH
Q 042906           85 RIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI  164 (415)
Q Consensus        85 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~  164 (415)
                      .....+.+++|++.|++..             ..+..+.+|+|+|+..++.+.++.|+++|++++ ..+..+.||||.|+
T Consensus        97 ~~~~~~~i~~Lls~gad~~-------------~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvn-l~de~~~TpLh~A~  162 (929)
T KOG0510|consen   97 EYNQGDKIQVLLSYGADTP-------------LRNLNKNAPLHLAADSGNYSCLKLLLDYGADVN-LEDENGFTPLHLAA  162 (929)
T ss_pred             hcchHHHHHHHHhcCCCCC-------------hhhhhccCchhhccccchHHHHHHHHHhcCCcc-ccccCCCchhhHHH
Confidence            9999999999999999877             568899999999999999999999999998886 78999999999999


Q ss_pred             HcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcCh----hhhcccccCCCCHHHHHHhcCCHHH
Q 042906          165 DARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNK----ELIDRLDWHQRNPLHYAAASGNVKM  240 (415)
Q Consensus       165 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~t~l~~a~~~~~~~~  240 (415)
                      ..++.+..+.|++.+.+.....  ..+++|+|.|+.+|..++++.++...+    ..++..+..+.+|||.|+..|+.++
T Consensus       163 ~~~~~E~~k~Li~~~a~~~K~~--~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~  240 (929)
T KOG0510|consen  163 RKNKVEAKKELINKGADPCKSD--IDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEM  240 (929)
T ss_pred             hcChHHHHHHHHhcCCCCCccc--CcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHH
Confidence            9999998899998887765444  789999999999999999999998332    2377788899999999999999999


Q ss_pred             HHHHHHhchhhhh--------------ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH
Q 042906          241 AQRLLEESKQLAY--------------KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW  306 (415)
Q Consensus       241 ~~~Ll~~~~~~~~--------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  306 (415)
                      ++.+++.+..+..              ..|.+|.||||+|++.|+.++++.|+..|++ ++.++.++.||||.|+.+|+.
T Consensus       241 lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~  319 (929)
T KOG0510|consen  241 LKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRI  319 (929)
T ss_pred             HHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccH
Confidence            9999998764322              3688999999999999999999999999999 699999999999999999999


Q ss_pred             HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcc---ccccccccchhHHHHHHhhhhhHHHH
Q 042906          307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR---AKNRSARNNIALEIAEITRADGKEIQ  383 (415)
Q Consensus       307 ~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~---~~d~~g~~~t~l~~a~~~~~~~~~~~  383 (415)
                      ..++-||+ ..+..++|..|..|.||||+|+++|+.++++.||.. |++..   ..|++|  .||||+|+.       ++
T Consensus       320 ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~dg--~TaLH~Aa~-------~g  388 (929)
T KOG0510|consen  320 NTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADSDG--NTALHLAAK-------YG  388 (929)
T ss_pred             HHHHHHHh-CcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-ChhhhcccccccCC--chhhhHHHH-------hc
Confidence            99999999 334456899999999999999999999999999975 88877   569999  999999999       69


Q ss_pred             HHHHHHHHHHHHHHHhhcHHHHHHHHh
Q 042906          384 KHLTLKALKTAYAKRALSAEELQQKRQ  410 (415)
Q Consensus       384 ~~~~~~~L~~~Ga~~~~~~~~~~~~~~  410 (415)
                      +...+++|+.+||+....++.+.++.+
T Consensus       389 ~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  389 NTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             cHHHHHHHHHcCCceeecccccccccc
Confidence            999999999999999888888777665

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8.7e-48  Score=353.55  Aligned_cols=355  Identities=15%  Similarity=0.145  Sum_probs=274.1

Q ss_pred             HcCChhHHHHHHhhc-cccccC-CCCCCCHHHHHHH--hCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHH
Q 042906           10 RNGDENKIKQLALRQ-NIFSTS-SPGGNTVLHMAVR--FRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR   85 (415)
Q Consensus        10 ~~g~~~~v~~ll~~~-~~~~~~-~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~   85 (415)
                      +.++++++++|++.| ++++.. +..|.||||+|+.  +++.+++++|++.         |++++.+|..|.||||+|+.
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~---------GADVN~kD~~G~TPLH~Aa~  221 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN---------GVNVNLQNNHLITPLHTYLI  221 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc---------CCCCCCCCCCCCCHHHHHHH
Confidence            468999999999999 999988 8889999998865  4678999999997         67788899999999999999


Q ss_pred             hCc--HHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHH---HcCCHHHHHHHHhCCCCCcccccccCCcHH
Q 042906           86 IGN--RAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV---TNQHKRVIRILVEKDSVPSSYINKAYQTPL  160 (415)
Q Consensus        86 ~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l  160 (415)
                      .|+  .++|++|+++|++++             .+|..|.||||+|+   ..++.++++.|++.+.... .  .....++
T Consensus       222 ~g~~~~eIVklLLe~GADVN-------------~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~-~--~~~~~~L  285 (764)
T PHA02716        222 TGNVCASVIKKIIELGGDMD-------------MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK-V--KNIPMIL  285 (764)
T ss_pred             cCCCCHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc-c--ccchhhh
Confidence            985  589999999999887             56889999999886   4678999999988653321 1  1112233


Q ss_pred             H---HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHH--cCCHHHHHHHHhcChhhhcccccCCCCHHHHHHh-
Q 042906          161 S---IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVM--RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAA-  234 (415)
Q Consensus       161 ~---~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~-  234 (415)
                      +   .|+..++.+++++|++.+.+...  .+..|.||||+|+.  .++.+++++|++.+.+ ++.++..|.||||+|+. 
T Consensus       286 ~~~i~AA~~g~leiVklLLe~GAdIN~--kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        286 HSYITLARNIDISVVYSFLQPGVKLHY--KDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCCceec--cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHh
Confidence            3   46788999999999998876543  34789999998764  4578999999988865 88889999999998865 


Q ss_pred             -------------cCCHHHHHHHHHhchhhhhccCCCCCCHHHH----HHHcCCHHHHHHHHHhCCCccccc--------
Q 042906          235 -------------SGNVKMAQRLLEESKQLAYKRDCNGETPLHL----AAENGKLKVLKLLINKYPDAIEIR--------  289 (415)
Q Consensus       235 -------------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~----A~~~~~~~~v~~Ll~~~~~~~~~~--------  289 (415)
                                   .++.+++++|+++|++++ ..+..|.||||.    |...++.+++++|++.+... ...        
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~GADIn-~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~-~~~~~~~q~ll  440 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISLGADIT-AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLN-MVKHRILQDLL  440 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHCCCCCC-CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchh-hhhhhhhhhhh
Confidence                         368899999999999987 688999999984    23357789999999987541 111        


Q ss_pred             cCCCCcH--HHHHHhcCCHHHHHHH------------------hhCCCcccccccCCCCCCcHHHHHHhcCChH-----H
Q 042906          290 DNSDRSI--LHVAAKHGNWNIVSFI------------------LKSPEMENLINLVDRNGNTPLHLAAMGLHSD-----V  344 (415)
Q Consensus       290 ~~~g~t~--l~~A~~~~~~~~~~~L------------------l~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~-----~  344 (415)
                      +..+.++  +|.++..+..+...++                  +..+.   .++..|..|+||||+|+..|+.+     +
T Consensus       441 ~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~---nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~  517 (764)
T PHA02716        441 IRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERY---NNAVCETSGMTPLHVSIISHTNANIVMDS  517 (764)
T ss_pred             hccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhc---cccccCCCCCCHHHHHHHcCCccchhHHH
Confidence            1122333  5556655443333222                  22222   26888999999999999998874     4


Q ss_pred             HHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906          345 VFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSA  402 (415)
Q Consensus       345 ~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~  402 (415)
                      +++|++. |+|+|.+|.+|  +||||+|++.-.  .+....+|+++|+++||+++...
T Consensus       518 ~k~LL~~-GADIN~~d~~G--~TPLh~A~~~g~--~~~~~~eIvk~LL~~ga~~~~~~  570 (764)
T PHA02716        518 FVYLLSI-QYNINIPTKNG--VTPLMLTMRNNR--LSGHQWYIVKNILDKRPNVDIVI  570 (764)
T ss_pred             HHHHHhC-CCCCcccCCCC--CCHHHHHHHcCC--ccccHHHHHHHHHhcCCCcchHH
Confidence            5999986 99999999999  999999999310  00113489999999999876653

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-47  Score=343.46  Aligned_cols=365  Identities=17%  Similarity=0.142  Sum_probs=289.9

Q ss_pred             hhHHHHHHhhccccc-cCCCCCCCHHHHHHHhC---CHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhC--
Q 042906           14 ENKIKQLALRQNIFS-TSSPGGNTVLHMAVRFR---NQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIG--   87 (415)
Q Consensus        14 ~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--   87 (415)
                      ...++..++.-.+++ ..|..|+||||+|+..|   +.+++++|++.         |++++.+|..|+||||+|+..+  
T Consensus        20 ~~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~---------GAdin~kD~~G~TPLh~Aa~~~~~   90 (672)
T PHA02730         20 YKKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR---------GVERLCRNNEGLTPLGVYSKRKYV   90 (672)
T ss_pred             HHHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC---------CCCCcccCCCCCChHHHHHHcCCC
Confidence            345677777776777 88889999999999997   59999999997         6778899999999999999977  


Q ss_pred             cHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHH--cCCHHHHHHHHh-CCCCCccccc----ccCCcHH
Q 042906           88 NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT--NQHKRVIRILVE-KDSVPSSYIN----KAYQTPL  160 (415)
Q Consensus        88 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~--~~~~~~v~~Ll~-~~~~~~~~~~----~~~~~~l  160 (415)
                      +.++|++|++.|++++           .+..+..+.+||+.++.  +++.+++++|++ .+.++....+    ..|.+|+
T Consensus        91 ~~eIv~~Ll~~~~~~~-----------~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~  159 (672)
T PHA02730         91 KSQIVHLLISSYSNAS-----------NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDI  159 (672)
T ss_pred             cHHHHHHHHhcCCCCC-----------cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhh
Confidence            7999999999987654           22456678899998888  899999999997 5556543322    3789999


Q ss_pred             HHHHHcCChhHHHHHhhhCCCCc-c-----CCCCCcchhHHHHH------HHcCCHHHHHHHHhcChhhhcccccCCCCH
Q 042906          161 SIAIDARLNDSACFIIDKSPESL-N-----TTRLPDELTLLHFV------VMRQNYDIMVKILGTNKELIDRLDWHQRNP  228 (415)
Q Consensus       161 ~~a~~~~~~~~~~~ll~~~~~~~-~-----~~~~~~~~~~l~~a------~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  228 (415)
                      +++...++.+++++|++.+.... .     ........+.|++.      ...++.++++.|++.|.+ ++.++..|.||
T Consensus       160 yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~Tp  238 (672)
T PHA02730        160 YVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLP  238 (672)
T ss_pred             hHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            99999999999999999988773 1     12223334555533      345789999999999976 89999999999


Q ss_pred             HHH--HHhcCCHHHHHHHHH--------------------------------hchhhhh-------------------cc
Q 042906          229 LHY--AAASGNVKMAQRLLE--------------------------------ESKQLAY-------------------KR  255 (415)
Q Consensus       229 l~~--a~~~~~~~~~~~Ll~--------------------------------~~~~~~~-------------------~~  255 (415)
                      ||+  +...++.+++++|++                                +|.+...                   ..
T Consensus       239 Lh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  318 (672)
T PHA02730        239 IQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSY  318 (672)
T ss_pred             HHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccc
Confidence            995  555677999999999                                5555421                   03


Q ss_pred             CCCCCC---------------------HHHHHHHcC---CHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC----HH
Q 042906          256 DCNGET---------------------PLHLAAENG---KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN----WN  307 (415)
Q Consensus       256 ~~~g~t---------------------~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~----~~  307 (415)
                      +..|.+                     .|+.=..++   +.+++++|+++|++ ++.. ..|.||||+|+..++    .+
T Consensus       319 ~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAd-IN~k-~~G~TpLH~Aa~~nnn~i~~e  396 (672)
T PHA02730        319 DSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGAT-MDKT-TDNNYPLHDYFVNNNNIVDVN  396 (672)
T ss_pred             cccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCC-CCcC-CCCCcHHHHHHHHcCCcchHH
Confidence            444543                     455555544   69999999999999 5875 789999999998775    89


Q ss_pred             HHHHHhhCCCcccccccCCCCCCcHHHH---HHhcC---------ChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          308 IVSFILKSPEMENLINLVDRNGNTPLHL---AAMGL---------HSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       308 ~~~~Ll~~~~~~~~~~~~~~~g~t~l~~---A~~~~---------~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      ++++|+++|+. .+++.+|..|+||||.   |...+         ..+++++|+++ |+|+|++|..|  +||||+|+. 
T Consensus       397 IvelLIs~Ga~-~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~-GADINakD~~G--~TPLh~Aa~-  471 (672)
T PHA02730        397 VVRFIVENNGH-MAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY-MDDIDMIDNEN--KTLLYYAVD-  471 (672)
T ss_pred             HHHHHHHcCCC-ccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc-ccchhccCCCC--CCHHHHHHH-
Confidence            99999999873 2288999999999984   33332         23569999986 99999999999  999999999 


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhcHH-HHHHHHhhh
Q 042906          376 RADGKEIQKHLTLKALKTAYAKRALSAE-ELQQKRQVS  412 (415)
Q Consensus       376 ~~~~~~~~~~~~~~~L~~~Ga~~~~~~~-~~~~~~~~~  412 (415)
                            .+..+++++|+++||+++..+. .+..+.+.+
T Consensus       472 ------~~~~eive~LI~~GAdIN~~d~~~g~TaL~~A  503 (672)
T PHA02730        472 ------VNNIQFARRLLEYGASVNTTSRSIINTAIQKS  503 (672)
T ss_pred             ------hCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHH
Confidence                  5778899999999999988875 355555443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-46  Score=338.10  Aligned_cols=310  Identities=23%  Similarity=0.276  Sum_probs=272.8

Q ss_pred             HHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhh
Q 042906           37 VLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFR  116 (415)
Q Consensus        37 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  116 (415)
                      .|..|+..|+++.++.|++.        .+..++..+..|.||||.|+..|+.++|++|+++|++++             
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~--------~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n-------------   62 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKN--------KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADIN-------------   62 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHc--------CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-------------
Confidence            58899999999999999987        356677788899999999999999999999999999877             


Q ss_pred             cccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHH
Q 042906          117 MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH  196 (415)
Q Consensus       117 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~  196 (415)
                      ..+..|.||||.|+..|+.+++++|++.|++....           +......++++++++.+.+....  +..|.||||
T Consensus        63 ~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~-----------~~~~~~~~~i~~ll~~g~d~n~~--~~~g~T~Lh  129 (434)
T PHA02874         63 HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL-----------PIPCIEKDMIKTILDCGIDVNIK--DAELKTFLH  129 (434)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc-----------hhccCCHHHHHHHHHCcCCCCCC--CCCCccHHH
Confidence            45778999999999999999999999999865321           22345678999999888765543  478899999


Q ss_pred             HHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHH
Q 042906          197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLK  276 (415)
Q Consensus       197 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  276 (415)
                      .|+..|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|+++|++++ ..+..|.||||+|+..|+.++++
T Consensus       130 ~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~g~~~iv~  207 (434)
T PHA02874        130 YAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN-VKDNNGESPLHNAAEYGDYACIK  207 (434)
T ss_pred             HHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999998876 78889999999999999999999999999999887 57889999999999999999999


Q ss_pred             HHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcC-ChHHHHHHhhccCcC
Q 042906          277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL-HSDVVFTLSRHKSVN  355 (415)
Q Consensus       277 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~g~~  355 (415)
                      +|++.|++ ++.++..|.||||+|+..+. +.+++|+ .+++   ++.+|..|+||||+|+..+ +.+++++|+++ |++
T Consensus       208 ~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~---in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~-gad  280 (434)
T PHA02874        208 LLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLI-NNAS---INDQDIDGSTPLHHAINPPCDIDIIDILLYH-KAD  280 (434)
T ss_pred             HHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC---CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC-cCC
Confidence            99999998 58999999999999999865 5667776 4555   8999999999999999875 78999999986 999


Q ss_pred             ccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          356 IRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       356 ~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      ++.+|..|  .|||++|+++      .....+++.|+..++.
T Consensus       281 ~n~~d~~g--~TpL~~A~~~------~~~~~~ik~ll~~~~~  314 (434)
T PHA02874        281 ISIKDNKG--ENPIDTAFKY------INKDPVIKDIIANAVL  314 (434)
T ss_pred             CCCCCCCC--CCHHHHHHHh------CCccHHHHHHHHhcCc
Confidence            99999999  9999999984      1256688899988865

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=333.89  Aligned_cols=328  Identities=20%  Similarity=0.248  Sum_probs=284.3

Q ss_pred             CChHHHHHHHcCChhHHHHHHhhc-cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCCh
Q 042906            1 MDQELLEVLRNGDENKIKQLALRQ-NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETP   79 (415)
Q Consensus         1 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~   79 (415)
                      |+..|..|+..|+++.++.+++.+ ..++..+..|.||||.|+..|+.+++++|++.         |++++..+..|.||
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~---------Ga~~n~~~~~~~t~   71 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKH---------GADINHINTKIPHP   71 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC---------CCCCCCCCCCCCCH
Confidence            577899999999999999999865 55778888999999999999999999999998         56778889999999


Q ss_pred             HHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcH
Q 042906           80 LHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP  159 (415)
Q Consensus        80 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  159 (415)
                      ||+|+..|+.+++++|+++|+++..                       .+....+.+++++|++.|+++. ..+..|.||
T Consensus        72 L~~A~~~~~~~iv~~Ll~~g~~~~~-----------------------~~~~~~~~~~i~~ll~~g~d~n-~~~~~g~T~  127 (434)
T PHA02874         72 LLTAIKIGAHDIIKLLIDNGVDTSI-----------------------LPIPCIEKDMIKTILDCGIDVN-IKDAELKTF  127 (434)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCc-----------------------chhccCCHHHHHHHHHCcCCCC-CCCCCCccH
Confidence            9999999999999999999886431                       1223456899999999999876 678899999


Q ss_pred             HHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHH
Q 042906          160 LSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK  239 (415)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  239 (415)
                      ||+|+..++.+++++|++.+.+....  +..|.||||+|+..++.+++++|++.+.. ++..+..|.||||.|+..|+.+
T Consensus       128 Lh~A~~~~~~~~v~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~  204 (434)
T PHA02874        128 LHYAIKKGDLESIKMLFEYGADVNIE--DDNGCYPIHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDYA  204 (434)
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999988766543  37889999999999999999999998875 7788899999999999999999


Q ss_pred             HHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcC-CHHHHHHHhhCCCc
Q 042906          240 MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG-NWNIVSFILKSPEM  318 (415)
Q Consensus       240 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~~~  318 (415)
                      ++++|++.|+++. ..+..|.||||.|+..+. +.+++|+ .+++ ++.+|..|+||||+|+..+ +.+++++|+++|++
T Consensus       205 iv~~Ll~~g~~i~-~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad  280 (434)
T PHA02874        205 CIKLLIDHGNHIM-NKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD  280 (434)
T ss_pred             HHHHHHhCCCCCc-CCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC
Confidence            9999999999887 578899999999999865 5677776 4677 6999999999999999875 78999999999988


Q ss_pred             ccccccCCCCCCcHHHHHHhcC-ChHHHHHHhhccCcCccccccccccchhHHHHH
Q 042906          319 ENLINLVDRNGNTPLHLAAMGL-HSDVVFTLSRHKSVNIRAKNRSARNNIALEIAE  373 (415)
Q Consensus       319 ~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~  373 (415)
                         ++.+|..|+|||++|+..+ +.++++.|+.+ ++.++..+..+. .+++..+.
T Consensus       281 ---~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~-~~~~~~~~~~~~-~~~~~~~~  331 (434)
T PHA02874        281 ---ISIKDNKGENPIDTAFKYINKDPVIKDIIAN-AVLIKEADKLKD-SDFLEHIE  331 (434)
T ss_pred             ---CCCCCCCCCCHHHHHHHhCCccHHHHHHHHh-cCchhhccccch-hHHHHHHH
Confidence               9999999999999999987 67889999986 777766655541 44455443

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-45  Score=339.74  Aligned_cols=379  Identities=16%  Similarity=0.071  Sum_probs=289.4

Q ss_pred             hHHHHHHHc---CChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHH----HHHHHHhccch----------------
Q 042906            3 QELLEVLRN---GDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQ----VIREILRQQNF----------------   59 (415)
Q Consensus         3 ~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~~~~----------------   59 (415)
                      ++||.|+..   |+.++++.|++.|++++..+..|.||||+|+..|+.+    +++.|++.+..                
T Consensus        34 t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~  113 (661)
T PHA02917         34 NALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKN  113 (661)
T ss_pred             cHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhc
Confidence            679987555   8899999999999999999999999999999998854    45677765321                


Q ss_pred             --H----HHHHHhHhhhcCCCCCCChHHHHH--HhCcHHHHHHHHhhccccccCCCcchhh-hhhhcccCCCChHHHHHH
Q 042906           60 --I----ALRLHYSLLRQKNLMDETPLHIAA--RIGNRAIVSEIVKYVPAVNQAGPLPVLE-SLFRMRDIEGNTPLHNAV  130 (415)
Q Consensus        60 --~----~~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~~~~~~~~~g~t~l~~A~  130 (415)
                        .    -+...|++++.+|..|+||||+|+  ..|+.+++++|+++|++++..+...... .........+.||||+|+
T Consensus       114 ~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~  193 (661)
T PHA02917        114 VDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYI  193 (661)
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHH
Confidence              0    022357889999999999999654  5789999999999999986321100000 000011223469999998


Q ss_pred             H-----------cCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCCh--hHHHHHhhhCCCCcc--CCCCCcchhHH
Q 042906          131 T-----------NQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN--DSACFIIDKSPESLN--TTRLPDELTLL  195 (415)
Q Consensus       131 ~-----------~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~ll~~~~~~~~--~~~~~~~~~~l  195 (415)
                      .           .++.+++++|++.|+++. ..+..|.||||+|+..++.  +++++|++ +.+...  ...+..+.+++
T Consensus       194 ~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn-~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~  271 (661)
T PHA02917        194 ISHLYSESDTRAYVRPEVVKCLINHGIKPS-SIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRG  271 (661)
T ss_pred             hhcccccccccccCcHHHHHHHHHCCCCcc-cCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccch
Confidence            6           468999999999999886 7889999999999999986  79999974 544322  12335667788


Q ss_pred             HHHHH-------c--CCHHHHHHHHhcChhhh------ccc------------ccCCCCHHHH---HHhcCC--HHHHHH
Q 042906          196 HFVVM-------R--QNYDIMVKILGTNKELI------DRL------------DWHQRNPLHY---AAASGN--VKMAQR  243 (415)
Q Consensus       196 ~~a~~-------~--~~~~~~~~ll~~~~~~~------~~~------------~~~~~t~l~~---a~~~~~--~~~~~~  243 (415)
                      +.|+.       .  .+.++++.|++.+....      +..            ...+.+++|.   ++..|.  .+++++
T Consensus       272 ~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~  351 (661)
T PHA02917        272 IMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVEC  351 (661)
T ss_pred             HHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHH
Confidence            88873       1  17789999999985421      111            1122334443   334665  569999


Q ss_pred             HHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHH-hCCCccccccCCCCcHHHHHHhcC------------------
Q 042906          244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN-KYPDAIEIRDNSDRSILHVAAKHG------------------  304 (415)
Q Consensus       244 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~------------------  304 (415)
                      |++.|++++ .++..|.++.    .....+++++|+. .|++. +..+..|.||||.|++.+                  
T Consensus       352 Ll~~GAdvn-~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~-~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~  425 (661)
T PHA02917        352 MLEYGAVVN-KEAIHGYFRN----INIDSYTMKYLLKKEGGDA-VNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDM  425 (661)
T ss_pred             HHHcCCCCC-CCCccccchh----hcCCHHHHHHHHHhcCCCc-cccCCCCCChhHHHHHhcccchhhhhhhhhhccchh
Confidence            999999998 5788888754    3667889999997 47764 555667999999987543                  


Q ss_pred             -----CHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhh
Q 042906          305 -----NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADG  379 (415)
Q Consensus       305 -----~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~  379 (415)
                           ..+++++|+++|++   +|.+|..|+||||+|+..++.+++++|+++ |++++.+|..|  +|||++|+..    
T Consensus       426 ~~~~~~~~~v~~Ll~~GAd---IN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~-GAdin~~d~~G--~T~L~~A~~~----  495 (661)
T PHA02917        426 SYACPILSTINICLPYLKD---INMIDKRGETLLHKAVRYNKQSLVSLLLES-GSDVNIRSNNG--YTCIAIAINE----  495 (661)
T ss_pred             hhhhhhHHHHHHHHHCCCC---CCCCCCCCcCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCC--CCHHHHHHHh----
Confidence                 35678999999988   999999999999999999999999999986 99999999999  9999999951    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q 042906          380 KEIQKHLTLKALKTAYAKRALS  401 (415)
Q Consensus       380 ~~~~~~~~~~~L~~~Ga~~~~~  401 (415)
                        .+..+++++|+.+|++++.-
T Consensus       496 --~~~~~iv~~LL~~ga~i~~i  515 (661)
T PHA02917        496 --SRNIELLKMLLCHKPTLDCV  515 (661)
T ss_pred             --CCCHHHHHHHHHcCCChhHH
Confidence              24678999999999987643

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-45  Score=336.96  Aligned_cols=325  Identities=21%  Similarity=0.227  Sum_probs=268.0

Q ss_pred             HHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhC---CHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            6 LEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFR---NQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         6 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      +.+...++++.++.|++.|++++..+..|.||||+|+..+   +.+++++|++.         |++++.++..|.||||+
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~---------Gadin~~~~~g~TpLh~   89 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA---------GADVNAPERCGFTPLHL   89 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC---------CCCCCCCCCCCCCHHHH
Confidence            4567888999999999999999999999999999999998   99999999998         67788899999999999


Q ss_pred             HHHhC-cHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHH--HcCCHHHHHHHHhCCCCCcccccccCCcH
Q 042906           83 AARIG-NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV--TNQHKRVIRILVEKDSVPSSYINKAYQTP  159 (415)
Q Consensus        83 A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  159 (415)
                      |+..| +.+++++|+++|++++             .++..|.||||+|+  ..++.+++++|++.|+++. ..+..|.||
T Consensus        90 A~~~~~~~~iv~lLl~~ga~in-------------~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tp  155 (471)
T PHA03095         90 YLYNATTLDVIKLLIKAGADVN-------------AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTP  155 (471)
T ss_pred             HHHcCCcHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCH
Confidence            99999 5999999999999877             56888999999999  5568999999999999876 567777888


Q ss_pred             HHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhc--CC
Q 042906          160 LSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS--GN  237 (415)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~--~~  237 (415)
                      +|+|+..+.                                 ++.++++.|++.+.. ++..+..|.||||.++..  +.
T Consensus       156 L~~a~~~~~---------------------------------~~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~  201 (471)
T PHA03095        156 LAVLLKSRN---------------------------------ANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPR  201 (471)
T ss_pred             HHHHHHcCC---------------------------------CCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCCCc
Confidence            887765441                                 234555666666554 344477788899888865  67


Q ss_pred             HHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH--HHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhC
Q 042906          238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL--KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS  315 (415)
Q Consensus       238 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  315 (415)
                      .++++.|++.|++++ .++..|.||||+|+..++.  .+++.|++.|++ ++.+|..|+||||+|+..|+.+++++|++.
T Consensus       202 ~~i~~~Ll~~g~~~~-~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~  279 (471)
T PHA03095        202 ARIVRELIRAGCDPA-ATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIAL  279 (471)
T ss_pred             HHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            899999999999988 6899999999999998874  688899999998 699999999999999999999999999999


Q ss_pred             CCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906          316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY  395 (415)
Q Consensus       316 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G  395 (415)
                      |++   ++.+|..|+||||+|+..|+.+++++|+++ +++++..+...  .++...+ .  ..........+.++++..|
T Consensus       280 gad---~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~-~~~~~~~~~~~--~~~~~~~-~--~~~~~~~~~~i~~~~~~~~  350 (471)
T PHA03095        280 GAD---INAVSSDGNTPLSLMVRNNNGRAVRAALAK-NPSAETVAATL--NTASVAG-G--DIPSDATRLCVAKVVLRGA  350 (471)
T ss_pred             CCC---CcccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCHHHHHHHH--HHHhhcc-C--CCccHHHHHHHHHHHHhcc
Confidence            988   899999999999999999999999999986 88887765444  3333333 0  1111223455667777667


Q ss_pred             HHH
Q 042906          396 AKR  398 (415)
Q Consensus       396 a~~  398 (415)
                      ++.
T Consensus       351 ~~~  353 (471)
T PHA03095        351 FSL  353 (471)
T ss_pred             hhh
Confidence            764

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.8e-45  Score=336.49  Aligned_cols=362  Identities=14%  Similarity=0.090  Sum_probs=254.5

Q ss_pred             hhHHHHHHhhccccccCCCCCCCHHHHHHHh---CCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHH
Q 042906           14 ENKIKQLALRQNIFSTSSPGGNTVLHMAVRF---RNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRA   90 (415)
Q Consensus        14 ~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~   90 (415)
                      ++.+++|+..+...+..|.+|+||||+|+..   |+.+++++|++.         +++++.++..|+||||+|+..|+.+
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~---------ga~v~~~~~~g~TpL~~Aa~~g~~~   82 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS---------GTNPLHKNWRQLTPLEEYTNSRHVK   82 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC---------CCCccccCCCCCCHHHHHHHcCChh
Confidence            5788999999999998899999999998665   889999999998         5667889999999999999999854


Q ss_pred             ----HHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHH--
Q 042906           91 ----IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI--  164 (415)
Q Consensus        91 ----~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~--  164 (415)
                          +++.|++.+..++             ..+  ..+++++|+.+++.++|++|++.|+++. ..+..|.|||+.++  
T Consensus        83 v~~~~~~~Ll~~~~~~n-------------~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~  146 (661)
T PHA02917         83 VNKDIAMALLEATGYSN-------------IND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVMT  146 (661)
T ss_pred             HHHHHHHHHHhccCCCC-------------CCC--cchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHHc
Confidence                5577777643222             111  2256667777778888888888887776 56777788887543  


Q ss_pred             HcCChhHHHHHhhhCCCCccCC-CC-----------CcchhHHHHHHH-----------cCCHHHHHHHHhcChhhhccc
Q 042906          165 DARLNDSACFIIDKSPESLNTT-RL-----------PDELTLLHFVVM-----------RQNYDIMVKILGTNKELIDRL  221 (415)
Q Consensus       165 ~~~~~~~~~~ll~~~~~~~~~~-~~-----------~~~~~~l~~a~~-----------~~~~~~~~~ll~~~~~~~~~~  221 (415)
                      ..++.+++++|++.+.+..... .+           ..+.||||+|+.           .++.+++++|++.+.+ ++..
T Consensus       147 ~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~  225 (661)
T PHA02917        147 DDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSI  225 (661)
T ss_pred             cCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccC
Confidence            4567888888887776654221 11           122478887765           3467778888777765 7777


Q ss_pred             ccCCCCHHHHHHhcCCH--HHHHHHHHhchhhhh---ccCCCCCCHHHHHHHc---------CCHHHHHHHHHhCCCcc-
Q 042906          222 DWHQRNPLHYAAASGNV--KMAQRLLEESKQLAY---KRDCNGETPLHLAAEN---------GKLKVLKLLINKYPDAI-  286 (415)
Q Consensus       222 ~~~~~t~l~~a~~~~~~--~~~~~Ll~~~~~~~~---~~~~~g~t~L~~A~~~---------~~~~~v~~Ll~~~~~~~-  286 (415)
                      +..|.||||+|+.+|+.  +++++|++ |++...   ..+..+.+|+++|+..         .+.+++++|++.|++.- 
T Consensus       226 d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~  304 (661)
T PHA02917        226 DKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGI  304 (661)
T ss_pred             CCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCce
Confidence            77788888888877764  67777764 554431   2344566667776631         15677777777775410 


Q ss_pred             -----ccc------------cCCCCcHHHHHH---hcCC--HHHHHHHhhCCCcc-------------------------
Q 042906          287 -----EIR------------DNSDRSILHVAA---KHGN--WNIVSFILKSPEME-------------------------  319 (415)
Q Consensus       287 -----~~~------------~~~g~t~l~~A~---~~~~--~~~~~~Ll~~~~~~-------------------------  319 (415)
                           +..            ...+.+++|.+.   ..|.  .+++++|++.|++.                         
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~  384 (661)
T PHA02917        305 MCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKK  384 (661)
T ss_pred             eEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHh
Confidence                 001            112223333322   2443  34666666666541                         


Q ss_pred             --cccccCCCCCCcHHHHHHhcCC-----------------------hHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          320 --NLINLVDRNGNTPLHLAAMGLH-----------------------SDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       320 --~~~~~~~~~g~t~l~~A~~~~~-----------------------~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                        ..++.++..|+||||.|+++++                       .+++++|+++ |+|+|.+|..|  +||||+|+.
T Consensus       385 ~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~-GAdIN~kd~~G--~TpLh~Aa~  461 (661)
T PHA02917        385 EGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPY-LKDINMIDKRG--ETLLHKAVR  461 (661)
T ss_pred             cCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHC-CCCCCCCCCCC--cCHHHHHHH
Confidence              1134556679999999875432                       5678999986 99999999999  999999998


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhh
Q 042906          375 TRADGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVS  412 (415)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~~~~~~~~~~  412 (415)
                             .+..+++++|+++||+++..+..+.++...+
T Consensus       462 -------~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A  492 (661)
T PHA02917        462 -------YNKQSLVSLLLESGSDVNIRSNNGYTCIAIA  492 (661)
T ss_pred             -------cCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence                   4678899999999999988877777766654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.9e-46  Score=349.74  Aligned_cols=383  Identities=27%  Similarity=0.327  Sum_probs=320.4

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      ++||.|++.|+++++.+++.+|+..+..+..|.||+|.|++.+..+++++|++.|         +++..++....||+|.
T Consensus       244 ~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~g---------a~~~~~~~~~kt~l~~  314 (1143)
T KOG4177|consen  244 TPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNG---------ADVLAKARDDQTPLHI  314 (1143)
T ss_pred             cHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccC---------cccccccccccChhhh
Confidence            4789999999999999999999999999999999999999999999999999984         5555666666677777


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchh-----------h---------hhhhcccCCCChHHHHHHHcCCHHHHHHHH
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVL-----------E---------SLFRMRDIEGNTPLHNAVTNQHKRVIRILV  142 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----------~---------~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  142 (415)
                      |...|..++++.+++.++..+........           .         ..-......|.||+|.|+.++..+++++++
T Consensus       315 a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll  394 (1143)
T KOG4177|consen  315 ASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLL  394 (1143)
T ss_pred             hcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhh
Confidence            76666666666666666655522111110           0         001134567888899999999999999999


Q ss_pred             hCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcC-CHHHHHHHHhcChhhhccc
Q 042906          143 EKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQ-NYDIMVKILGTNKELIDRL  221 (415)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~  221 (415)
                      ..|.++. .....|.||+|.+...++..+++.++..+.......  ..|+|++|.|+..+ ..+....+++.+.+ ++..
T Consensus       395 ~~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~--~lG~T~lhvaa~~g~~~~~~~~l~~~g~~-~n~~  470 (1143)
T KOG4177|consen  395 EAGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKA--KLGYTPLHVAAKKGRYLQIARLLLQYGAD-PNAV  470 (1143)
T ss_pred             hccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCCChhhHh--hcCCChhhhhhhcccHhhhhhhHhhcCCC-cchh
Confidence            9888854 788888899999999999999988888776655544  67799999999999 56666666665554 8888


Q ss_pred             ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906          222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA  301 (415)
Q Consensus       222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~  301 (415)
                      ...|.||||.|...|+.++++.|++.+...+ .....+-+++|.|...+...+++.++++|+. ++.++..|+||||.|+
T Consensus       471 s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~-~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~  548 (1143)
T KOG4177|consen  471 SKQGFTPLHLAAQEGHTEVVQLLLEGGANDN-LDAKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAV  548 (1143)
T ss_pred             ccccCcchhhhhccCCchHHHHhhhcCCccC-ccchhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHH
Confidence            8999999999999999999999999886665 4667889999999999999999999999999 6999999999999999


Q ss_pred             hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHH
Q 042906          302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE  381 (415)
Q Consensus       302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~  381 (415)
                      .+|+..+|++|+++|++   ++.+++.|+||||.|+..|+.+++.+|+++ |+++|+.|.+|  .|||++|.+       
T Consensus       549 ~~g~v~~VkfLLe~gAd---v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~-GA~vna~d~~g--~TpL~iA~~-------  615 (1143)
T KOG4177|consen  549 HYGNVDLVKFLLEHGAD---VNAKDKLGYTPLHQAAQQGHNDIAELLLKH-GASVNAADLDG--FTPLHIAVR-------  615 (1143)
T ss_pred             hcCCchHHHHhhhCCcc---ccccCCCCCChhhHHHHcChHHHHHHHHHc-CCCCCcccccC--cchhHHHHH-------
Confidence            99999999999999998   999999999999999999999999999987 99999999999  999999999       


Q ss_pred             HHHHHHHHHHHHHHHH-----HhhcHHHHHHHHhhhh
Q 042906          382 IQKHLTLKALKTAYAK-----RALSAEELQQKRQVSK  413 (415)
Q Consensus       382 ~~~~~~~~~L~~~Ga~-----~~~~~~~~~~~~~~~~  413 (415)
                      .++..++++|+..|++     +..+..-+..|.+|.+
T Consensus       616 lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e  652 (1143)
T KOG4177|consen  616 LGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAE  652 (1143)
T ss_pred             hcccchhhHHHhccCccccccchhhhhcccChhhHHH
Confidence            6899999999999999     5555555555555554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=7e-43  Score=321.30  Aligned_cols=347  Identities=16%  Similarity=0.074  Sum_probs=275.0

Q ss_pred             hHHHHHHH--cCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCC--HHHHHHHHhccchHHHHHHhHhhhcCCCCCCC
Q 042906            3 QELLEVLR--NGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRN--QQVIREILRQQNFIALRLHYSLLRQKNLMDET   78 (415)
Q Consensus         3 ~~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t   78 (415)
                      ++||.|+.  .++.++++.|++.|++++..|..|.||||+|+..|+  .+++++|++.         |++++.++..|+|
T Consensus       179 TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~---------GADVN~kD~~G~T  249 (764)
T PHA02716        179 GILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIEL---------GGDMDMKCVNGMS  249 (764)
T ss_pred             cHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc---------CCCCCCCCCCCCC
Confidence            57888764  468899999999999999999999999999999995  5999999998         6778889999999


Q ss_pred             hHHHHH---HhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHH---HHHHcCCHHHHHHHHhCCCCCcccc
Q 042906           79 PLHIAA---RIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLH---NAVTNQHKRVIRILVEKDSVPSSYI  152 (415)
Q Consensus        79 ~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~---~A~~~~~~~~v~~Ll~~~~~~~~~~  152 (415)
                      |||+|+   .+++.++++.|++.+....               .....++++   .|+..|+.+++++|++.|+++. ..
T Consensus       250 PLh~Ai~~a~n~~~EIvkiLie~~d~n~---------------~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN-~k  313 (764)
T PHA02716        250 PIMTYIINIDNINPEITNIYIESLDGNK---------------VKNIPMILHSYITLARNIDISVVYSFLQPGVKLH-YK  313 (764)
T ss_pred             HHHHHHHhhhccCHHHHHHHHHhccccc---------------cccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee-cc
Confidence            999886   4678999999998653211               011122333   4788999999999999999876 67


Q ss_pred             cccCCcHHHHHHH--cCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHH--------------cCCHHHHHHHHhcChh
Q 042906          153 NKAYQTPLSIAID--ARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVM--------------RQNYDIMVKILGTNKE  216 (415)
Q Consensus       153 ~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~--------------~~~~~~~~~ll~~~~~  216 (415)
                      +..|.||||+|+.  .++.+++++|++.+.+...  .+..|.||||.|+.              .++.+++++|++.+.+
T Consensus       314 D~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~--kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD  391 (764)
T PHA02716        314 DSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE--PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD  391 (764)
T ss_pred             CCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc--CCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC
Confidence            9999999999764  4578999999998876544  34789999999865              3688999999998866


Q ss_pred             hhcccccCCCCHHHHH----HhcCCHHHHHHHHHhchhhhhc-------cCCCCCCH--HHHHHHcCCHH----------
Q 042906          217 LIDRLDWHQRNPLHYA----AASGNVKMAQRLLEESKQLAYK-------RDCNGETP--LHLAAENGKLK----------  273 (415)
Q Consensus       217 ~~~~~~~~~~t~l~~a----~~~~~~~~~~~Ll~~~~~~~~~-------~~~~g~t~--L~~A~~~~~~~----------  273 (415)
                       ++..+..|.||||.+    ...++.+++++|++.+......       ....+.+|  +|.++..+..+          
T Consensus       392 -In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~  470 (764)
T PHA02716        392 -ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEP  470 (764)
T ss_pred             -CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhh
Confidence             889999999999942    2356899999999987543210       11223333  45555443332          


Q ss_pred             --------HHHHHHHhCCCccccccCCCCcHHHHHHhcCCH-----HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcC
Q 042906          274 --------VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW-----NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL  340 (415)
Q Consensus       274 --------~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~-----~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~  340 (415)
                              ++..++..+.. ++..|..|+||||+|+..|+.     +++++|++.|++   +|.+|..|+||||+|++.|
T Consensus       471 ~~~~~~~~v~~~~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD---IN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        471 YDSTKIHDVYHCAIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN---INIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             ccccccchhhHHHHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC---CcccCCCCCCHHHHHHHcC
Confidence                    23333334445 578899999999999999876     456999999988   9999999999999999999


Q ss_pred             Ch-----HHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          341 HS-----DVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       341 ~~-----~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      +.     ++++.||++ |++++..        .+++|..       +...+++.+|..+|+.
T Consensus       547 ~~~~~~~eIvk~LL~~-ga~~~~~--------~l~~~~~-------~~~~~~~~ll~~~~~~  592 (764)
T PHA02716        547 RLSGHQWYIVKNILDK-RPNVDIV--------IIFLDKC-------YANGKFPSLLLSEDDI  592 (764)
T ss_pred             CccccHHHHHHHHHhc-CCCcchH--------HHHHHhh-------hhhhHHHHHHHHcchh
Confidence            77     999999986 8888754        5788887       5778899999999985

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-43  Score=326.17  Aligned_cols=295  Identities=21%  Similarity=0.231  Sum_probs=252.2

Q ss_pred             HHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhC---cHHHHHHHHhhccccccCCCcchhhhhh
Q 042906           39 HMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIG---NRAIVSEIVKYVPAVNQAGPLPVLESLF  115 (415)
Q Consensus        39 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  115 (415)
                      ..++..++++++++|++.         +++++.++..|.||||+|+..+   +.+++++|+++|++++            
T Consensus        19 ~~~~~~~~~~~v~~Ll~~---------ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin------------   77 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA---------GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN------------   77 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc---------CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCC------------
Confidence            446677889999999997         5677888889999999999988   8999999999999877            


Q ss_pred             hcccCCCChHHHHHHHcC-CHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhH
Q 042906          116 RMRDIEGNTPLHNAVTNQ-HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTL  194 (415)
Q Consensus       116 ~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~  194 (415)
                       .++..|.||||+|+..+ +.+++++|++.|+++. ..+..|.||||+|+..                            
T Consensus        78 -~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~----------------------------  127 (471)
T PHA03095         78 -APERCGFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSG----------------------------  127 (471)
T ss_pred             -CCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhC----------------------------
Confidence             56778999999999999 5999999999998875 5666677777777622                            


Q ss_pred             HHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcC--CHHHHHHHHHhchhhhhccCCCCCCHHHHHHHc--C
Q 042906          195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG--NVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN--G  270 (415)
Q Consensus       195 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~  270 (415)
                           ..++.++++.|++.+.+ ++..+..|.||||+|+..+  +.+++++|++.|++... .+..|.||||+|+..  +
T Consensus       128 -----~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~-~d~~g~t~Lh~~~~~~~~  200 (471)
T PHA03095        128 -----FNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKP  200 (471)
T ss_pred             -----CcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHHCCC
Confidence                 12344556666666554 6777888999999998876  68999999999999885 489999999999875  7


Q ss_pred             CHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH--HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906          271 KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW--NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (415)
Q Consensus       271 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~--~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  348 (415)
                      +.++++.|++.|++ ++.+|..|+||||+|+..++.  .+++.|++.|.+   +|.+|..|+||||+|+..|+.+++++|
T Consensus       201 ~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d---in~~d~~g~TpLh~A~~~~~~~~v~~L  276 (471)
T PHA03095        201 RARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS---INARNRYGQTPLHYAAVFNNPRACRRL  276 (471)
T ss_pred             cHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            88999999999999 599999999999999999875  688899999987   999999999999999999999999999


Q ss_pred             hhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 042906          349 SRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEEL  405 (415)
Q Consensus       349 l~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~~~  405 (415)
                      +++ |+|++.+|.+|  +|||++|++       .++.+++++|++.|++++......
T Consensus       277 L~~-gad~n~~~~~g--~tpl~~A~~-------~~~~~~v~~LL~~~~~~~~~~~~~  323 (471)
T PHA03095        277 IAL-GADINAVSSDG--NTPLSLMVR-------NNNGRAVRAALAKNPSAETVAATL  323 (471)
T ss_pred             HHc-CCCCcccCCCC--CCHHHHHHH-------hCCHHHHHHHHHhCCCHHHHHHHH
Confidence            986 99999999999  999999999       588999999999999876554443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.3e-46  Score=349.35  Aligned_cols=370  Identities=22%  Similarity=0.267  Sum_probs=257.8

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      +++|.|++.+.++.+..++.+|+++...+..|.||||.|+..|+++++++++..         ++..+..+..|.||+|.
T Consensus       211 tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~---------ga~~~~~~vr~~tplh~  281 (1143)
T KOG4177|consen  211 TPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQH---------GASVNVSTVRGETPLHM  281 (1143)
T ss_pred             CchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhc---------ccccCcccccccCcchh
Confidence            578999999999999999999999999999999999999999999999999997         67778888899999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHH
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~  162 (415)
                      |+..+..+++++|++.|+++..             ++....||+|.|...+..++++++++.++.+. ..+..+.+|+|+
T Consensus       282 AA~~~~~e~~~~ll~~ga~~~~-------------~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~-aar~~g~t~lHl  347 (1143)
T KOG4177|consen  282 AARAGQVEVCKLLLQNGADVLA-------------KARDDQTPLHIASRLGHEEIVHLLLQAGATPN-AARTAGYTPLHL  347 (1143)
T ss_pred             hhccchhhhHhhhhccCccccc-------------ccccccChhhhhcccchHHHHHHHhhccCCcc-ccCcCCcccccH
Confidence            9999999999999999998773             34444555555555555555555555544443 344444455555


Q ss_pred             HHHcCChhHHHHHhhhCCCCccCC-------------------------------CCCcchhHHHHHHHcCCHHHHHHHH
Q 042906          163 AIDARLNDSACFIIDKSPESLNTT-------------------------------RLPDELTLLHFVVMRQNYDIMVKIL  211 (415)
Q Consensus       163 a~~~~~~~~~~~ll~~~~~~~~~~-------------------------------~~~~~~~~l~~a~~~~~~~~~~~ll  211 (415)
                      ++..++.++..++...........                               ....|.||+|.++..++..+++.++
T Consensus       348 aa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l  427 (1143)
T KOG4177|consen  348 AAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLL  427 (1143)
T ss_pred             hhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEe
Confidence            544444444444443333322222                               2234444444444444444444444


Q ss_pred             hcChhhhcccccCCCCHHHHHHhcC-CHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 042906          212 GTNKELIDRLDWHQRNPLHYAAASG-NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD  290 (415)
Q Consensus       212 ~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  290 (415)
                      ..+.. .+..+..|+|++|.|+..+ ..+....+++.+.+++ .....|.||||.|+..|+.+++..+++.++. .+...
T Consensus       428 ~~gA~-~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n-~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~  504 (1143)
T KOG4177|consen  428 KRGAS-PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPN-AVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDA  504 (1143)
T ss_pred             ccCCC-hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcc-hhccccCcchhhhhccCCchHHHHhhhcCCc-cCccc
Confidence            44433 4444555555555555555 4555555555555554 3455555566666566666666655555544 35555


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHH
Q 042906          291 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALE  370 (415)
Q Consensus       291 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~  370 (415)
                      ..+-+++|.|...+...+++.++++|+.   ++.++..|+||||+|+..|+.++|++||++ |+|++++++.|  +||||
T Consensus       505 ~~~l~~lhla~~~~~v~~~~~l~~~ga~---v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G--~TPLH  578 (1143)
T KOG4177|consen  505 KKGLTPLHLAADEDTVKVAKILLEHGAN---VDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLG--YTPLH  578 (1143)
T ss_pred             hhccchhhhhhhhhhHHHHHHHhhcCCc---eehhcccccchHHHHHhcCCchHHHHhhhC-CccccccCCCC--CChhh
Confidence            5555666666666666666666666555   788999999999999999999999999997 99999999999  99999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhh
Q 042906          371 IAEITRADGKEIQKHLTLKALKTAYAKRALSAEELQQKRQV  411 (415)
Q Consensus       371 ~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~~~~~~~~~  411 (415)
                      .|+.       .++.+++++|+++||+++..+..+-+++-.
T Consensus       579 ~Aa~-------~G~~~i~~LLlk~GA~vna~d~~g~TpL~i  612 (1143)
T KOG4177|consen  579 QAAQ-------QGHNDIAELLLKHGASVNAADLDGFTPLHI  612 (1143)
T ss_pred             HHHH-------cChHHHHHHHHHcCCCCCcccccCcchhHH
Confidence            9999       679999999999999999887766665544

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.3e-43  Score=319.45  Aligned_cols=315  Identities=20%  Similarity=0.216  Sum_probs=244.7

Q ss_pred             HHHHHHHcCChhHHHHHHhhc----cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCCh
Q 042906            4 ELLEVLRNGDENKIKQLALRQ----NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETP   79 (415)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~~----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~   79 (415)
                      +|+.++...+.+.+...++.-    ...+..+..+.||||+|+..|+.+++++|++.         +++++.++..|+||
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~---------gadvn~~d~~g~Tp   73 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTR---------GHNVNQPDHRDLTP   73 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHC---------CCCCCCCCCCCCCH
Confidence            577888888876666666652    11233344678899999999999999999997         56678888899999


Q ss_pred             HHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcH
Q 042906           80 LHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP  159 (415)
Q Consensus        80 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  159 (415)
                      ||+||..|+.+++++|++.+....               ...+.+|++.|+..++.+++++|+..+.......+      
T Consensus        74 Lh~A~~~g~~~~v~~Ll~~~~~~~---------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~------  132 (477)
T PHA02878         74 LHIICKEPNKLGMKEMIRSINKCS---------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID------  132 (477)
T ss_pred             HHHHHHCccHhHHHHHHHHHhccc---------------cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc------
Confidence            999999999999999998766433               14567899999999999999999877543211000      


Q ss_pred             HHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccC-CCCHHHHHHhcCCH
Q 042906          160 LSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWH-QRNPLHYAAASGNV  238 (415)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~t~l~~a~~~~~~  238 (415)
                      +.....            ..                  .......++++.|++.+.+ ++..+.. |.||||+|+..|+.
T Consensus       133 ~~~~~~------------~~------------------~~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~  181 (477)
T PHA02878        133 LVYIDK------------KS------------------KDDIIEAEITKLLLSYGAD-INMKDRHKGNTALHYATENKDQ  181 (477)
T ss_pred             HHHHhh------------cc------------------chhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCH
Confidence            000000            00                  0001123578888888766 7777777 99999999999999


Q ss_pred             HHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc-CCHHHHHHHhhCCC
Q 042906          239 KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH-GNWNIVSFILKSPE  317 (415)
Q Consensus       239 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~  317 (415)
                      +++++|++.|++++ ..+..|.||||.|+..++.+++++|++.|++ ++.+|..|+||||+|+.. ++.+++++|+++|+
T Consensus       182 ~iv~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga  259 (477)
T PHA02878        182 RLTELLLSYGANVN-IPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHGV  259 (477)
T ss_pred             HHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC
Confidence            99999999999887 5788999999999999999999999999998 599999999999999975 68999999999998


Q ss_pred             cccccccCCC-CCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906          318 MENLINLVDR-NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY  395 (415)
Q Consensus       318 ~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G  395 (415)
                      +   ++.++. .|.||||+|  .++.+++++|+++ |+|++..|.+|  .|||++|++.      ....+++++|+..+
T Consensus       260 d---vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~-gadin~~d~~g--~TpL~~A~~~------~~~~~~~~~li~~~  324 (477)
T PHA02878        260 D---VNAKSYILGLTALHSS--IKSERKLKLLLEY-GADINSLNSYK--LTPLSSAVKQ------YLCINIGRILISNI  324 (477)
T ss_pred             C---CCccCCCCCCCHHHHH--ccCHHHHHHHHHC-CCCCCCcCCCC--CCHHHHHHHH------cCccchHHHHHHHH
Confidence            8   888775 799999999  5778999999986 99999999999  9999999873      22334566666554

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-43  Score=324.54  Aligned_cols=287  Identities=24%  Similarity=0.321  Sum_probs=239.3

Q ss_pred             cCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH-----HHH
Q 042906           11 NGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI-----AAR   85 (415)
Q Consensus        11 ~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~-----A~~   85 (415)
                      ....+.++++++.+...+..+..+.||||+|+..|+.+++++|++.         |++++..+..+.||||+     |+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~---------g~~~~~~~~~~~t~L~~~~~~~a~~   82 (480)
T PHA03100         12 IIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDN---------GADINSSTKNNSTPLHYLSNIKYNL   82 (480)
T ss_pred             HHHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHc---------CCCCCCccccCcCHHHHHHHHHHHh
Confidence            3456788888888877777888899999999999999999999997         56677788889999999     999


Q ss_pred             hCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHH--HcCCHHHHHHHHhCCCCCcccccccCCcHHHHH
Q 042906           86 IGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV--TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA  163 (415)
Q Consensus        86 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a  163 (415)
                      .++.+++++|+++|++++             ..+..|.||||+|+  ..|+.+++++|++.|+++. ..+..|.||||+|
T Consensus        83 ~~~~~iv~~Ll~~ga~i~-------------~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A  148 (480)
T PHA03100         83 TDVKEIVKLLLEYGANVN-------------APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHLY  148 (480)
T ss_pred             hchHHHHHHHHHCCCCCC-------------CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHHHH
Confidence            999999999999999876             46788999999999  9999999999999998765 4555666666666


Q ss_pred             HHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHH
Q 042906          164 IDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR  243 (415)
Q Consensus       164 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  243 (415)
                      +..+.                                 .+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++
T Consensus       149 ~~~~~---------------------------------~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~  194 (480)
T PHA03100        149 LESNK---------------------------------IDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKF  194 (480)
T ss_pred             HHcCC---------------------------------ChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHH
Confidence            66550                                 044445555555443 55566678888888888888888888


Q ss_pred             HHHhchhhhhccCCCC------CCHHHHHHHcCC--HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhC
Q 042906          244 LLEESKQLAYKRDCNG------ETPLHLAAENGK--LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS  315 (415)
Q Consensus       244 Ll~~~~~~~~~~~~~g------~t~L~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  315 (415)
                      |+++|+++. ..+..|      .||||.|+..++  .+++++|++.|++ ++.+|..|.||||+|+..++.+++++|++.
T Consensus       195 Ll~~ga~~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  272 (480)
T PHA03100        195 LLDNGADIN-AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDL  272 (480)
T ss_pred             HHHcCCCcc-CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            888888776 455566      899999999999  9999999999998 599999999999999999999999999999


Q ss_pred             CCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccc
Q 042906          316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN  360 (415)
Q Consensus       316 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d  360 (415)
                      |++   ++.+|..|.||+++|+..++.+++++|+++ |++++..+
T Consensus       273 gad---~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~-g~~i~~i~  313 (480)
T PHA03100        273 GAN---PNLVNKYGDTPLHIAILNNNKEIFKLLLNN-GPSIKTII  313 (480)
T ss_pred             CCC---CCccCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCHHHHH
Confidence            987   899999999999999999999999999986 88888754

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-43  Score=323.24  Aligned_cols=284  Identities=23%  Similarity=0.285  Sum_probs=244.8

Q ss_pred             CCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCCh
Q 042906           45 RNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNT  124 (415)
Q Consensus        45 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t  124 (415)
                      ...++++++++.         +...+..+..+.||||.|+..|+.++|++|+++|++++             ..+..+.|
T Consensus        13 ~~~~~~~~~~~~---------~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~-------------~~~~~~~t   70 (480)
T PHA03100         13 IKVKNIKYIIME---------DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN-------------SSTKNNST   70 (480)
T ss_pred             HHHHHHHHHHhc---------CccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC-------------CccccCcC
Confidence            345677888875         34555677889999999999999999999999998877             45677889


Q ss_pred             HHHH-----HHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHH--HcCChhHHHHHhhhCCCCccCCCCCcchhHHHH
Q 042906          125 PLHN-----AVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI--DARLNDSACFIIDKSPESLNTTRLPDELTLLHF  197 (415)
Q Consensus       125 ~l~~-----A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~  197 (415)
                      |||+     |+..++.+++++|++.|+++. ..+..|.||||+|+  ..++.+++++|+                     
T Consensus        71 ~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll---------------------  128 (480)
T PHA03100         71 PLHYLSNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLL---------------------  128 (480)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHH---------------------
Confidence            9999     999999999999999998773 56666666666666  555555555555                     


Q ss_pred             HHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcC--CHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHH
Q 042906          198 VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG--NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVL  275 (415)
Q Consensus       198 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  275 (415)
                                    +.+.. ++..+..|.||||.|+..+  +.+++++|+++|++++ ..+..|.||||+|+..++.+++
T Consensus       129 --------------~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din-~~d~~g~tpL~~A~~~~~~~iv  192 (480)
T PHA03100        129 --------------DNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN-AKNRYGYTPLHIAVEKGNIDVI  192 (480)
T ss_pred             --------------HcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc-cccCCCCCHHHHHHHhCCHHHH
Confidence                          44433 5566778999999999999  9999999999999987 5778999999999999999999


Q ss_pred             HHHHHhCCCccccccCCC------CcHHHHHHhcCC--HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHH
Q 042906          276 KLLINKYPDAIEIRDNSD------RSILHVAAKHGN--WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT  347 (415)
Q Consensus       276 ~~Ll~~~~~~~~~~~~~g------~t~l~~A~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  347 (415)
                      ++|+++|++ ++..+..|      .||||+|+..++  .+++++|++.|++   ++.+|..|.||||+|+..|+.+++++
T Consensus       193 ~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d---in~~d~~g~TpL~~A~~~~~~~iv~~  268 (480)
T PHA03100        193 KFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP---INIKDVYGFTPLHYAVYNNNPEFVKY  268 (480)
T ss_pred             HHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999 58888888      899999999999  9999999999988   89999999999999999999999999


Q ss_pred             HhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906          348 LSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSA  402 (415)
Q Consensus       348 Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~  402 (415)
                      |+++ |+|++.+|..|  .||+++|++       .+..+++++|+++|++.+.-.
T Consensus       269 Ll~~-gad~n~~d~~g--~tpl~~A~~-------~~~~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        269 LLDL-GANPNLVNKYG--DTPLHIAIL-------NNNKEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             HHHc-CCCCCccCCCC--CcHHHHHHH-------hCCHHHHHHHHhcCCCHHHHH
Confidence            9986 99999999999  999999999       578899999999999876544

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=304.90  Aligned_cols=278  Identities=18%  Similarity=0.268  Sum_probs=228.5

Q ss_pred             HcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhC--CHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhC
Q 042906           10 RNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFR--NQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIG   87 (415)
Q Consensus        10 ~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g   87 (415)
                      ...+.++++.|++.|++++.. ..|.||||.++..+  +.+++++|++.|         ++++.++ .+.||||.|+.++
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~G---------Advn~~~-~~~tpL~~a~~~~   80 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNG---------ADVNYKG-YIETPLCAVLRNR   80 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcC---------CCccCCC-CCCCcHHHHHhcc
Confidence            357999999999999999988 67899988766543  689999999984         5556555 5789999998754


Q ss_pred             ------cHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHc---CCHHHHHHHHhCCCCCcccccccCCc
Q 042906           88 ------NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTN---QHKRVIRILVEKDSVPSSYINKAYQT  158 (415)
Q Consensus        88 ------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~  158 (415)
                            +.+++++|+++|++++             .++..|.||||.|+..   ++.+++++|+++|+++....+..|.|
T Consensus        81 ~~~~~~~~~iv~~Ll~~Gadin-------------~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t  147 (494)
T PHA02989         81 EITSNKIKKIVKLLLKFGADIN-------------LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN  147 (494)
T ss_pred             CcchhhHHHHHHHHHHCCCCCC-------------CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence                  5789999999999987             5788999999988765   67899999999999884466777777


Q ss_pred             HHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcc-cccCCCCHHHHHHhcC-
Q 042906          159 PLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDR-LDWHQRNPLHYAAASG-  236 (415)
Q Consensus       159 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~~t~l~~a~~~~-  236 (415)
                      |||+|+..+                                 .++.++++.|++.+.+ ++. .+..|.||||.|+..+ 
T Consensus       148 pLh~a~~~~---------------------------------~~~~~iv~~Ll~~Gad-i~~~~~~~g~tpL~~a~~~~~  193 (494)
T PHA02989        148 LLHMYLESF---------------------------------SVKKDVIKILLSFGVN-LFEKTSLYGLTPMNIYLRNDI  193 (494)
T ss_pred             HHHHHHHhc---------------------------------cCCHHHHHHHHHcCCC-ccccccccCCChHHHHHhccc
Confidence            777765432                                 1234445555555544 333 5678999999998764 


Q ss_pred             ---CHHHHHHHHHhchhhhhccCCCCCCHHHHHHHc------CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH
Q 042906          237 ---NVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN------GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN  307 (415)
Q Consensus       237 ---~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~------~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  307 (415)
                         +.+++++|++.|++++ ..+..+.++|+.++..      +..+++++|+. +++ ++.+|..|+||||+|+..++.+
T Consensus       194 ~~~~~~iv~~Ll~~Ga~vn-~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~  270 (494)
T PHA02989        194 DVISIKVIKYLIKKGVNIE-TNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYE  270 (494)
T ss_pred             ccccHHHHHHHHhCCCCcc-ccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHH
Confidence               8999999999999987 5677899999987654      45788887765 577 6999999999999999999999


Q ss_pred             HHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          308 IVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       308 ~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      ++++|++.|++   ++.+|..|+||||+|+..++.+++++|++.
T Consensus       271 ~v~~LL~~Gad---in~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        271 AFNYLLKLGDD---IYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             HHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999988   999999999999999999999999999975

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-39  Score=297.39  Aligned_cols=299  Identities=18%  Similarity=0.172  Sum_probs=206.4

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      .+||.|+..|+.++|+.|++.|++++..+..|.||||+||..|+.+++++|++.+.         ....  ..+.+|++.
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~---------~~~~--~~~~~~l~~  107 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSIN---------KCSV--FYTLVAIKD  107 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHh---------cccc--ccchhhHHH
Confidence            47999999999999999999999999999999999999999999999999999732         1111  467899999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHc--CCHHHHHHHHhCCCCCccccccc-CCcH
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTN--QHKRVIRILVEKDSVPSSYINKA-YQTP  159 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~-~~~~  159 (415)
                      |+..++.+++++|+..+.+....               .....+..+...  .+.+++++|++.|+++.. .+.. |.||
T Consensus       108 a~~~~~~ei~~~Ll~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~-~~~~~g~tp  171 (477)
T PHA02878        108 AFNNRNVEIFKIILTNRYKNIQT---------------IDLVYIDKKSKDDIIEAEITKLLLSYGADINM-KDRHKGNTA  171 (477)
T ss_pred             HHHcCCHHHHHHHHhCcccCccc---------------CcHHHHhhccchhhHHHHHHHHHHHcCCCCCc-cCCCCCCCH
Confidence            99999999999999876532210               000111111111  234588889988887763 3333 6666


Q ss_pred             HHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHH
Q 042906          160 LSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK  239 (415)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  239 (415)
                      ||+|+..++.+++++|++                                   .+.+ ++..+..|.||||.|+..++.+
T Consensus       172 Lh~A~~~~~~~iv~~Ll~-----------------------------------~gad-~n~~d~~g~tpLh~A~~~~~~~  215 (477)
T PHA02878        172 LHYATENKDQRLTELLLS-----------------------------------YGAN-VNIPDKTNNSPLHHAVKHYNKP  215 (477)
T ss_pred             HHHHHhCCCHHHHHHHHH-----------------------------------CCCC-CCCcCCCCCCHHHHHHHhCCHH
Confidence            666665555555555554                                   4433 4555666777777777777777


Q ss_pred             HHHHHHHhchhhhhccCCCCCCHHHHHHHc-CCHHHHHHHHHhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHhhCCC
Q 042906          240 MAQRLLEESKQLAYKRDCNGETPLHLAAEN-GKLKVLKLLINKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPE  317 (415)
Q Consensus       240 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~  317 (415)
                      ++++|++.|++++ .++..|.||||+|+.. ++.+++++|+++|++ ++.++. .|.||||+|  .++.+++++|+++|+
T Consensus       216 iv~~Ll~~ga~in-~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~ga  291 (477)
T PHA02878        216 IVHILLENGASTD-ARDKCGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKLLLEYGA  291 (477)
T ss_pred             HHHHHHHcCCCCC-CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCC
Confidence            7777777777766 4667777777777754 567777777777777 466554 577777777  356677777777776


Q ss_pred             cccccccCCCCCCcHHHHHHhcC-ChHHHHHHhhc----cCcCccccccccccchhHHHHH
Q 042906          318 MENLINLVDRNGNTPLHLAAMGL-HSDVVFTLSRH----KSVNIRAKNRSARNNIALEIAE  373 (415)
Q Consensus       318 ~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~----~g~~~~~~d~~g~~~t~l~~a~  373 (415)
                      +   ++.+|..|.||||+|+..+ ..+++++|+.+    .+.+++.++.+|  .++-.-+.
T Consensus       292 d---in~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g--~~~n~~~i  347 (477)
T PHA02878        292 D---INSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEG--FIDNMDCI  347 (477)
T ss_pred             C---CCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHH--HHHHHHHH
Confidence            6   7777777777777777643 34455555432    245666667666  55443333

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-39  Score=268.85  Aligned_cols=235  Identities=16%  Similarity=0.211  Sum_probs=175.0

Q ss_pred             hCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHH
Q 042906           86 IGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID  165 (415)
Q Consensus        86 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~  165 (415)
                      .++.+++++|+++|++               .+|..|.||||+|+..|+.+++++|++.|+++..   ..+.|       
T Consensus         9 ~~~~~~~~~Lis~~a~---------------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---~d~~T-------   63 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---------------KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL---LENEF-------   63 (284)
T ss_pred             cCHHHHHHHHHhCCCC---------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC---CCCCC-------
Confidence            4678888888888774               2477888999999999999999999888875532   12344       


Q ss_pred             cCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHH
Q 042906          166 ARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL  245 (415)
Q Consensus       166 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  245 (415)
                                                  |||.|+..|+.++++.|+..+.. ++..+..|.||||+|+..|+.+++++|+
T Consensus        64 ----------------------------pLh~Aa~~g~~eiV~lLL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll  114 (284)
T PHA02791         64 ----------------------------PLHQAATLEDTKIVKILLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFV  114 (284)
T ss_pred             ----------------------------HHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                        55555555555555555554433 5666777888888888888888888888


Q ss_pred             HhchhhhhccCCCC-CCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCccccccc
Q 042906          246 EESKQLAYKRDCNG-ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL  324 (415)
Q Consensus       246 ~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  324 (415)
                      ++|++++ ..+..| .||||+|+..++.+++++|++++++..+.  ..|.||||+|+..|+.+++++|+++|++   ++.
T Consensus       115 ~~gadin-~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~gAd---~n~  188 (284)
T PHA02791        115 KKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTS---TNT  188 (284)
T ss_pred             HCCCCcC-ccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc--ccCccHHHHHHHcCCHHHHHHHHHCCCC---CCc
Confidence            8888776 355555 47888888888888888888876553111  2478888888888888888888888877   778


Q ss_pred             CCCCCCcH-HHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          325 VDRNGNTP-LHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       325 ~~~~g~t~-l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      +|..|.|| ||+|+..|+.+++++|+++ |++++++|.+|   |+|             +..+++++|+++-++
T Consensus       189 ~d~~g~t~~L~~Aa~~~~~e~v~lLl~~-Ga~in~~~~~~---~~l-------------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        189 NNSLLFIPDIKLAIDNKDLEMLQALFKY-DINIYSVNLEN---VLL-------------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccCcccC---ccC-------------CCHHHHHHHHHhhhh
Confidence            88888876 8888888888888888875 88888888854   666             233478888888776

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-38  Score=263.05  Aligned_cols=233  Identities=19%  Similarity=0.190  Sum_probs=157.0

Q ss_pred             cCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHH
Q 042906           11 NGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRA   90 (415)
Q Consensus        11 ~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~   90 (415)
                      .++.++++.|++.|+  +..|.+|.||||+|+..|+.+++++|++.++         +++..  +|+||||+|+..|+.+
T Consensus         9 ~~~~~~~~~Lis~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga---------~~n~~--d~~TpLh~Aa~~g~~e   75 (284)
T PHA02791          9 WKSKQLKSFLSSKDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGA---------LKNLL--ENEFPLHQAATLEDTK   75 (284)
T ss_pred             cCHHHHHHHHHhCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcC---------CCcCC--CCCCHHHHHHHCCCHH
Confidence            467788888888776  3567788888888888888888888888743         33333  3678888888888888


Q ss_pred             HHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccC-CcHHHHHHHcCCh
Q 042906           91 IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY-QTPLSIAIDARLN  169 (415)
Q Consensus        91 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~l~~a~~~~~~  169 (415)
                      ++++|+++|++++             .+|..|.||||+|+..|+.+++++|++.|++.. ..+..| .||||+|+..++.
T Consensus        76 iV~lLL~~Gadvn-------------~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin-~~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791         76 IVKILLFSGMDDS-------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             HHHHHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCcHHHHHHHHcCCH
Confidence            8888888888766             467788888888888888888888888887664 233333 2455555555555


Q ss_pred             hHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhch
Q 042906          170 DSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK  249 (415)
Q Consensus       170 ~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  249 (415)
                      +++++|++                                   .++...+.  ..|.||||+|+..|+.+++++|+++|+
T Consensus       142 eivk~LL~-----------------------------------~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~gA  184 (284)
T PHA02791        142 SIVSYFLS-----------------------------------EIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMT  184 (284)
T ss_pred             HHHHHHHh-----------------------------------cCCccccc--ccCccHHHHHHHcCCHHHHHHHHHCCC
Confidence            55544443                                   22111100  125677777777777777777777776


Q ss_pred             hhhhccCCCCCCH-HHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCC
Q 042906          250 QLAYKRDCNGETP-LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP  316 (415)
Q Consensus       250 ~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  316 (415)
                      +++ ..+..|.|| ||+|+..|+.+++++|+++|++ ++.+|..| +++      ++.|++++||++.
T Consensus       185 d~n-~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~-in~~~~~~-~~l------~~~e~~~~ll~~~  243 (284)
T PHA02791        185 STN-TNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN-IYSVNLEN-VLL------DDAEIAKMIIEKH  243 (284)
T ss_pred             CCC-cccCCCCChHHHHHHHcCCHHHHHHHHHCCCC-CccCcccC-ccC------CCHHHHHHHHHhh
Confidence            665 455566655 7777777777777777777776 46666633 333      6667777777664

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=277.88  Aligned_cols=355  Identities=12%  Similarity=0.062  Sum_probs=262.3

Q ss_pred             HHhhccccccCCCCCCCHHHH-HHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHH-hCcHHHHHHHHh
Q 042906           20 LALRQNIFSTSSPGGNTVLHM-AVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR-IGNRAIVSEIVK   97 (415)
Q Consensus        20 ll~~~~~~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~   97 (415)
                      ++.-+...+..+.+|.+|+|+ |+..|+.|++++|+++         |++++.++..+.||+++|+. .++.|++++|++
T Consensus        57 ~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~---------GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~  127 (631)
T PHA02792         57 VILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISK---------GLEINSIKNGINIVEKYATTSNPNVDVFKLLLD  127 (631)
T ss_pred             HHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHc---------CCCcccccCCCCcceeEeecCCCChHHHHHHHH
Confidence            333444555556667777766 4456789999999997         67788888888999999966 689999999999


Q ss_pred             hccccc---cCCCcchhh--------------------hhhhcccCCCChHHHHHHHcC-------CHHHHHHHHhCCCC
Q 042906           98 YVPAVN---QAGPLPVLE--------------------SLFRMRDIEGNTPLHNAVTNQ-------HKRVIRILVEKDSV  147 (415)
Q Consensus        98 ~~~~~~---~~~~~~~~~--------------------~~~~~~~~~g~t~l~~A~~~~-------~~~~v~~Ll~~~~~  147 (415)
                      +|+++.   ..|-.+...                    ..++..|..|.||||+|+.++       +.++++.|+++|++
T Consensus       128 ~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~  207 (631)
T PHA02792        128 KGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE  207 (631)
T ss_pred             CCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC
Confidence            999854   233332211                    134466788999999999998       89999999999998


Q ss_pred             CcccccccCCcHHHHHHHcC--ChhHHHHHhhhCCCCccCCCCCcchhHHHHHHH--c----C--CHHHHHHHHhcCh--
Q 042906          148 PSSYINKAYQTPLSIAIDAR--LNDSACFIIDKSPESLNTTRLPDELTLLHFVVM--R----Q--NYDIMVKILGTNK--  215 (415)
Q Consensus       148 ~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~--~----~--~~~~~~~ll~~~~--  215 (415)
                      +. ..+..|.||||+|+...  ..+++++|+.. .....     .....|.--..  .    .  +..++..|++.+.  
T Consensus       208 ~~-~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~-~~~~~-----~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~  280 (631)
T PHA02792        208 MR-YYTYREHTTLYYYVDKCDIKREIFDALFDS-NYSGN-----ELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTF  280 (631)
T ss_pred             cC-ccCCCCChHHHHHHHcccchHHHHHHHHhc-ccccc-----chHhHHHHHHHHHhccCccCccHHHHHHHHhCCCcc
Confidence            86 56778999999999999  88999999864 21111     11122221111  1    1  2337777776554  


Q ss_pred             hhhcccc---c-------------CCCCHHHHHHhcC--CHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHH
Q 042906          216 ELIDRLD---W-------------HQRNPLHYAAASG--NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKL  277 (415)
Q Consensus       216 ~~~~~~~---~-------------~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  277 (415)
                      +......   .             .-+..||.-..++  +.+++++|++.|++..   ......+++.|+..++.+++++
T Consensus       281 ~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVel  357 (631)
T PHA02792        281 YILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEY  357 (631)
T ss_pred             chhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHH
Confidence            1111110   0             0112344444444  7899999999999864   2235667999999999999999


Q ss_pred             HHHhCCCccccccCCC--CcHHHHHHhcCCH---HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhcc
Q 042906          278 LINKYPDAIEIRDNSD--RSILHVAAKHGNW---NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK  352 (415)
Q Consensus       278 Ll~~~~~~~~~~~~~g--~t~l~~A~~~~~~---~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  352 (415)
                      |+++|++ ++.+|..|  .||||+|...+..   +++++|+++|++   +|.+|..|+||||+|+..++.+++++|+++ 
T Consensus       358 LIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD---IN~kD~~G~TPLh~Aa~~~n~eivelLLs~-  432 (631)
T PHA02792        358 ILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD---INKIDKHGRSILYYCIESHSVSLVEWLIDN-  432 (631)
T ss_pred             HHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc---cccccccCcchHHHHHHcCCHHHHHHHHHC-
Confidence            9999999 58888775  6999998876654   468899999988   999999999999999999999999999987 


Q ss_pred             CcCccccccccccchhHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHhh
Q 042906          353 SVNIRAKNRSARNNIALEIAEITRAD---GKEIQKHLTLKALKTAYAKRAL  400 (415)
Q Consensus       353 g~~~~~~d~~g~~~t~l~~a~~~~~~---~~~~~~~~~~~~L~~~Ga~~~~  400 (415)
                      |++++.+|..|  .|||++|......   .......+++++|+++|.++..
T Consensus       433 GADIN~kD~~G--~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~~  481 (631)
T PHA02792        433 GADINITTKYG--STCIGICVILAHACIPEIAELYIKILEIILSKLPTIEC  481 (631)
T ss_pred             CCCCCCcCCCC--CCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChhH
Confidence            99999999999  9999999874222   2223456799999999987654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-37  Score=285.50  Aligned_cols=283  Identities=15%  Similarity=0.176  Sum_probs=223.2

Q ss_pred             ChhHHHHHHhhccccccCCCCCCCHHHHHHHh--CCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHh----
Q 042906           13 DENKIKQLALRQNIFSTSSPGGNTVLHMAVRF--RNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARI----   86 (415)
Q Consensus        13 ~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~----   86 (415)
                      +++.|+.|+..+. ++.. ..|.|+++.+...  ++.+++++|++.         |++++.++..|.||||.|+.+    
T Consensus        17 ~~~~v~~ll~~~~-~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~---------Gadvn~~d~~g~TpL~~~~~n~~~~   85 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINL---------GANVNGLDNEYSTPLCTILSNIKDY   85 (489)
T ss_pred             cHHHHHHHHhcCC-hhhh-cccchHHHHHHhCCCCCHHHHHHHHHC---------CCCCCCCCCCCCChHHHHHHhHHhH
Confidence            5789999997653 3333 3577877754444  478999999997         677888999999999998864    


Q ss_pred             -CcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcC---CHHHHHHHHhCCCCCcccccccCCcHHHH
Q 042906           87 -GNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ---HKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (415)
Q Consensus        87 -g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~  162 (415)
                       ++.+++++|+++|++++             .+|..|.||||+|+..+   +.+++++|++.|+++. ..+..|.||||+
T Consensus        86 ~~~~~iv~~Ll~~GadiN-------------~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~  151 (489)
T PHA02798         86 KHMLDIVKILIENGADIN-------------KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQV  151 (489)
T ss_pred             HhHHHHHHHHHHCCCCCC-------------CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHH
Confidence             67899999999999887             56889999999999875   7899999999999876 677778888887


Q ss_pred             HHHcCC---hhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhccc-ccCCCCHHHHHHhc---
Q 042906          163 AIDARL---NDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRL-DWHQRNPLHYAAAS---  235 (415)
Q Consensus       163 a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~t~l~~a~~~---  235 (415)
                      |+..++   .+++++|++.+.+                                    ++.. +..|.||+|.++..   
T Consensus       152 a~~~~~~~~~~vv~~Ll~~gad------------------------------------in~~~~~~~~t~Lh~~~~~~~~  195 (489)
T PHA02798        152 YLQSNHHIDIEIIKLLLEKGVD------------------------------------INTHNNKEKYDTLHCYFKYNID  195 (489)
T ss_pred             HHHcCCcchHHHHHHHHHhCCC------------------------------------cccccCcCCCcHHHHHHHhccc
Confidence            777665   5666665554433                                    2222 33466777766653   


Q ss_pred             -CCHHHHHHHHHhchhhhhccCCCCCCHHH-------HHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH
Q 042906          236 -GNVKMAQRLLEESKQLAYKRDCNGETPLH-------LAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN  307 (415)
Q Consensus       236 -~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~-------~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  307 (415)
                       ++.+++++|+++|++++ ..+..+.++++       .+...+..+++++|+. +++ ++.+|..|+||||+|+..++.+
T Consensus       196 ~~~~~ivk~Li~~Ga~i~-~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~  272 (489)
T PHA02798        196 RIDADILKLFVDNGFIIN-KENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRK  272 (489)
T ss_pred             cCCHHHHHHHHHCCCCcc-cCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHH
Confidence             46788888888888776 45666777765       2344567888888776 566 6999999999999999999999


Q ss_pred             HHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccccc
Q 042906          308 IVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA  363 (415)
Q Consensus       308 ~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g  363 (415)
                      ++++|++.|++   ++.+|..|+|||++|+..++.++++.|+++ |++++......
T Consensus       273 ~v~~LL~~GAd---in~~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~i~~~~  324 (489)
T PHA02798        273 IFEYLLQLGGD---INIITELGNTCLFTAFENESKFIFNSILNK-KPNKNTISYTY  324 (489)
T ss_pred             HHHHHHHcCCc---ccccCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHHHHHHH
Confidence            99999999988   999999999999999999999999999986 89988775544

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.6e-38  Score=281.60  Aligned_cols=245  Identities=19%  Similarity=0.270  Sum_probs=179.1

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhh
Q 042906           34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLES  113 (415)
Q Consensus        34 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  113 (415)
                      .+++||.|+..|+.+++++|++.         |++++..+..|.||||+|+..|+.+++++|+++|++++          
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~---------g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----------   62 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI---------GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD----------   62 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC---------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc----------
Confidence            46789999999999999999987         45667777889999999999999999999999888765          


Q ss_pred             hhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchh
Q 042906          114 LFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELT  193 (415)
Q Consensus       114 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  193 (415)
                         ..+..+.||||.|+..|+.+++++|++.|+......+..|.||||+|+..++.+++++                   
T Consensus        63 ---~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~-------------------  120 (413)
T PHA02875         63 ---VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKL-------------------  120 (413)
T ss_pred             ---ccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHH-------------------
Confidence               3456788999999999999999999988876544444445555555555544444444                   


Q ss_pred             HHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHH
Q 042906          194 LLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK  273 (415)
Q Consensus       194 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  273 (415)
                                      |++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++.+ ..+..|.||||+|+..|+.+
T Consensus       121 ----------------Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~TpL~~A~~~g~~e  182 (413)
T PHA02875        121 ----------------LIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD-IEDCCGCTPLIIAMAKGDIA  182 (413)
T ss_pred             ----------------HHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHH
Confidence                            4444433 45556667777777777777777777777777666 46777777777777777777


Q ss_pred             HHHHHHHhCCCccccccCCC-CcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHh
Q 042906          274 VLKLLINKYPDAIEIRDNSD-RSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM  338 (415)
Q Consensus       274 ~v~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~  338 (415)
                      ++++|+++|++ ++..+..| .||+|+|+..++.+++++|+++|++...+...+..+.||++++..
T Consensus       183 iv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        183 ICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             HHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence            77777777777 36666665 467777777777778888887777744333446677777776653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-37  Score=279.11  Aligned_cols=243  Identities=19%  Similarity=0.234  Sum_probs=221.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHc
Q 042906          122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMR  201 (415)
Q Consensus       122 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~  201 (415)
                      .+++|+.|+..|+.+++++|++.|+++. ..+..|.||||+|+..++.+++++|++.+......  ...+.+|||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK--YPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc--CCCcccHHHHHHHC
Confidence            4789999999999999999999999886 66778999999999999999999999988765433  35678999999999


Q ss_pred             CCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 042906          202 QNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK  281 (415)
Q Consensus       202 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  281 (415)
                      |+.+.+++|++.+....+..+..|.||||+|+..++.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999877666667789999999999999999999999999987 6788999999999999999999999999


Q ss_pred             CCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCC-cHHHHHHhcCChHHHHHHhhccCcCcccc-
Q 042906          282 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGN-TPLHLAAMGLHSDVVFTLSRHKSVNIRAK-  359 (415)
Q Consensus       282 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~-  359 (415)
                      +++ ++.+|..|.||||+|+..|+.+++++|++.|++   ++..+..|. ||+|+|+..++.+++++|+++ |+|++.. 
T Consensus       158 g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~---~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~-gad~n~~~  232 (413)
T PHA02875        158 KAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN---IDYFGKNGCVAALCYAIENNKIDIVRLFIKR-GADCNIMF  232 (413)
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCcCCCCCCchHHHHHHHcCCHHHHHHHHHC-CcCcchHh
Confidence            998 699999999999999999999999999999988   888888774 899999999999999999986 9999876 


Q ss_pred             --ccccccchhHHHHHHh
Q 042906          360 --NRSARNNIALEIAEIT  375 (415)
Q Consensus       360 --d~~g~~~t~l~~a~~~  375 (415)
                        +.+|  .||++++...
T Consensus       233 ~~~~~~--~t~l~~~~~~  248 (413)
T PHA02875        233 MIEGEE--CTILDMICNM  248 (413)
T ss_pred             hcCCCc--hHHHHHHHhh
Confidence              5667  9999998764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-39  Score=233.95  Aligned_cols=208  Identities=28%  Similarity=0.353  Sum_probs=118.8

Q ss_pred             cHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC
Q 042906          158 TPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN  237 (415)
Q Consensus       158 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  237 (415)
                      ++.+.++......-++.+++..+.+.....+.++.+|||+|+..|+.+++.+|+......++.+|..|+||||.|+..|+
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            34444444444444555555555444444445556666666666666666666655544555555556666666666666


Q ss_pred             HHHHHHHHHh-chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCC
Q 042906          238 VKMAQRLLEE-SKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP  316 (415)
Q Consensus       238 ~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  316 (415)
                      .++++.|+.+ +++++ ..+..|.|+||+|+..|+.+++++|+++|+. ++++|..|+||||.|+.-|.++++++|+..|
T Consensus        85 ~evVk~Ll~r~~advn-a~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVN-ATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             HHHHHHHhcCCCCCcc-eecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            6666666655 44444 4555566666666666666666666666655 3566666666666666666666666666655


Q ss_pred             CcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       317 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      +.   +|..|+.|+||||.|..-|+.++..+|+++ |++++.+|++|   ||+..|.-
T Consensus       163 a~---~n~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edke~---t~~~~a~~  213 (226)
T KOG4412|consen  163 AP---LNTQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDKEG---TALRIACN  213 (226)
T ss_pred             CC---CCcccccCccHHHHHHhccCchHHHHHHHh-ccceeeccccC---chHHHHHH
Confidence            44   556666666666666555555555555554 56666666554   55555544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=9e-38  Score=259.70  Aligned_cols=223  Identities=22%  Similarity=0.283  Sum_probs=190.9

Q ss_pred             HHHHHHcCChhHHHHHHhhcc-----ccccCCCCCCCHHHHHHHhCCHHHHHHHHhccch-HHHHHHhHhhhcCCCCCCC
Q 042906            5 LLEVLRNGDENKIKQLALRQN-----IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNF-IALRLHYSLLRQKNLMDET   78 (415)
Q Consensus         5 L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~~g~t   78 (415)
                      .+.|++.|.+..+..|+....     ++-....+|.|||..|+++|+.++|+||+++... +.. ......+.....|-+
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~-~GsV~FDge~Iegap   86 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQ-GGSVRFDGETIEGAP   86 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccC-CceEEeCCcccCCCc
Confidence            458999999999999988753     2223446788999999999999999999996322 111 112234455666889


Q ss_pred             hHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCc
Q 042906           79 PLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQT  158 (415)
Q Consensus        79 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  158 (415)
                      ||..|+..|++++|+.|+++|++++.             ......|||-.||..|++++|++|+++|+++. ..+..|.|
T Consensus        87 pLWaAsaAGHl~vVk~L~~~ga~VN~-------------tT~TNStPLraACfDG~leivKyLvE~gad~~-IanrhGhT  152 (615)
T KOG0508|consen   87 PLWAASAAGHLEVVKLLLRRGASVND-------------TTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHT  152 (615)
T ss_pred             hhhHHhccCcHHHHHHHHHhcCcccc-------------ccccCCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCe
Confidence            99999999999999999999999884             45567799999999999999999999999987 88999999


Q ss_pred             HHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCH
Q 042906          159 PLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV  238 (415)
Q Consensus       159 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  238 (415)
                      .|++|+..|+.+++++|++.+.+.....  ..|.|+||.++..|+.++++.|+..+..  -..|..|.|||..|...|+.
T Consensus       153 cLmIa~ykGh~~I~qyLle~gADvn~ks--~kGNTALH~caEsG~vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  153 CLMIACYKGHVDIAQYLLEQGADVNAKS--YKGNTALHDCAESGSVDIVQLLLKHGAK--IDVDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             eEEeeeccCchHHHHHHHHhCCCcchhc--ccCchHHHhhhhcccHHHHHHHHhCCce--eeecCCCCchHHHHhhhcch
Confidence            9999999999999999999999877665  8999999999999999999999999874  34577799999999999999


Q ss_pred             HHHHHHHH
Q 042906          239 KMAQRLLE  246 (415)
Q Consensus       239 ~~~~~Ll~  246 (415)
                      +++++|++
T Consensus       229 ~iVe~L~~  236 (615)
T KOG0508|consen  229 DIVERLLQ  236 (615)
T ss_pred             HHHHHHhc
Confidence            99999994

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-37  Score=283.41  Aligned_cols=285  Identities=18%  Similarity=0.175  Sum_probs=231.2

Q ss_pred             CHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHH--hCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCC
Q 042906           46 NQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR--IGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGN  123 (415)
Q Consensus        46 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~  123 (415)
                      ..+.|+.|++.+.          .+.. ..+.|+++.+..  .++.++|++|+++|++++             .++..|.
T Consensus        17 ~~~~v~~ll~~~~----------~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn-------------~~d~~g~   72 (489)
T PHA02798         17 KLSTVKLLIKSCN----------PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVN-------------GLDNEYS   72 (489)
T ss_pred             cHHHHHHHHhcCC----------hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCC-------------CCCCCCC
Confidence            4678999998632          1111 346677764444  347899999999999887             5688999


Q ss_pred             hHHHHHHHc-----CCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHH
Q 042906          124 TPLHNAVTN-----QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFV  198 (415)
Q Consensus       124 t~l~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a  198 (415)
                      ||||.|+.+     ++.+++++|++.|+++. ..+..|.||||+|+..+..                             
T Consensus        73 TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~-----------------------------  122 (489)
T PHA02798         73 TPLCTILSNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYI-----------------------------  122 (489)
T ss_pred             ChHHHHHHhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCc-----------------------------
Confidence            999998864     56889999999998876 5667777777777654311                             


Q ss_pred             HHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC---HHHHHHHHHhchhhhhccCCCCCCHHHHHHHc----CC
Q 042906          199 VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN---VKMAQRLLEESKQLAYKRDCNGETPLHLAAEN----GK  271 (415)
Q Consensus       199 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----~~  271 (415)
                         ++.+++++|++.+.+ ++..+..|.||||+|+..++   .+++++|+++|++++...+..|.||||.++..    ++
T Consensus       123 ---~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~  198 (489)
T PHA02798        123 ---NNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRID  198 (489)
T ss_pred             ---ChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCC
Confidence               245666777776655 78888999999999999987   99999999999998854456789999998765    48


Q ss_pred             HHHHHHHHHhCCCccccccCCCCcHHH-------HHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHH
Q 042906          272 LKVLKLLINKYPDAIEIRDNSDRSILH-------VAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDV  344 (415)
Q Consensus       272 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~-------~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  344 (415)
                      .+++++|+++|++ ++..+..|.++++       ++...++.+++++|+.. ++   +|.+|..|+||||+|+..++.++
T Consensus       199 ~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~-~d---vN~~d~~G~TPL~~A~~~~~~~~  273 (489)
T PHA02798        199 ADILKLFVDNGFI-INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY-ID---INQVDELGFNPLYYSVSHNNRKI  273 (489)
T ss_pred             HHHHHHHHHCCCC-cccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc-CC---CCCcCcCCccHHHHHHHcCcHHH
Confidence            9999999999999 5888888999876       24456678888888764 55   99999999999999999999999


Q ss_pred             HHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHH
Q 042906          345 VFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAE  403 (415)
Q Consensus       345 ~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~  403 (415)
                      +++|+++ |+|++.+|..|  +|||++|++       .+..++++.|+++|++++.-..
T Consensus       274 v~~LL~~-GAdin~~d~~G--~TpL~~A~~-------~~~~~iv~~lL~~~~~~~~i~~  322 (489)
T PHA02798        274 FEYLLQL-GGDINIITELG--NTCLFTAFE-------NESKFIFNSILNKKPNKNTISY  322 (489)
T ss_pred             HHHHHHc-CCcccccCCCC--CcHHHHHHH-------cCcHHHHHHHHccCCCHHHHHH
Confidence            9999986 99999999999  999999999       5788899999999998765433

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.4e-38  Score=226.66  Aligned_cols=211  Identities=24%  Similarity=0.320  Sum_probs=181.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCC-CCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHH
Q 042906          121 EGNTPLHNAVTNQHKRVIRILVEKDS-VPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVV  199 (415)
Q Consensus       121 ~g~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~  199 (415)
                      .+.++.+.++......-++.+++... ......++.|+||||+|+..|+.+++.+|+. .+.......+..|.+|||+|+
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhhhhh
Confidence            35678888888888888888888776 4444556699999999999999999999996 444444455788999999999


Q ss_pred             HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHH
Q 042906          200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI  279 (415)
Q Consensus       200 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  279 (415)
                      ..|+.++++.|+.+.+.+++..+..|.|+||+|+..|..+++++|++.|+.+. ..|..|.||||-|+.-|.++++++|+
T Consensus        81 s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc-ccccccCchhHHHHhccchhhHHHHH
Confidence            99999999999999766799999999999999999999999999999998887 68999999999999999999999999


Q ss_pred             HhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHh
Q 042906          280 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM  338 (415)
Q Consensus       280 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~  338 (415)
                      ..++. +|..|..|+||||.|...++.+...+|++.|++   +...|+.| ||+..|+-
T Consensus       160 ~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd---~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  160 SQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD---TDREDKEG-TALRIACN  213 (226)
T ss_pred             hcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhccc---eeeccccC-chHHHHHH
Confidence            99977 699999999999999888899999999999988   88888888 99877654

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.4e-36  Score=266.43  Aligned_cols=325  Identities=15%  Similarity=0.104  Sum_probs=249.1

Q ss_pred             HHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHH-hCCHHHHHHHHhccchHHH---------------------H
Q 042906            6 LEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVR-FRNQQVIREILRQQNFIAL---------------------R   63 (415)
Q Consensus         6 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~---------------------~   63 (415)
                      +.|..+|++|+|+.|+.+|++++..+..|.+|+|+|+. .++.|++++|++.|+++..                     .
T Consensus        77 ~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~  156 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWD  156 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchh
Confidence            46788999999999999999999999999999999966 6999999999999986321                     1


Q ss_pred             HH------hHhhhcCCCCCCChHHHHHHhC-------cHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHH
Q 042906           64 LH------YSLLRQKNLMDETPLHIAARIG-------NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV  130 (415)
Q Consensus        64 ~~------~~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  130 (415)
                      .+      +-.++.++..|.||||+|+.++       +.++++.|+++|++++             ..|..|.||||+|+
T Consensus       157 ~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-------------~~d~~g~t~l~~~~  223 (631)
T PHA02792        157 DELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-------------YYTYREHTTLYYYV  223 (631)
T ss_pred             hhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-------------ccCCCCChHHHHHH
Confidence            11      1245678888999999999999       8999999999999887             46788999999999


Q ss_pred             HcC--CHHHHHHHHhCCCCCcccccccCCcHHHHHH--Hc----CChh--HHHHHhhhCCCC--ccCCCC----------
Q 042906          131 TNQ--HKRVIRILVEKDSVPSSYINKAYQTPLSIAI--DA----RLND--SACFIIDKSPES--LNTTRL----------  188 (415)
Q Consensus       131 ~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~--~~----~~~~--~~~~ll~~~~~~--~~~~~~----------  188 (415)
                      .+.  +.|++++|++..- .  ....  ...|.--.  +.    .+.+  ++..|++.+...  ......          
T Consensus       224 ~~~~i~~ei~~~L~~~~~-~--~~~~--~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~  298 (631)
T PHA02792        224 DKCDIKREIFDALFDSNY-S--GNEL--MNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSI  298 (631)
T ss_pred             HcccchHHHHHHHHhccc-c--ccch--HhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHH
Confidence            999  8999999998421 1  1111  12222111  11    1233  777777655411  111000          


Q ss_pred             -----CcchhHHHHHHHcC--CHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCC--C
Q 042906          189 -----PDELTLLHFVVMRQ--NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCN--G  259 (415)
Q Consensus       189 -----~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--g  259 (415)
                           ..-+..||.-..++  +.+++++|++.+....   ......+++.|+..++.+++++|+++|++++ ..+..  +
T Consensus       299 ~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN-~kD~~g~~  374 (631)
T PHA02792        299 LKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVVV-EDDDNIIN  374 (631)
T ss_pred             HHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCchh-hhcCCCCC
Confidence                 11122344444455  6788999999997632   1224567899999999999999999999987 45655  4


Q ss_pred             CCHHHHHHHcCCH---HHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHH
Q 042906          260 ETPLHLAAENGKL---KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA  336 (415)
Q Consensus       260 ~t~L~~A~~~~~~---~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A  336 (415)
                      .||||.|+.....   +++++|+++|++ ++.+|..|.||||+|+..++.+++++|+++|++   ++.+|..|+|||++|
T Consensus       375 ~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD---IN~kD~~G~TpL~~A  450 (631)
T PHA02792        375 IMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNGAD---INITTKYGSTCIGIC  450 (631)
T ss_pred             hhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHH
Confidence            6999998877654   468999999999 699999999999999999999999999999988   999999999999999


Q ss_pred             Hh---cC-------ChHHHHHHhhccCcCcc
Q 042906          337 AM---GL-------HSDVVFTLSRHKSVNIR  357 (415)
Q Consensus       337 ~~---~~-------~~~~~~~Ll~~~g~~~~  357 (415)
                      +.   .+       ..++++.|+++ |.++.
T Consensus       451 ~~~~~~~~~~i~~~~~~il~lLLs~-~p~i~  480 (631)
T PHA02792        451 VILAHACIPEIAELYIKILEIILSK-LPTIE  480 (631)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhc-CCChh
Confidence            86   22       25678999976 76665

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-35  Score=245.49  Aligned_cols=183  Identities=20%  Similarity=0.204  Sum_probs=140.0

Q ss_pred             HHHHHHHcCChhHHHHHHhh-c--------cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCC
Q 042906            4 ELLEVLRNGDENKIKQLALR-Q--------NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNL   74 (415)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~-~--------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   74 (415)
                      +|..|+++|+.++|++|+++ +        ..++.....|-+||-.|+..|++++||.|++.         ++++|....
T Consensus        45 PL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~---------ga~VN~tT~  115 (615)
T KOG0508|consen   45 PLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR---------GASVNDTTR  115 (615)
T ss_pred             ceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh---------cCccccccc
Confidence            56677888888888888873 2        33444445677888888888888888888887         466777777


Q ss_pred             CCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccc
Q 042906           75 MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINK  154 (415)
Q Consensus        75 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  154 (415)
                      ...|||.-||.-|++++|++|+++|++++             ..|..|.|.|++|+..|+.+++++|++.|++++ .++.
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~-------------IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~ks~  181 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPE-------------IANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-AKSY  181 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCc-------------ccccCCCeeEEeeeccCchHHHHHHHHhCCCcc-hhcc
Confidence            77788888888888888888888888766             567788888888888888888888888888776 6778


Q ss_pred             cCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHh
Q 042906          155 AYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILG  212 (415)
Q Consensus       155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  212 (415)
                      .|+|+||.|+..|+.+++++|+.++......   ..|.|||..|...|..+++.+|++
T Consensus       182 kGNTALH~caEsG~vdivq~Ll~~ga~i~~d---~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  182 KGNTALHDCAESGSVDIVQLLLKHGAKIDVD---GHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cCchHHHhhhhcccHHHHHHHHhCCceeeec---CCCCchHHHHhhhcchHHHHHHhc
Confidence            8888888888888888888888776654443   357788888888888888888874

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.6e-35  Score=266.98  Aligned_cols=254  Identities=18%  Similarity=0.177  Sum_probs=212.0

Q ss_pred             hHHHHHHHc--CChhHHHHHHhhccccccCCCCCCCHHHHHHHhC------CHHHHHHHHhccchHHHHHHhHhhhcCCC
Q 042906            3 QELLEVLRN--GDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFR------NQQVIREILRQQNFIALRLHYSLLRQKNL   74 (415)
Q Consensus         3 ~~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   74 (415)
                      ++|+.++..  ++.++++.|++.|++++..+ .+.||||.|+..+      +.+++++|++.         |++++.++.
T Consensus        37 t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~---------Gadin~~d~  106 (494)
T PHA02989         37 SILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKF---------GADINLKTF  106 (494)
T ss_pred             CHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHC---------CCCCCCCCC
Confidence            345554443  37899999999999999876 5799999998754      57899999998         677888999


Q ss_pred             CCCChHHHHHHh---CcHHHHHHHHhhcccc-ccCCCcchhhhhhhcccCCCChHHHHHHHc--CCHHHHHHHHhCCCCC
Q 042906           75 MDETPLHIAARI---GNRAIVSEIVKYVPAV-NQAGPLPVLESLFRMRDIEGNTPLHNAVTN--QHKRVIRILVEKDSVP  148 (415)
Q Consensus        75 ~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~--~~~~~v~~Ll~~~~~~  148 (415)
                      .|.||||.|+..   |+.+++++|+++|+++ +             .+|..|.||||+|+..  ++.+++++|++.|+++
T Consensus       107 ~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~-------------~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi  173 (494)
T PHA02989        107 NGVSPIVCFIYNSNINNCDMLRFLLSKGINVND-------------VKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNL  173 (494)
T ss_pred             CCCcHHHHHHHhcccCcHHHHHHHHHCCCCccc-------------ccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            999999998765   6799999999999998 4             4688999999999864  6899999999999998


Q ss_pred             cccccccCCcHHHHHHHcC----ChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHc------CCHHHHHHHHhcChhhh
Q 042906          149 SSYINKAYQTPLSIAIDAR----LNDSACFIIDKSPESLNTTRLPDELTLLHFVVMR------QNYDIMVKILGTNKELI  218 (415)
Q Consensus       149 ~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~------~~~~~~~~ll~~~~~~~  218 (415)
                      ....+..|.||+|+|+..+    +.+++++|++.+.+.....  ..+.++++.++..      +..+++.+++. + ..+
T Consensus       174 ~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~--~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~-adv  249 (494)
T PHA02989        174 FEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN--NGSESVLESFLDNNKILSKKEFKVLNFILK-Y-IKI  249 (494)
T ss_pred             cccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC--CccccHHHHHHHhchhhcccchHHHHHHHh-C-CCC
Confidence            7546788999999997764    8899999999988765443  4678888876653      34566666554 4 458


Q ss_pred             cccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q 042906          219 DRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD  284 (415)
Q Consensus       219 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  284 (415)
                      +.+|..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..++.++++.|++.++.
T Consensus       250 n~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin-~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        250 NKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY-NVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            8888999999999999999999999999999887 6788999999999999999999999988765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=4.2e-32  Score=235.56  Aligned_cols=191  Identities=29%  Similarity=0.435  Sum_probs=163.9

Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccc-cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLD-WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA  267 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  267 (415)
                      ..|.++||+|+.+++.+++++|++++++ +|... .-+.||||+|+++|+..++..|+++|+++. .+|..|.+|+|.|+
T Consensus        76 ~~g~tlLHWAAiNNrl~v~r~li~~gad-vn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt-~~D~~G~~~lHla~  153 (600)
T KOG0509|consen   76 REGVTLLHWAAINNRLDVARYLISHGAD-VNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPT-LKDKQGLTPLHLAA  153 (600)
T ss_pred             cCCccceeHHHHcCcHHHHHHHHHcCCC-ccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCc-eecCCCCcHHHHHH
Confidence            3566666666666666666667666665 55554 567899999999999999999999999998 68999999999999


Q ss_pred             HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCC-CCCCcHHHHHHhcCChHHHH
Q 042906          268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVD-RNGNTPLHLAAMGLHSDVVF  346 (415)
Q Consensus       268 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~  346 (415)
                      +.++..++-+|+.++++ ++.+|.+|+||||+|+.++....+..|++.++.   ++.+| ..|.||||.|+..|+..++.
T Consensus       154 ~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~---~~~~d~~~g~TpLHwa~~~gN~~~v~  229 (600)
T KOG0509|consen  154 QFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS---LLLTDDNHGNTPLHWAVVGGNLTAVK  229 (600)
T ss_pred             HhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc---ccccccccCCchHHHHHhcCCcceEe
Confidence            99999999999999988 699999999999999999999889999999988   88888 89999999999999999999


Q ss_pred             HHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042906          347 TLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR  398 (415)
Q Consensus       347 ~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~  398 (415)
                       |+.+.|++.+..|.+|  +||+++|.+.          .++..+...+.+.
T Consensus       230 -Ll~~g~~~~d~~~~~g--~tp~~LA~~~----------~~~~~~~h~~~~~  268 (600)
T KOG0509|consen  230 -LLLEGGADLDKTNTNG--KTPFDLAQER----------KLVAALHHDVVER  268 (600)
T ss_pred             -hhhhcCCcccccccCC--CCHHHHHHHh----------hhHHHhhccHHHh
Confidence             5556799999999999  9999999883          3445555555553

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=4.5e-32  Score=235.35  Aligned_cols=207  Identities=21%  Similarity=0.247  Sum_probs=183.2

Q ss_pred             HHHHHHHcCChhHHHHHHhh-ccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCC-CCCCChHH
Q 042906            4 ELLEVLRNGDENKIKQLALR-QNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKN-LMDETPLH   81 (415)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~~g~t~L~   81 (415)
                      .++.|++.|+++.++.+++. |.+++..|.+|.|+||+|+.+++++++++|+++         ++++|... .-+.||||
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~---------gadvn~~gG~l~stPLH  117 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISH---------GADVNAIGGVLGSTPLH  117 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHc---------CCCccccCCCCCCCcch
Confidence            57899999999999999999 999999999999999999999999999999998         45566666 55789999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~  161 (415)
                      +|+++|+..+|..|+++|++++             .+|.+|.+|+|.|++.++..+|-+|+.++++++ .+|..|+|||+
T Consensus       118 WAar~G~~~vv~lLlqhGAdpt-------------~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grTpLm  183 (600)
T KOG0509|consen  118 WAARNGHISVVDLLLQHGADPT-------------LKDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRTPLM  183 (600)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCc-------------eecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCCHHH
Confidence            9999999999999999999988             789999999999999999999999999997765 89999999999


Q ss_pred             HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhc
Q 042906          162 IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (415)
Q Consensus       162 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  235 (415)
                      +|+..+....+..|+.-++.. ...++..|.||||+|+..|+...+. |+.+++...+..+.+|.||+.+|...
T Consensus       184 wAaykg~~~~v~~LL~f~a~~-~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  184 WAAYKGFALFVRRLLKFGASL-LLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHhcccHHHHHHHHhcccc-cccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            999999988777777555543 3444578999999999999999999 77777777888888899999999766

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.1e-30  Score=206.23  Aligned_cols=175  Identities=17%  Similarity=0.208  Sum_probs=155.7

Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcC--CHHHHHHHHHhchhhhhccCCCCCCHHHHH
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG--NVKMAQRLLEESKQLAYKRDCNGETPLHLA  266 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  266 (415)
                      ..+.+||+.|+..++.+.++.|+..    .+..+..|.||||.|+..+  +.+++++|+++|++++...+..|.||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            4556999999999999999999864    4567888999999999854  899999999999999843335899999998


Q ss_pred             HHc---CCHHHHHHHHHhCCCccccccCCCCcHHHHHHh--cCCHHHHHHHhhCCCcccccccCCCCCCcHHHH-HHhcC
Q 042906          267 AEN---GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK--HGNWNIVSFILKSPEMENLINLVDRNGNTPLHL-AAMGL  340 (415)
Q Consensus       267 ~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~-A~~~~  340 (415)
                      +..   ++.+++++|+++|++ ++.+|..|.||||+|+.  .++.+++++|++.|++   ++.+|..|.||||. |+..+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad---in~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS---FLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---cccccCCCCcHHHHHHHhcC
Confidence            764   479999999999999 69999999999999986  4689999999999988   89999999999995 56788


Q ss_pred             ChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          341 HSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       341 ~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      +.+++++|+++ |++++.+|..|  +|||++|..
T Consensus       171 ~~~iv~~Ll~~-Gadi~~~d~~g--~tpl~la~~  201 (209)
T PHA02859        171 DKKIFDFLTSL-GIDINETNKSG--YNCYDLIKF  201 (209)
T ss_pred             CHHHHHHHHHc-CCCCCCCCCCC--CCHHHHHhh
Confidence            99999999986 99999999999  999999998

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.97  E-value=4.4e-31  Score=240.39  Aligned_cols=327  Identities=19%  Similarity=0.209  Sum_probs=298.5

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchh
Q 042906           32 PGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVL  111 (415)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  111 (415)
                      .+-.|+|-.||..|+-|+++.|+.+         |+++..+|..|.+||.+|+..|+..+|+.|+.+-++++.       
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~r---------ganiehrdkkgf~plImaatagh~tvV~~llk~ha~vea-------  818 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVR---------GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEA-------  818 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHh---------cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhh-------
Confidence            4568999999999999999999998         566788999999999999999999999999999998875       


Q ss_pred             hhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906          112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE  191 (415)
Q Consensus       112 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  191 (415)
                           ..|+.+.|+|.+||..|+.++|++|+..|++.. .++....||+.+|...|+.+++..|+..+...........|
T Consensus       819 -----Qsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklg  892 (2131)
T KOG4369|consen  819 -----QSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLG  892 (2131)
T ss_pred             -----hcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccC
Confidence                 578899999999999999999999999999876 78888899999999999999999999999888888777899


Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCC
Q 042906          192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK  271 (415)
Q Consensus       192 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  271 (415)
                      ..||..|..+|+......|++.+.+.......+.+|.|.+|+..|..+++..|+...+... .+-..|.|||+-++..|.
T Consensus       893 isPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anve-hRaktgltplme~AsgGy  971 (2131)
T KOG4369|consen  893 ISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVE-HRAKTGLTPLMEMASGGY  971 (2131)
T ss_pred             cchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhh-hhcccCCcccchhhcCCc
Confidence            9999999999999999999999988655667788999999999999999999999988877 578899999999999999


Q ss_pred             HHHHHHHHHhCCCccccc--cCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHh
Q 042906          272 LKVLKLLINKYPDAIEIR--DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (415)
Q Consensus       272 ~~~v~~Ll~~~~~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  349 (415)
                      +++-+.|+..|++. +..  -..-.|+|-+++..|+...+..|+...+.   +.++++.|.|+|.+|+..|+...+..|+
T Consensus       972 vdvg~~li~~gad~-nasPvp~T~dtalti~a~kGh~kfv~~lln~~at---v~v~NkkG~T~Lwla~~Gg~lss~~il~ 1047 (2131)
T KOG4369|consen  972 VDVGNLLIAAGADT-NASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT---VRVPNKKGCTVLWLASAGGALSSCPILV 1047 (2131)
T ss_pred             cccchhhhhccccc-ccCCCCCcCCccceeecCCCchhhhHHhhCCccc---eecccCCCCcccchhccCCccccchHHh
Confidence            99999999999984 432  23345899999999999999999998766   8999999999999999999999999999


Q ss_pred             hccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906          350 RHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY  395 (415)
Q Consensus       350 ~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G  395 (415)
                      ++ ++|++..|+..  .|+++-|.+       .++.+||+++...-
T Consensus      1048 ~~-~ad~d~qdnr~--~S~~maafR-------Kgh~~iVk~mv~~a 1083 (2131)
T KOG4369|consen 1048 SS-VADADQQDNRT--NSRTMAAFR-------KGHFAIVKKMVPPA 1083 (2131)
T ss_pred             hc-ccChhhhhccc--ccccHHHHH-------hchhheeccccCch
Confidence            87 99999999999  999999999       68888999887653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.9e-29  Score=215.88  Aligned_cols=241  Identities=15%  Similarity=0.140  Sum_probs=186.3

Q ss_pred             HHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHH--hCcHHHHH
Q 042906           16 KIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR--IGNRAIVS   93 (415)
Q Consensus        16 ~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~   93 (415)
                      ..++++.+|.+++....+|     +|+..+..+++++|+.+++++++.+   .+-.++..++|+||+++.  .|+.++|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~---~~~~~~~~~~~~L~~~~~n~~n~~eiV~  135 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFS---IIIKNCNSVQDLLLYYLSNAYVEIDIVD  135 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhh---hhhhccccccHHHHHHHHhcCCCHHHHH
Confidence            3467888999998887777     8999999999999999977654321   111477789999999999  89999999


Q ss_pred             HHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHH
Q 042906           94 EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSAC  173 (415)
Q Consensus        94 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  173 (415)
                      +|+++|++++.               .++.||+|.|+..++.+++++|+++|++...    .+.++++.           
T Consensus       136 ~LI~~GADIn~---------------~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n----~~~~~l~~-----------  185 (437)
T PHA02795        136 FMVDHGAVIYK---------------IECLNAYFRGICKKESSVVEFILNCGIPDEN----DVKLDLYK-----------  185 (437)
T ss_pred             HHHHCCCCCCC---------------CCCCCHHHHHHHcCcHHHHHHHHhcCCcccc----cccchhhh-----------
Confidence            99999999872               2458999999999999999999999975421    11222211           


Q ss_pred             HHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhh
Q 042906          174 FIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAY  253 (415)
Q Consensus       174 ~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  253 (415)
                                     ..+.+++|.+...++.+++++|+..+.+ ++.++..|.||||+|+..|+.+++++|+++|++++ 
T Consensus       186 ---------------~~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN-  248 (437)
T PHA02795        186 ---------------IIQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN-  248 (437)
T ss_pred             ---------------hhccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-
Confidence                           1344788888888888888888888765 78888889999999999999999999999998887 


Q ss_pred             ccCCCCCCHHHHHHHcCC--------HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCC
Q 042906          254 KRDCNGETPLHLAAENGK--------LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE  317 (415)
Q Consensus       254 ~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  317 (415)
                      ..+..|.||||+|+..|+        .+++++|++++++. +....   +.+..  ...+.++++.++++..
T Consensus       249 ~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI-~~~~~---~~~~~--~~~n~~~ik~lI~y~~  314 (437)
T PHA02795        249 AVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI-DCIKL---AILNN--TIENHDVIKLCIKYFM  314 (437)
T ss_pred             CcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC-CchhH---Hhhhc--ccchHHHHHHHHHHHH
Confidence            578889999999988874        68999999888873 43321   22111  1126788888887754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.7e-29  Score=214.47  Aligned_cols=198  Identities=13%  Similarity=0.028  Sum_probs=161.9

Q ss_pred             HHHHcCCHHHHHHHHhcChhhhc------ccccCCCCHHHHHHh--cCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906          197 FVVMRQNYDIMVKILGTNKELID------RLDWHQRNPLHYAAA--SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE  268 (415)
Q Consensus       197 ~a~~~~~~~~~~~ll~~~~~~~~------~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  268 (415)
                      +|+..+..+++++|+..+.. ++      .++.+++|+||.++.  .++.+++++|+++|++++.   ..+.||+|.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~-~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYM-EDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhcccc-cchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHH
Confidence            55556666666666666544 22      356678999999999  8999999999999999873   345899999999


Q ss_pred             cCCHHHHHHHHHhCCCccccc-----cCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChH
Q 042906          269 NGKLKVLKLLINKYPDAIEIR-----DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSD  343 (415)
Q Consensus       269 ~~~~~~v~~Ll~~~~~~~~~~-----~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  343 (415)
                      .++.+++++|+++|++..+..     +..+.+++|.|...++.+++++|+++|++   +|.+|..|+||||+|+..|+.+
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD---IN~kD~~G~TpLh~Aa~~g~~e  235 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED---INQLDAGGRTLLYRAIYAGYID  235 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC---cCcCCCCCCCHHHHHHHcCCHH
Confidence            999999999999998543332     23478899999999999999999999988   9999999999999999999999


Q ss_pred             HHHHHhhccCcCccccccccccchhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHhhcHHH
Q 042906          344 VVFTLSRHKSVNIRAKNRSARNNIALEIAEITRAD-GKEIQKHLTLKALKTAYAKRALSAEE  404 (415)
Q Consensus       344 ~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~-~~~~~~~~~~~~L~~~Ga~~~~~~~~  404 (415)
                      ++++|+++ |++++.+|..|  +||||+|+..-.. .....+.+++++|+++||+.+.....
T Consensus       236 iVelLL~~-GAdIN~~d~~G--~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~  294 (437)
T PHA02795        236 LVSWLLEN-GANVNAVMSNG--YTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA  294 (437)
T ss_pred             HHHHHHHC-CCCCCCcCCCC--CCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH
Confidence            99999986 99999999999  9999999984110 11123678999999999986665443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.7e-29  Score=199.26  Aligned_cols=176  Identities=18%  Similarity=0.180  Sum_probs=154.0

Q ss_pred             ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcC--CHHHHHHHHHhCCCcccccc-CCCCcHHH
Q 042906          222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENG--KLKVLKLLINKYPDAIEIRD-NSDRSILH  298 (415)
Q Consensus       222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~  298 (415)
                      ...+.+||+.|+..++.+.++.|++..   + ..+..|.||||+|+..+  +.+++++|+++|++ ++.++ ..|.||||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~---n-~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-vn~~~~~~g~TpLh   92 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV---N-DCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-VNFKTRDNNLSALH   92 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh---h-ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-CCccCCCCCCCHHH
Confidence            455679999999999999999999763   2 46788999999999854  89999999999999 58886 58999999


Q ss_pred             HHHhc---CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHh--cCChHHHHHHhhccCcCccccccccccchhHHHHH
Q 042906          299 VAAKH---GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM--GLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAE  373 (415)
Q Consensus       299 ~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~--~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~  373 (415)
                      +|+..   ++.+++++|+++|++   ++.+|..|.||||+|+.  .++.+++++|+++ |++++.+|.+|  .||||.++
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gad---in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~-gadin~~d~~g--~t~Lh~~a  166 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSS---ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS-GVSFLNKDFDN--NNILYSYI  166 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCcccccCCC--CcHHHHHH
Confidence            98764   479999999999988   99999999999999986  4689999999986 99999999999  99999755


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhc
Q 042906          374 ITRADGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKE  414 (415)
Q Consensus       374 ~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~~~~~~~~~~~~  414 (415)
                      ..      .++.+++++|+++||+++..+..+.++.+++..
T Consensus       167 ~~------~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        167 LF------HSDKKIFDFLTSLGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             Hh------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            42      356789999999999999999999999888753

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.96  E-value=4.1e-29  Score=227.67  Aligned_cols=324  Identities=17%  Similarity=0.206  Sum_probs=289.1

Q ss_pred             CChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChH
Q 042906            1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPL   80 (415)
Q Consensus         1 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L   80 (415)
                      ++..|-.|++.|+.|.+..|+..|+++..+|+.|.+||..|+-.|+..+|+.|+...+++        -...|..+.|+|
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~v--------eaQsdrtkdt~l  828 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV--------EAQSDRTKDTML  828 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhh--------hhhcccccCceE
Confidence            356788899999999999999999999999999999999999999999999999984433        334677899999


Q ss_pred             HHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCccc-ccccCCcH
Q 042906           81 HIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSY-INKAYQTP  159 (415)
Q Consensus        81 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~~~~~  159 (415)
                      .+||..|+.++|+.|+..|++-.             .++-...|||.+|...|..++++.|+..|..+... ....|..|
T Consensus       829 Slacsggr~~vvelLl~~ganke-------------hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisP  895 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKE-------------HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISP  895 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhcccc-------------ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcch
Confidence            99999999999999999998755             56778899999999999999999999999877543 35678899


Q ss_pred             HHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHH
Q 042906          160 LSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK  239 (415)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  239 (415)
                      |++|..+|+-...+.|++.+.+...... .+.+|+|.+|+..|..+++..||..... +..+-..|.|||+.++..|.++
T Consensus       896 Lmlatmngh~~at~~ll~~gsdiNaqIe-TNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyvd  973 (2131)
T KOG4369|consen  896 LMLATMNGHQAATLSLLQPGSDINAQIE-TNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYVD  973 (2131)
T ss_pred             hhhhhhccccHHHHHHhcccchhccccc-cccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCccc
Confidence            9999999999999999998887665543 5667999999999999999999987765 7777888999999999999999


Q ss_pred             HHHHHHHhchhhhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCc
Q 042906          240 MAQRLLEESKQLAYK-RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM  318 (415)
Q Consensus       240 ~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  318 (415)
                      +=..|+..|++.+.. ......|+|-+++..|+..+++.|+...+. +..+|..|.|+|-.|+.-|++..+.+|++++++
T Consensus       974 vg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad 1052 (2131)
T KOG4369|consen  974 VGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVSSVAD 1052 (2131)
T ss_pred             cchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhhcccC
Confidence            999999999988743 334567899999999999999999998888 699999999999999999999999999999988


Q ss_pred             ccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       319 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                         ++..|....++++-|.+.|+++||++....
T Consensus      1053 ---~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1053 ---ADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             ---hhhhhcccccccHHHHHhchhheeccccCc
Confidence               889999999999999999999999988754

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.95  E-value=8.1e-28  Score=211.93  Aligned_cols=261  Identities=26%  Similarity=0.328  Sum_probs=220.6

Q ss_pred             CChHHHHHHHcCChhHHHHHHhhc-------------cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhH
Q 042906            1 MDQELLEVLRNGDENKIKQLALRQ-------------NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYS   67 (415)
Q Consensus         1 ~~~~L~~A~~~g~~~~v~~ll~~~-------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   67 (415)
                      |++.+..|++.||.+.+..+++..             .+.+..|.+|.|.||.|+..|+.++++.|++.         .+
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~---------ea   73 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY---------EA   73 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc---------hh
Confidence            578899999999999999999875             66788889999999999999999999999997         67


Q ss_pred             hhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 042906           68 LLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV  147 (415)
Q Consensus        68 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  147 (415)
                      .++..+..|.+|||+|++.|+.+++++|+..+..++             ..+..|.||||.|++.|+.+++.+|++++++
T Consensus        74 ~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n-------------a~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad  140 (854)
T KOG0507|consen   74 LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN-------------AVNIENETPLHLAAQHGHLEVVFYLLKKNAD  140 (854)
T ss_pred             hhhhhhccCcceEEehhhcCcchHHHHHHhcccCCC-------------cccccCcCccchhhhhcchHHHHHHHhcCCC
Confidence            777888999999999999999999999999986554             6788999999999999999999999999998


Q ss_pred             CcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCC
Q 042906          148 PSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRN  227 (415)
Q Consensus       148 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  227 (415)
                      +. ..+..+.|++..|++.|..++++.|+.....             +.            .+...+   -...+..+.+
T Consensus       141 p~-i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~-------------~~------------~~~~~~---~~~~~~~~~~  191 (854)
T KOG0507|consen  141 PF-IRNNSKETVLDLASRFGRAEVVQMLLQKKFP-------------VQ------------SSLRVG---DIKRPFPAIY  191 (854)
T ss_pred             cc-ccCcccccHHHHHHHhhhhHHHHHHhhhccc-------------hh------------hcccCC---CCCCCCCCcC
Confidence            86 7888999999999999999999999965110             00            011111   2234556779


Q ss_pred             HHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc---C
Q 042906          228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH---G  304 (415)
Q Consensus       228 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~---~  304 (415)
                      |+|.|+++|+.++++.|++.|.+++.  ....-|+||.|+..|..++|++|++.|.. ...++.+|+|+|.+-...   .
T Consensus       192 plHlaakngh~~~~~~ll~ag~din~--~t~~gtalheaalcgk~evvr~ll~~gin-~h~~n~~~qtaldil~d~~~~~  268 (854)
T KOG0507|consen  192 PLHLAAKNGHVECMQALLEAGFDINY--TTEDGTALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALDIIIDLQENR  268 (854)
T ss_pred             CcchhhhcchHHHHHHHHhcCCCccc--ccccchhhhhHhhcCcchhhhHHHhhccc-cccccccchHHHHHHHhcchhh
Confidence            99999999999999999999999883  33456899999999999999999999998 599999999999887754   3


Q ss_pred             CHHHHHHHhhC
Q 042906          305 NWNIVSFILKS  315 (415)
Q Consensus       305 ~~~~~~~Ll~~  315 (415)
                      ..+++-++...
T Consensus       269 ~~ei~ga~~~~  279 (854)
T KOG0507|consen  269 RYEIAGAVKNF  279 (854)
T ss_pred             hhhhhhhhhcc
Confidence            44555555544

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=8.8e-28  Score=180.42  Aligned_cols=239  Identities=18%  Similarity=0.175  Sum_probs=197.0

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHH
Q 042906          118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHF  197 (415)
Q Consensus       118 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~  197 (415)
                      .+..|..-+-.+...++.+++.......++.....+..|+.+++.+.-.++.+.....+.++.......  ..+.+|+.+
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs--~~p~s~~sl  135 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVS--LMPWSPLSL  135 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccc--cccCChhhH
Confidence            355666777778888888888888888887777778889999999988888888888887766554444  566788888


Q ss_pred             HHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHH
Q 042906          198 VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKL  277 (415)
Q Consensus       198 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  277 (415)
                      ++...+.+....+.+..   +|..|..|.|||.||+..|+++++++|++.|+++. .......++|.+|+..|..++|+.
T Consensus       136 sVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~-~lgk~resALsLAt~ggytdiV~l  211 (296)
T KOG0502|consen  136 SVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD-ALGKYRESALSLATRGGYTDIVEL  211 (296)
T ss_pred             HHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCChh-hhhhhhhhhHhHHhcCChHHHHHH
Confidence            88877777666665543   78888899999999999999999999999999887 456677889999999999999999


Q ss_pred             HHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcc
Q 042906          278 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR  357 (415)
Q Consensus       278 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~  357 (415)
                      |+.++.+ +|..|.+|.|||-||++.++.++++.|++.|++   ++..+..|++++..|+..|+. +++..+++ -++.+
T Consensus       212 LL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd---~t~e~dsGy~~mdlAValGyr-~Vqqvie~-h~lkl  285 (296)
T KOG0502|consen  212 LLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGAD---VTQEDDSGYWIMDLAVALGYR-IVQQVIEK-HALKL  285 (296)
T ss_pred             HHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhcCCC---cccccccCCcHHHHHHHhhhH-HHHHHHHH-HHHHH
Confidence            9999988 699999999999999999999999999999888   888899999999999999987 77888875 57888


Q ss_pred             ccccccccchhHH
Q 042906          358 AKNRSARNNIALE  370 (415)
Q Consensus       358 ~~d~~g~~~t~l~  370 (415)
                      .+|+.-  +||+|
T Consensus       286 ~Q~~~~--~~~~~  296 (296)
T KOG0502|consen  286 CQDSEK--RTPLH  296 (296)
T ss_pred             hhcccC--CCCCC
Confidence            888877  77764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=4.1e-26  Score=219.85  Aligned_cols=278  Identities=19%  Similarity=0.123  Sum_probs=198.2

Q ss_pred             CCCChHHHHHHhCcHHHHHHHHhh--ccccccCCCcchhhhhhhcccCCCChHHH-HHHHcCCHHHHHHHHhCCCCCccc
Q 042906           75 MDETPLHIAARIGNRAIVSEIVKY--VPAVNQAGPLPVLESLFRMRDIEGNTPLH-NAVTNQHKRVIRILVEKDSVPSSY  151 (415)
Q Consensus        75 ~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~~~~~~~~~~g~t~l~-~A~~~~~~~~v~~Ll~~~~~~~~~  151 (415)
                      .++..++.|++.|+.+.++.+++.  +.+++             ..|..|.|||| .|+.+++.+++++|++.|.     
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in-------------~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----   77 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNIN-------------CPDRLGRSALFVAAIENENLELTELLLNLSC-----   77 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCC-------------CcCccchhHHHHHHHhcChHHHHHHHHhCCC-----
Confidence            457889999999999999999998  55444             67889999999 8888999999999999886     


Q ss_pred             ccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHH
Q 042906          152 INKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY  231 (415)
Q Consensus       152 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  231 (415)
                      .+..|.||||.|+.. ..+.+..++.........     +..+              .+..   +........|.||||+
T Consensus        78 ~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~~-----~~~~--------------~~~~---~~~~~~~~~G~TpLhl  134 (743)
T TIGR00870        78 RGAVGDTLLHAISLE-YVDAVEAILLHLLAAFRK-----SGPL--------------ELAN---DQYTSEFTPGITALHL  134 (743)
T ss_pred             CCCcChHHHHHHHhc-cHHHHHHHHHHHhhcccc-----cCch--------------hhhc---cccccccCCCCcHHHH
Confidence            466788999988862 223333332211110000     0000              0000   0011223468889999


Q ss_pred             HHhcCCHHHHHHHHHhchhhhhc-------------cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 042906          232 AAASGNVKMAQRLLEESKQLAYK-------------RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILH  298 (415)
Q Consensus       232 a~~~~~~~~~~~Ll~~~~~~~~~-------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  298 (415)
                      |+.+++.+++++|+++|++++..             ....|.||||.|+..++.+++++|+++|++ ++..|..|+||||
T Consensus       135 Aa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh  213 (743)
T TIGR00870       135 AAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLH  213 (743)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHH
Confidence            99888999999998888877621             113589999999999999999999999998 6999999999999


Q ss_pred             HHHhcC---------CHHHHHHHhhCCCccccc----ccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccccccc
Q 042906          299 VAAKHG---------NWNIVSFILKSPEMENLI----NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARN  365 (415)
Q Consensus       299 ~A~~~~---------~~~~~~~Ll~~~~~~~~~----~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~  365 (415)
                      +|+..+         ...+.+++++.++.....    +..|..|.||||+|+..|+.+++++|++. +.+........  
T Consensus       214 ~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~-~~~~kk~~a~~--  290 (743)
T TIGR00870       214 LLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI-KYKQKKFVAWP--  290 (743)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH-HHhcceeeccC--
Confidence            999986         233556666665543223    67899999999999999999999999974 55544445555  


Q ss_pred             chhHHHHHHhhhhh-HHHHHHHHHHHHHHHHHH
Q 042906          366 NIALEIAEITRADG-KEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       366 ~t~l~~a~~~~~~~-~~~~~~~~~~~L~~~Ga~  397 (415)
                      .+|.+++..+...- ..+...-++++++..|..
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  323 (743)
T TIGR00870       291 NGQQLLSLYWLEELDGWRRKQSVLELIVVFVIG  323 (743)
T ss_pred             cchHhHhhhccccCCcccccccHHHHHHHHHHh
Confidence            67887777764321 111222566777776653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=9.9e-26  Score=217.23  Aligned_cols=260  Identities=17%  Similarity=0.149  Sum_probs=181.6

Q ss_pred             ChHHHHHHHcCChhHHHHHHhh--ccccccCCCCCCCHHH-HHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCC
Q 042906            2 DQELLEVLRNGDENKIKQLALR--QNIFSTSSPGGNTVLH-MAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDET   78 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t   78 (415)
                      +..++.|++.|+.+.++.+++.  +.+++..|..|.|||| .|+..++.++++.|++.+         .    .+..|.|
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g---------~----~~~~G~T   84 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLS---------C----RGAVGDT   84 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCC---------C----CCCcChH
Confidence            4678999999999999999999  8899999999999999 888899999999999983         2    6778999


Q ss_pred             hHHHHHHhC---cHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCccccccc
Q 042906           79 PLHIAARIG---NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA  155 (415)
Q Consensus        79 ~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  155 (415)
                      |||.|+..+   ...++..+...+.+..   ............+..|.||||+|+.+++.+++++|+++|+++.. ... 
T Consensus        85 ~Lh~A~~~~~~~v~~ll~~l~~~~~~~~---~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~-~~~-  159 (743)
T TIGR00870        85 LLHAISLEYVDAVEAILLHLLAAFRKSG---PLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPA-RAC-  159 (743)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcccccC---chhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-CcC-
Confidence            999998732   2233344443332110   00000011112345799999999999999999999999998762 111 


Q ss_pred             CCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhc
Q 042906          156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (415)
Q Consensus       156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  235 (415)
                      +....                 ..   ........|.+||+.|+..++.++++.|++.+.+ ++..|..|+||||+|+..
T Consensus       160 ~~~~~-----------------~~---~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       160 GDFFV-----------------KS---QGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVME  218 (743)
T ss_pred             Cchhh-----------------cC---CCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhh
Confidence            11000                 00   0011124577899999999999988888887764 778888899999999887


Q ss_pred             C---------CHHHHHHHHHhchhhh------hccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 042906          236 G---------NVKMAQRLLEESKQLA------YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVA  300 (415)
Q Consensus       236 ~---------~~~~~~~Ll~~~~~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A  300 (415)
                      +         ...+.+++++.+....      ...+..|.|||++|+..|+.+++++|++.+.. ..........+.+.+
T Consensus       219 ~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~-~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       219 NEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK-QKKFVAWPNGQQLLS  297 (743)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHh-cceeeccCcchHhHh
Confidence            6         2335556665554321      23678899999999999999999999986544 133333444454443


Q ss_pred             H
Q 042906          301 A  301 (415)
Q Consensus       301 ~  301 (415)
                      .
T Consensus       298 ~  298 (743)
T TIGR00870       298 L  298 (743)
T ss_pred             h
Confidence            3

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1.1e-26  Score=174.44  Aligned_cols=236  Identities=21%  Similarity=0.261  Sum_probs=200.6

Q ss_pred             ccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHH
Q 042906          152 INKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY  231 (415)
Q Consensus       152 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  231 (415)
                      .+..|..-+-.+.+.++.+.......-.++...... ..|...++.+...++...+..++.++.. .+..+..+.+|+.+
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~-p~g~~~~~v~ap~~s~~k~sttltN~~r-gnevs~~p~s~~sl  135 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETD-PEGWSALLVAAPCGSVDKVSTTLTNGAR-GNEVSLMPWSPLSL  135 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCC-chhhhhhhhcCCCCCcceeeeeeccccc-CCccccccCChhhH
Confidence            344455556667788888888777766655544443 5699999999999999998888888766 67778889999999


Q ss_pred             HHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHH
Q 042906          232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF  311 (415)
Q Consensus       232 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  311 (415)
                      ++...+.+.+..+.+..   .+..|..|.|||++|+..|++++|++|++.|+++ ....+...++|.+|++.|..+++++
T Consensus       136 sVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~l  211 (296)
T KOG0502|consen  136 SVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVEL  211 (296)
T ss_pred             HHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHH
Confidence            99988877776665432   2368999999999999999999999999999995 8888888999999999999999999


Q ss_pred             HhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHH
Q 042906          312 ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKAL  391 (415)
Q Consensus       312 Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L  391 (415)
                      |+..+.+   +|..|-+|-|||.||++.++.++++.||.. |++++..+..|  .+++++|+..       +. .+|+..
T Consensus       212 LL~r~vd---VNvyDwNGgTpLlyAvrgnhvkcve~Ll~s-GAd~t~e~dsG--y~~mdlAVal-------Gy-r~Vqqv  277 (296)
T KOG0502|consen  212 LLTREVD---VNVYDWNGGTPLLYAVRGNHVKCVESLLNS-GADVTQEDDSG--YWIMDLAVAL-------GY-RIVQQV  277 (296)
T ss_pred             HHhcCCC---cceeccCCCceeeeeecCChHHHHHHHHhc-CCCcccccccC--CcHHHHHHHh-------hh-HHHHHH
Confidence            9999877   999999999999999999999999999986 99999999999  9999999993       33 399999


Q ss_pred             HHHHHHHhhcHHHHHH
Q 042906          392 KTAYAKRALSAEELQQ  407 (415)
Q Consensus       392 ~~~Ga~~~~~~~~~~~  407 (415)
                      |+.-+...+.+.+.+.
T Consensus       278 ie~h~lkl~Q~~~~~~  293 (296)
T KOG0502|consen  278 IEKHALKLCQDSEKRT  293 (296)
T ss_pred             HHHHHHHHhhcccCCC
Confidence            9999998887766544

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=3.3e-24  Score=207.66  Aligned_cols=177  Identities=24%  Similarity=0.284  Sum_probs=161.8

Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE  268 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  268 (415)
                      ....++|+.|+..|+.+.++.|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||.|+.
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin-~~d~~G~TpL~~A~~  600 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH-IRDANGNTALWNAIS  600 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC-CcCCCCCCHHHHHHH
Confidence            3556899999999999999999998876 88999999999999999999999999999999987 689999999999999


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906          269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (415)
Q Consensus       269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  348 (415)
                      .|+.+++++|++.++.. +  ...+.++||.|+..|+.+++++|+++|++   +|.+|..|+||||+|+..|+.+++++|
T Consensus       601 ~g~~~iv~~L~~~~~~~-~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad---in~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        601 AKHHKIFRILYHFASIS-D--PHAAGDLLCTAAKRNDLTAMKELLKQGLN---VDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             hCCHHHHHHHHhcCccc-C--cccCchHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            99999999999877652 3  34577999999999999999999999988   999999999999999999999999999


Q ss_pred             hhccCcCccccccccccchhHHHHHHh
Q 042906          349 SRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       349 l~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      +++ |++++..|..|. .||++++...
T Consensus       675 l~~-GAdv~~~~~~g~-~t~~~l~~~~  699 (823)
T PLN03192        675 IMN-GADVDKANTDDD-FSPTELRELL  699 (823)
T ss_pred             HHc-CCCCCCCCCCCC-CCHHHHHHHH
Confidence            986 999999998874 8999888763

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=1.1e-24  Score=211.01  Aligned_cols=165  Identities=19%  Similarity=0.226  Sum_probs=151.0

Q ss_pred             cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 042906          223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK  302 (415)
Q Consensus       223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~  302 (415)
                      ....++|+.|+..|+.++++.|++.|++++ ..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~~  600 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAIS  600 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHH
Confidence            345689999999999999999999999988 6899999999999999999999999999999 69999999999999999


Q ss_pred             cCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHH
Q 042906          303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEI  382 (415)
Q Consensus       303 ~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~  382 (415)
                      .|+.+++++|++.++.   .  ....|.++||.|+..|+.+++++|+++ |+|+|.+|.+|  +||||+|+.       .
T Consensus       601 ~g~~~iv~~L~~~~~~---~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G--~TpLh~A~~-------~  665 (823)
T PLN03192        601 AKHHKIFRILYHFASI---S--DPHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQG--ATALQVAMA-------E  665 (823)
T ss_pred             hCCHHHHHHHHhcCcc---c--CcccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCC--CCHHHHHHH-------C
Confidence            9999999999988754   2  234677999999999999999999986 99999999999  999999999       5


Q ss_pred             HHHHHHHHHHHHHHHHhhcHHH
Q 042906          383 QKHLTLKALKTAYAKRALSAEE  404 (415)
Q Consensus       383 ~~~~~~~~L~~~Ga~~~~~~~~  404 (415)
                      ++.+++++|+++||+++..+..
T Consensus       666 g~~~iv~~Ll~~GAdv~~~~~~  687 (823)
T PLN03192        666 DHVDMVRLLIMNGADVDKANTD  687 (823)
T ss_pred             CcHHHHHHHHHcCCCCCCCCCC
Confidence            8899999999999998776543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=1.5e-24  Score=191.49  Aligned_cols=241  Identities=23%  Similarity=0.255  Sum_probs=209.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCC------------CCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906          124 TPLHNAVTNQHKRVIRILVEKDS------------VPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE  191 (415)
Q Consensus       124 t~l~~A~~~~~~~~v~~Ll~~~~------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  191 (415)
                      +-+.-|++.++++.+..|++...            +-.+..+.+|.|.+|.|+.+|+.++.++|++...-.....  ..|
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d--~kg   82 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCD--TKG   82 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhh--ccC
Confidence            34567889999999999998521            1233457789999999999999999999998876655544  788


Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCC
Q 042906          192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK  271 (415)
Q Consensus       192 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  271 (415)
                      .+|||+|++.|+.+.++.++... +..+.....|.||||.|++.|+.+++.+|+.+++++. .++..+.|+|..|++.|.
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGR  160 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhh
Confidence            89999999999999999999988 4588888999999999999999999999999999998 689999999999999999


Q ss_pred             HHHHHHHHHhCCCc-------cccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHH
Q 042906          272 LKVLKLLINKYPDA-------IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDV  344 (415)
Q Consensus       272 ~~~v~~Ll~~~~~~-------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  344 (415)
                      .++++.|++..-+.       -..++..+.+|||.|+++|+.++++.|++.|.+   +|.....| |+||.|+.+|..++
T Consensus       161 ~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d---in~~t~~g-talheaalcgk~ev  236 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD---INYTTEDG-TALHEAALCGKAEV  236 (854)
T ss_pred             hHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC---cccccccc-hhhhhHhhcCcchh
Confidence            99999999873210       134556778999999999999999999999988   88777665 79999999999999


Q ss_pred             HHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          345 VFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       345 ~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      +.+|++- |++..++|..|  +|+|++....
T Consensus       237 vr~ll~~-gin~h~~n~~~--qtaldil~d~  264 (854)
T KOG0507|consen  237 VRFLLEI-GINTHIKNQHG--QTALDIIIDL  264 (854)
T ss_pred             hhHHHhh-ccccccccccc--hHHHHHHHhc
Confidence            9999985 99999999999  9999999885

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=2.1e-24  Score=174.64  Aligned_cols=163  Identities=24%  Similarity=0.263  Sum_probs=147.3

Q ss_pred             hcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHc-----CCHHHHHHHHHhCCCccccc-cC
Q 042906          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN-----GKLKVLKLLINKYPDAIEIR-DN  291 (415)
Q Consensus       218 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~~~~~~~~~-~~  291 (415)
                      +|..|.+|+|+||+++.+.++++|+.|++.|.......+.-|+||+++|+..     .+.++|..|.+.|..  |.+ ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV--NaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV--NAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc--chhhhh
Confidence            6778999999999999999999999999999876668899999999998753     578899999987754  544 46


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHH
Q 042906          292 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI  371 (415)
Q Consensus       292 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~  371 (415)
                      .|+|+|++|+.+|+.++++.||.-|++   +|.+|.+|.|+|++|++.||++++++||...++|+..+|.+|  .|+|.+
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAd---VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~Dg--STAl~I  413 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGAD---VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDG--STALSI  413 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCC---CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCC--chhhhh
Confidence            799999999999999999999999888   999999999999999999999999999999999999999999  999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHH
Q 042906          372 AEITRADGKEIQKHLTLKALKTA  394 (415)
Q Consensus       372 a~~~~~~~~~~~~~~~~~~L~~~  394 (415)
                      |.+       -++.+|.-+|..+
T Consensus       414 Ale-------agh~eIa~mlYa~  429 (452)
T KOG0514|consen  414 ALE-------AGHREIAVMLYAH  429 (452)
T ss_pred             HHh-------cCchHHHHHHHHH
Confidence            999       4777888777654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=8.2e-24  Score=164.18  Aligned_cols=140  Identities=18%  Similarity=0.270  Sum_probs=96.0

Q ss_pred             hcccccCCCCHHHHHHhcCCH----HHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHH---HHHHHHhCCCcccccc
Q 042906          218 IDRLDWHQRNPLHYAAASGNV----KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKV---LKLLINKYPDAIEIRD  290 (415)
Q Consensus       218 ~~~~~~~~~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---v~~Ll~~~~~~~~~~~  290 (415)
                      ++..+..+.+++|.|++.|+.    +++++|++.+...+ ..+..|.||||+|+..++.+.   +++|++.|++ ++.++
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d   90 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARE   90 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCC
Confidence            344555666777777777776    45555666666555 456677777777777766443   6777777776 46666


Q ss_pred             -CCCCcHHHHHHhcCCHHHHHHHhh-CCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccccc
Q 042906          291 -NSDRSILHVAAKHGNWNIVSFILK-SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA  363 (415)
Q Consensus       291 -~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g  363 (415)
                       ..|+||||+|+..++.+++++|++ .|++   ++.++..|+||||+|+..++.+++++|+++ |++++.++..|
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~  161 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVN---LGAINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLSIG  161 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcccCC
Confidence             367777777777777777777774 5655   667777777777777777777777777764 77777777766

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=8.2e-23  Score=158.58  Aligned_cols=136  Identities=18%  Similarity=0.190  Sum_probs=114.4

Q ss_pred             CcchhHHHHHHHcCCHHH----HHHHHhcChhhhcccccCCCCHHHHHHhcCCHH---HHHHHHHhchhhhhccC-CCCC
Q 042906          189 PDELTLLHFVVMRQNYDI----MVKILGTNKELIDRLDWHQRNPLHYAAASGNVK---MAQRLLEESKQLAYKRD-CNGE  260 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~----~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~Ll~~~~~~~~~~~-~~g~  260 (415)
                      ..+.++++.|+..|+.+.    ++++++.+. .++..+..|+||||+|+..++.+   ++++|+++|++++ .++ ..|.
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~-~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin-~~d~~~g~   95 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDGH-LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN-ARELGTGN   95 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcch-hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC-CCCCCCCC
Confidence            566789999999999854    444555554 47788889999999999998765   4899999999887 466 5899


Q ss_pred             CHHHHHHHcCCHHHHHHHHH-hCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCC
Q 042906          261 TPLHLAAENGKLKVLKLLIN-KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGN  330 (415)
Q Consensus       261 t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~  330 (415)
                      ||||+|+..++.+++++|++ .+++ ++.++..|.||||+|+..++.+++++|+++|++   ++.++..|.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~  162 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAV---CDDPLSIGL  162 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcccCCc
Confidence            99999999999999999995 6887 589999999999999999999999999999988   777776664

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=2.4e-23  Score=177.39  Aligned_cols=230  Identities=25%  Similarity=0.302  Sum_probs=131.2

Q ss_pred             HHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHH
Q 042906            4 ELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIA   83 (415)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A   83 (415)
                      .++.|+..|+.+-+..|+..|+.++..+.+|.|+||-+|...+.+||++|+++         ++.++..|..|+||||.|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~---------ga~Vn~~d~e~wtPlhaa  113 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVEN---------GANVNAQDNEGWTPLHAA  113 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHh---------cCCccccccccCCcchhh
Confidence            35667777777777777777777777777777777777777777777777776         566777777777777777


Q ss_pred             HHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHH
Q 042906           84 ARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA  163 (415)
Q Consensus        84 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a  163 (415)
                      +.+|+..++++|+.+|+++.             ..+..|..|+..+...-..+++..-+..-.          .+ +..+
T Consensus       114 ascg~~~i~~~li~~gA~~~-------------avNsdg~~P~dl~e~ea~~~~l~~~~~r~g----------i~-iea~  169 (527)
T KOG0505|consen  114 ASCGYLNIVEYLIQHGANLL-------------AVNSDGNMPYDLAEDEATLDVLETEMARQG----------ID-IEAA  169 (527)
T ss_pred             cccccHHHHHHHHHhhhhhh-------------hccCCCCCccccccCcchhHHHHHHHHHhc----------cc-HHHH
Confidence            77777777777777777654             456666666666554443333333222111          00 0000


Q ss_pred             HHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHH
Q 042906          164 IDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR  243 (415)
Q Consensus       164 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  243 (415)
                       +.                      ....+.|+-         +...+..+.. .+.....|.|.||.|+.+|..++.++
T Consensus       170 -R~----------------------~~e~~ml~D---------~~q~l~~G~~-~d~~~~rG~T~lHvAaa~Gy~e~~~l  216 (527)
T KOG0505|consen  170 -RK----------------------AEEQTMLDD---------ARQWLNAGAE-LDARHARGATALHVAAANGYTEVAAL  216 (527)
T ss_pred             -hh----------------------hhHHHHHHH---------HHHHHhcccc-ccccccccchHHHHHHhhhHHHHHHH
Confidence             00                      000011110         1111222211 33333335555555555555555555


Q ss_pred             HHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906          244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA  301 (415)
Q Consensus       244 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~  301 (415)
                      |++.|.+.. ..|.+|+||||.|+..+..++++.|++++++ ++.....|.+|+..|.
T Consensus       217 Ll~ag~~~~-~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~-~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  217 LLQAGYSVN-IKDYDGWTPLHAAAHWGQEDACELLVEHGAD-MDAKTKMGETPLDVAD  272 (527)
T ss_pred             HHHhccCcc-cccccCCCcccHHHHhhhHhHHHHHHHhhcc-cchhhhcCCCCccchh
Confidence            555555555 3555555555555555555555555555555 3555555555555444

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=6.1e-23  Score=160.28  Aligned_cols=132  Identities=20%  Similarity=0.284  Sum_probs=111.0

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHh------CCCccccccCCCCcHHHHHHhcCC----HHHHHHHhhCCCcccccc
Q 042906          254 KRDCNGETPLHLAAENGKLKVLKLLINK------YPDAIEIRDNSDRSILHVAAKHGN----WNIVSFILKSPEMENLIN  323 (415)
Q Consensus       254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------~~~~~~~~~~~g~t~l~~A~~~~~----~~~~~~Ll~~~~~~~~~~  323 (415)
                      .++..|.||||+|+..|+.++++.|+..      +++ ++.+|..|+||||+|+..++    .+++++|++.|++   ++
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad---in   91 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD---IN   91 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC---CC
Confidence            3567788888888888888888887543      345 68888899999999999888    5888999998877   88


Q ss_pred             cCCC-CCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042906          324 LVDR-NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR  398 (415)
Q Consensus       324 ~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~  398 (415)
                      .++. .|+||||+|+..++.+++++|+...|++++.+|.+|  +|||++|..       .+..+++++|++.+|..
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g--~tpL~~A~~-------~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADN--KSPFELAID-------NEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC--CCHHHHHHH-------CCCHHHHHHHHHHHHHh
Confidence            8885 899999999999999999999975689999999999  999999998       46778999999988874

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=3.3e-23  Score=176.57  Aligned_cols=204  Identities=23%  Similarity=0.351  Sum_probs=135.0

Q ss_pred             HHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHH
Q 042906          160 LSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK  239 (415)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  239 (415)
                      +.-|+..+..+-+..|+..+...  .....+|.|++|.++...+.++++++++.+.. ++..|..++||+|.|+..|+..
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~--~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASP--NLCNVDGLTALHQACIDDNLEMVKFLVENGAN-VNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCc--cccCCccchhHHHHHhcccHHHHHHHHHhcCC-ccccccccCCcchhhcccccHH
Confidence            33456666777777777666444  33336777777777777777777777777765 6777777777777777777777


Q ss_pred             HHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHH--------------------------hCCCccccccCCC
Q 042906          240 MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN--------------------------KYPDAIEIRDNSD  293 (415)
Q Consensus       240 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------------------~~~~~~~~~~~~g  293 (415)
                      ++++|+++|++.. ..+..|..|+..+...-..+++.....                          .|.. ..+.+..|
T Consensus       121 i~~~li~~gA~~~-avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~-~d~~~~rG  198 (527)
T KOG0505|consen  121 IVEYLIQHGANLL-AVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE-LDARHARG  198 (527)
T ss_pred             HHHHHHHhhhhhh-hccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc-cccccccc
Confidence            7777777777766 466677777776655443333322221                          2333 34555556


Q ss_pred             CcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHH
Q 042906          294 RSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAE  373 (415)
Q Consensus       294 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~  373 (415)
                      .|+||.|..+|..++.++|++.|..   ++.+|.+|+||||.|+.-|..++++.|+++ |++++.....|  .||+++|.
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~~---~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~-ga~~d~~t~~g--~~p~dv~d  272 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGYS---VNIKDYDGWTPLHAAAHWGQEDACELLVEH-GADMDAKTKMG--ETPLDVAD  272 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhccC---cccccccCCCcccHHHHhhhHhHHHHHHHh-hcccchhhhcC--CCCccchh
Confidence            7777777777777777777777666   667777777777777777777777766665 67777777777  77777776


Q ss_pred             H
Q 042906          374 I  374 (415)
Q Consensus       374 ~  374 (415)
                      +
T Consensus       273 e  273 (527)
T KOG0505|consen  273 E  273 (527)
T ss_pred             h
Confidence            6

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=9.7e-23  Score=165.06  Aligned_cols=172  Identities=26%  Similarity=0.370  Sum_probs=95.8

Q ss_pred             hhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCC
Q 042906          110 VLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLP  189 (415)
Q Consensus       110 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  189 (415)
                      .+...++.-|.+|+|+|||++.++++++|+.|++.|....+..++.|.||+++++-..-                     
T Consensus       256 lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~l---------------------  314 (452)
T KOG0514|consen  256 LLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKL---------------------  314 (452)
T ss_pred             HHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhh---------------------
Confidence            34556778899999999999999999999999999987777788888888877652210                     


Q ss_pred             cchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHc
Q 042906          190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN  269 (415)
Q Consensus       190 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  269 (415)
                               -...+.+++..|+..+..+. .....|+|+|++|+.+|..++++.|+..|++++ ..|.+|-|+|++|+++
T Consensus       315 ---------k~~~d~~vV~~LF~mgnVNa-KAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EH  383 (452)
T KOG0514|consen  315 ---------KQPADRTVVERLFKMGDVNA-KASQHGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEH  383 (452)
T ss_pred             ---------cchhhHHHHHHHHhccCcch-hhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhh
Confidence                     00113334444444443211 112334444444444444444444444444444 3444444444444444


Q ss_pred             CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHh
Q 042906          270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL  313 (415)
Q Consensus       270 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  313 (415)
                      |+.++++.||......+..+|.+|-|+|.+|...|+.+|.-+|.
T Consensus       384 GhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  384 GHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             ChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHH
Confidence            44444444444443334444444444444444444444444443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.6e-21  Score=160.47  Aligned_cols=157  Identities=17%  Similarity=0.143  Sum_probs=131.3

Q ss_pred             hcccccCCCC-HHHHHHhcCCHHHHHHHHHhchhhhhc---cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccc-cCC
Q 042906          218 IDRLDWHQRN-PLHYAAASGNVKMAQRLLEESKQLAYK---RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR-DNS  292 (415)
Q Consensus       218 ~~~~~~~~~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~  292 (415)
                      +..+|..+++ +|+.|++.++.+++++|+++|++++..   .+..|.||||+|+..++.+++++|+++|++ ++.. +..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~  103 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEA  103 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCC
Confidence            3445666655 567777889999999999999998742   146899999999999999999999999999 5875 567


Q ss_pred             CCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHH
Q 042906          293 DRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIA  372 (415)
Q Consensus       293 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a  372 (415)
                      |.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..++.+++..+.   |..   .+..+  .+|+.++
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAd---in~kd~~G~TpL~~A~~~~~~~~~~~~~---~~~---~~~~~--~~~~~~~  172 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGAD---INIQTNDMVTPIELALMICNNFLAFMIC---DNE---ISNFY--KHPKKIL  172 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHhCChhHHHHhc---CCc---ccccc--cChhhhh
Confidence            99999999999999999999999988   8999999999999999999988875554   332   46667  7888865


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHH
Q 042906          373 EITRADGKEIQKHLTLKALKTAYA  396 (415)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~L~~~Ga  396 (415)
                      .          ..+++++|+.+++
T Consensus       173 ~----------n~ei~~~Lish~v  186 (300)
T PHA02884        173 I----------NFDILKILVSHFI  186 (300)
T ss_pred             c----------cHHHHHHHHHHHH
Confidence            3          2469999999999

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.7e-22  Score=155.82  Aligned_cols=99  Identities=17%  Similarity=0.187  Sum_probs=58.3

Q ss_pred             cccCCCCcHHHHHHhcCCH---HHHHHHhhCCCcccccccCC-CCCCcHHHHHHhcCChHHHHHHhhccCcCcccccccc
Q 042906          288 IRDNSDRSILHVAAKHGNW---NIVSFILKSPEMENLINLVD-RNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA  363 (415)
Q Consensus       288 ~~~~~g~t~l~~A~~~~~~---~~~~~Ll~~~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g  363 (415)
                      .+|..|+||||+|+..++.   +++++|++.|++   ++.++ ..|+||||+|+..++.+++++|+++.|++++.+|..|
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad---in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g  126 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD---INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAF  126 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC---ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCC
Confidence            3455566666666665554   345566666555   55555 3566666666666666666666654456666666666


Q ss_pred             ccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042906          364 RNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR  398 (415)
Q Consensus       364 ~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~  398 (415)
                        .||||+|+.       .+..+++++|+.+||+.
T Consensus       127 --~tpL~~A~~-------~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        127 --KTPYYVACE-------RHDAKMMNILRAKGAQC  152 (154)
T ss_pred             --CCHHHHHHH-------cCCHHHHHHHHHcCCCC
Confidence              666666665       34555666666666554

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=2.6e-21  Score=151.07  Aligned_cols=134  Identities=20%  Similarity=0.280  Sum_probs=117.1

Q ss_pred             hcccccCCCCHHHHHHhcCCHHHHHHHHHh------chhhhhccCCCCCCHHHHHHHcCC----HHHHHHHHHhCCCccc
Q 042906          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEE------SKQLAYKRDCNGETPLHLAAENGK----LKVLKLLINKYPDAIE  287 (415)
Q Consensus       218 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~------~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~  287 (415)
                      ++..+..|.||||+|+..|+.++++.|+..      +++++ ..+..|.||||+|+..++    .+++++|++.|++ ++
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in-~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in   91 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN-ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-IN   91 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhh-ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CC
Confidence            445677899999999999999999998653      35555 678899999999999998    5899999999999 58


Q ss_pred             cccC-CCCcHHHHHHhcCCHHHHHHHhhC-CCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcc
Q 042906          288 IRDN-SDRSILHVAAKHGNWNIVSFILKS-PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR  357 (415)
Q Consensus       288 ~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~  357 (415)
                      .++. .|+||||+|+..++.+++++|++. |.+   ++.+|..|+||||+|+..++.+++++|++. ++...
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~---~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~-~~~~~  159 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID---LHFCNADNKSPFELAIDNEDVAMMQILREI-VATSR  159 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCCHHHHHHHCCCHHHHHHHHHH-HHHhc
Confidence            8885 899999999999999999999974 766   899999999999999999999999999975 55443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=2.7e-21  Score=140.11  Aligned_cols=142  Identities=32%  Similarity=0.368  Sum_probs=122.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH
Q 042906          228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN  307 (415)
Q Consensus       228 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  307 (415)
                      .+.+|+..+....|+.|++..++..+.+|.+|+||||-|+.+|+.+|++.|+..|++. +.+...|+||||.||.-++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            4567888888888888888888777788888999999999999999999999888884 888889999999999999999


Q ss_pred             HHHHHhhCCCcccccccCCCCCCcHHHHHHhcCCh-HHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          308 IVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHS-DVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       308 ~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      ++.+||++|++   +|+......||||+|+.+.+. ..+.+|+...++++-.++..+  .||+++|.+.
T Consensus       145 va~~LLqhgaD---VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~e--eta~~iARRT  208 (228)
T KOG0512|consen  145 VAGRLLQHGAD---VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLE--ETAFDIARRT  208 (228)
T ss_pred             HHHHHHhccCc---ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCcc--chHHHHHHHh
Confidence            99999999888   899998999999999987664 567888877889999999999  9999999983

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.2e-20  Score=157.42  Aligned_cols=155  Identities=18%  Similarity=0.169  Sum_probs=103.3

Q ss_pred             cCCCCCCC-HHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcC----CCCCCChHHHHHHhCcHHHHHHHHhhccccc
Q 042906           29 TSSPGGNT-VLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQK----NLMDETPLHIAARIGNRAIVSEIVKYVPAVN  103 (415)
Q Consensus        29 ~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  103 (415)
                      .+|..|+| +||.|+..|+.+++++|++.|         ++++.+    +..|.||||+|+..|+.+++++|+++|++++
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~G---------AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN   97 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLG---------ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN   97 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCC---------CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC
Confidence            34555544 466666667788888888874         444544    3467888888888888888888888888776


Q ss_pred             cCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCc
Q 042906          104 QAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESL  183 (415)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  183 (415)
                      ..            .+..|.||||+|+..++.+++++|++.|+++. ..+..|.||+++|+..++.+++..+......  
T Consensus        98 ~~------------~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~~--  162 (300)
T PHA02884         98 RY------------AEEAKITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALMICNNFLAFMICDNEIS--  162 (300)
T ss_pred             cc------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCChhHHHHhcCCccc--
Confidence            21            13467788888888888888888888887776 5677778888888777777766555432211  


Q ss_pred             cCCCCCcchhHHHHHHHcCCHHHHHHHHhcCh
Q 042906          184 NTTRLPDELTLLHFVVMRQNYDIMVKILGTNK  215 (415)
Q Consensus       184 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  215 (415)
                           ..+.+|.+..   ++.++++.|+.+..
T Consensus       163 -----~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        163 -----NFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             -----ccccChhhhh---ccHHHHHHHHHHHH
Confidence                 2333555543   35677777776654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=4.4e-21  Score=147.92  Aligned_cols=134  Identities=19%  Similarity=0.279  Sum_probs=111.0

Q ss_pred             hcccccCCCCHHHHHHhcCCHHHHHHHHHhchh------hhhccCCCCCCHHHHHHHcCCH---HHHHHHHHhCCCcccc
Q 042906          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQ------LAYKRDCNGETPLHLAAENGKL---KVLKLLINKYPDAIEI  288 (415)
Q Consensus       218 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~------~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~~~~~~~  288 (415)
                      .+..+..|.||||+|++.|+.  +..+...+..      .....+..|.||||+|+..++.   +++++|++.|++ ++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-ING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccc
Confidence            556678899999999999983  3333322221      1224688999999999999987   468999999998 688


Q ss_pred             cc-CCCCcHHHHHHhcCCHHHHHHHhhC-CCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccc
Q 042906          289 RD-NSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA  358 (415)
Q Consensus       289 ~~-~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~  358 (415)
                      ++ ..|+||||+|+..++.+++++|++. |.+   ++.+|..|+||||+|+..++.+++++|+++ |+++++
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d---~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~-ga~~~~  154 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVN---MEILNYAFKTPYYVACERHDAKMMNILRAK-GAQCKV  154 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---CccccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCC
Confidence            87 5899999999999999999999974 766   899999999999999999999999999985 888753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.1e-20  Score=137.00  Aligned_cols=143  Identities=22%  Similarity=0.227  Sum_probs=113.9

Q ss_pred             hHHHHHHHcCChhHHHHHHhhc-cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQ-NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      ..+..|+..+.+..|+.|++.. .-+|.+|.+|+||||-|++.|+.++++.|+..         +++.+.+...|+||||
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~---------gAn~~a~T~~GWTPLh  135 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS---------GANKEAKTNEGWTPLH  135 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc---------cCCcccccccCccchh
Confidence            3577888999999999998877 44788899999999999999999999999987         5667788888999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCC-HHHHHHHHhCCCCCcccccccCCcHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH-KRVIRILVEKDSVPSSYINKAYQTPL  160 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~~~l  160 (415)
                      -||...+.+++..|+++|++++             .......||||.|+.+.+ ...+.+|+....-.....+..+.||+
T Consensus       136 SAckWnN~~va~~LLqhgaDVn-------------A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~  202 (228)
T KOG0512|consen  136 SACKWNNFEVAGRLLQHGADVN-------------AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAF  202 (228)
T ss_pred             hhhcccchhHHHHHHhccCccc-------------ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHH
Confidence            9999999999999999999888             345567899999988765 44566666544433446677778888


Q ss_pred             HHHHHcC
Q 042906          161 SIAIDAR  167 (415)
Q Consensus       161 ~~a~~~~  167 (415)
                      .+|-+.+
T Consensus       203 ~iARRT~  209 (228)
T KOG0512|consen  203 DIARRTS  209 (228)
T ss_pred             HHHHHhh
Confidence            8876543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.81  E-value=1.3e-18  Score=156.38  Aligned_cols=216  Identities=20%  Similarity=0.219  Sum_probs=170.8

Q ss_pred             cHHHHHHHcCChhHHHHHhhhCC-------CCccCCCCCcchhHHHHHHHc---CCHHHHHHHHhcChhhhccc----cc
Q 042906          158 TPLSIAIDARLNDSACFIIDKSP-------ESLNTTRLPDELTLLHFVVMR---QNYDIMVKILGTNKELIDRL----DW  223 (415)
Q Consensus       158 ~~l~~a~~~~~~~~~~~ll~~~~-------~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~----~~  223 (415)
                      .++..+...+..+....++....       +.....+...|.|+||.|..+   ++.+++..|++..+..++..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            44555555555544444443331       223334457889999999873   44578888888887666543    45


Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHHhchhhhhc--------c--------------CCCCCCHHHHHHHcCCHHHHHHHHHh
Q 042906          224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYK--------R--------------DCNGETPLHLAAENGKLKVLKLLINK  281 (415)
Q Consensus       224 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~--------~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~~  281 (415)
                      .|.|+||.|+.+.+.++|++|++.|+|++..        .              -..|..||.+|+..++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            7899999999999999999999999987632        1              12478999999999999999999999


Q ss_pred             CCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc-c--------
Q 042906          282 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH-K--------  352 (415)
Q Consensus       282 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~--------  352 (415)
                      +++ ++.+|..|+|.||..+.+-..++..++++.|+. .....+|..|.|||.+|++-|+.++.+.+++. +        
T Consensus       263 gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGp  340 (782)
T KOG3676|consen  263 GAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGP  340 (782)
T ss_pred             CCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecc
Confidence            999 599999999999999999999999999999987 66789999999999999999999999999986 1        


Q ss_pred             ----CcCccccccccccchhHHHHHHh
Q 042906          353 ----SVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       353 ----g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                          .=+++..|+-|...|+|.+.+-.
T Consensus       341 vtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  341 VTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             cccccccchhcccccchhhhhhhhhcC
Confidence                12466666665558999998884

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=3.4e-20  Score=145.90  Aligned_cols=114  Identities=28%  Similarity=0.424  Sum_probs=103.6

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHH
Q 042906          254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPL  333 (415)
Q Consensus       254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l  333 (415)
                      .-|..|.+|||+|++.|+..+++.|+++|+. +|..+....||||+|+.+|+-++++.|++..++   +|.++..|+|||
T Consensus        29 ~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~kad---vnavnehgntpl  104 (448)
T KOG0195|consen   29 VGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD---VNAVNEHGNTPL  104 (448)
T ss_pred             cccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHHhcc---cchhhccCCCch
Confidence            6778899999999999999999999999998 698998889999999999999999999998777   999999999999


Q ss_pred             HHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          334 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       334 ~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      |||+.-|+..+++-|+.. |+-+++.|.+|  .|||+-|--
T Consensus       105 hyacfwgydqiaedli~~-ga~v~icnk~g--~tpldkakp  142 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISC-GAAVNICNKKG--MTPLDKAKP  142 (448)
T ss_pred             hhhhhhcHHHHHHHHHhc-cceeeecccCC--CCchhhhch
Confidence            999999999999999975 99999999999  999998877

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.80  E-value=8.4e-19  Score=157.51  Aligned_cols=206  Identities=16%  Similarity=0.154  Sum_probs=169.2

Q ss_pred             hHHHHHHHcCChhHHHHHHhhc---------cccccCCCCCCCHHHHHHHh---CCHHHHHHHHhccchHHHHHHhHhhh
Q 042906            3 QELLEVLRNGDENKIKQLALRQ---------NIFSTSSPGGNTVLHMAVRF---RNQQVIREILRQQNFIALRLHYSLLR   70 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~---------~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~   70 (415)
                      +.++.|...++++.+..++..+         -+++.+...|.|.||.|...   ++-++++.|++..+..    -.+...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~l----ind~~~  178 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKL----INDIYT  178 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHH----hhhhhh
Confidence            5678888899999998888877         56677778899999999974   4569999999985422    122223


Q ss_pred             cCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhh-----cc-----cCCCChHHHHHHHcCCHHHHHH
Q 042906           71 QKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFR-----MR-----DIEGNTPLHNAVTNQHKRVIRI  140 (415)
Q Consensus        71 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-----~~-----~~~g~t~l~~A~~~~~~~~v~~  140 (415)
                      .....|.||||+|+.+.+.++|++|++.|||++++..-..+...-.     ..     =..|..||.+|+..++.+++++
T Consensus       179 ~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  179 SEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             hHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            3456799999999999999999999999999996544333221111     11     2468899999999999999999


Q ss_pred             HHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhc
Q 042906          141 LVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGT  213 (415)
Q Consensus       141 Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  213 (415)
                      |+++|+++. ..|..|+|.||.++..-..++..++++.+........+..|.|||..|+.-|..++++.+++.
T Consensus       259 Ll~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  259 LLAHGADPN-AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHhcCCCCC-ccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999987 899999999999999999999999999998855556668999999999999999999999988

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=8.8e-19  Score=121.52  Aligned_cols=89  Identities=40%  Similarity=0.621  Sum_probs=75.4

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCCh
Q 042906          263 LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHS  342 (415)
Q Consensus       263 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~  342 (415)
                      ||+|++.++.+++++|++.+.+. +.    |+||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGAD---INSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTC---TT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhccc---ccccCCCCCCHHHHHHHcCCH
Confidence            68899999999999999987663 44    88899999999999999999999887   888889999999999999999


Q ss_pred             HHHHHHhhccCcCccccc
Q 042906          343 DVVFTLSRHKSVNIRAKN  360 (415)
Q Consensus       343 ~~~~~Ll~~~g~~~~~~d  360 (415)
                      +++++|+++ |++++.+|
T Consensus        73 ~~~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHHHHT-TT-TTSS-
T ss_pred             HHHHHHHHc-CCCCCCcC
Confidence            999999986 89998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=2.2e-18  Score=119.50  Aligned_cols=86  Identities=28%  Similarity=0.316  Sum_probs=79.4

Q ss_pred             HHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHH
Q 042906            5 LLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAA   84 (415)
Q Consensus         5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~   84 (415)
                      ||.|++.|+.++++.|++.+.+++.    |.||||+|+..|+.+++++|++.         +.+++.++..|+||||+|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~---------g~~~~~~~~~g~t~L~~A~   67 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLEN---------GADINSQDKNGNTALHYAA   67 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHT---------TTCTT-BSTTSSBHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHh---------cccccccCCCCCCHHHHHH
Confidence            7899999999999999999987776    88999999999999999999997         6778889999999999999


Q ss_pred             HhCcHHHHHHHHhhccccc
Q 042906           85 RIGNRAIVSEIVKYVPAVN  103 (415)
Q Consensus        85 ~~g~~~~v~~Ll~~~~~~~  103 (415)
                      .+|+.+++++|+++|++++
T Consensus        68 ~~~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   68 ENGNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             HTTHHHHHHHHHHTTT-TT
T ss_pred             HcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=4.1e-19  Score=139.84  Aligned_cols=145  Identities=23%  Similarity=0.362  Sum_probs=119.4

Q ss_pred             HHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Q 042906          208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE  287 (415)
Q Consensus       208 ~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  287 (415)
                      ..-++....+.+..|..|.+|||+|++.|+..+++.|+.+|+.++ ..+....||||+|+..|+.++|+.|++..++ +|
T Consensus        17 rlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn-~tnmgddtplhlaaahghrdivqkll~~kad-vn   94 (448)
T KOG0195|consen   17 RLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVN-STNMGDDTPLHLAAAHGHRDIVQKLLSRKAD-VN   94 (448)
T ss_pred             EEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccc-cccCCCCcchhhhhhcccHHHHHHHHHHhcc-cc
Confidence            333444445578888899999999999999999999999999988 5677778999999999999999999999999 69


Q ss_pred             cccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccc
Q 042906          288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA  358 (415)
Q Consensus       288 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~  358 (415)
                      ..+..|+|||||||.-|.-.+.+-|+..|+.   ++..++.|.|||..|--.-...+.+ +.+..|-++|.
T Consensus        95 avnehgntplhyacfwgydqiaedli~~ga~---v~icnk~g~tpldkakp~l~~~l~e-~aek~gq~~nr  161 (448)
T KOG0195|consen   95 AVNEHGNTPLHYACFWGYDQIAEDLISCGAA---VNICNKKGMTPLDKAKPMLKNTLLE-IAEKHGQSPNR  161 (448)
T ss_pred             hhhccCCCchhhhhhhcHHHHHHHHHhccce---eeecccCCCCchhhhchHHHHHHHH-HHHHhCCCCCc
Confidence            9999999999999999999999999999988   9999999999998875433322222 33333555553

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=4.4e-17  Score=121.76  Aligned_cols=124  Identities=43%  Similarity=0.679  Sum_probs=101.8

Q ss_pred             cccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 042906          221 LDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVA  300 (415)
Q Consensus       221 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A  300 (415)
                      .+..|.|||+.|+..++.+++++|++.+.... ..+..|.+|++.|+..++.+++++|++.++. ++..+..|.||+|+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~-~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHH
Confidence            34567888888888888888888888887754 5677888888888888888888888888876 477778888888888


Q ss_pred             HhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHh
Q 042906          301 AKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (415)
Q Consensus       301 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  349 (415)
                      +..++.+++++|++.+..   ++..+..|.||+++|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888888888888888755   6777788888888888888888888875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=4.1e-17  Score=121.96  Aligned_cols=124  Identities=41%  Similarity=0.609  Sum_probs=113.5

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHH
Q 042906          255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLH  334 (415)
Q Consensus       255 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~  334 (415)
                      .+..|.|||++|+..++.+++++|++.++.. +..+..|.+|+|+|+..++.+++++|++.+..   ++..+..|.||+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~l~   78 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD---VNARDKDGNTPLH   78 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHH
Confidence            4567999999999999999999999999884 88899999999999999999999999999875   7888899999999


Q ss_pred             HHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHH
Q 042906          335 LAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALK  392 (415)
Q Consensus       335 ~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~  392 (415)
                      +|+..++.+++++|+++ |.+++..+..|  .||+++|..       .....++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~-~~~~~~~~~~~--~~~l~~~~~-------~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKH-GADVNARDKDG--RTPLHLAAK-------NGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHc-CCCCcccCCCC--CCHHHHHHh-------cCCHHHHHHhC
Confidence            99999999999999986 89999999999  999999999       36677888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=4.2e-17  Score=105.11  Aligned_cols=92  Identities=21%  Similarity=0.243  Sum_probs=85.2

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      |..+.+++++|+++.|+..+..|.+++..- .|++|||||+-+|+.+++++|+..         +++++.+|.+|-|||.
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~i---------GA~i~~kDKygITPLL   72 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISI---------GANIQDKDKYGITPLL   72 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHh---------ccccCCccccCCcHHH
Confidence            457889999999999999999997777554 899999999999999999999998         6788999999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccc
Q 042906           82 IAARIGNRAIVSEIVKYVPAVN  103 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~  103 (415)
                      .|+..|+.++|++|+++|++-.
T Consensus        73 sAvwEGH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   73 SAVWEGHRDCVKLLLQNGADRT   94 (117)
T ss_pred             HHHHHhhHHHHHHHHHcCcccc
Confidence            9999999999999999999866

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.69  E-value=2.9e-16  Score=101.31  Aligned_cols=106  Identities=24%  Similarity=0.274  Sum_probs=89.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcC
Q 042906          261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL  340 (415)
Q Consensus       261 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~  340 (415)
                      ..+.+++++|.++-|+..+..|-+ ++..- .|++|||||+..|..++++||+..|+.   ++.+|+.|-|||.-|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~n-Vn~~~-ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLN-VNEIY-GGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcccc-HHHHh-CCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHHHHh
Confidence            456788899999999888888755 34433 789999999999999999999999888   8999999999999999999


Q ss_pred             ChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          341 HSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       341 ~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      |.+++++||++ |+|...+..+|  .|.++.+.+
T Consensus        79 H~~cVklLL~~-GAdrt~~~PdG--~~~~eate~  109 (117)
T KOG4214|consen   79 HRDCVKLLLQN-GADRTIHAPDG--TALIEATEE  109 (117)
T ss_pred             hHHHHHHHHHc-CcccceeCCCc--hhHHhhccH
Confidence            99999999986 99999999999  777766554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=4.2e-14  Score=117.93  Aligned_cols=130  Identities=35%  Similarity=0.464  Sum_probs=118.3

Q ss_pred             hcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCC-----HHHHHHHHHhCC--Ccccccc
Q 042906          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK-----LKVLKLLINKYP--DAIEIRD  290 (415)
Q Consensus       218 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~~~--~~~~~~~  290 (415)
                      ....+..+.++++.++..+....+.+++..+.+++ ..+..|.||||+|+..++     .++++.|++.++  +..+..|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcc-cccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            34455667899999999999999999999999995 789999999999999999     999999999999  5567779


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          291 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       291 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      ..|+||||+|+..++.+++++|++.|+.   ++.++..|.|+++.|+..++.++++.++..
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCC---CcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            9999999999999999999999999887   888899999999999999999999999975

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=4.3e-14  Score=117.87  Aligned_cols=131  Identities=32%  Similarity=0.414  Sum_probs=120.0

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC-----HHHHHHHhhCCCcccccccCCCC
Q 042906          254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-----WNIVSFILKSPEMENLINLVDRN  328 (415)
Q Consensus       254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~  328 (415)
                      ..+..+.++++.++..+..+++++++..+.+. +.++..|.||+|+|+..++     .+++++|++.|+.....+.+|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            35566889999999999999999999999995 9999999999999999999     99999999999821127777999


Q ss_pred             CCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906          329 GNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY  395 (415)
Q Consensus       329 g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G  395 (415)
                      |+||||+|+..|+.++++.|++. |++++..+..|  .|+++.|..       .++..+++.|+..|
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g--~t~l~~a~~-------~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEA-GADPNSRNSYG--VTALDPAAK-------NGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhc-CCCCcccccCC--Ccchhhhcc-------cchHHHHHHHHhcC
Confidence            99999999999999999999986 99999999999  999999999       68899999999976

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=5.8e-14  Score=110.95  Aligned_cols=121  Identities=20%  Similarity=0.211  Sum_probs=108.4

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      .++|++++..|+.+.+..|+..-.+++..|+.|.|+|.-|++.|+.++++.|++.|++++        ..++..+.||||
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN--------~~qhg~~YTpLm   84 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN--------DKQHGTLYTPLM   84 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC--------cccccccccHHH
Confidence            368999999999999999999988899999999999999999999999999999855432        245677899999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHh
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVE  143 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  143 (415)
                      +|+.+|+.++.+.|++.|+...             ..|.-|+|+-..|+.-|+.++|..+-.
T Consensus        85 FAALSGn~dvcrllldaGa~~~-------------~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGARMY-------------LVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHHcCCchHHHHHHhccCccc-------------cccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999999999766             568889999999999999999887643

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=7.5e-15  Score=90.59  Aligned_cols=56  Identities=36%  Similarity=0.429  Sum_probs=31.1

Q ss_pred             HhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHH
Q 042906          312 ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIA  372 (415)
Q Consensus       312 Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a  372 (415)
                      |++.|  +.+++.+|..|.||||+|+..|+.+++++|+. .|+|++.+|.+|  +||||+|
T Consensus         1 LL~~~--~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G--~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHG--PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDG--QTPLHYA   56 (56)
T ss_dssp             -------T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS----HHHH-
T ss_pred             CCccC--cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCC--CCHHHhC
Confidence            45665  23388999999999999999999999999995 599999999999  9999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=3.8e-14  Score=121.17  Aligned_cols=120  Identities=18%  Similarity=0.151  Sum_probs=105.9

Q ss_pred             HHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHH
Q 042906            4 ELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIA   83 (415)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A   83 (415)
                      .|+.|+..|.+++|+..+..-.+....+..|.|+||-|+-.||.++|++|++.         ++++|..|.+||||||+|
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~---------ganVNa~DSdGWTPLHCA  623 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEF---------GANVNAADSDGWTPLHCA  623 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhc---------CCcccCccCCCCchhhhh
Confidence            47889999999999999999999999999999999999999999999999997         788999999999999999


Q ss_pred             HHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHH--HcCCHHHHHHHHhC
Q 042906           84 ARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV--TNQHKRVIRILVEK  144 (415)
Q Consensus        84 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~--~~~~~~~v~~Ll~~  144 (415)
                      +.+++..+++.|++.|+-+..            ..-.++.|+..-+-  ..|..++.+||...
T Consensus       624 ASCNnv~~ckqLVe~GaavfA------------sTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  624 ASCNNVPMCKQLVESGAAVFA------------STLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hhcCchHHHHHHHhccceEEe------------eecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999999999997653            23446778776654  35788899998753

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.52  E-value=3.5e-14  Score=87.30  Aligned_cols=54  Identities=33%  Similarity=0.450  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHH
Q 042906           34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIV   96 (415)
Q Consensus        34 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll   96 (415)
                      |.||||+|++.|+.+++++|++.         +.+++.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~---------~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH---------GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT---------TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC---------CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999998         5678889999999999999999999999986

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=8.8e-14  Score=85.51  Aligned_cols=54  Identities=43%  Similarity=0.541  Sum_probs=31.2

Q ss_pred             CCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHh
Q 042906          293 DRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (415)
Q Consensus       293 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  349 (415)
                      |+||||+|+..|+.+++++|++.|.+   ++.+|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d---in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD---INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG---TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666666655   6666666666666666666666666664

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.48  E-value=2.3e-13  Score=128.57  Aligned_cols=105  Identities=28%  Similarity=0.344  Sum_probs=57.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCCh
Q 042906          263 LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHS  342 (415)
Q Consensus       263 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~  342 (415)
                      |+.|+..|+.+.++.|++.|++ ++.+|..|+||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..++.
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad---vn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD---PTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCcH
Confidence            4555555555555555555555 355555555555555555555555555555554   555555555555555555555


Q ss_pred             HHHHHHhhc------cCcCccccccccccchhHHHHH
Q 042906          343 DVVFTLSRH------KSVNIRAKNRSARNNIALEIAE  373 (415)
Q Consensus       343 ~~~~~Ll~~------~g~~~~~~d~~g~~~t~l~~a~  373 (415)
                      +++++|+++      .|++++..+..|  ++|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g--~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTG--KPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCC--CCccchhh
Confidence            555555543      245555555555  45444443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=5.4e-14  Score=86.75  Aligned_cols=56  Identities=32%  Similarity=0.522  Sum_probs=28.4

Q ss_pred             HHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHH
Q 042906          278 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA  336 (415)
Q Consensus       278 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A  336 (415)
                      |+++++..++.+|..|+||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d---~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD---PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC---CCCCcCCCCCHHHhC
Confidence            45666333678888888888888888888888888877777   788888888888876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.45  E-value=9.5e-13  Score=104.21  Aligned_cols=124  Identities=23%  Similarity=0.245  Sum_probs=112.7

Q ss_pred             cchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHc
Q 042906          190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN  269 (415)
Q Consensus       190 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  269 (415)
                      ....+|.-++..++.+....|+..-. .++..|.+|.++|..|+..|+.++++.|++.|++++...+..++||||+|+.+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr-~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVR-QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhh-hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            34578889999999999999988743 48889999999999999999999999999999999988899999999999999


Q ss_pred             CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhC
Q 042906          270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS  315 (415)
Q Consensus       270 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  315 (415)
                      |+.++.+.|++.|+.. ...|.-|+|+-..|+.-|+.++|..+-++
T Consensus        90 Gn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999994 89999999999999999999988877554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.45  E-value=3.3e-13  Score=127.59  Aligned_cols=86  Identities=24%  Similarity=0.223  Sum_probs=82.6

Q ss_pred             HHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHH
Q 042906            4 ELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIA   83 (415)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A   83 (415)
                      .|+.|+..|+.+.++.|++.|++++..|..|.||||+|+..|+.+++++|++.         +++++.+|..|.||||+|
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~---------Gadvn~~d~~G~TpLh~A  155 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEF---------GADPTLLDKDGKTPLELA  155 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHC---------CCCCCCCCCCCCCHHHHH
Confidence            58899999999999999999999999999999999999999999999999998         577788999999999999


Q ss_pred             HHhCcHHHHHHHHhh
Q 042906           84 ARIGNRAIVSEIVKY   98 (415)
Q Consensus        84 ~~~g~~~~v~~Ll~~   98 (415)
                      +..|+.+++++|+++
T Consensus       156 ~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        156 EENGFREVVQLLSRH  170 (664)
T ss_pred             HHCCcHHHHHHHHhC
Confidence            999999999999998

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=1.1e-12  Score=112.41  Aligned_cols=118  Identities=24%  Similarity=0.242  Sum_probs=99.2

Q ss_pred             HHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChH
Q 042906          264 HLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSD  343 (415)
Q Consensus       264 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  343 (415)
                      .-|+..|.+++|+..+..-.++ ...|..|.|+||-|+..|+++||+||++.|+.   +|..|.+||||||+|+.+++..
T Consensus       555 LDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan---VNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN---VNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc---ccCccCCCCchhhhhhhcCchH
Confidence            3477889999999999887774 88899999999999999999999999999988   9999999999999999999999


Q ss_pred             HHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHH
Q 042906          344 VVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALK  392 (415)
Q Consensus       344 ~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~  392 (415)
                      +++.|++++++=.-.+-+|+  .||.+=+.+.     +.+-..-.+||.
T Consensus       631 ~ckqLVe~GaavfAsTlSDm--eTa~eKCee~-----eeGY~~CsqyL~  672 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDM--ETAAEKCEEM-----EEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHhccceEEeeecccc--cchhhhcchh-----hhhHHHHHHHHH
Confidence            99999998544455566788  9998888773     223334555554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.25  E-value=3.9e-11  Score=104.04  Aligned_cols=123  Identities=24%  Similarity=0.317  Sum_probs=113.2

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      .+.|+.|+..+|+-.++..-..|.++-.++.+..|.||+|+..|+-++|+|++++++       ...++..+..|+|+||
T Consensus       867 seeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p-------~elld~~de~get~lh  939 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP-------SELLDMADETGETALH  939 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCC-------HHHHHHHhhhhhHHHH
Confidence            567899999999999999999999999999999999999999999999999999974       5678888999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhC
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK  144 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  144 (415)
                      -|+..++..+..+|++.|+.+.             ..|..|.||-..|-+.|+.+++-||-..
T Consensus       940 kaa~~~~r~vc~~lvdagasl~-------------ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  940 KAACQRNRAVCQLLVDAGASLR-------------KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHhcchHHHHHHHhcchhhe-------------ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999766             5799999999999999999999998654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.07  E-value=1.2e-10  Score=98.76  Aligned_cols=88  Identities=20%  Similarity=0.249  Sum_probs=84.3

Q ss_pred             HHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHH
Q 042906            4 ELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIA   83 (415)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A   83 (415)
                      .++.|++.||+..++.+.-+|.+++..|.+.+|+||.|+..|+++++|+|++.        ++.+.+.+|..|+|||.-|
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~--------~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNA--------CKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHH--------HcCCCChhhccCCCcchHh
Confidence            47899999999999999999999999999999999999999999999999999        7899999999999999999


Q ss_pred             HHhCcHHHHHHHHhhc
Q 042906           84 ARIGNRAIVSEIVKYV   99 (415)
Q Consensus        84 ~~~g~~~~v~~Ll~~~   99 (415)
                      ...++.+++++|-+.-
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            9999999999998854

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.94  E-value=5.3e-10  Score=101.52  Aligned_cols=94  Identities=27%  Similarity=0.374  Sum_probs=61.4

Q ss_pred             HHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHHhcCCHHHHHHHhhCCCcc
Q 042906          241 AQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVAAKHGNWNIVSFILKSPEME  319 (415)
Q Consensus       241 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  319 (415)
                      .-++-..+....+..|..|+++||+|+..+..++++||+++|.+ +..+| ..|+||||.|+.+|+.+++-.||++|.. 
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-  111 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-  111 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCc-
Confidence            33444444444455666777777777777777777777777766 35554 3467777777777777777777777655 


Q ss_pred             cccccCCCCCCcHHHHHHh
Q 042906          320 NLINLVDRNGNTPLHLAAM  338 (415)
Q Consensus       320 ~~~~~~~~~g~t~l~~A~~  338 (415)
                        +..+|+.|..||++..+
T Consensus       112 --L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 --LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             --eEEecccCCCHHHHHhh
Confidence              66677777777766554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.94  E-value=1.1e-09  Score=57.15  Aligned_cols=29  Identities=41%  Similarity=0.504  Sum_probs=27.3

Q ss_pred             CCCChHHHHHHhCcHHHHHHHHhhccccc
Q 042906           75 MDETPLHIAARIGNRAIVSEIVKYVPAVN  103 (415)
Q Consensus        75 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  103 (415)
                      +|+||||+||.+|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48999999999999999999999999875

>PF13606 Ank_3: Ankyrin repeat

Probab=98.91  E-value=1.7e-09  Score=56.42  Aligned_cols=30  Identities=47%  Similarity=0.644  Sum_probs=22.4

Q ss_pred             CCCcHHHHHHhcCChHHHHHHhhccCcCccc
Q 042906          328 NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA  358 (415)
Q Consensus       328 ~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~  358 (415)
                      +|+||||+|+..|+.+++++|+++ |+|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~-gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH-GADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCCCCC
Confidence            467788888888888888888775 777763

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.89  E-value=4.7e-09  Score=89.85  Aligned_cols=93  Identities=17%  Similarity=0.153  Sum_probs=84.7

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCC-CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSP-GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPL   80 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L   80 (415)
                      +.+||..++.|++++.-.||..|++.|..++ .|.||||.|++.|+.--+++|+-+         |++++..|..|.||+
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY---------GAD~~a~d~~GmtP~  204 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY---------GADPGAQDSSGMTPV  204 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhc---------cCCCCCCCCCCCcHH
Confidence            4689999999999999999999999998887 699999999999999999999987         788899999999999


Q ss_pred             HHHHHhCcHHHHHHHHhhccccc
Q 042906           81 HIAARIGNRAIVSEIVKYVPAVN  103 (415)
Q Consensus        81 ~~A~~~g~~~~v~~Ll~~~~~~~  103 (415)
                      .+|-..|+-++.+.|++.--++.
T Consensus       205 ~~AR~~gH~~laeRl~e~~y~vt  227 (669)
T KOG0818|consen  205 DYARQGGHHELAERLVEIQYELT  227 (669)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHH
Confidence            99999999999998888655443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.85  E-value=3.5e-09  Score=57.15  Aligned_cols=33  Identities=45%  Similarity=0.700  Sum_probs=26.4

Q ss_pred             CCCcHHHHHHhcCChHHHHHHhhccCcCcccccc
Q 042906          328 NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  361 (415)
Q Consensus       328 ~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~  361 (415)
                      +|+||||+|+..|+.+++++|+++ |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCCCCCCC
Confidence            478888888888888888888875 888887763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.84  E-value=3.4e-09  Score=96.46  Aligned_cols=95  Identities=22%  Similarity=0.247  Sum_probs=73.1

Q ss_pred             HHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Q 042906          207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI  286 (415)
Q Consensus       207 ~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  286 (415)
                      --++...+....+.+|..|+++||.++..+..++++||+++|.++..+....|.||||-|+.+|+++++-.||++|.+ +
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L  112 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-L  112 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-e
Confidence            344444555557777888888888888888888888888888887755556788888888888888888888888877 5


Q ss_pred             ccccCCCCcHHHHHHh
Q 042906          287 EIRDNSDRSILHVAAK  302 (415)
Q Consensus       287 ~~~~~~g~t~l~~A~~  302 (415)
                      .+.|++|..||..-++
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            8888888888876665

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.82  E-value=9.7e-09  Score=89.66  Aligned_cols=93  Identities=18%  Similarity=0.190  Sum_probs=81.5

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhcccc----ccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCC
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIF----STSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDE   77 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~   77 (415)
                      .++|+.|+...|+..+-.|+.+|...    ...+.+|.|+||+||+.|++.+.++|+=         ++.++..+|..|+
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW---------yg~dv~~rda~g~  695 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW---------YGVDVMARDAHGR  695 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH---------hCccceecccCCc
Confidence            36899999999999999999999332    2333578999999999999999999994         4888999999999


Q ss_pred             ChHHHHHHhCcHHHHHHHHhhccccc
Q 042906           78 TPLHIAARIGNRAIVSEIVKYVPAVN  103 (415)
Q Consensus        78 t~L~~A~~~g~~~~v~~Ll~~~~~~~  103 (415)
                      |+|.||-+.|..+++..|+++|+...
T Consensus       696 t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  696 TALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            99999999999999999999998543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=2.1e-08  Score=87.54  Aligned_cols=117  Identities=21%  Similarity=0.277  Sum_probs=74.6

Q ss_pred             HHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-cccccCCCCcHHHHHHhcCCHHH
Q 042906          230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-IEIRDNSDRSILHVAAKHGNWNI  308 (415)
Q Consensus       230 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~A~~~~~~~~  308 (415)
                      ..|+..+++--++.....|.+.. .++.+..+.||+|++.|+-++|+++|++++.. ++..+..|.|+||-|+..++-.+
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll-~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLL-IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceE-eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            33444444444444444455544 35556667777777777777777777776542 45566667777777777777777


Q ss_pred             HHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906          309 VSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (415)
Q Consensus       309 ~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  350 (415)
                      .++|.+.|+.   +...|..|.||-.-|-+.|..++..||-+
T Consensus       950 c~~lvdagas---l~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVDAGAS---LRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHhcchh---heecccCCCChHHHHHhcCCchHHHHHhh
Confidence            7777777666   66667777777777777777777766654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.77  E-value=6.7e-09  Score=88.50  Aligned_cols=95  Identities=24%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             cCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhH
Q 042906          290 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIAL  369 (415)
Q Consensus       290 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l  369 (415)
                      +..+...+++|++.|++..++-+.-.|.+   ++.+|.+.+|+||.|+-.|+.+++++|++-.+++++.+|.-|  +|||
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D---~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~--rtPl  577 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD---LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWG--RTPL  577 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc---ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccC--CCcc
Confidence            34456788999999999999988888877   999999999999999999999999999999999999999999  9999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 042906          370 EIAEITRADGKEIQKHLTLKALKTAYA  396 (415)
Q Consensus       370 ~~a~~~~~~~~~~~~~~~~~~L~~~Ga  396 (415)
                      +=|..       +.+.+++++|-++-.
T Consensus       578 DdA~~-------F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  578 DDAKH-------FKHKEVVKLLEEAQY  597 (622)
T ss_pred             hHhHh-------cCcHHHHHHHHHHhc
Confidence            99999       789999999988754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.70  E-value=8.6e-08  Score=82.35  Aligned_cols=85  Identities=27%  Similarity=0.386  Sum_probs=53.3

Q ss_pred             HHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHH
Q 042906          229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI  308 (415)
Q Consensus       229 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  308 (415)
                      ||..++.|+.+..-.|+..|++.+..-...|.||||+|++.|+.--+++|+-.|++ +...|.+|.||+.+|-..|+-++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHhcCchHH
Confidence            56666666666666666666666654455566666666666666666666666666 36666666666666666666666


Q ss_pred             HHHHhh
Q 042906          309 VSFILK  314 (415)
Q Consensus       309 ~~~Ll~  314 (415)
                      .+-|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            655554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.61  E-value=2.1e-07  Score=85.82  Aligned_cols=129  Identities=16%  Similarity=0.142  Sum_probs=102.2

Q ss_pred             hHHHHHHHcCChhHHHHHHhhc----cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCC
Q 042906            3 QELLEVLRNGDENKIKQLALRQ----NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDET   78 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t   78 (415)
                      .....|+..||...|++.++..    .++|..|.-|+++|+.|+...+.+++++|++..         ..       -..
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~---------~~-------~gd   90 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTS---------SE-------EGD   90 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCc---------cc-------cch
Confidence            4678899999999999999976    457888999999999999999999999999972         11       146


Q ss_pred             hHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc
Q 042906           79 PLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS  150 (415)
Q Consensus        79 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  150 (415)
                      +|.+|+..|..+.|+.++.+-......+..   ...-...-..+-||+.+|+..+++|+++.|+++|+....
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~---~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLERS---GDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhccc---cccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            799999999999999999986654322210   000001223567999999999999999999999987653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.60  E-value=8.9e-08  Score=51.59  Aligned_cols=26  Identities=35%  Similarity=0.447  Sum_probs=14.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHhhCCCc
Q 042906          293 DRSILHVAAKHGNWNIVSFILKSPEM  318 (415)
Q Consensus       293 g~t~l~~A~~~~~~~~~~~Ll~~~~~  318 (415)
                      |+||||+|+.+++.+++++|+++|++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.58  E-value=2e-07  Score=81.09  Aligned_cols=62  Identities=24%  Similarity=0.408  Sum_probs=30.4

Q ss_pred             cccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906          286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (415)
Q Consensus       286 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  350 (415)
                      ++.+|..|+||||+|+..|+.+.++.|+..|++   +..+|..|++|||-|+..|+..++..++.
T Consensus        48 id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---v~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   48 IDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---VSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             eccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---ccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            344444445555555555555555555554444   44444555555555555555444444443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=3.5e-07  Score=79.68  Aligned_cols=91  Identities=23%  Similarity=0.376  Sum_probs=79.1

Q ss_pred             CHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhh
Q 042906           36 TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLF  115 (415)
Q Consensus        36 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  115 (415)
                      .|||+++...+.+-+...+...       -...++.+|..|+||||.|+.-|+.+.++.|+..|+++.            
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~-------~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~------------   82 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK-------VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS------------   82 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh-------hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc------------
Confidence            4599999999888777766552       245788999999999999999999999999999999877            


Q ss_pred             hcccCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 042906          116 RMRDIEGNTPLHNAVTNQHKRVIRILVEKDS  146 (415)
Q Consensus       116 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  146 (415)
                       .+|..|.+|||.|+..|+.+++..++.+..
T Consensus        83 -~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   83 -IKNNEGWSPLHEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             -ccccccccHHHHHHHcCCHHHHHHHHHHhH
Confidence             679999999999999999999988887653

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.47  E-value=6.5e-07  Score=74.53  Aligned_cols=71  Identities=17%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             HHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHH
Q 042906            4 ELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIA   83 (415)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A   83 (415)
                      .|++|++.||++.|++|++.|.++|.+|.-..+||.+|+..||.+++|+|+++|         +.-.....+|..++.-|
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenG---------AiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENG---------AICSRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcC---------CcccccccCcchhhhhh
Confidence            589999999999999999999999999999999999999999999999999985         44444455666654433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.44  E-value=4e-07  Score=79.90  Aligned_cols=92  Identities=20%  Similarity=0.127  Sum_probs=76.4

Q ss_pred             HHHHHHhcCCHHHHHHHhhCCCccccccc-CCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          296 ILHVAAKHGNWNIVSFILKSPEMENLINL-VDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       296 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      -|..|+...++..+-+||-+|......+. -+.+|.|+||+|+..|+..+.++|+-+ |+|+-++|..|  .|||.||.+
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g--~t~l~yar~  703 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHG--RTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCC--chhhhhHhh
Confidence            35577778888888999999876443333 345779999999999999999999965 99999999999  999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHH
Q 042906          375 TRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                             -+-.+.+.+|+++|-.
T Consensus       704 -------a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  704 -------AGSQECIDVLLQYGCP  719 (749)
T ss_pred             -------cccHHHHHHHHHcCCC
Confidence                   4677899999999865

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.39  E-value=5.9e-06  Score=76.62  Aligned_cols=129  Identities=12%  Similarity=0.063  Sum_probs=103.1

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhh
Q 042906           34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLES  113 (415)
Q Consensus        34 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  113 (415)
                      +.--...|+..|+.-.|+..++....     ..-++|..|.-|+++|+.|+.+.+.+++++|+++...            
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~-----~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~------------   87 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAV-----SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE------------   87 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccc-----cccchhccChHhhhceecccccccHHHHHHHhcCccc------------
Confidence            44457789999999999999998543     2357889999999999999999999999999986542            


Q ss_pred             hhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCc---------ccccccCCcHHHHHHHcCChhHHHHHhhhCCCCcc
Q 042906          114 LFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS---------SYINKAYQTPLSIAIDARLNDSACFIIDKSPESLN  184 (415)
Q Consensus       114 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~---------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  184 (415)
                              -..+|.+|+..+..++|+.++.+.....         ...-..+.||+.+|+..++.++++.|+.++.....
T Consensus        88 --------~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   88 --------EGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             --------cchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence                    2468999999999999999998754331         12233456999999999999999999988877666


Q ss_pred             CCC
Q 042906          185 TTR  187 (415)
Q Consensus       185 ~~~  187 (415)
                      +..
T Consensus       160 PH~  162 (822)
T KOG3609|consen  160 PHD  162 (822)
T ss_pred             Ccc
Confidence            543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.33  E-value=1.3e-06  Score=65.57  Aligned_cols=69  Identities=19%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             HhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhc-cccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCC
Q 042906           67 SLLRQKNLMDETPLHIAARIGNRAIVSEIVKYV-PAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD  145 (415)
Q Consensus        67 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  145 (415)
                      .++|.+|.+|+|++++|+..|+.+.+.||+.+| +.+.             ..|..|.+++.+|-+.|..++++.|.+..
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg-------------v~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG-------------VTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccccc-------------ccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            457889999999999999999999999999999 5443             67889999999999999999999998875


Q ss_pred             CCC
Q 042906          146 SVP  148 (415)
Q Consensus       146 ~~~  148 (415)
                      .+-
T Consensus        70 ~et   72 (223)
T KOG2384|consen   70 RET   72 (223)
T ss_pred             ccC
Confidence            443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.28  E-value=1.5e-06  Score=65.31  Aligned_cols=63  Identities=25%  Similarity=0.315  Sum_probs=50.1

Q ss_pred             cccccCCCCcHHHHHHhcCCHHHHHHHhhCC-CcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSP-EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       286 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      ++.+|..|+|+++.|+..|+.+.+.||+..| +.   +.+.|..|.+++.+|-+.|..++++.|.++
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~---vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF---VGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCccc---ccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            5778888888888888888888888888887 33   777788888888888888888888888776

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.15  E-value=1.3e-05  Score=67.05  Aligned_cols=56  Identities=21%  Similarity=0.324  Sum_probs=39.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCc
Q 042906          262 PLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM  318 (415)
Q Consensus       262 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  318 (415)
                      -|..||+.|..+.|++|++.|.. +|.+|....+||.+|+..||.+++++|+++|+.
T Consensus        39 elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            35667777777777777776666 577777777777777777777777777777663

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.12  E-value=2.5e-06  Score=81.15  Aligned_cols=79  Identities=28%  Similarity=0.399  Sum_probs=74.4

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHH
Q 042906          291 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALE  370 (415)
Q Consensus       291 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~  370 (415)
                      ..|.++||.|+..+..-..++|+++|++   +|.+|..|+||+|.+...|+......|+++ |+++++.+.+|  ++|++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~---vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~~~--~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD---VNALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDPDG--KLPLD  727 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc---chhhhccCCCcchhhhhhcccchhhhhccc-cccccccCccC--cchhh
Confidence            4578999999999999999999999988   999999999999999999999999999985 99999999999  99999


Q ss_pred             HHHHh
Q 042906          371 IAEIT  375 (415)
Q Consensus       371 ~a~~~  375 (415)
                      +|.+.
T Consensus       728 ~a~~~  732 (785)
T KOG0521|consen  728 IAMEA  732 (785)
T ss_pred             HHhhh
Confidence            99884

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.08  E-value=4.5e-06  Score=79.48  Aligned_cols=89  Identities=30%  Similarity=0.477  Sum_probs=81.1

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHH
Q 042906          257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA  336 (415)
Q Consensus       257 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A  336 (415)
                      ..|.|+||.|+..+..-++++|++.|++ ++..|..|++|+|.+...|+...+..|+++|++   .+..+..|++|+.+|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~---~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGAD---PNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccc---ccccCccCcchhhHH
Confidence            4578999999999999999999999999 799999999999999999999999999999988   899999999999999


Q ss_pred             HhcCChHHHHHHh
Q 042906          337 AMGLHSDVVFTLS  349 (415)
Q Consensus       337 ~~~~~~~~~~~Ll  349 (415)
                      ....+.+++-++.
T Consensus       730 ~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  730 MEAANADIVLLLR  742 (785)
T ss_pred             hhhccccHHHHHh
Confidence            8886666655443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.96  E-value=6e-06  Score=78.31  Aligned_cols=124  Identities=18%  Similarity=0.061  Sum_probs=66.2

Q ss_pred             HHHHHHcCChhHHHHHHhh-ccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHH
Q 042906            5 LLEVLRNGDENKIKQLALR-QNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIA   83 (415)
Q Consensus         5 L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A   83 (415)
                      +|.++..+..-++.++++- +......+.+|.-.+|+ |..++.+..-+++..        .+..++.+|..|+||||+|
T Consensus       578 lhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~--------~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  578 LHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISA--------DGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             HHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEee--------cccccccccCCCCcccchH
Confidence            4455555555555555553 44444444455555555 334444444444444        3555666666666666666


Q ss_pred             HHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhC
Q 042906           84 ARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK  144 (415)
Q Consensus        84 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  144 (415)
                      +..|+..++..|++.|++....       .........|.|+-..|-.+|+..+.-+|-+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~-------tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAV-------TDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccc-------cCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            6666666666666666543310       00112334466666666666666665555443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.91  E-value=1.1e-05  Score=76.72  Aligned_cols=128  Identities=21%  Similarity=0.163  Sum_probs=86.7

Q ss_pred             cccCCCCHHHHHHhcCCHHHHHHHHHh-chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 042906          221 LDWHQRNPLHYAAASGNVKMAQRLLEE-SKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHV  299 (415)
Q Consensus       221 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  299 (415)
                      ....|++.+|+++..+..-+++.+++- +.... ..+.+|.-.+|+ |..+.++..-+++.-....++++|..|+||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~-eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDL-ELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCch-hhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            344577888888888888888888774 32222 345566666777 444444555444433333368888888888888


Q ss_pred             HHhcCCHHHHHHHhhCCCccc---ccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906          300 AAKHGNWNIVSFILKSPEMEN---LINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (415)
Q Consensus       300 A~~~~~~~~~~~Ll~~~~~~~---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  350 (415)
                      |..+|+..++..|++.|+++.   ++...+..|.|+-..|..+|+..+.-+|-+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            888888888888888776643   233344568888888888888777666643

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.11  E-value=0.00051  Score=60.06  Aligned_cols=67  Identities=13%  Similarity=0.019  Sum_probs=47.9

Q ss_pred             CHHHHHHHhhCCCccc---ccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          305 NWNIVSFILKSPEMEN---LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       305 ~~~~~~~Ll~~~~~~~---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      -...+++|.+++.+.+   .+...+..--|+||||+..|...++.+||++ |+|+..+|..|  .||.+++..
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~G--rtpy~ls~n  472 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAG--RTPYSLSAN  472 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCC--CCccccccc
Confidence            3566777777765521   1223344456888888888888888888876 78888888888  888888775

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.07  E-value=0.0092  Score=45.45  Aligned_cols=140  Identities=16%  Similarity=0.080  Sum_probs=89.6

Q ss_pred             CHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH
Q 042906          227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW  306 (415)
Q Consensus       227 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  306 (415)
                      ..+..|++++.+.+++..-+.....    -...++.+..||+..+.++|+|+-+.-      .-.+-.+.+.+|+.++++
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL------~i~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNL------HIYNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhcc------CCCCchhhhhhhhhccch
Confidence            4577888888888888776654321    124566788899999999999985432      222344677888888887


Q ss_pred             HHHH----HHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHH
Q 042906          307 NIVS----FILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEI  382 (415)
Q Consensus       307 ~~~~----~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~  382 (415)
                      ++..    +++++.......+ .+.--..-|..|+..|....+...+++ |-+++        .++|-.|++       +
T Consensus       118 sLyslGY~l~~~~~~~~~~~d-~~~ll~~hl~~a~~kgll~F~letlky-gg~~~--------~~vls~Av~-------y  180 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSEHNED-PTSLLTQHLEKAAAKGLLPFVLETLKY-GGNVD--------IIVLSQAVK-------Y  180 (192)
T ss_pred             hHHHHHHHHHHhhcccccccC-HHHHHHHHHHHHHHCCCHHHHHHHHHc-CCccc--------HHHHHHHHH-------h
Confidence            7643    3333321100000 000001246778888999988888887 44444        578888998       6


Q ss_pred             HHHHHHHHHHH
Q 042906          383 QKHLTLKALKT  393 (415)
Q Consensus       383 ~~~~~~~~L~~  393 (415)
                      ++..|+.+++.
T Consensus       181 nhRkIL~yfi~  191 (192)
T PF03158_consen  181 NHRKILDYFIR  191 (192)
T ss_pred             hHHHHHHHhhc
Confidence            88888888763

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=97.06  E-value=0.00093  Score=34.13  Aligned_cols=28  Identities=32%  Similarity=0.449  Sum_probs=25.0

Q ss_pred             CCCChHHHHHHhCcHHHHHHHHhhcccc
Q 042906           75 MDETPLHIAARIGNRAIVSEIVKYVPAV  102 (415)
Q Consensus        75 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  102 (415)
                      .|.||+|+|+..++.++++.|++++.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3789999999999999999999988754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.02  E-value=0.013  Score=44.73  Aligned_cols=73  Identities=11%  Similarity=0.060  Sum_probs=50.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcC
Q 042906          123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQ  202 (415)
Q Consensus       123 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~  202 (415)
                      ...+..|++.+...+++..-+...+.    -...++.+..||+..+.++++|+-+.-..       ..-.+.+..|...+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i-------~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI-------YNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC-------CCchhhhhhhhhcc
Confidence            34577889999999988876654321    23456778889999999999998543322       23335677777777


Q ss_pred             CHHH
Q 042906          203 NYDI  206 (415)
Q Consensus       203 ~~~~  206 (415)
                      ++++
T Consensus       116 DlsL  119 (192)
T PF03158_consen  116 DLSL  119 (192)
T ss_pred             chhH
Confidence            7765

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=96.89  E-value=0.0017  Score=33.05  Aligned_cols=27  Identities=44%  Similarity=0.528  Sum_probs=16.1

Q ss_pred             CCcHHHHHHhcCChHHHHHHhhccCcCc
Q 042906          329 GNTPLHLAAMGLHSDVVFTLSRHKSVNI  356 (415)
Q Consensus       329 g~t~l~~A~~~~~~~~~~~Ll~~~g~~~  356 (415)
                      |.||+|+|+..++.+++++|+++ |.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~-~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK-GADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence            45666666666666666666654 4443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.74  E-value=0.013  Score=46.18  Aligned_cols=47  Identities=23%  Similarity=0.340  Sum_probs=30.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Q 042906          228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY  282 (415)
Q Consensus       228 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  282 (415)
                      .|--|+...+.+.+.-++....+        ..+++.+|+..+..+++-+|+++.
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f  202 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKF  202 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhc
Confidence            45566666666666665543322        235777888888888888888764

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.05  E-value=0.092  Score=41.53  Aligned_cols=117  Identities=19%  Similarity=0.209  Sum_probs=63.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhh--hccCCCCCCHHHHHHH--
Q 042906          193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA--YKRDCNGETPLHLAAE--  268 (415)
Q Consensus       193 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~--~~~~~~g~t~L~~A~~--  268 (415)
                      -.|.-|+...+++.+.-++....+        -.+++.+++.++..+++.+|+..-.-..  ...-..+..-+.++..  
T Consensus       155 isledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h  226 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEH  226 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhc
Confidence            456677777777777777755443        2367888888888888888887532110  0011111112222222  


Q ss_pred             cCCHHHHHHHHHhCCCcccc---ccCCCCcHHHHHHhcCCHHHHHHHhhCCC
Q 042906          269 NGKLKVLKLLINKYPDAIEI---RDNSDRSILHVAAKHGNWNIVSFILKSPE  317 (415)
Q Consensus       269 ~~~~~~v~~Ll~~~~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  317 (415)
                      ..+..++++++++|-..+|.   +-.+|.|.|.-|+++++.+++.+|+++|+
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            23455555555555433332   22345555555555555555555555554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.89  E-value=0.012  Score=51.97  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=54.6

Q ss_pred             cHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHH
Q 042906           88 NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI  164 (415)
Q Consensus        88 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~  164 (415)
                      -...+++|.+++.+.+..-       .-...+....|+||+|+..|..++|.+||+.|.++. ..+..|.||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~-------~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~-~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDV-------TPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS-TKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccc-------cccccccccchHHHHHHhcchHHHHHHHHHhcCCch-hcccCCCCcccccc
Confidence            3677889999888776321       122345557899999999999999999999997775 78999999998775

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.53  E-value=0.052  Score=35.62  Aligned_cols=48  Identities=21%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             CCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhh
Q 042906           35 NTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKY   98 (415)
Q Consensus        35 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~   98 (415)
                      ...+.+|+..|+.|+++.+++.+                ......+..|+...+.++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~----------------~~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN----------------KPDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh----------------ccHHHHHHHHHHHhhHHHHHHHHHh
Confidence            45789999999999999999762                1114679999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.05  E-value=0.05  Score=35.73  Aligned_cols=49  Identities=22%  Similarity=0.230  Sum_probs=40.4

Q ss_pred             CChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCC
Q 042906           77 ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD  145 (415)
Q Consensus        77 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  145 (415)
                      ...+..|+..|+.|+++.+++.+.                    .....+..|+...+.+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~--------------------~~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK--------------------PDNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc--------------------cHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            456899999999999999997542                    1256799999999999999999864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=90.53  E-value=11  Score=32.93  Aligned_cols=93  Identities=6%  Similarity=0.042  Sum_probs=52.2

Q ss_pred             cccCCCCHHHHHHhcCCHHHHHHHHHhch--hhhhccCCCCCCHHHHHHHcCCH----HHHHHHHHhCC----Ccccccc
Q 042906          221 LDWHQRNPLHYAAASGNVKMAQRLLEESK--QLAYKRDCNGETPLHLAAENGKL----KVLKLLINKYP----DAIEIRD  290 (415)
Q Consensus       221 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~----~~~~~~~  290 (415)
                      .|..|...+..+...+..+..+.+++.-.  -.....+..|...+..+...+..    .+++.++....    -.--..|
T Consensus       197 ~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d  276 (322)
T cd07920         197 QDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKD  276 (322)
T ss_pred             cCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCC
Confidence            35667777777777776554444443321  11224667777777777776653    34444443321    0113467


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHh
Q 042906          291 NSDRSILHVAAKHGNWNIVSFIL  313 (415)
Q Consensus       291 ~~g~t~l~~A~~~~~~~~~~~Ll  313 (415)
                      ..|.-.+..+.........+.++
T Consensus       277 ~~Gn~Viq~~l~~~~~~~~~~i~  299 (322)
T cd07920         277 QYGNYVIQTALDVAKEEQRELLV  299 (322)
T ss_pred             CcccHHHHHHHHhCCHHHHHHHH
Confidence            78888888877776654444443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=86.40  E-value=22  Score=31.14  Aligned_cols=269  Identities=14%  Similarity=0.067  Sum_probs=143.9

Q ss_pred             CCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhc-cccccCCCc
Q 042906           30 SSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYV-PAVNQAGPL  108 (415)
Q Consensus        30 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~  108 (415)
                      .|..|.-.|..+...++.+....+++.-      ......-..|..|...+......+..+....+++.- .++.     
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l------~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~-----   85 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEI------LPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVV-----   85 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHH------HHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHH-----
Confidence            4557778888888888888888887761      123334456777888888788877766555444431 1111     


Q ss_pred             chhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCC--CCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCC
Q 042906          109 PVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD--SVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT  186 (415)
Q Consensus       109 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  186 (415)
                            --..+..|.-.+..+...+..+....+++.-  .-..-..+..|...+..+......+..+.+++         
T Consensus        86 ------~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~---------  150 (322)
T cd07920          86 ------RLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIID---------  150 (322)
T ss_pred             ------HHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHH---------
Confidence                  1135667777776666666544444443321  10111233444444444443333333222221         


Q ss_pred             CCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHH----HHHHHHHhchhhhhccCCCCCCH
Q 042906          187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK----MAQRLLEESKQLAYKRDCNGETP  262 (415)
Q Consensus       187 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~----~~~~Ll~~~~~~~~~~~~~g~t~  262 (415)
                                            .+.....  .-..+..|...+.........+    +++.+...-..  ...|..|+..
T Consensus       151 ----------------------~l~~~~~--~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~--L~~d~~Gn~v  204 (322)
T cd07920         151 ----------------------AFKGNCV--ALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALE--LVQDQFGNYV  204 (322)
T ss_pred             ----------------------HHHHHHH--HHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHH--HhcCCchhhH
Confidence                                  1111100  0112334444444444443333    33333333222  2467889988


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCC--ccccccCCCCcHHHHHHhcCCH----HHHHHHhhCCC--cccccccCCCCCCcHHH
Q 042906          263 LHLAAENGKLKVLKLLINKYPD--AIEIRDNSDRSILHVAAKHGNW----NIVSFILKSPE--MENLINLVDRNGNTPLH  334 (415)
Q Consensus       263 L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~~~~--~~~~~~~~~~~g~t~l~  334 (415)
                      +..+...+..+..+.+++.-..  .--..+..|...+..+......    .+++.++....  ....-=..|..|+-.+.
T Consensus       205 vq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq  284 (322)
T cd07920         205 VQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQ  284 (322)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHH
Confidence            9988888766544444433211  0124677888888888887753    45555554321  11112256889999999


Q ss_pred             HHHhcCChHHHHHHhh
Q 042906          335 LAAMGLHSDVVFTLSR  350 (415)
Q Consensus       335 ~A~~~~~~~~~~~Ll~  350 (415)
                      .+.........+.++.
T Consensus       285 ~~l~~~~~~~~~~i~~  300 (322)
T cd07920         285 TALDVAKEEQRELLVE  300 (322)
T ss_pred             HHHHhCCHHHHHHHHH
Confidence            9998887665555543

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.13  E-value=9.3  Score=35.10  Aligned_cols=161  Identities=14%  Similarity=0.114  Sum_probs=90.1

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHH
Q 042906          126 LHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYD  205 (415)
Q Consensus       126 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  205 (415)
                      +..|+.+++.+-+..+++...-........+.....+.-..|..+++..+.            .+..+-+.+|...|+++
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~------------~D~~~rFeLAl~lg~L~  335 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV------------TDPDHRFELALQLGNLD  335 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS------------S-HHHHHHHHHHCT-HH
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc------------CChHHHhHHHHhcCCHH
Confidence            556888888887666655332222233444556666666777777766555            34457778888888888


Q ss_pred             HHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Q 042906          206 IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA  285 (415)
Q Consensus       206 ~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~  285 (415)
                      ....+........     .....-..|...|+.++++.-+++..+...        .+.+....|+.+-++.|.+..   
T Consensus       336 ~A~~~a~~~~~~~-----~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~--------L~lLy~~~g~~~~L~kl~~~a---  399 (443)
T PF04053_consen  336 IALEIAKELDDPE-----KWKQLGDEALRQGNIELAEECYQKAKDFSG--------LLLLYSSTGDREKLSKLAKIA---  399 (443)
T ss_dssp             HHHHHCCCCSTHH-----HHHHHHHHHHHTTBHHHHHHHHHHCT-HHH--------HHHHHHHCT-HHHHHHHHHHH---
T ss_pred             HHHHHHHhcCcHH-----HHHHHHHHHHHcCCHHHHHHHHHhhcCccc--------cHHHHHHhCCHHHHHHHHHHH---
Confidence            8777765543211     112344567777888888888777665542        456667777777777776531   


Q ss_pred             cccccCCCCcHHHHHHhcCCH-HHHHHHhhCC
Q 042906          286 IEIRDNSDRSILHVAAKHGNW-NIVSFILKSP  316 (415)
Q Consensus       286 ~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll~~~  316 (415)
                        ....+-+.+++.+...|+. ++++.|.+.|
T Consensus       400 --~~~~~~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  400 --EERGDINIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             --HHTT-HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             --HHccCHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence              1111223566666666665 4667777665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PLN03077 Protein ECB2; Provisional

Probab=80.42  E-value=73  Score=32.62  Aligned_cols=42  Identities=7%  Similarity=-0.156  Sum_probs=23.5

Q ss_pred             HHHHHHcCChhHHHHHHhhccccccCCCCCCCH-HHHHHHhCCHHH
Q 042906            5 LLEVLRNGDENKIKQLALRQNIFSTSSPGGNTV-LHMAVRFRNQQV   49 (415)
Q Consensus         5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~   49 (415)
                      +...++.|+++....+++.-...+   ..-++. +...++.|..+-
T Consensus       229 i~~y~k~g~~~~A~~lf~~m~~~d---~~s~n~li~~~~~~g~~~e  271 (857)
T PLN03077        229 ITMYVKCGDVVSARLVFDRMPRRD---CISWNAMISGYFENGECLE  271 (857)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCC---cchhHHHHHHHHhCCCHHH
Confidence            344567788888888887654332   223333 333445555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	415
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-21
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-18
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-11
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-08
1uoh_A	226	Human Gankyrin Length = 226		6e-10
1uoh_A	226	Human Gankyrin Length = 226		2e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-08
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		4e-08
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		5e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-07
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		4e-07
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-07
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-07
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		5e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		5e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		6e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		9e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		4e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		7e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		7e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 175/381 (45%), Gaps = 43/381 (11%)
Query: 10  RNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL 69
           R G  N +K L       + ++  G+T LH+A R  + + +  +L ++   A       +
Sbjct: 89  RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA------CM 142
Query: 70  RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA 129
            +K     TPLH+AA+ G   +   +++     N AG               G TPLH A
Sbjct: 143 TKKGF---TPLHVAAKYGKVRVAELLLERDAHPNAAGK-------------NGLTPLHVA 186
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLP 189
           V + +  ++++L+ +   P S     Y TPL IA      + A  ++     S N   + 
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGY-TPLHIAAKQNQVEVARSLLQYG-GSANAESV- 243
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
             +T LH    ++ +  MV +L + +   +  +     PLH  A  G+V +A  L++   
Sbjct: 244 QGVTPLHLAA-QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
Query: 250 QL-AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 308
            + A  R   G TPLH+A+  G +K++K L+    D +  +     S LH AA+ G+ +I
Sbjct: 303 MVDATTR--MGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDI 359
Query: 309 VSFILK---SPEMENLINLVDRNGNTPLHLAA-MGLHS--DVVFTLSRHKS-VNIRAKNR 361
           V+ +LK   SP      N V  +G TPL +A  +G  S  DV+  ++   S V +  K+R
Sbjct: 360 VTLLLKNGASP------NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 413
Query: 362 SARNNIALEIAEITRADGKEI 382
            +      EI +++  +G+E+
Sbjct: 414 MSFPETVDEILDVSEDEGEEL 434

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 5/123 (4%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
           R PLH AA +G++++ + LLE    +  K D NG TPLHLAA NG L+V+KLL+    D 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
           +  +D + R+ LH+AA++G+  +V  +L++      +N  D+NG TPLHLAA   H +VV
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVV 117
Query: 346 FTL 348
             L
Sbjct: 118 KLL 120

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267
           VK L  N   ++  D   R PLHYAA  G+ ++ + L+ +   +  K D +G TPLH AA
Sbjct: 20  VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDR 327
           + G  +++KLLI+K  D +  +D+  R+ LH AAK G+  IV  ++        +N  D 
Sbjct: 79  KEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDS 134
Query: 328 NGNTPLHLA 336
           +G TPL LA
Sbjct: 135 DGRTPLDLA 143

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267
           VK L  N   ++  D   R PLH+AA +G+ ++ + L+ +   +  K D +G TPLH AA
Sbjct: 20  VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDR 327
           ENG  +V+KLLI+K  D +  +D+  R+ LH AA++G+  +V  ++        +N  D 
Sbjct: 79  ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSR 350
           +G TPL LA    + +VV  L +
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEK 157

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA  G++++ + LL+    +  K D +G 
Sbjct: 11  RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           TPLHLAA  G L+++++L+    D +  +D    + LH+AA+ G+  IV  +LK+     
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 126
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
            +N  D+ G TP  LA    H D+   L +
Sbjct: 127 -VNAQDKFGKTPFDLAIREGHEDIAEVLQK 155

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           +D +G TPLHLAA  G L+++++L+    D +  +D    + LH+AA+ G+  IV  +LK
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAE 373
           +      +N  D++G TPLHLAA   H ++V  L +    ++ A+++  +    L I E
Sbjct: 90  AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIRE 144

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
           NG TPLHLAA NG L+V+KLL+    D +  +D + R+ LH+AA++G+  +V  +L++  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
               +N  D+NG TPLHLAA   H +VV  L
Sbjct: 60  D---VNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           D   R PLHYAA +G+ ++ + LL +      K D +G TPLH AAENG  +++KLL++K
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 282 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
             D    +D+  R+ LH AA++G+  IV  +L         N  D +G TPL LA
Sbjct: 93  GADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD---PNTSDSDGRTPLDLA 143

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA  G++++ + LL+    +  K D +G 
Sbjct: 11  RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           TPLHLAA  G L+++++L+    D +  +D    + LH+AA+ G+  IV  +LK+     
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 126
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
            +N  D+ G TP  LA    + D+   L +
Sbjct: 127 -VNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           +D +G TPLHLAA  G L+++++L+    D +  +D    + LH+AA+ G+  IV  +LK
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
           +      +N  D++G TPLHLAA   H ++V  L +    ++ A+++  +    L I
Sbjct: 90  AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAI 142

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
           +R+PLH AA +G+V +   L++    +    + +  TPL  AAEN  L+ +K LI K   
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLI-KAGA 68
Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
            ++ +D    + LH+AAK G++ +V ++L + +M+  +N  D  G TP+  A    H D+
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDL 126
Query: 345 V-FTLSRHKSVNIRAKNRSARNNIALEIAEIT 375
           V   LS+   +NIR        NI L  A  +
Sbjct: 127 VKLLLSKGSDINIRDN----EENICLHWAAFS 154

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267
           VK L  N   ++  D   + PLH AA +G+ ++ + LL +       +D +G+TPLHLAA
Sbjct: 20  VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDR 327
           ENG  +V+KLL+++  D    +D+  ++ LH+AA++G+  +V  +L         N  D 
Sbjct: 79  ENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD---PNTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSR 350
           +G TPL LA    + +VV  L +
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEK 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 10/126 (7%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           D NG TPLHLAA NG+L+++++L+    D +   D++  + LH+AA  G+  IV  +LK 
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT 375
                 +N  DR G TPLHLAA+    ++V  L +H +      + +A++ + L   +I+
Sbjct: 95  GAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA------DVNAQDALGLTAFDIS 145
Query: 376 RADGKE 381
              G+E
Sbjct: 146 INQGQE 151

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 15/141 (10%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCN-- 258
           R   D  V+IL  N   ++  DW    PLH AA +G++++ + LL+      Y  D N  
Sbjct: 23  RAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK------YGADVNAW 76
Query: 259 ---GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
              G TPLHLAA+NG L+++++L+    D +  +D    + LH+AA  G+  IV  +LK 
Sbjct: 77  DNYGATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 316 PEMENLINLVDRNGNTPLHLA 336
                 +N  D+ G T   ++
Sbjct: 136 GAD---VNAQDKFGKTAFDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           D  G TPLHLAA+ G L+++++L+ KY   +   DN   + LH+AA +G+  IV  +LK 
Sbjct: 44  DWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
                 +N  D  G TPLHLAA   H ++V  L ++ + ++ A+++  +    + I
Sbjct: 103 GAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA++G++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGI 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           TPLHLAA  G L+++++L+    D +   DN   + LH+AAK+G+  IV  +LK      
Sbjct: 82  TPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           D +G TPLHLAA NG L+++++L+    D +   D +  + LH+AA  G+  IV  +LK 
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
                 +N  D +G+TPLHLAA   H ++V  L +H + ++ A+++  +    + I
Sbjct: 103 GAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           +D +G TPLHLAA  G L+++++L+    D +  +D    + LH+AA+ G+  IV  +LK
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
           +      +N  D++G TPLHLAA   H ++V  L +    ++ A+++  +    + I
Sbjct: 102 AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISI 154

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N    +  D + R PLH AAA G++++ + LL     +    D NG 
Sbjct: 11  RAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGT 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           TPLHLAA  G L+++++L+ KY   +  +D +  + L++AA  G+  IV  +LK      
Sbjct: 70  TPLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD-- 126
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 127 -VNAQDKFGKTAFDIS 141

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
           AA  G+   +++L+    DA    D+  R+ LH+AA  G+  IV  +L++      +N V
Sbjct: 9   AARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD---VNAV 64
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 363
           D NG TPLHLAA   H ++V  L ++ + ++ AK+ + 
Sbjct: 65  DTNGTTPLHLAASLGHLEIVEVLLKYGA-DVNAKDATG 101

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA  G+ ++ + LL+    +   RD +G 
Sbjct: 23  RAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGW 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           TPLHLAA+NG L+++++L+ KY   +  +D    + LH+AA  G+  IV  +LK      
Sbjct: 82  TPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
            D  G TPLHLAA  G  +++++L+    D +  RD    + LH+AA +G+  IV  +LK
Sbjct: 43  HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
                  +N  D  G TPLHLAA   H ++V  L +H + ++ A+++  +    + I
Sbjct: 102 YGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 10/191 (5%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
           +SL    D +  T LH A +  H  ++  L++   VP +  + A  +PL IA  A  ++ 
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
              ++ K  + +N     +  T LH+   +  ++I V +L  G N    D  D ++   +
Sbjct: 89  VKALLGKGAQ-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AAA GN+KM   LL   K     +D  G TPLHLA +  +++  KLL+++   +I I 
Sbjct: 144 HRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIE 201
Query: 290 DNSDRSILHVA 300
           +  +++ L VA
Sbjct: 202 NKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 42/160 (26%)
Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
            +K L  R D   R  LH+A ++G+ ++ + LL+    +  K D  G +PLH+AA  G+ 
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRD 86
Query: 273 KVLKLLINKY-----------------------------------PDAIEIRDNSDRSIL 297
           +++K L+ K                                    PDA   +D+ + + +
Sbjct: 87  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAM 143
Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
           H AA  GN  ++  +L     +   N+ D  GNTPLHLA 
Sbjct: 144 HRAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHLAC 180

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 10/191 (5%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
           +SL    D +  T LH A +  H  ++  L++   VP +  + A  +PL IA  A  ++ 
Sbjct: 31  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
              ++ K  + +N     +  T LH+   +  ++I V +L  G N    D  D ++   +
Sbjct: 90  VKALLGKGAQ-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAM 144
Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AAA GN+KM   LL   K     +D  G TPLHLA +  +++  KLL+++   +I I 
Sbjct: 145 HRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIE 202
Query: 290 DNSDRSILHVA 300
           +  +++ L VA
Sbjct: 203 NKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 42/160 (26%)
Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
            +K L  R D   R  LH+A ++G+ ++ + LL+    +  K D  G +PLH+AA  G+ 
Sbjct: 29  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRD 87
Query: 273 KVLKLLINKY-----------------------------------PDAIEIRDNSDRSIL 297
           +++K L+ K                                    PDA   +D+ + + +
Sbjct: 88  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAM 144
Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
           H AA  GN  ++  +L     +   N+ D  GNTPLHLA 
Sbjct: 145 HRAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHLAC 181

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++ +D     PLH AA SG++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGF 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           TPLHLAA  G L+++++L+ KY   +   D +  + LH+AA  G+  IV  +LK      
Sbjct: 82  TPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           D  G TPLHLAA +G L+++++L+    D ++  D    + LH+AA  G+  IV  +LK 
Sbjct: 44  DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
                 +N  D  G+TPLHLAA   H ++V  L ++ + ++ A+++  +    + I
Sbjct: 103 GAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D +   PLH AA  G++++ + LL+    +    D +G 
Sbjct: 23  RAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV-NALDFSGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           TPLHLAA+ G L+++++L+ KY   +   D    + LH+AA  G+  IV  +LK      
Sbjct: 82  TPLHLAAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
            D  G+TPLHLAA  G L+++++L+    D +   D S  + LH+AAK G+  IV  +LK
Sbjct: 43  EDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
                  +N  D  G+TPLHLAA   H ++V  L ++ + ++ A+++  +    + I
Sbjct: 102 YGAD---VNADDTIGSTPLHLAADTGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D+    PLH AA  G++++ + LL+    +  K D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGV 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           TPLHLAA  G L+++++L+    D +   D+   + LH+AAK G+  IV  +LK+     
Sbjct: 82  TPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           RD  G TPLHLAA  G L+++++L+    D +  +D+   + LH+AA+ G+  IV  +LK
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
           +      +N  D +G TPLHLAA   H ++V  L ++   ++ A+++  +    + I
Sbjct: 102 NGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKN-GADVNAQDKFGKTAFDISI 154

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           D  G TPLHL   NG L+++++L+ KY   +   D S  + LH+AA  G+  IV  +LK 
Sbjct: 44  DWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
                 +N +D  G TPLHLAA   H ++V  L ++ + ++ A+++  +    + I
Sbjct: 103 GAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPD--AIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
           D +G TPLHLAA  G L+++++L+    D  AI+I  ++    LH+AA  G+  IV  +L
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP---LHLAALIGHLEIVEVLL 100
Query: 314 KSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
           K       +N VD  G+TPLHLAA+  H ++V  L +H + ++ A+++  +    + I
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPD--AIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
           D +G TPLHLAA  G L+++++L+    D  AI+I  ++    LH+AA  G+  IV  +L
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTP---LHLAALIGHLEIVEVLL 100
Query: 314 KSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
           K       +N VD  G+TPLHLAA+  H ++V  L +H + ++ A+++  +    + I
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           D  G TPLHLAA +G L+++++L+    D ++  D    + LH+AA  G+  IV  +LK+
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
                 +N +D +G TPLHLAA   + ++V  L +H + ++ A+++  +    + I
Sbjct: 103 GAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 10/191 (5%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
           +SL    D +  T LH A +  H  ++  L++   VP +  + A  +PL IA  A  ++ 
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
              ++ K    +N     +  T LH+   +  ++I V +L  G N +  D  D      +
Sbjct: 89  VKALLVKGAH-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AAA GN+KM   LL   K     +D  G TPLHLA +  +++  K L+ +   +I I 
Sbjct: 144 HRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIE 201
Query: 290 DNSDRSILHVA 300
           +  +++ L VA
Sbjct: 202 NKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 42/160 (26%)
Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
            +K L  R D   R  LH+A ++G+ ++ + LL+    +  K D  G +PLH+AA  G  
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXD 86
Query: 273 KVLKLLINKY-----------------------------------PDAIEIRDNSDRSIL 297
           +++K L+ K                                    PDA   +D+ D + +
Sbjct: 87  EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAM 143
Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
           H AA  GN  +V  +L     +   N+ D  GNTPLHLA 
Sbjct: 144 HRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPLHLAC 180

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 243 RLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK 302
           R+L  +       D +G TPLHLAA NG L+++++L+    D +   D++  + L +AA 
Sbjct: 31  RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAAL 89
Query: 303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS 362
            G+  IV  +LK+      +N  D  G+TPLHLAAM  H ++V  L ++ + ++ A+++ 
Sbjct: 90  FGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKF 145
Query: 363 ARNNIALEI 371
            +    + I
Sbjct: 146 GKTAFDISI 154

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
            D +G+TPLHLAA  G L+++++L+    D +   D    + LH+AA +G+  IV  +LK
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
           +      +N  D  G TPLHLAA   H ++V  L ++ + ++ A+++  +    + I
Sbjct: 102 NGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 10/191 (5%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
           +SL    D +  T LH A +  H  ++  L++   VP +  + A  +PL IA  A  ++ 
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
              ++ K    +N     +  T LH+   +  ++I V +L  G N +  D  D      +
Sbjct: 89  VKALLVKGAH-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AAA GN+KM   LL   K     +D  G TPLHLA +  +++  K L+ +   +I I 
Sbjct: 144 HRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIE 201
Query: 290 DNSDRSILHVA 300
           +  +++ L VA
Sbjct: 202 NKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 42/160 (26%)
Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
            +K L  R D   R  LH+A ++G+ ++ + LL+    +  K D  G +PLH+AA  G+ 
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRD 86
Query: 273 KVLKLLINKY-----------------------------------PDAIEIRDNSDRSIL 297
           +++K L+ K                                    PDA   +D+ D + +
Sbjct: 87  EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAM 143
Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
           H AA  GN  +V  +L     +   N+ D  GNTPLHLA 
Sbjct: 144 HRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPLHLAC 180

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL-AYKRDCNG 259
           R   D  V+IL  N   ++  D     PLH AA  G++++ + LL+    + AY  D  G
Sbjct: 23  RAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLG 80
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 319
            TPLHLAA  G L+++++L+    D +  +D++  + LH+AA  G+  IV  +LK     
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD- 138
Query: 320 NLINLVDRNGNTPLHLA 336
             +N  D+ G T   ++
Sbjct: 139 --VNAQDKFGKTAFDIS 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           D  G TPLHLAA  G L+++++L+    D +   D    + LH+AA  G+  IV  +LK+
Sbjct: 44  DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
                 +N  D NG TPLHLAA   H ++V  L ++ + ++ A+++  +    + I
Sbjct: 103 GAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 27/150 (18%)
Query: 240 MAQRLLEESKQ---------LAYKRDCN-----GETPLHLAAENGKLKVLKLLINKYPDA 285
           + ++LLE ++          +A   D N     G TPLHLAA  G L+++++L+    D 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 286 IEIRDNSDRSI----LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLH 341
                N+D S+    LH+AA  G+  +V  +LK+      +N  D NG TPLHLAA   H
Sbjct: 74  -----NADDSLGVTPLHLAADRGHLEVVEVLLKNGAD---VNANDHNGFTPLHLAANIGH 125
Query: 342 SDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
            ++V  L +H + ++ A+++  +    + I
Sbjct: 126 LEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 28/220 (12%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
           D + NTPL  AV  + +R++  L +  + P+ Y NK+ ++ L  A   R      +    
Sbjct: 163 DCDENTPLXLAVLARRRRLVAYLXKAGADPTIY-NKSERSALHQAAANRDFGXXVY---- 217
Query: 179 SPESLNTTRLPDEL--------TLLHFVVMRQNYDIMV--KILGTNKELID-----RLD- 222
               LN+T+L  ++        T L  V   +  D +   K+L      +D     R D 
Sbjct: 218 ---XLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274
Query: 223 --WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
             +  R  LHYAA   N  + + L+ E      K+D +G+TP+ LAA+ G+++V+  LI 
Sbjct: 275 EKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Query: 281 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEME 319
           +   ++E  D +D +   +A  + + NIV    +  PE E
Sbjct: 335 QGA-SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 224 HQRNPLHYAAASGNVKMAQRLL-EESKQL------AYKRDCNGETPLHLAAENGKLKVLK 276
           H R  LH+ A++ + + ++ L+  E+K+           DC+  TPL LA    + +++ 
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
            L     D   I + S+RS LH AA + ++    + L S +++  I  +DRNG T L + 
Sbjct: 184 YLXKAGADPT-IYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIV 242
Query: 337 AMGLHSDVVFT 347
           A     D V +
Sbjct: 243 AHNEGRDQVAS 253

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
           Q  PLH+AA    V + + LL+    + + +D  G  PLH A   G  +V +LL+ K+  
Sbjct: 42  QSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV-KHGA 99
Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLVDRNGNTPLHLAAMG 339
            + + D    + LH AA  G + I   +L+    P  +N      R+GNTPL L   G
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVKDG 151

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
           +G TPLH AA+NG  + +K L++K  D +  R     + LH+AAK+G+  IV  +L    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVNIRAKNRS 362
               +N   ++GNTP HLA    H ++V  L ++   VN R+   S
Sbjct: 67  D---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
           Q  PLH+AA    V + + LL+    + + +D  G  PLH A   G  +V +LL+ K+  
Sbjct: 44  QSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV-KHGA 101
Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLVDRNGNTPLHLAAMG 339
            + + D    + LH AA  G + I   +L+    P  +N      R+GNTPL L   G
Sbjct: 102 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVKDG 153

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
           Q  PLH+AA    V + + LL+    + + +D  G  PLH A   G  +V +LL+ K+  
Sbjct: 46  QSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV-KHGA 103
Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLVDRNGNTPLHLAAMG 339
            + + D    + LH AA  G + I   +L+    P  +N      R+GNTPL L   G
Sbjct: 104 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVKDG 155

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSI-LHVAAKHGNWNIVSFILKSP 316
           +G +PLH+AA +G+  ++ LL+    +A     N+D+++ LH+A + G++ +V  +L S 
Sbjct: 85  DGSSPLHVAALHGRADLIPLLLKHGANAGA--RNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITR 376
              N  +L   +GNTPL  A  G H ++V  L +H   +I A N   + N AL  A I +
Sbjct: 143 AKPNKKDL---SGNTPLIYACSGGHHELVALLLQH-GASINASNN--KGNTALHEAVIEK 196

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 21/222 (9%)
Query: 75  MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH 134
           M   PLH A        V E++   P            SL   +D +G  PLH +V+ Q 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 135 KRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE- 191
             +   L+ K  +     Y + +  TP  IA      +    + D+ P   +  ++ ++ 
Sbjct: 49  HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQG 107
Query: 192 LTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           +T LH  V ++ +++   ++  G +  + D+ +   + PLH AA+ G++K+ + L    K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QIPLHRAASVGSLKLIELLCGLGK 164
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
                +D  G TPL  A   G      LL+ KY    ++ DN
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 21/215 (9%)
Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGN---TPLHNAVTNQ 133
           +TPLHIA   GN   V  +V       Q G         R  DI  N   TPLH AV   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNL---FQQGG---------RELDIYNNLRQTPLHLAVITT 57
Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK-SPESLN-TTRLPDE 191
              V+R+LV   + P + +++  QT   +A + R       ++D  +P +L+   R  D 
Sbjct: 58  LPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116
Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQ-RNPLHYAAASGNVKMAQRLLEESKQ 250
           LT LH  V  +  +  V++L      ID +D    R+PL +A  + ++ M Q LL+    
Sbjct: 117 LTALHVAVNTECQET-VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
           +  +   +G + LH A+  G L +++ L+    D+
Sbjct: 176 VNAQM-YSGSSALHSASGRGLLPLVRTLVRSGADS 209

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 21/222 (9%)
Query: 75  MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH 134
           M   PLH A        V E++   P            SL   +D +G  PLH +V+ Q 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 135 KRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE- 191
             +   L+ K  +     Y + +  TP  IA      +    + D+ P   +  ++ ++ 
Sbjct: 49  HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQG 107
Query: 192 LTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           +T LH  V ++ +++   ++  G +  + D+ +   + PLH AA+ G++K+ + L    K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QIPLHRAASVGSLKLIELLCGLGK 164
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
                +D  G TPL  A   G      LL+ KY    ++ DN
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 21/222 (9%)
Query: 75  MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH 134
           M   PLH A        V E++   P            SL   +D +G  PLH +V+ Q 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 135 KRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE- 191
             +   L+ K  +     Y + +  TP  IA      +    + D+ P   +  ++ ++ 
Sbjct: 49  HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQG 107
Query: 192 LTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           +T LH  V ++ +++   ++  G +  + D+ +   + PLH AA+ G++K+ + L    K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QIPLHRAASVGSLKLIELLCGLGK 164
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
                +D  G TPL  A   G      LL+ KY    ++ DN
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252
           T LH+ V   N+ ++ ++L +    +D+ +    +P+   A +      Q  +E   QL 
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA--TLKTQDDIETVLQLF 170
Query: 253 YKRDCN------GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW 306
              + N      G+T L LA  +G++ V+K L+    D + ++D+   + L  A +HG+ 
Sbjct: 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHK 229
Query: 307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR 357
            I   +L  P  +  I+L DR+G+T L +A     S++   L  +  +NI+
Sbjct: 230 EIAGLLLAVPSCD--ISLTDRDGSTALMVALDAGQSEIASML--YSRMNIK 276

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++ +D     PLH AA  G++++ + LL+    +   RD  G 
Sbjct: 23  RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           TPLHLAA  G L+++++L+ +Y   +  +D   ++   ++  +GN ++   + K
Sbjct: 82  TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
           GN    +  L+ ++    + D +G +PLH A   G+  V+++LI +    I + +  D +
Sbjct: 16  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDT 74
Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
            LH+AA HG+ +IV  +L   + +  IN V+ +GN PLH A  
Sbjct: 75  PLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 114

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
           GN    +  L+ ++    + D +G +PLH A   G+  V+++LI +    I + +  D +
Sbjct: 11  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDT 69
Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
            LH+AA HG+ +IV  +L   + +  IN V+ +GN PLH A  
Sbjct: 70  PLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 109

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++ +D     PLH AA  G++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           TPLHLAA  G L+++++L+ +Y   +  +D   ++   ++  +GN ++   + K
Sbjct: 82  TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           D  G TPLHLAA+ G L+++++L+    D +   D+  R+ LH+AA  G+  IV  +L  
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 316 PEMENLINLVDRNGNTPLHLA 336
            E    +N  D+ G T   ++
Sbjct: 101 -EYGADVNAQDKFGKTAFDIS 120

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 229 LHYAAASGNVKMAQRLLEES---KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
           LH+AA +  + + +  + +     QL    D N  TPLH A   G L ++  L+ KY   
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLG--GDLN-STPLHWATRQGHLSMVVQLM-KYGAD 101
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHS 342
             + D    S +H+AA+ G+ +IV++++   +    ++++D+NG TPL  AA   HS
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHS 155

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++ LD     PLH AA  G++++ + LL+      Y  D N E
Sbjct: 23  RAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK------YGADVNAE 76
Query: 261 -----TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
                TPLHLAA  G L+++++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 77  DNFGITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           D +G TPLHLAA+ G L+++++L+ KY   +   DN   + LH+AA  G+  IV  +LK 
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 316 PEMENLINLVDRNGNTPLHLA 336
                 +N  D+ G T   ++
Sbjct: 103 GAD---VNAQDKFGKTAFDIS 120

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++ +D     PLH AA  G++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           TPLHLAA  G L+++++L+ +Y   +  +D   ++   ++  +GN ++   + K
Sbjct: 82  TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWH---QRNPLHYAAASGNVKMAQRLLE 246
           D  + LH  ++ +   + ++++   K  +  L++    Q+ PLH A  +   ++A+ LL 
Sbjct: 4   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 63
Query: 247 ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-----IEIRDNSDRSILHVAA 301
                   RD  G TPLHLA E G L  + +L            ++  + +  + LH+A+
Sbjct: 64  AGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 302 KHGNWNIVSFILKSPEMENLINLVD-RNGNTPLHLA 336
            HG   IV  ++    +   +N  +  NG T LHLA
Sbjct: 123 IHGYLGIVELLVS---LGADVNAQEPCNGRTALHLA 155

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS---P 316
           +TPLHLA    + ++ + L+    D  E+RD    + LH+A + G    V  + +S   P
Sbjct: 43  QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 317 EMENLINLVDRNGNTPLHLAAM 338
            + +++   + NG+T LHLA++
Sbjct: 102 HLHSILKATNYNGHTCLHLASI 123

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK--- 249
           T LH  V+    +I   +LG   +   R D+    PLH A   G +     L +      
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 250 --QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 307
              +    + NG T LHLA+ +G L +++LL++   D       + R+ LH+A    N +
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 308 IVSFILKSPEMENLINLVDRNGNTPLHLA 336
           +VS +LK       +N V   G +P  L 
Sbjct: 166 LVSLLLKCGAD---VNRVTYQGYSPYQLT 191

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS---P 316
           +TPLHLA    + ++ + L+    D  E+RD    + LH+A + G    V  + +S   P
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 317 EMENLINLVDRNGNTPLHLAAM 338
            + +++   + NG+T LHLA++
Sbjct: 105 HLHSILKATNYNGHTCLHLASI 126

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 136/325 (41%), Gaps = 44/325 (13%)
Query: 4   ELLEVLRNGDENKIKQLALRQNIFSTSSPG-GNTVLHMAVRFRNQQVIREILRQQNFIAL 62
           ELLE  R+G+E K+  L    N+   +S G  +T LH+A  +   ++++ +L+       
Sbjct: 27  ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ------- 79
Query: 63  RLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEG 122
             H + +  K+     PLH A   G+  +   ++K+   VN               D+  
Sbjct: 80  --HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-------------AMDLWQ 124
Query: 123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPES 182
            TPLH A +     V  +L+   + P + +N   ++ + +A    L +   +   K    
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEF-KGHSL 182
Query: 183 LNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK--- 239
           L   R  D        + +    + ++I+   +             LH A AS + K   
Sbjct: 183 LQAAREAD--------LAKVKKTLALEIINFKQP------QSHETALHCAVASLHPKRKQ 228
Query: 240 MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHV 299
           +A+ LL +   +  K   +  TPLH+AAE     V+++L +K+   +   D+  ++ LH 
Sbjct: 229 VAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVL-HKHGAKMNALDSLGQTALHR 286
Query: 300 AAKHGNWNIVSFILKSPEMENLINL 324
           AA  G+      +L      ++I+L
Sbjct: 287 AALAGHLQTCRLLLSYGSDPSIISL 311

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYP 283
           ++++ L  AA SGN +    LL       +  D    TPLHLAA   ++++++LL+    
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 284 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSD 343
           D +  +D      LH A  +G++ +   +LK       +N +D    TPLH AA     +
Sbjct: 83  D-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA---CVNAMDLWQFTPLHEAASKNRVE 138
Query: 344 VVFTLSRHKS----VNIRAKN 360
           V   L  H +    VN   K+
Sbjct: 139 VCSLLLSHGADPTLVNCHGKS 159

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
           G+  +A  LL++       +D +G +P+H AA  G L  LK+L+    D + + D +   
Sbjct: 46  GSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGAL 103
Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            +H+A + G+  +VSF+      E+ ++  D  G TPL LA      D+V  L  H
Sbjct: 104 PIHLAVQEGHTAVVSFL----AAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
           G+  +A  LL++       +D +G +P+H AA  G L  LK+L+    D + + D +   
Sbjct: 52  GSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGAL 109
Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            +H+A + G+  +VSF+      E+ ++  D  G TPL LA      D+V  L  H
Sbjct: 110 PIHLAVQEGHTAVVSFL----AAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           +H  AA G +   +  L +   L  K D  G TPL  A+  G+++ ++ L+    D   I
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
                 S L +A+  G  +IV  +L   E +  IN+ D NG TPL  A  G H   V  L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 349 SRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHL 386
              +  ++  +  S    + L +A   R   + I+ H+
Sbjct: 122 -LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           +H  AA G +   +  L +   L  K D  G TPL  A+  G+++ ++ L+    D   I
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
                 S L +A+  G  +IV  +L   E +  IN+ D NG TPL  A  G H   V  L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
Query: 349 SRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHL 386
              +  ++  +  S    + L +A   R   + I+ H+
Sbjct: 122 LA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           LH A+  G++   + LL+       K D  G TPLH A  +G LKV++LL+ ++   +  
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLL-QHKALVNT 71
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 324
               + S LH AAK+G+ +IV  +L      N +N+
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 31/174 (17%)
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           D LT LH   +  N D MVK L  N   I++ D     PLH AA+ G + +A+ L+ +  
Sbjct: 72  DGLTALHQACIDDNVD-MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE----------IRD--------- 290
            +    +  G+TPL +A E    ++L+  +N+    IE          +RD         
Sbjct: 131 HVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 291 -------NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
                   S  + LHVAA  G   ++  ++++      +N+ D +G TPLH AA
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYDGWTPLHAAA 240

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 26/166 (15%)
Query: 1   MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
           + ++LLE  R G +++++ L      F+T   G  + LH+A ++ +      +LR     
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEVLLRA---- 56
Query: 61  ALRLHYSLLRQ-KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRD 119
                  + R  +  +D TPLH+AA  G+  IV  ++K+   VN              +D
Sbjct: 57  ------GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-------------KD 97
Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
           +   T LH A  + H+ V+ +L+ K        +K  +T   I+ID
Sbjct: 98  MLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFCKTAFDISID 142

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N       DW   +PLH AA  G+    + LL    +    RD   +
Sbjct: 11  RAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLL----RAGVSRDARTK 65
Query: 261 ---TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
              TPLH+AA  G   ++++L+    D +  +D    + LH A +H +  +V  ++K
Sbjct: 66  VDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK 121

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
           +  D  G +PLHLAA+ G     ++L+ +   + + R   DR+ LH+AA  G+ NIV  +
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 313 LKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
           LK       +N  D    T LH A    H +VV  L ++ +
Sbjct: 87  LKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA   ++++ + LL+    +    D +G 
Sbjct: 23  RAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           TPLHLAA  G L+++++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 82  TPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D +   PL+ A A G++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGF 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           TPLHLAA  G L++ ++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D+    PLH AA  G++++ + LL+    +    +  G 
Sbjct: 23  RAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           TPLHLAA    L+++++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 82  TPLHLAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA + ++++ + LL+    +    D  GE
Sbjct: 23  RAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV-NAIDAIGE 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           TPLHL A  G L+++++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 82  TPLHLVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
           LL    PD   ++D +  +++H AA+ G  + +  +L   E +  +N+ D  GN PLHLA
Sbjct: 57  LLRGANPD---LKDRTGFAVIHDAARAGQLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374
           A   H  VV  L +H + N+  +N   + + A ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 229 LHYAAASGNV-KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
           +H  AA G +  +A R+  E + +    D  G TPL  AA +G++ V++ L+    D  +
Sbjct: 23  VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 79
Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
           +      S L +A   G  +IV  +L        +N  D NG TPL  A  G H   V  
Sbjct: 80  LLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKM 136
Query: 348 LSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALK 392
           L      +   +  S  N++ L +A   R+  + I+ HL LK L+
Sbjct: 137 L-LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQ 179

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 229 LHYAAASGNV-KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
           +H  AA G +  +A R+  E + +    D  G TPL  AA +G++ V++ L+    D  +
Sbjct: 5   VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 61
Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
           +      S L +A   G  +IV  +L        +N  D NG TPL  A  G H   V  
Sbjct: 62  LLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKM 118
Query: 348 LSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALK 392
           L      +   +  S  N++ L +A   R+  + I+ HL LK L+
Sbjct: 119 L-LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQ 161

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
           +D NG TPLHLAA NG L+V+KLL+    D +  +D   ++   ++  +GN ++   +
Sbjct: 35  KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
           +D NG TPLHLAA NG L+V+KLL+    D +  +D   ++   ++  +GN ++   +
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 229 LHYAAASGNV-KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
           +H  AA G +  +A R+  E + +    D  G TPL  AA +G++ V++ L+    D  +
Sbjct: 7   VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 63
Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
           +      S L +A   G  +IV  +L        +N  D NG TPL  A  G H   V  
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 348 LSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALK 392
           L      +   +  S  N++ L +A   R+  + I+ HL LK L+
Sbjct: 121 L-LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQ 163

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
           LL    PD   ++D +  +++H AA+ G  + +  +L   E +  +N+ D  GN PLHLA
Sbjct: 57  LLRGANPD---LKDRTGNAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374
           A   H  VV  L +H + N+  +N   + + A ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
           LL    PD   ++D +  +++H AA+ G  + +  +L   E +  +N+ D  GN PLHLA
Sbjct: 57  LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374
           A   H  VV  L +H + N+   +R+ + + A ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLARL 146

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
           LL    PD   ++D +  +++H AA+ G  + +  +L   E +  +N+ D  GN PLHLA
Sbjct: 57  LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374
           A   H  VV  L +H + N+   +R+ + + A ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLARL 146

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 99/260 (38%), Gaps = 44/260 (16%)
Query: 26  IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR 85
           +F   +  G+T LH+AV  +++  +  +L    F A    +  L  +N + +T LH+AA 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLL---GFSA---GHEYLDLQNDLGQTALHLAAI 54
Query: 86  IGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145
           +G  + V ++      V           L   R   G+T LH A   +      +L++  
Sbjct: 55  LGEASTVEKLYAAGAGV-----------LVAERG--GHTALHLACRVRAHTCACVLLQPR 101
Query: 146 SVPSSYINKAYQTPLSIAIDARLNDS-ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNY 204
               S+   A  T L+ + D   + S A   +D  P   N     DE   L      +NY
Sbjct: 102 P---SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA--ENY 156
Query: 205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLH 264
           D                      PLH A    + +M + L +    L       G TPLH
Sbjct: 157 D-------------------GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197
Query: 265 LAAENGKLKVLKLLINKYPD 284
           LA E     VL+LL+    D
Sbjct: 198 LAVEAQAASVLELLLKAGAD 217

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 99/260 (38%), Gaps = 44/260 (16%)
Query: 26  IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR 85
           +F   +  G+T LH+AV  +++  +  +L    F A    +  L  +N + +T LH+AA 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLL---GFSA---GHEYLDLQNDLGQTALHLAAI 54
Query: 86  IGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145
           +G  + V ++      V           L   R   G+T LH A   +      +L++  
Sbjct: 55  LGEASTVEKLYAAGAGV-----------LVAERG--GHTALHLACRVRAHTCACVLLQPR 101
Query: 146 SVPSSYINKAYQTPLSIAIDARLNDS-ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNY 204
               S+   A  T L+ + D   + S A   +D  P   N     DE   L      +NY
Sbjct: 102 P---SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA--ENY 156
Query: 205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLH 264
           D                      PLH A    + +M + L +    L       G TPLH
Sbjct: 157 D-------------------GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197
Query: 265 LAAENGKLKVLKLLINKYPD 284
           LA E     VL+LL+    D
Sbjct: 198 LAVEAQAASVLELLLKAGAD 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-28
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-13
2pnn_A	273	Transient receptor potential cation channel subfa	3e-27
2pnn_A	273	Transient receptor potential cation channel subfa	6e-24
2pnn_A	273	Transient receptor potential cation channel subfa	4e-22
2pnn_A	273	Transient receptor potential cation channel subfa	7e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-05
2etb_A	256	Transient receptor potential cation channel subfam	9e-24
2etb_A	256	Transient receptor potential cation channel subfam	3e-20
2etb_A	256	Transient receptor potential cation channel subfam	3e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-23
2rfa_A	232	Transient receptor potential cation channel subfa	1e-20
2rfa_A	232	Transient receptor potential cation channel subfa	5e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  148 bits (377), Expect = 1e-40
 Identities = 90/367 (24%), Positives = 150/367 (40%), Gaps = 48/367 (13%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
             T LH A R  +  +++ +L          + +          TPLHIAAR G+   V 
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLE---------NNANPNLATTAGHTPLHIAAREGHVETVL 130

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            +++   +                   +G TPLH A      RV  +L+E+D+ P++   
Sbjct: 131 ALLEKEASQA-------------CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AG 176

Query: 154 KAYQTPLSIAIDARLNDSACFIIDK--SPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL 211
           K   TPL +A+     D    ++ +  SP S       +  T LH    +   ++  + L
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW----NGYTPLHIAAKQNQVEV-ARSL 231

Query: 212 ---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE 268
              G +             PLH AA  G+ +M   LL +        + +G TPLHL A+
Sbjct: 232 LQYGGSANAESVQGV---TPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQ 287

Query: 269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRN 328
            G + V  +LI      ++       + LHVA+ +GN  +V F+L+    +  +N   + 
Sbjct: 288 EGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKL 343

Query: 329 GNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKNRSARNNIALEIAEITRADGKEIQKHLT 387
           G +PLH AA   H+D+V  L ++  S N  + +        L IA   R     +   L 
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD----GTTPLAIA--KRLGYISVTDVLK 397

Query: 388 LKALKTA 394
           +   +T+
Sbjct: 398 VVTDETS 404

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  139 bits (352), Expect = 3e-37
 Identities = 74/293 (25%), Positives = 121/293 (41%), Gaps = 39/293 (13%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
            TPLH+A+ +G+  IV  +++   + N               +++  TPLH A    H  
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNV-------------SNVKVETPLHMAARAGHTE 61

Query: 137 VIRILVEKDSVPSSYINKA---YQTPLSIAIDARLN--DSACFIIDK--SPESLNTTRLP 189
           V + L++  +     +N      QTPL  A  AR+   +    +++   +P    T    
Sbjct: 62  VAKYLLQNKA----KVNAKAKDDQTPLHCA--ARIGHTNMVKLLLENNANPNLATT---- 111

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
              T LH      + +  V  L   +     +      PLH AA  G V++A+ LLE   
Sbjct: 112 AGHTPLHIAAREGHVET-VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170

Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
                   NG TPLH+A  +  L ++KLL+ +          +  + LH+AAK     + 
Sbjct: 171 HP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVA 228

Query: 310 SF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 360
              +          N     G TPLHLAA   H+++V   LS+  + N+  K+
Sbjct: 229 RSLLQYGGS----ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  128 bits (324), Expect = 3e-33
 Identities = 60/308 (19%), Positives = 113/308 (36%), Gaps = 38/308 (12%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQ---QNFIALRLHYSLLRQKNLMDETPLHIAARIGNRA 90
           G T LH+A ++   +V   +L +    N                   TPLH+A    N  
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPN------------AAGKNGLTPLHVAVHHNNLD 193

Query: 91  IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
           IV  ++    + +                  G TPLH A       V R L++     ++
Sbjct: 194 IVKLLLPRGGSPH-------------SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 240

Query: 151 YINKAYQTPLSIAIDARLNDSACFIIDK--SPESLNTTRLPDELTLLHFVVMRQNYDIMV 208
             +    TPL +A      +    ++ K  +    N       LT LH V    +  +  
Sbjct: 241 -ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK----SGLTPLHLVAQEGHVPV-A 294

Query: 209 KILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE 268
            +L  +  ++D        PLH A+  GN+K+ + LL+    +   +   G +PLH AA+
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAAQ 353

Query: 269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRN 328
            G   ++ LL+           +   + L +A + G  ++   +    +  + + + D++
Sbjct: 354 QGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH 412

Query: 329 GNTPLHLA 336
             +     
Sbjct: 413 RMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  119 bits (300), Expect = 6e-30
 Identities = 66/266 (24%), Positives = 100/266 (37%), Gaps = 54/266 (20%)

Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIID 177
               G TPLH A    H  +++ L+++                     A  N     + +
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQR--------------------GASPN-----VSN 44

Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
                          T LH      + ++  K L  NK  ++      + PLH AA  G+
Sbjct: 45  V-----------KVETPLHMAARAGHTEV-AKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92

Query: 238 VKMAQRLLEESKQLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
             M + LLE     A        G TPLH+AA  G ++ +  L+ K             +
Sbjct: 93  TNMVKLLLE---NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFT 148

Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSV 354
            LHVAAK+G   +   +L   E +   N   +NG TPLH+A    + D+V   L R  S 
Sbjct: 149 PLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205

Query: 355 NIRAKNRS------ARNNIALEIAEI 374
           +  A N        A+ N  +E+A  
Sbjct: 206 HSPAWNGYTPLHIAAKQN-QVEVARS 230

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.9 bits (245), Expect = 1e-22
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 10/146 (6%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKL 277
                     PLH A+  G++ + + LL+         +   ETPLH+AA  G  +V K 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKY 65

Query: 278 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL--INLVDRNGNTPLHL 335
           L+      +  +   D++ LH AA+ G+ N+V  +L     EN    NL    G+TPLH+
Sbjct: 66  LLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLL-----ENNANPNLATTAGHTPLHI 119

Query: 336 AAMGLHSDVV-FTLSRHKSVNIRAKN 360
           AA   H + V   L +  S     K 
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKK 145

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  131 bits (331), Expect = 2e-35
 Identities = 53/313 (16%), Positives = 95/313 (30%), Gaps = 48/313 (15%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G+T LH+AV  +++  + + L     +     +  L  +N + +T LH+AA +G  + V 
Sbjct: 9   GDTALHLAVIHQHEPFL-DFL-----LGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
           ++      V              + +  G+T LH A   +      +L++         +
Sbjct: 63  KLYAAGAGVL-------------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGT 213
             Y    S                                           +        
Sbjct: 110 DTY-LTQSQDCTPD----------------------TSHAPAAVDSQPNPENEEEPRDED 146

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK 273
            +  ++  ++    PLH A    + +M + L +    L       G TPLHLA E     
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206

Query: 274 VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTP 332
           VL+LL+    D    R    R+ L  A    N  +                    +  +P
Sbjct: 207 VLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSP 261

Query: 333 LHLAAMGLHSDVV 345
              +     SD  
Sbjct: 262 CSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  114 bits (289), Expect = 1e-29
 Identities = 41/293 (13%), Positives = 89/293 (30%), Gaps = 56/293 (19%)

Query: 77  ETPLHIAARIGNRAIVSEIVKY---VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ 133
           +T LH+A    +   +  ++ +      ++             +++  G T LH A    
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLD-------------LQNDLGQTALHLAAILG 56

Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELT 193
               +  L    +       +   T L +A   R+             +     +     
Sbjct: 57  EASTVEKLYAAGAGVLV-AERGGHTALHLA--CRVR------------AHTCACV----- 96

Query: 194 LLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRN---PLHYAAASGNVKMAQRLLEESKQ 250
           LL                 ++  L    D        P    +        +   E+ + 
Sbjct: 97  LL-------QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD-RSILHVAAKHGNWNIV 309
                + +G TPLH+A  +   ++++LL +   D +   + +  R+ LH+A +    +++
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVL 208

Query: 310 SFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
             +L     +           G TPL  A +  +  +   L  H         
Sbjct: 209 ELLL-----KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDG 255

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.5 bits (228), Expect = 4e-21
 Identities = 43/277 (15%), Positives = 78/277 (28%), Gaps = 64/277 (23%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP 180
           +G+T LH AV +QH+  +  L+   +                 +D + +           
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHE-------------YLDLQNDL---------- 44

Query: 181 ESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKM 240
                       T LH   +       V+ L      +   +      LH A        
Sbjct: 45  ----------GQTALHLAAILGEAST-VEKLYAAGAGVLVAERGGHTALHLACRVRAHTC 93

Query: 241 AQRLLE------------ESKQLAYKRDCNGETPLHLAA-ENGKLKVLKLLINKYPDAIE 287
           A  LL+               Q           P  + +  N + +      +     +E
Sbjct: 94  ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LE 152

Query: 288 IRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRN-GNTPLHLAAMGLHSDVV 345
             +    + LHVA  H +  +V        +    +N  +   G TPLHLA     + V+
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGAD----LNKPEPTCGRTPLHLAVEAQAASVL 208

Query: 346 FTLSRHKSVNIRAKNRS--------ARNNIALEIAEI 374
             L +    +  A+                   +A +
Sbjct: 209 ELLLKAG-ADPTARMYGGRTPLGSALLRP-NPILARL 243

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 79.5 bits (197), Expect = 6e-17
 Identities = 35/257 (13%), Positives = 74/257 (28%), Gaps = 62/257 (24%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQ---QNFIALRLHYSLLRQKNLMD-ETPLHIAARIGNR 89
           G+T LH+A R R       +L+        A   + +  +         P  + ++    
Sbjct: 78  GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137

Query: 90  AIVSEIVKYVPA-VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148
                  +     +                + +G+TPLH AV ++   ++R+L +  +  
Sbjct: 138 NEEEPRDEDWRLQLEA-------------ENYDGHTPLHVAVIHKDAEMVRLLRDAGA-- 182

Query: 149 SSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMV 208
                          ++                           T LH  V  Q   + +
Sbjct: 183 --------------DLNKPEPTCGR-------------------TPLHLAVEAQAASV-L 208

Query: 209 KIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHL 265
           ++L   G +        +  R PL  A    N  +A+ L         +   +  +P   
Sbjct: 209 ELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSS 264

Query: 266 AAENGKLKVLKLLINKY 282
           +  +          ++Y
Sbjct: 265 SGSDSDSDNRDEG-DEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
                    + LH+A  H +   + F+L        ++L +  G T LHLAA+   +  V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 346 FTLSRHK-SVNIRAKNRS------ARNNIALEIAEI 374
             L      V +  +          R   A   A +
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVR-AHTCACV 96

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 34/119 (28%)

Query: 33  GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARI 86
            G T LH+AV  +   V+                 LL+       +     TPL  A   
Sbjct: 191 CGRTPLHLAVEAQAASVLEL---------------LLKAGADPTARMYGGRTPLGSALLR 235

Query: 87  GNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145
            N  +   +  +                      +  +P  ++ ++          E D
Sbjct: 236 PNPILARLLRAHGAPEP-------------EDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (323), Expect = 9e-34
 Identities = 62/348 (17%), Positives = 123/348 (35%), Gaps = 60/348 (17%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
               L  A R  N++ +  +L   N              +    TPLH+AA      IV 
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLN--------VNCHASDGRKSTPLHLAAGYNRVRIVQ 75

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            ++++   V+              +D  G  PLHNA +  H  V  +L++      + +N
Sbjct: 76  LLLQHGADVH-------------AKDKGGLVPLHNACSYGHYEVTELLLKHG----ACVN 118

Query: 154 ---KAYQTPLSIAIDARLNDSACFIIDK--SPESLNTTRLPDELTLLHFVVMRQNYDIMV 208
                  TPL  A      +    ++     P  +N        + +      +  + + 
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC----HGKSAVDMAPTPELRERL- 173

Query: 209 KILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE 268
                             + L  AA   ++   ++ L   + + +K+  + ET LH A  
Sbjct: 174 ------TYEFK------GHSLLQAAREADLAKVKKTL-ALEIINFKQPQSHETALHCAVA 220

Query: 269 NG---KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINL 324
           +    + +V +LL+ K  + +  ++    + LHVAA+  + +++        +    +N 
Sbjct: 221 SLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK----MNA 275

Query: 325 VDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIA 372
           +D  G T LH AA+  H      L  +   +    +       A ++ 
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQ--GFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  123 bits (311), Expect = 5e-32
 Identities = 64/348 (18%), Positives = 120/348 (34%), Gaps = 72/348 (20%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQ---QNFIALRLHYSLLRQKNLMDETPLHIAARIGNRA 90
            +T LH+A  +   ++++ +L+     +             K+     PLH A   G+  
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHGADVH------------AKDKGGLVPLHNACSYGHYE 105

Query: 91  IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
           +   ++K+   VN               D+   TPLH A +     V  +L+   + P+ 
Sbjct: 106 VTELLLKHGACVN-------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152

Query: 151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKI 210
            +N   ++ + +A    L +   +                  +LL       +   + K 
Sbjct: 153 -VNCHGKSAVDMAPTPELRERLTYEFKGH-------------SLLQ-AAREADLAKVKKT 197

Query: 211 LGTNKELIDRLDWHQRNPLHYAAASG---NVKMAQRLLE-----ESKQLAYKRDCNGETP 262
           L        +        LH A AS      ++A+ LL        K      + +  TP
Sbjct: 198 LALEIINFKQ-PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK------NKDFMTP 250

Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN-- 320
           LH+AAE     V+++L       +   D+  ++ LH AA  G+      +L         
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLL-----SYGS 304

Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIA 368
             +++   G T   +     +  V   LS  +S  +R  +   R   A
Sbjct: 305 DPSIISLQGFTAAQMG----NEAVQQILS--ESTPMRTSDVDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  110 bits (278), Expect = 2e-27
 Identities = 57/340 (16%), Positives = 106/340 (31%), Gaps = 98/340 (28%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEI-VKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV 130
                +  L  AAR GN   +  +        +               D   +TPLH A 
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA-------------SDGRKSTPLHLAA 66

Query: 131 TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPD 190
                R++++L++      + ++                       DK            
Sbjct: 67  GYNRVRIVQLLLQHG----ADVHAK---------------------DK-----------G 90

Query: 191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQ 250
            L  LH      +Y++  ++L  +   ++ +D  Q  PLH AA+   V++   LL     
Sbjct: 91  GLVPLHNACSYGHYEV-TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS---H 146

Query: 251 LA--YKRDCNGETPLHLAAENGKLKVLKLLINKYPD--------------------AIEI 288
            A     +C+G++ + +A      + L      +                          
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206

Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPLHLAAMGLHS 342
           +  S  + LH A    +             E L+      N  +++  TPLH+AA   H+
Sbjct: 207 QPQSHETALHCAVASLHPKRKQV------AELLLRKGANVNEKNKDFMTPLHVAAERAHN 260

Query: 343 DVVFTLSRHKSVNIRAKNRS--------ARNNIALEIAEI 374
           DV+  L +H    + A +          A     L+   +
Sbjct: 261 DVMEVLHKHG-AKMNALDSLGQTALHRAALAG-HLQTCRL 298

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  105 bits (265), Expect = 1e-25
 Identities = 56/317 (17%), Positives = 100/317 (31%), Gaps = 73/317 (23%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
           G   LH A  + + +V                  LL+        +L   TPLH AA   
Sbjct: 91  GLVPLHNACSYGHYEVTEL---------------LLKHGACVNAMDLWQFTPLHEAASKN 135

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147
              + S ++ +                    +  G + +  A T + +  +    +    
Sbjct: 136 RVEVCSLLLSHGADPTL-------------VNCHGKSAVDMAPTPELRERLTYEFKG--- 179

Query: 148 PSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDI- 206
                     + L  A +A L      +     E +N  +     T LH  V   +    
Sbjct: 180 ---------HSLLQAAREADLAKVKKTLAL---EIINFKQPQSHETALHCAVASLHPKRK 227

Query: 207 -MVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAY--KRDCNGE 260
            + ++L   G N   ++  +     PLH AA   +  + + L +     A     D  G+
Sbjct: 228 QVAELLLRKGAN---VNEKNKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLGQ 281

Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
           T LH AA  G L+  +LL++   D   I      +   +  +      V  IL       
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGNE-----AVQQIL-----SE 330

Query: 321 LINLVDRNGNTPLHLAA 337
              +   + +  L  A+
Sbjct: 331 STPMRTSDVDYRLLEAS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.9 bits (224), Expect = 3e-20
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKL 277
                 ++++ L  AA SGN +    LL       +  D    TPLHLAA   ++++++L
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 278 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLA 336
           L+    D +  +D      LH A  +G++ +    +         +N +D    TPLH A
Sbjct: 77  LLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC----VNAMDLWQFTPLHEA 131

Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIA 372
           A     +V   L  H   +    N       A+++A
Sbjct: 132 ASKNRVEVCSLLLSHG-ADPTLVNCH--GKSAVDMA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.0 bits (214), Expect = 7e-19
 Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 66/283 (23%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQ---QNFIALRLHYSLLRQKNLMDETPLHIAARIGNRA 90
             T LH A      +V   +L                     N   ++ + +A     R 
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPT------------LVNCHGKSAVDMAPTPELR- 170

Query: 91  IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
              E + Y                    + +G++ L  A      +V + L  +      
Sbjct: 171 ---ERLTY--------------------EFKGHSLLQAAREADLAKVKKTLALEIINFKQ 207

Query: 151 YINKAYQTPLSIAIDARLNDS---ACFIIDK--SPESLNTTRLPDELTLLHFVVMRQNYD 205
              ++++T L  A+ +        A  ++ K  +    N     D +T LH    R + D
Sbjct: 208 --PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK----DFMTPLHVAAERAHND 261

Query: 206 IMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
           + +++L   G     ++ LD   +  LH AA +G+++  + LL      +      G T 
Sbjct: 262 V-MEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS-IISLQGFTA 316

Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 305
             +  E  +      ++++    +   D   R  L  A+K G+
Sbjct: 317 AQMGNEAVQQ-----ILSESTP-MRTSDVDYR--LLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.9 bits (180), Expect = 2e-14
 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 239 KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILH 298
           K A  L + S +     +   +  L  A    + K++ LL     +     D    + LH
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLH 63

Query: 299 VAAKHGNWNIVSFILKSPEMENL--INLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVN 355
           +AA +    IV  +L     ++   ++  D+ G  PLH A    H +V   L +H   VN
Sbjct: 64  LAAGYNRVRIVQLLL-----QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118

Query: 356 IRAKNR------SARNNIALEIAEI 374
                +      +A  N  +E+  +
Sbjct: 119 AMDLWQFTPLHEAASKN-RVEVCSL 142

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  123 bits (312), Expect = 1e-32
 Identities = 61/339 (17%), Positives = 114/339 (33%), Gaps = 72/339 (21%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQ---NFIALRLHYSLLRQKNLMDETPLHIAARIGNRA 90
            N +L  AV+  +  +++++L      NF           Q+     TPLH A ++    
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNF-----------QEEEGGWTPLHNAVQMSRED 53

Query: 91  IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
           IV  ++++                   R   G TP   A      +++++ + K     +
Sbjct: 54  IVELLLRHGADPVL-------------RKKNGATPFLLAAIAGSVKLLKLFLSKG----A 96

Query: 151 YINKAY---QTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIM 207
            +N+      T    A  A                +   +      L             
Sbjct: 97  DVNECDFYGFTAFMEA--AVYG------------KVKALKF-----LY-------KRGAN 130

Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAY--KRDCNGETPLHL 265
           V +    KE  +RL       L  AA  G+V++ + LL   +  A     D  G   L  
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIH 188

Query: 266 AAENGKLK----VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 321
           A  +        +  LL++   D + +R    ++ L +A +  +  +V  +L+   +E  
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-- 245

Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
           IN  D +G T L LA       +   L +    +    +
Sbjct: 246 INDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (305), Expect = 1e-31
 Identities = 58/284 (20%), Positives = 102/284 (35%), Gaps = 42/284 (14%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
            +E N  L  AV N+   +++ L+E  +  +    +   TPL  A+     D    ++  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 179 --SPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAA 233
              P         +  T      +  +  + +K+    G +    D   +        AA
Sbjct: 62  GADPVLRKK----NGATPFLLAAIAGSVKL-LKLFLSKGADVNECDFYGF---TAFMEAA 113

Query: 234 ASGNVKMAQRLLE---------ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
             G VK  + L +         ++K+   +    G T L  AAE G ++VLK+L+++   
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPLHLAAM 338
            +   DN  R+ L  A    + + V  I        L+      N+    G TPL LA  
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAI-----THLLLDHGADVNVRGERGKTPLILAVE 228

Query: 339 GLHSDVVFTLSRHKSVNIRAKNRS--------ARNNIALEIAEI 374
             H  +V  L   + + I   +                 +IAE+
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK-LKKIAEL 271

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 95.2 bits (238), Expect = 2e-22
 Identities = 51/301 (16%), Positives = 93/301 (30%), Gaps = 83/301 (27%)

Query: 33  GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARI 86
           GG T LH AV+   + ++                 LLR       +     TP  +AA  
Sbjct: 38  GGWTPLHNAVQMSREDIVEL---------------LLRHGADPVLRKKNGATPFLLAAIA 82

Query: 87  GNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS 146
           G+  ++   +     VN+              D  G T    A      + ++ L ++  
Sbjct: 83  GSVKLLKLFLSKGADVNE-------------CDFYGFTAFMEAAVYGKVKALKFLYKRG- 128

Query: 147 VPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDI 206
                            ++ R                         T L     + + ++
Sbjct: 129 ---------------ANVNLRRKTKED----------QERLRKGGATALMDAAEKGHVEV 163

Query: 207 MVKIL----GTNKELIDRLDWHQRNPLHYAAASGNVK----MAQRLLE-----ESKQLAY 253
            +KIL    G +    D +     N L +A  S +      +   LL+       +    
Sbjct: 164 -LKILLDEMGADVNACDNMGR---NALIHALLSSDDSDVEAITHLLLDHGADVNVR---- 215

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
                G+TPL LA E   L +++ L+ +    I   D+  ++ L +A +     I   + 
Sbjct: 216 --GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 314 K 314
           K
Sbjct: 274 K 274

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  121 bits (307), Expect = 2e-32
 Identities = 57/302 (18%), Positives = 94/302 (31%), Gaps = 77/302 (25%)

Query: 71  QKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV 130
             +      +  A + G      E+V+    V Q              D E  T LH A 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ-------------PDKENVTLLHWAA 50

Query: 131 TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPD 190
            N    +++  + K ++          TPL  A                           
Sbjct: 51  INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT-------------------------- 84

Query: 191 ELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE- 246
                     RQ +  MV  L   G +  LID       + +H AA  G+  +   L+  
Sbjct: 85  ----------RQGHLSMVVQLMKYGADPSLIDGEGC---SCIHLAAQFGHTSIVAYLIAK 131

Query: 247 ----ESKQLAYKRDCNGETPLHLAAENG-KLKVLKLLINKYPDAIEIRDNSDRSI-LHVA 300
               +        D NG TPL  AA     +   +LL+      + + D   ++  LH A
Sbjct: 132 GQDVDMM------DQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWA 184

Query: 301 AKHGNWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA 358
              GN  ++S +L     E    ++  +  G + L LA    +  ++  L   +      
Sbjct: 185 VLAGNTTVISLLL-----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR-QAKGY 238

Query: 359 KN 360
            N
Sbjct: 239 DN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 91.7 bits (229), Expect = 1e-21
 Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKL 277
           +  +D +    +  A   G  +  + L+E    +  + D    T LH AA N ++ ++K 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKY 60

Query: 278 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLA 336
            I+K     ++  + + + LH A + G+ ++V   +    +     +L+D  G + +HLA
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD----PSLIDGEGCSCIHLA 116

Query: 337 AMGLHSDVV-FTLSRHKSVNIRAKN------RSARNNIALEIAEI 374
           A   H+ +V + +++ + V++  +N       +A    +++   +
Sbjct: 117 AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 91.3 bits (228), Expect = 2e-21
 Identities = 51/289 (17%), Positives = 99/289 (34%), Gaps = 74/289 (25%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
               +  A ++   +  RE++              +RQ +  + T LH AA         
Sbjct: 9   STWDIVKATQYGIYERCRELVE---------AGYDVRQPDKENVTLLHWAAINNRI---- 55

Query: 94  EIVKY---VPA-VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149
           ++VKY     A V+Q G                +TPLH A    H  ++  L++      
Sbjct: 56  DLVKYYISKGAIVDQLG------------GDLNSTPLHWATRQGHLSMVVQLMKY----- 98

Query: 150 SYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVK 209
                           A  +     +ID            +  + +H      +  I V 
Sbjct: 99  ---------------GADPS-----LIDG-----------EGCSCIHLAAQFGHTSI-VA 126

Query: 210 IL---GTNKELIDRLDWHQRNPLHYAAASGNVK-MAQRLLEESKQLAYKRDCNGETPLHL 265
            L   G + +++D+       PL +AA   +     + LL  +  +      +  T LH 
Sbjct: 127 YLIAKGQDVDMMDQNGM---TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183

Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           A   G   V+ LL+    + ++ ++    S L +A +  N  +++ + +
Sbjct: 184 AVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 85.2 bits (212), Expect = 3e-19
 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 79/259 (30%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL--------RQKNLMDETPLHIAAR 85
             T+LH A       +++                          +    ++ TPLH A R
Sbjct: 42  NVTLLHWAAINNRIDLVK----------------YYISKGAIVDQLGGDLNSTPLHWATR 85

Query: 86  IGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145
            G+ ++V +++KY    +             + D EG + +H A    H  ++  L+ K 
Sbjct: 86  QGHLSMVVQLMKYGADPS-------------LIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132

Query: 146 SVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYD 205
                 ++                       D+           + +T L +   R +  
Sbjct: 133 ----QDVDMM---------------------DQ-----------NGMTPLMWAAYRTHSV 156

Query: 206 IMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
              ++L     +  L D   +H+   LH+A  +GN  +   LLE    +   ++  GE+ 
Sbjct: 157 DPTRLLLTFNVSVNLGD--KYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESA 213

Query: 263 LHLAAENGKLKVLKLLINK 281
           L LA +   + ++  L   
Sbjct: 214 LDLAKQRKNVWMINHLQEA 232

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (315), Expect = 2e-32
 Identities = 49/349 (14%), Positives = 95/349 (27%), Gaps = 68/349 (19%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
               +H+A R      +R                L+        +N    T LH+A + G
Sbjct: 20  NMEKIHVAARKGQTDEVR---------------RLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147
                  +       +                  G  P+H AV      ++  LV     
Sbjct: 65  CVDTAKYLASVGEVHS---------------LWHGQKPIHLAVMANKTDLVVALV----- 104

Query: 148 PSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDI- 206
                 +  Q P S+  +    +    + +      +        T LH+ V      + 
Sbjct: 105 --EGAKERGQMPESLLNECDERE----VNEIGSHVKHC----KGQTALHWCVGLGPEYLE 154

Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA----YKRDCNGETP 262
           M+KIL          D     PL  A    N +    +++     +       +  G + 
Sbjct: 155 MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH 214

Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL- 321
           LH A       V    +    D + + DN     L+++ +     +   +L+  ++  + 
Sbjct: 215 LHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273

Query: 322 ---------INLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKN 360
                    +          +  AA     +V+  L      V      
Sbjct: 274 ACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNT 322

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (312), Expect = 5e-32
 Identities = 47/370 (12%), Positives = 98/370 (26%), Gaps = 88/370 (23%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ---KNLMD-ETPLHIAARIGNR 89
           G T LH+A +F      +                L       +L   + P+H+A      
Sbjct: 53  GCTALHLACKFGCVDTAKY---------------LASVGEVHSLWHGQKPIHLAVMANKT 97

Query: 90  AIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149
               ++V                 L       G  P         + V  I         
Sbjct: 98  ----DLVVA---------------LVEGAKERGQMPESLLNECDEREVNEIGSHVK---- 134

Query: 150 SYINKAYQTPLSIAIDARLN--DSACFIIDK--SPESLNTTRLPDELTLLHFVVMRQNYD 205
              +   QT L   +       +    ++    SP + +      + T L   +  +N +
Sbjct: 135 ---HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK----ADETPLMRAMEFRNRE 187

Query: 206 IMVKILGTNKEL-----IDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKQLAYKR 255
             + ++           +D  +    + LH+A       +A R +E       +      
Sbjct: 188 A-LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME------ 240

Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDA------------IEIRDNSDRSILHVAAKH 303
           D     PL+L+     + + K L+ K                +          +  AA  
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 363
               ++  + +     + +      G              V        S  +R ++RS 
Sbjct: 301 SKQEVLQLLQEK---LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP-SAPVRTRSRSR 356

Query: 364 RNNIALEIAE 373
               +  +++
Sbjct: 357 AR--SSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  120 bits (303), Expect = 9e-31
 Identities = 42/311 (13%), Positives = 94/311 (30%), Gaps = 82/311 (26%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
              +H+AAR G    V  +++   +                ++  G T LH A       
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSPTI-------------QNRFGCTALHLACKFGCVD 67

Query: 137 VIRILVEKDSVPSSYINKAY-QTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLL 195
             + L     V     +  + Q P+ +A+                               
Sbjct: 68  TAKYLASVGEV----HSLWHGQKPIHLAV------------------------------- 92

Query: 196 HFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR 255
                  N   +V        L++      + P          ++ +            +
Sbjct: 93  -----MANKTDLVVA------LVEGAKERGQMPESLLNECDEREVNEIGSHV-------K 134

Query: 256 DCNGETPLHLAAENGK--LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
            C G+T LH     G   L+++K+L+         +D +D + L  A +  N   +  ++
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMM 193

Query: 314 KSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--------A 363
            +   ++   ++  ++ GN+ LH A +    DV         +++  ++           
Sbjct: 194 DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSV 252

Query: 364 RNNIALEIAEI 374
           R    + + + 
Sbjct: 253 RAA-MVLLTKE 262

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =   99 bits (250), Expect = 1e-23
 Identities = 39/275 (14%), Positives = 72/275 (26%), Gaps = 79/275 (28%)

Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIID 177
            D E    +H A        +R L+E                               I +
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIET--------------------GVSPT-----IQN 50

Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAA 234
           +              T LH        D   K L   G          WH + P+H A  
Sbjct: 51  R-----------FGCTALHLACKFGCVDT-AKYLASVGEVHS-----LWHGQKPIHLAVM 93

Query: 235 SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDR 294
           +    +   L+E            G+ P  L  E  + +V ++  +       ++    +
Sbjct: 94  ANKTDLVVALVE-------GAKERGQMPESLLNECDEREVNEIGSH-------VKHCKGQ 139

Query: 295 SILHVAAKHGNWN--IVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL--- 348
           + LH     G     ++   +             D+   TPL  A    + + +  +   
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGAS----PTAKDKADETPLMRAMEFRNREALDLMMDT 195

Query: 349 -SRHKSVNIRAKNRS--------ARNNIALEIAEI 374
                S+ +   N+            N   ++A  
Sbjct: 196 VPSKSSLRLDYANKQGNSHLHWAILIN-WEDVAMR 229

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.4 bits (233), Expect = 3e-21
 Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 35/169 (20%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKL 272
             + D      +H AA  G     +RL+E       +      +  G T LHLA + G +
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ------NRFGCTALHLACKFGCV 66

Query: 273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTP 332
              K L +             +  +H+A      ++V           L+      G  P
Sbjct: 67  DTAKYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVA---------LVEGAKERGQMP 114

Query: 333 LHLAAMGLHSDVVFTLSRHKSVNIRAKNR-------SARNNIALEIAEI 374
             L       +V          +++                  LE+ +I
Sbjct: 115 ESLLNECDEREVN-----EIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  121 bits (305), Expect = 4e-32
 Identities = 54/293 (18%), Positives = 97/293 (33%), Gaps = 64/293 (21%)

Query: 68  LLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPA----VNQAGPLPVLESLFRMRDIEGN 123
           +  + +   +TPLHIA   GN   V  +V         ++             + +    
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQ 47

Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESL 183
           TPLH AV      V+R+LV                       A         +D+     
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAG--------------------ASPM-----ALDR----- 77

Query: 184 NTTRLPDELTLLHFVVMRQNYDIMVKIL----GTNKELIDRLDWHQRNPLHYAAASGNVK 239
                    T  H           ++ L          ++  ++     LH A  +   +
Sbjct: 78  ------HGQTAAHLAC-EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130

Query: 240 MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHV 299
             Q LLE    +      +G +PL  A EN  L +++LL+    + +  +  S  S LH 
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHS 189

Query: 300 AAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           A+  G   +V   +    +     +L + + +TPL +A      D++   +  
Sbjct: 190 ASGRGLLPLVRTLVRSGAD----SSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  109 bits (274), Expect = 8e-28
 Identities = 53/288 (18%), Positives = 104/288 (36%), Gaps = 68/288 (23%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G+T LH+AV   N   +  ++        +     L   N + +TPLH+A      ++V 
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNL-----FQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            +V    +                 D  G T  H A  ++    +R L++  +  +  + 
Sbjct: 64  LLVTAGASPMA-------------LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE 110

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL-- 211
                                  +            D LT LH  V  +  +  V++L  
Sbjct: 111 AR---------------------NY-----------DGLTALHVAVNTECQET-VQLLLE 137

Query: 212 -GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHL 265
            G + + +D      R+PL +A  + ++ M Q LL+      ++        +G + LH 
Sbjct: 138 RGADIDAVDIKS--GRSPLIHAVENNSLSMVQLLLQHGANVNAQ------MYSGSSALHS 189

Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
           A+  G L +++ L+    D   +++  + + L VA      +I+    
Sbjct: 190 ASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.7 bits (229), Expect = 2e-21
 Identities = 46/207 (22%), Positives = 75/207 (36%), Gaps = 35/207 (16%)

Query: 190 DELTLLHFVVMRQNYDIMVKIL-------GTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
           D  T LH  V++ N    V  L       G   ++ + L      PLH A  +    + +
Sbjct: 8   DGDTPLHIAVVQGNLPA-VHRLVNLFQQGGRELDIYNNLRQ---TPLHLAVITTLPSVVR 63

Query: 243 RLLEESKQLAY--KRDCNGETPLHLAAENGKLKVLKLLINK---YPDAIEIRDNSDRSIL 297
            L+      A     D +G+T  HLA E+     L+ L++        +E R+    + L
Sbjct: 64  LLVTAG---ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 298 HVAAKHGNWNIVSF-ILKSPEMENLINLVDRN-GNTPLHLAAMGLHSDVVFTLSRHKSVN 355
           HVA        V   + +  +    I+ VD   G +PL  A       +V  L +H   N
Sbjct: 121 HVAVNTECQETVQLLLERGAD----IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-AN 175

Query: 356 IRAKNRS--------ARNNIALEIAEI 374
           + A+  S        +     L +   
Sbjct: 176 VNAQMYSGSSALHSASGRG-LLPLVRT 201

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.5 bits (205), Expect = 3e-18
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 20/139 (14%)

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA---IEIRDNSDRSILHVAAKHGNWN 307
           +A + D +G+TPLH+A   G L  +  L+N +      ++I +N  ++ LH+A      +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 308 IVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH---KSVNIRAKNRS- 362
           +V   +            +DR+G T  HLA        +  L       ++++ A+N   
Sbjct: 61  VVRLLVTAGAS----PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 363 -------ARNNIALEIAEI 374
                         E  ++
Sbjct: 117 LTALHVAVNTEC-QETVQL 134

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 62/217 (28%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G T  H+A   R+   +R +L       L L       +N    T LH+A     +  V 
Sbjct: 79  GQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-----ARNYDGLTALHVAVNTECQETVQ 133

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIE-GNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
            +++    ++               DI+ G +PL +AV N    ++++L++         
Sbjct: 134 LLLERGADIDA-------------VDIKSGRSPLIHAVENNSLSMVQLLLQH-------- 172

Query: 153 NKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL- 211
                        A +N                       + LH    R    + V+ L 
Sbjct: 173 ------------GANVN-----AQMY-----------SGSSALHSASGRGLLPL-VRTLV 203

Query: 212 --GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
             G +       + H   PL  A +   + + +    
Sbjct: 204 RSGAD---SSLKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 30/115 (26%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQ----NFIALRLHYSLLRQKNLMDETPLHIAARIGNR 89
           G + L  AV   +  ++ ++L Q     N             +     + LH A+  G  
Sbjct: 150 GRSPLIHAVENNSLSMV-QLLLQHGANVN------------AQMYSGSSALHSASGRGLL 196

Query: 90  AIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
            +V  +V+     +              ++   +TPL  A + +   ++R    +
Sbjct: 197 PLVRTLVRSGADSSL-------------KNCHNDTPLMVARSRRVIDILRGKATR 238

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  117 bits (296), Expect = 5e-31
 Identities = 56/279 (20%), Positives = 97/279 (34%), Gaps = 66/279 (23%)

Query: 75  MDETPLHIAARIGNRAIVSEIVKYVPA-VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ 133
           M   PLH A        V E++   P+ + Q             +D +G  PLH +V+ Q
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQ-------------KDQDGRIPLHWSVSFQ 47

Query: 134 HKRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191
              +   L+ K  +     Y + +  TP  IA    +             +L   +    
Sbjct: 48  AHEITSFLLSKMENVNLDDYPDDSGWTPFHIA--CSVG------------NLEVVKS--- 90

Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE----- 246
             L              + L  +   ++++       LH A      +++Q L+E     
Sbjct: 91  --LYD------------RPLKPD---LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133

Query: 247 ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW 306
             K      D   + PLH AA  G LK+++LL      A+  +D    + L  A   G+ 
Sbjct: 134 RIK------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187

Query: 307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
           +    +++    E   +LVD  G     +A    +  V 
Sbjct: 188 DAAVLLVEKYGAE--YDLVDNKGAKAEDVAL---NEQVK 221

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  114 bits (288), Expect = 8e-30
 Identities = 56/257 (21%), Positives = 89/257 (34%), Gaps = 49/257 (19%)

Query: 122 GNTPLHNAVTNQHKR-VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP 180
            N PLH A        V  +L  K S     + +                      D+  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPS----LLLQK---------------------DQ-- 34

Query: 181 ESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGN 237
                    D    LH+ V  Q ++I    L     N  L D  D     P H A + GN
Sbjct: 35  ---------DGRIPLHWSVSFQAHEI-TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN 84

Query: 238 VKMAQRLLE-ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSI 296
           +++ + L +   K    K    G T LHLA      +V + LI      + I+D  ++  
Sbjct: 85  LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIP 143

Query: 297 LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVN 355
           LH AA  G+  ++  +    +  + +N  D+ G TPL  A    H D     + ++    
Sbjct: 144 LHRAASVGSLKLIELLCGLGK--SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-AE 200

Query: 356 IRAKNRSARNNIALEIA 372
               +       A ++A
Sbjct: 201 YDLVDNK--GAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  105 bits (265), Expect = 1e-26
 Identities = 62/281 (22%), Positives = 97/281 (34%), Gaps = 56/281 (19%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
            N  LH A        ++E+L  +         SLL QK+     PLH +       I S
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKP--------SLLLQKDQDGRIPLHWSVSFQAHEITS 53

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            ++  +  VN               D  G TP H A +  +  V++ L ++   P   +N
Sbjct: 54  FLLSKMENVNLDD----------YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD--LN 101

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGT 213
           K                                     +T LH  V ++ +++  + L  
Sbjct: 102 KI---------------------TN-----------QGVTCLHLAVGKKWFEV-SQFLIE 128

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK 273
           N   +   D   + PLH AA+ G++K+ + L    K     +D  G TPL  A   G   
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188

Query: 274 VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
              LL+ KY    ++ DN       VA       +  F L 
Sbjct: 189 AAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 20/139 (14%)

Query: 25  NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAA 84
           N+       G T  H+A    N +V+ + L  +           L +      T LH+A 
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVV-KSLYDRPLKP------DLNKITNQGVTCLHLAV 115

Query: 85  RIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
                 +   +++   +V               +D     PLH A +    ++I +L   
Sbjct: 116 GKKWFEVSQFLIENGASVRI-------------KDKFNQIPLHRAASVGSLKLIELLCGL 162

Query: 145 DSVPSSYINKAYQTPLSIA 163
                ++ +K   TPL  A
Sbjct: 163 GKSAVNWQDKQGWTPLFHA 181

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  117 bits (296), Expect = 8e-30
 Identities = 55/342 (16%), Positives = 108/342 (31%), Gaps = 56/342 (16%)

Query: 33  GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIV 92
                            + +            +  +  +        LH  A  G+ AI 
Sbjct: 60  YSLYPNPQGYG-NGNDFLGDFNHT--------NLQIPTEPEPESPIKLHTEAA-GSYAIT 109

Query: 93  SEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
             I +    +                     T LH   +N        L+  ++      
Sbjct: 110 EPITRESVNIID--------------PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 155

Query: 153 -------NKAYQTPLSIAIDARLNDSACFIIDK--SPESLNTTRLPDELTLLHFVVMRQN 203
                  +    TPL +A+ AR      +++     P   N      E + LH     ++
Sbjct: 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK----SERSALHQAAANRD 211

Query: 204 YDIMVKILGTNKEL---IDRLDWHQRNPLHYAAASGN---VKMAQRLLE-------ESKQ 250
           + + +  +  + +L   I+ LD +    L   A +     V  A+ L+E       +   
Sbjct: 212 FGM-MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVS 310
                   G T LH AA+   + ++K L+ +     + +D   ++ + +AA+ G   +V 
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 330

Query: 311 F-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           + I +       +  VD   +T   LA    H ++V    R 
Sbjct: 331 YLIQQGAS----VEAVDATDHTARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  111 bits (280), Expect = 1e-27
 Identities = 43/328 (13%), Positives = 88/328 (26%), Gaps = 75/328 (22%)

Query: 72  KNLMD---ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHN 128
           +N +      P       GN  +       +    +              + E    LH 
Sbjct: 54  RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-------------PEPESPIKLHT 100

Query: 129 AVTNQHKRVIRILVEKDSVPSSYINKAY--QTPLSIAIDARLNDSACFIIDKSPESLNTT 186
                   +   +  +       I      +T L         + +  +I    +     
Sbjct: 101 EAAG-SYAITEPITRESV----NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA- 154

Query: 187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                                    G +   +D  +     PL  A  +   ++   L++
Sbjct: 155 ------------------------AGADVNAMDCDEN---TPLMLAVLARRRRLVAYLMK 187

Query: 247 ESKQLAYK--RDCNGETPLHLAAENGKLKVLKLLINKYPDA--IEIRDNSDRSILHVAAK 302
                A     + +  + LH AA N    ++  ++N       IE  D +  + L + A 
Sbjct: 188 AG---ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244

Query: 303 HGNWNIVSF--ILKS------PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354
           +   + V+   +L         +     +     G T LH AA   +  +V  L   K  
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304

Query: 355 NIRAKNRS--------ARNNIALEIAEI 374
           N   ++          A+    +E+   
Sbjct: 305 NKDKQDEDGKTPIMLAAQEG-RIEVVMY 331

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  110 bits (279), Expect = 2e-28
 Identities = 49/288 (17%), Positives = 102/288 (35%), Gaps = 68/288 (23%)

Query: 71  QKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV 130
            ++    +PLH AA  G+  I   +V+    ++                 +  TPL  A 
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-------------SEDQRTPLMEAA 52

Query: 131 TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPD 190
            N H   ++ L++  +     ++                       D            +
Sbjct: 53  ENNHLEAVKYLIKAGA----LVDPK---------------------DA-----------E 76

Query: 191 ELTLLHFVVMRQNYDIMVKIL-GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
             T LH    + +Y++ V+ L    +  ++  D     P+ +A    +V + + LL    
Sbjct: 77  GSTCLHLAAKKGHYEV-VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135

Query: 247 --ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
               +      D      LH AA +G + + ++L+    D +   +    S LH+AA+  
Sbjct: 136 DINIR------DNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAAREN 188

Query: 305 NWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            ++ V   + +  +    + L ++ G TPL  A++         +S+ 
Sbjct: 189 RYDCVVLFLSRDSD----VTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 98.6 bits (247), Expect = 4e-24
 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 23/197 (11%)

Query: 190 DELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           ++ + LH      + DI   +L   G N   ID     QR PL  AA + +++  + L++
Sbjct: 10  NKRSPLHAAAEAGHVDI-CHMLVQAGAN---IDTCSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 247 ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW 306
               +   +D  G T LHLAA+ G  +V++ L++     +  +D+   + +  A ++ + 
Sbjct: 66  AGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 307 NIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--- 362
           ++V   + K  +    IN+ D   N  LH AA     D+   L   K  ++ A N     
Sbjct: 125 DLVKLLLSKGSD----INIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDS 179

Query: 363 -----ARNNIALEIAEI 374
                AR N   +   +
Sbjct: 180 PLHIAAREN-RYDCVVL 195

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 97.1 bits (243), Expect = 2e-23
 Identities = 53/290 (18%), Positives = 102/290 (35%), Gaps = 78/290 (26%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
             + LH A    +  +                  L++        +    TPL  AA   
Sbjct: 11  KRSPLHAAAEAGHVDICH---------------MLVQAGANIDTCSEDQRTPLMEAAENN 55

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147
           +   V  ++K    V+              +D EG+T LH A    H  V++ L+    +
Sbjct: 56  HLEAVKYLIKAGALVDP-------------KDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102

Query: 148 PSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIM 207
               +N                       D               T + +    ++ D+ 
Sbjct: 103 D---VNCQ---------------------DD-----------GGWTPMIWATEYKHVDL- 126

Query: 208 VKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLH 264
           VK+L   G++  + D  +      LH+AA SG V +A+ LL     L +  + +G++PLH
Sbjct: 127 VKLLLSKGSDINIRDNEEN---ICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLH 182

Query: 265 LAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           +AA   +   + L +++  D + +++    + L  A+ +        + K
Sbjct: 183 IAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 96.3 bits (241), Expect = 3e-23
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 22/169 (13%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKL 272
                 ++R+PLH AA +G+V +   L++     ++         +  TPL  AAEN  L
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC------SEDQRTPLMEAAENNHL 57

Query: 273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTP 332
           + +K LI      ++ +D    + LH+AAK G++ +V ++L + +M+  +N  D  G TP
Sbjct: 58  EAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTP 114

Query: 333 LHLAAMGLHSDVV-FTLSRHKSVNIRAKN------RSARNNIALEIAEI 374
           +  A    H D+V   LS+   +NIR          +A +   ++IAEI
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC-VDIAEI 162

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.4 bits (210), Expect = 6e-19
 Identities = 50/260 (19%), Positives = 88/260 (33%), Gaps = 75/260 (28%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
             T L  A    + + ++ +++           +L+  K+    T LH+AA+ G+     
Sbjct: 44  QRTPLMEAAENNHLEAVKYLIK---------AGALVDPKDAEGSTCLHLAAKKGHY---- 90

Query: 94  EIVKY-----VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148
           E+V+Y        VN              +D  G TP+  A   +H  ++++L+ K    
Sbjct: 91  EVVQYLLSNGQMDVNC-------------QDDGGWTPMIWATEYKHVDLVKLLLSKG--- 134

Query: 149 SSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMV 208
            S IN                       D            +E   LH+       DI  
Sbjct: 135 -SDINIR---------------------DN-----------EENICLHWAAFSGCVDI-A 160

Query: 209 KIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHL 265
           +IL     +   ++    H  +PLH AA           L     +   ++  GETPL  
Sbjct: 161 EILLAAKCDLHAVNI---HGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQC 216

Query: 266 AAENGKLKVLKLLINKYPDA 285
           A+ N ++     +     D+
Sbjct: 217 ASLNSQVWSALQMSKALQDS 236

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  110 bits (277), Expect = 3e-28
 Identities = 49/271 (18%), Positives = 94/271 (34%), Gaps = 57/271 (21%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
             +G++ LH A+ ++ K +   ++                       A LN       + 
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIR----------------QVKGDLAFLN-----FQNN 43

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
                       + T LH  V+    +I  + L   G +    +  D+    PLH A   
Sbjct: 44  -----------LQQTPLHLAVITNQPEI-AEALLGAGCD---PELRDFRGNTPLHLACEQ 88

Query: 236 GNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD 290
           G +     L +         +    + NG T LHLA+ +G L +++LL++   D +  ++
Sbjct: 89  GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQE 147

Query: 291 NSD-RSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
             + R+ LH+A    N ++VS  +    +    +N V   G +P  L      + +   L
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQL 203

Query: 349 SRH------KSVNIRAKNRSARNNIALEIAE 373
            +              +      +   E  E
Sbjct: 204 GQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =   99 bits (250), Expect = 2e-24
 Identities = 45/283 (15%), Positives = 86/283 (30%), Gaps = 64/283 (22%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G++ LH+A+    + +  E++RQ     ++   + L  +N + +TPLH+A       I  
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQ-----VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK--DSVPSSY 151
            ++                    +RD  GNTPLH A        + +L +        S 
Sbjct: 63  ALLGAGCDPE-------------LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109

Query: 152 INKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL 211
           +                        +            +  T LH   +     I V++L
Sbjct: 110 LKAT---------------------NY-----------NGHTCLHLASIHGYLGI-VELL 136

Query: 212 ---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAY--KRDCNGETPLHLA 266
              G +    +  +   R  LH A    N  +   LL+     A   +    G +P  L 
Sbjct: 137 VSLGADVNAQEPCNG--RTALHLAVDLQNPDLVSLLLKCG---ADVNRVTYQGYSPYQLT 191

Query: 267 AENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
                 ++ + L     + ++              +       
Sbjct: 192 WGRPSTRIQQQLGQLTLENLQ-MLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 91.8 bits (229), Expect = 1e-21
 Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 18/164 (10%)

Query: 226 RNPLHYAAASGNVKMAQRLLEE-SKQLAY--KRDCNGETPLHLAAENGKLKVLKLLINKY 282
            + LH A       +   ++ +    LA+   ++   +TPLHLA    + ++ + L+   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 283 PDAIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLVDRNGNTPLHLAAMG 339
            D  E+RD    + LH+A + G    V  + +   +P + +++   + NG+T LHLA++ 
Sbjct: 69  CD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127

Query: 340 LHSDVVFTLSRHKSVNIRAKNRS---------ARNNIALEIAEI 374
            +  +V  L      ++ A+                   ++  +
Sbjct: 128 GYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQ-NPDLVSL 169

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 24/137 (17%)

Query: 256 DCNGETPLHLAAENG----KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF 311
             +G++ LHLA  +      ++V++ +       +  ++N  ++ LH+A       I   
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 312 -ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL-----SRHKSVNIRAKNRS--- 362
            +    +      L D  GNTPLHLA        V  L     + H    ++A N +   
Sbjct: 64  LLGAGCD----PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119

Query: 363 -----ARNNIALEIAEI 374
                + +   L I E+
Sbjct: 120 CLHLASIHG-YLGIVEL 135

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  111 bits (279), Expect = 4e-28
 Identities = 51/284 (17%), Positives = 94/284 (33%), Gaps = 74/284 (26%)

Query: 76  DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHK 135
           D +P+H AA  G++  +  ++    AVN             +   +  +PLH A    H 
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVN-------------IITADHVSPLHEACLGGHL 105

Query: 136 RVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL 192
             ++IL++  +     +N     + TPL  A                             
Sbjct: 106 SCVKILLKHGA----QVNGVTADWHTPLFNAC---------------------------- 133

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
                          V +L   G + +          +P+H AA  G+V+    L+    
Sbjct: 134 --------VSGSWDCVNLLLQHGASVQPES----DLASPIHEAARRGHVECVNSLIAYGG 181

Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
            + +K   +  TPL+LA EN +   +K L+    D +  +     S LH   +  +  + 
Sbjct: 182 NIDHK-ISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELA 238

Query: 310 SFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
             ++     +        +  G  P+ L         +F L R 
Sbjct: 239 CLLM-----DFGADTQAKNAEGKRPVELVPPESPLAQLF-LERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.8 bits (242), Expect = 5e-23
 Identities = 43/283 (15%), Positives = 85/283 (30%), Gaps = 85/283 (30%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
             + +H A    +Q  +R                L+ Q            +PLH A   G
Sbjct: 59  DWSPMHEAAIHGHQLSLRN---------------LISQGWAVNIITADHVSPLHEACLGG 103

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147
           + + V  ++K+   VN                 + +TPL NA  +     + +L++    
Sbjct: 104 HLSCVKILLKHGAQVNG-------------VTADWHTPLFNACVSGSWDCVNLLLQHG-- 148

Query: 148 PSSYINKA--YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYD 205
             + +       +P+  A                                     R+ + 
Sbjct: 149 --ASVQPESDLASPIHEAA------------------------------------RRGHV 170

Query: 206 IMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
             V  L   G N   ID    H   PL+ A  +      ++LLE    +   +    ++P
Sbjct: 171 ECVNSLIAYGGN---IDHKISHLGTPLYLACENQQRACVKKLLESGADV--NQGKGQDSP 225

Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 305
           LH        ++  LL++   D  + ++   +  + +      
Sbjct: 226 LHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPESP 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.9 bits (167), Expect = 5e-13
 Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 35/160 (21%)

Query: 232 AAASGNVKMAQRLLEE----SKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
            ++  +   +  L+      +     +   +G  P       G    ++LL N     + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG----IRLLSN----PLM 53

Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPLHLAAMGLH 341
               SD S +H AA HG+   +          NLI      N++  +  +PLH A +G H
Sbjct: 54  GDAVSDWSPMHEAAIHGHQLSL---------RNLISQGWAVNIITADHVSPLHEACLGGH 104

Query: 342 SDVVFTLSRHKS-VNIRAKN------RSARNNIALEIAEI 374
              V  L +H + VN    +       +  +  + +   +
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNACVSG-SWDCVNL 143

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 33/110 (30%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ-----KNLMDETPLHIAARIGN 88
             T L++A   + +  ++                LL       +    ++PLH   R  +
Sbjct: 190 LGTPLYLACENQQRACVK---------------KLLESGADVNQGKGQDSPLHAVVRTAS 234

Query: 89  RAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVI 138
             +   ++ +                   ++ EG  P+           +
Sbjct: 235 EELACLLMDFGADTQA-------------KNAEGKRPVELVPPESPLAQL 271

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  107 bits (270), Expect = 2e-27
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 15/221 (6%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA-IDARLNDSACFIIDKSP 180
           G   +  A+     R    L  ++     YI     T         R        + +  
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 181 ESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKM 240
           E             LH    R N    ++    N+  ++ LD      L++A   G+  +
Sbjct: 71  E--------SIDNPLHEAAKRGNLSW-LRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 241 AQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVA 300
            + L  +      +++  G+T LH AA  G   +++LL+ K     ++R+   +    +A
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMA 180

Query: 301 AKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLH 341
                 +++     +   + +  L +         + +  H
Sbjct: 181 TNAACASLLKKKQGT---DAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 19/129 (14%)

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
           K    G+  +  A    + +    L  +  D I    +   +        G   ++    
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIP--- 62

Query: 314 KSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--------ARN 365
                 N +     + + PLH AA   +   +     ++ V +   +++           
Sbjct: 63  -----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWACHG 116

Query: 366 NIALEIAEI 374
               +I E+
Sbjct: 117 G-HKDIVEM 124

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 30/243 (12%), Positives = 64/243 (26%), Gaps = 39/243 (16%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQ-NFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIV 92
           G   +  A+     +   E+  ++ + I              M +T        G   ++
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIY----------ITDMSDTNWWKGTSKGRTGLI 61

Query: 93  SEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
                                    +    + PLH A    +   +R  ++     +  +
Sbjct: 62  PSNYVA------------------EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-L 102

Query: 153 NKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL- 211
           +KA  T L  A      D    +  +    LN        T LH    +   DI V++L 
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKGYADI-VQLLL 160

Query: 212 --GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN 269
             G      D  +  ++     A  +    + ++       +    +         +   
Sbjct: 161 AKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAEDYLDDEDSDLE 216

Query: 270 GKL 272
              
Sbjct: 217 HHH 219

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  108 bits (271), Expect = 3e-27
 Identities = 55/312 (17%), Positives = 96/312 (30%), Gaps = 87/312 (27%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIE------GNTP 125
             L D   +  A    N   +  ++ ++             S  R+ D E      G T 
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFL-----------QRSKKRLTDSEFKDPETGKTC 57

Query: 126 LHNAVTNQ---HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPES 182
           L  A+ N        I +L                    + +  + +    F+     +S
Sbjct: 58  LLKAMLNLHNGQNDTIALL--------------------LDVARKTDSLKQFVNASYTDS 97

Query: 183 LNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRN-----------P 228
                     T LH  + R+N  + V +L   G + +     D+ ++            P
Sbjct: 98  YY-----KGQTALHIAIERRNMTL-VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151

Query: 229 LHYAAASGNVKMAQRLLEESKQLAY--KRDCNGETPLHLAAENGKLKVLKLL-------- 278
           L  AA +  + + + LL+ S Q A    RD  G T LH   E     V            
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 279 -------INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNT 331
                  ++      EI +    + L +AA  G   ++++IL+           + +   
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ----------REIHEPE 261

Query: 332 PLHLAAMGLHSD 343
             H AA   H  
Sbjct: 262 CRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 99.5 bits (248), Expect = 6e-24
 Identities = 52/299 (17%), Positives = 87/299 (29%), Gaps = 63/299 (21%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMD----ETPLHIAARIGNR 89
               +  AV   N Q +  +L       L+     L      D    +T L  A  +   
Sbjct: 13  DRRSIFDAVAQSNCQELESLLP-----FLQRSKKRLTDSEFKDPETGKTCLLKAM-LNLH 66

Query: 90  AIVSEIVKY---VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS 146
              ++ +     V     +    V  S +     +G T LH A+  ++  ++ +LVE   
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNAS-YTDSYYKGQTALHIAIERRNMTLVTLLVE--- 122

Query: 147 VPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDI 206
                 N A        + A  N           ++            L          I
Sbjct: 123 ------NGA-------DVQAAANGDF------FKKTKGRPGFYFGELPLSLAACTNQLAI 163

Query: 207 MVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQ---------------RLLEES 248
            VK L         I   D      LH      +  +                   L  +
Sbjct: 164 -VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222

Query: 249 KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 307
            +L    +  G TPL LAA +GK+ VL  ++ +        +  +    H AA H + +
Sbjct: 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 94.5 bits (235), Expect = 4e-22
 Identities = 41/218 (18%), Positives = 69/218 (31%), Gaps = 45/218 (20%)

Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRL-DWHQRN------PLHYAAAS---GNVKMAQ 242
             +   V + N   +  +L   +    RL D   ++       L  A  +   G      
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 243 RLLEESKQL----------AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS 292
            LL+ +++                  G+T LH+A E   + ++ LL+    D ++   N 
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANG 133

Query: 293 DRSI--------------LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
           D                 L +AA      IV F+L++      I+  D  GNT LH    
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193

Query: 339 GLHSDVVFT----------LSRHKSVNIRAKNRSARNN 366
              + V  T          L     ++   K     N 
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 90.6 bits (225), Expect = 7e-21
 Identities = 41/271 (15%), Positives = 79/271 (29%), Gaps = 69/271 (25%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
            +     + +AV   + + +  L+                        RL DS       
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLP----------------FLQRSKKRLTDS------- 46

Query: 179 SPESLNTTRLPDELTLLHFVVM--RQNYDIMVKIL---GTNKELIDRL--------DWHQ 225
                         T L   ++      +  + +L       + + +          +  
Sbjct: 47  -----EFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKG 101

Query: 226 RNPLHYAAASGNVKMAQRLLE-------------ESKQLAYKRDCNGETPLHLAAENGKL 272
           +  LH A    N+ +   L+E               K         GE PL LAA   +L
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 273 KVLKLLINKYPDA--IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI-------- 322
            ++K L+        I  RD+   ++LH   +  +  + +    +     ++        
Sbjct: 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221

Query: 323 -----NLVDRNGNTPLHLAAMGLHSDVVFTL 348
                 + +R G TPL LAA      V+  +
Sbjct: 222 TLKLEEITNRKGLTPLALAASSGKIGVLAYI 252

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  107 bits (271), Expect = 6e-27
 Identities = 36/332 (10%), Positives = 93/332 (28%), Gaps = 84/332 (25%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G  +    +     + ++  L  ++              ++   +  + A    N  +V 
Sbjct: 1   GMDLSR--INTWKSKQLKSFLSSKDTFK----------ADVHGHSASYYAIADNNVRLVC 48

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            ++      N                +E   PLH A T +  ++++IL+           
Sbjct: 49  TLLNAGALKN---------------LLENEFPLHQAATLEDTKIVKILLFSG-------- 85

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL-- 211
                   +              D               T L++ V   N    VK+   
Sbjct: 86  --------LDDSQF---------DD-----------KGNTALYYAVDSGNMQT-VKLFVK 116

Query: 212 -GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENG 270
                    +  W  +   ++A    +V +    L E             + +H+  +NG
Sbjct: 117 KNWRLMFYGKTGW--KTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNG 172

Query: 271 KLKVLKLLINKYPDAIEIRDNSDRS-ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNG 329
            + ++ LL++         ++      + +A  + +  ++  + K           D N 
Sbjct: 173 HVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFK----------YDINI 221

Query: 330 NTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 360
            +      +   +++    + +H      +  
Sbjct: 222 YSANLENVLLDDAEIAKMIIEKHVEYKSDSYT 253

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 98.8 bits (247), Expect = 1e-23
 Identities = 57/365 (15%), Positives = 108/365 (29%), Gaps = 93/365 (25%)

Query: 6   LEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLH 65
           L  +      ++K     ++ F      G++  + A+   N +++               
Sbjct: 4   LSRINTWKSKQLKSFLSSKDTFKADV-HGHSASYYAIADNNVRLVC-------------- 48

Query: 66  YSLLRQ---KNLMD-ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIE 121
            +LL     KNL++ E PLH AA + +  IV  ++      +Q              D +
Sbjct: 49  -TLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQ-------------FDDK 94

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE 181
           GNT L+ AV + + + +++ V+K+     Y    ++T    A+                 
Sbjct: 95  GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV----------------- 137

Query: 182 SLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNV 238
                                N   +V        +            + +H    +G+V
Sbjct: 138 -------------------MLNDVSIVSYFLSEIPSTF----DLAILLSCIHITIKNGHV 174

Query: 239 KMAQRLLEESKQLAYKRDCNGETP-LHLAAENGKLKVLKLLINKYPDA-IEIRDNSDRSI 296
            M   LL+         +     P + LA +N  +++L+ L     D  I   +      
Sbjct: 175 DMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKY--DINIYSAN------ 225

Query: 297 LHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355
                   +  I    I K  E            +  +                R   VN
Sbjct: 226 -LENVLLDDAEIAKMIIEKHVE----YKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVN 280

Query: 356 IRAKN 360
              KN
Sbjct: 281 CVKKN 285

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  105 bits (264), Expect = 3e-26
 Identities = 54/296 (18%), Positives = 90/296 (30%), Gaps = 63/296 (21%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL-------FRMRDIEGNT 124
           +     TPL IA+  G         +      +     V+              D  G T
Sbjct: 6   RGPDGFTPLMIASCSGGGLETGNSEE------EEDAPAVISDFIYQGASLHNQTDRTGET 59

Query: 125 PLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLN 184
            LH A         + L+E                      A  N     I D       
Sbjct: 60  ALHLAARYSRSDAAKRLLEA--------------------SADAN-----IQDN------ 88

Query: 185 TTRLPDELTLLHFVVMRQNYDIMVKILGTNKEL-IDRLDWHQRNPLHYAAASGNVKMAQR 243
                   T LH  V      +  +IL  N+   +D        PL  AA      M + 
Sbjct: 89  -----MGRTPLHAAVSADAQGV-FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 142

Query: 244 LLEESKQLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA 301
           L+      A     D  G++ LH AA    +    +L+    +  ++++N + + L +AA
Sbjct: 143 LINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAA 198

Query: 302 KHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVN 355
           + G++      +          ++ D     P  +A   +H D+V  L   H   +
Sbjct: 199 REGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  104 bits (263), Expect = 4e-26
 Identities = 66/291 (22%), Positives = 107/291 (36%), Gaps = 72/291 (24%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIA-----LRLHYSLLRQKNLMDETPLHIAARIGN 88
           G T L +A              +++  A     +    SL  Q +   ET LH+AAR   
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69

Query: 89  RAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148
                 +++     N              +D  G TPLH AV+   + V +IL+      
Sbjct: 70  SDAAKRLLEASADANI-------------QDNMGRTPLHAAVSADAQGVFQILIR----- 111

Query: 149 SSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMV 208
               N+A        +DAR                      D  T L     R   + M+
Sbjct: 112 ----NRATD------LDAR---------MH-----------DGTTPLILAA-RLAVEGML 140

Query: 209 KIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGE 260
           + L     +   +D      ++ LH+AAA  NV  A  LL+     + +      +   E
Sbjct: 141 EDLINSHADVNAVDD---LGKSALHWAAAVNNVDAAVVLLKNGANKDMQ------NNREE 191

Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF 311
           TPL LAA  G  +  K+L++ + +  +I D+ DR    +A +  + +IV  
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRL 241

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 91.8 bits (229), Expect = 2e-21
 Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 26/161 (16%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
            LH AA       A+RLLE       +      D  G TPLH A       V ++LI   
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQ------DNMGRTPLHAAVSADAQGVFQILIRNR 113

Query: 283 PDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLH 341
              ++ R +   + L +AA+     ++   I    +    +N VD  G + LH AA   +
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALHWAAAVNN 169

Query: 342 SDVVFTLSRHKSVNIRAKNRS--------ARNNIALEIAEI 374
            D    L ++   N   +N          AR   + E A++
Sbjct: 170 VDAAVVLLKNG-ANKDMQNNREETPLFLAAREG-SYETAKV 208

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.6 bits (200), Expect = 2e-17
 Identities = 45/265 (16%), Positives = 80/265 (30%), Gaps = 93/265 (35%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQ----NFIALRLHYSLLRQKNLMDETPLHIAARIGNR 89
           G T LH+A R+       + L +     N             ++ M  TPLH A     +
Sbjct: 57  GETALHLAARYSRSDAA-KRLLEASADAN------------IQDNMGRTPLHAAVSADAQ 103

Query: 90  AIVSEIVKY-----VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
                + +         ++              R  +G TPL  A     + ++  L+  
Sbjct: 104 ----GVFQILIRNRATDLDA-------------RMHDGTTPLILAARLAVEGMLEDLINS 146

Query: 145 DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNY 204
                + +N                       D               + LH+     N 
Sbjct: 147 H----ADVNAV---------------------DD-----------LGKSALHWAAAVNNV 170

Query: 205 DIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRD 256
           D    +L   G NK++ +  +     PL  AA  G+ + A+ LL+     +        D
Sbjct: 171 DA-AVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLDHFANRDIT------D 220

Query: 257 CNGETPLHLAAENGKLKVLKLLINK 281
                P  +A E     +++LL  +
Sbjct: 221 HMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 76.4 bits (189), Expect = 4e-16
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 27/143 (18%)

Query: 254 KRDCNGETPLHLAAENGK-------------LKVLKLLINKYPDAIEIRDNSDRSILHVA 300
            R  +G TPL +A+ +G                V+   I +        D +  + LH+A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 301 AKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK 359
           A++   +     +  S +     N+ D  G TPLH A       V   L R+++ ++ A+
Sbjct: 65  ARYSRSDAAKRLLEASAD----ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 360 NR--------SARNNIALEIAEI 374
                     +AR  +   + E 
Sbjct: 121 MHDGTTPLILAARLAV-EGMLED 142

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 46.3 bits (111), Expect = 7e-06
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 19/107 (17%)

Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEM-ENLI-------NLVDRNGNTPLH 334
           + +R     + L +A+  G         +   +P +  + I       N  DR G T LH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 335 LAAMGLHSDVV-FTLSRHKSVNIRAKN------RSARNNIALEIAEI 374
           LAA    SD     L      NI+          +   + A  + +I
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD-AQGVFQI 108

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  103 bits (259), Expect = 4e-26
 Identities = 44/238 (18%), Positives = 81/238 (34%), Gaps = 53/238 (22%)

Query: 117 MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFII 176
           M+  E    L  A     K+V  IL +                    +D           
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTT----------------YQVDEV--------- 35

Query: 177 DKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAA 233
           D            +  T L+  V   + +I  K L   G +   I+  +    +P  YA 
Sbjct: 36  DT-----------EGNTPLNIAVHNNDIEI-AKALIDRGAD---INLQNSISDSPYLYAG 80

Query: 234 ASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD 293
           A G  ++   +L+ +     K +  G   L  AAE G +  +KLL+    + I+ +++  
Sbjct: 81  AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG 140

Query: 294 RSILHVAAKHGNWN-----IVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
            + L  A      N     IV   +    +     ++ D +G T +  A    ++++ 
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKLLMENGAD----QSIKDNSGRTAMDYANQKGYTEIS 194

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 96.4 bits (241), Expect = 2e-23
 Identities = 36/202 (17%), Positives = 77/202 (38%), Gaps = 27/202 (13%)

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
           +   LL     R    +  +IL      +D +D     PL+ A  + ++++A+ L++   
Sbjct: 5   EVGALLEAANQRDTKKV-KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 247 --ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
               +      +   ++P   A   G+ ++L  ++      +   +    + L  AA+ G
Sbjct: 64  DINLQ------NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG 117

Query: 305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL-----HSDVVFTLSRHKSVNIRAK 359
           + + V  +L+    +  I+  +  G T L  A         + D+V  L  +   +   K
Sbjct: 118 HIDNVKLLLEDGRED--IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIK 174

Query: 360 NRS-------ARNNIALEIAEI 374
           + S       A      EI++I
Sbjct: 175 DNSGRTAMDYANQKGYTEISKI 196

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 85.6 bits (213), Expect = 9e-20
 Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 73/257 (28%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
           K       L  A +   + +   +      V++              D EGNTPL+ AV 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDE-------------VDTEGNTPLNIAVH 48

Query: 132 NQHKRVIRILVEK--DSVPSSYINKA---YQTPLSIAIDARLNDSACFIIDKSPESLNTT 186
           N    + + L+++  D      IN       +P   A                       
Sbjct: 49  NNDIEIAKALIDRGAD------INLQNSISDSPYLYAG---------------------- 80

Query: 187 RLPDELTLLHFVVMRQNYDIMVKIL----GTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
                          Q    ++  +      +    +R      N L  AA  G++   +
Sbjct: 81  --------------AQGRTEILAYMLKHATPDLNKHNRYGG---NALIPAAEKGHIDNVK 123

Query: 243 RLLEESKQLAYKRDCNGETPLHLAA-----ENGKLKVLKLLINKYPDAIEIRDNSDRSIL 297
            LLE+ ++    ++  G T L  A            ++KLL+    D   I+DNS R+ +
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAM 182

Query: 298 HVAAKHGNWNIVSFILK 314
             A + G   I   + +
Sbjct: 183 DYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 79.4 bits (197), Expect = 1e-17
 Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 15/129 (11%)

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-IL 313
           +       L  A +    KV ++L +     ++  D    + L++A  + +  I    I 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 314 KSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--------ARN 365
           +  +    INL +   ++P   A     ++++  + +H + ++   NR         A  
Sbjct: 61  RGAD----INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116

Query: 366 NIALEIAEI 374
              ++  ++
Sbjct: 117 G-HIDNVKL 124

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 64.0 bits (157), Expect = 4e-12
 Identities = 36/269 (13%), Positives = 77/269 (28%), Gaps = 97/269 (36%)

Query: 33  GGNTVLHMAVRFRNQQVIREILRQQ----NFIALRLHYSLLRQKNLMDETPLHIAARIGN 88
               +L  A + R+ + ++EIL+      +            + +    TPL+IA    +
Sbjct: 5   EVGALLEAANQ-RDTKKVKEILQDTTYQVD------------EVDTEGNTPLNIAVHNND 51

Query: 89  RAIVSEIVKY---VPA-VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
                EI K      A +N              ++   ++P   A       ++  +++ 
Sbjct: 52  I----EIAKALIDRGADINL-------------QNSISDSPYLYAGAQGRTEILAYMLKH 94

Query: 145 DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNY 204
            +   +  N+     L  A                                      + +
Sbjct: 95  ATPDLNKHNRYGGNALIPAA------------------------------------EKGH 118

Query: 205 DIMVKIL----GTNKELIDRLDWHQRNPLHYAAAS-----GNVKMAQRLLE-----ESKQ 250
              VK+L      + +  +   +     L  A            + + L+E       K 
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGY---TALIEAVGLREGNQLYQDIVKLLMENGADQSIK- 174

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLI 279
                D +G T +  A + G  ++ K+L 
Sbjct: 175 -----DNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.5 bits (140), Expect = 7e-10
 Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 80/227 (35%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
           GNT L++AV   + ++ +               +L+ +      +N + ++P   A   G
Sbjct: 39  GNTPLNIAVHNNDIEIAK---------------ALIDRGADINLQNSISDSPYLYAGAQG 83

Query: 88  NRAIVSEIVKY-----VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILV 142
                 EI+ Y      P +N+              +  G   L  A    H   +++L+
Sbjct: 84  RT----EILAYMLKHATPDLNK-------------HNRYGGNALIPAAEKGHIDNVKLLL 126

Query: 143 EKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQ 202
           E       + N    T L  A    L +                               Q
Sbjct: 127 EDGREDIDFQNDFGYTALIEA--VGLREG-----------------------------NQ 155

Query: 203 NYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
            Y  +VK+L   G ++ + D      R  + YA   G  ++++ L +
Sbjct: 156 LYQDIVKLLMENGADQSIKDN---SGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.5 bits (109), Expect = 8e-06
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
           ++     ++L  A +     +   +    +    ++ VD  GNTPL++A      ++   
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 348 LSRHKSVNIRAKNR---------SARNNIALEIAEI 374
           L      +I  +N           A+     EI   
Sbjct: 58  LIDRG-ADINLQNSISDSPYLYAGAQGR--TEILAY 90

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 18/79 (22%)

Query: 72  KNLMDETPLHIAARIGNRAIVS-EIVKYV----PAVNQAGPLPVLESLFRMRDIEGNTPL 126
           +N    T L  A  +     +  +IVK +       +               D  G T +
Sbjct: 136 QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK-------------DNSGRTAM 182

Query: 127 HNAVTNQHKRVIRILVEKD 145
             A    +  + +IL + +
Sbjct: 183 DYANQKGYTEISKILAQYN 201

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  101 bits (255), Expect = 6e-26
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----E 247
             L     R +   + ++L       D L+   +  L      G+  +A  LL+      
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 248 SKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 307
            +      D +G +P+H AA  G L  LK+L+    D + + D +    +H+A + G+  
Sbjct: 63  VQ------DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTA 115

Query: 308 IVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           +VSF+    +    ++  D  G TPL LA      D+V  L  H
Sbjct: 116 VVSFLAAESD----LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 93.2 bits (233), Expect = 7e-23
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 16/156 (10%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
           + L  AAA G+V+  +RLL          +  G+T L +    G   +   L+ +     
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-P 61

Query: 287 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHSDV 344
            ++D S  S +H AA+ G  + +  ++     E+   +N+ D  G  P+HLA    H+ V
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLV-----EHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 345 VFTLSRHKSVNIRAKNRS------ARNNIALEIAEI 374
           V  L+    ++ R            +   A ++ +I
Sbjct: 117 VSFLAAESDLHRRDARGLTPLELALQRG-AQDLVDI 151

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 72.4 bits (179), Expect = 2e-15
 Identities = 34/211 (16%), Positives = 60/211 (28%), Gaps = 64/211 (30%)

Query: 76  DETPLHIAARIGNRAIVSEIVKYVPA-VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH 134
               L  AA  G+   V  ++       +               +  G T L   +    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDA-------------LNRFGKTALQVMMFG-S 47

Query: 135 KRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL 192
             +   L+++          N                       D               
Sbjct: 48  TAIALELLKQGAS------PNVQ---------------------DT-----------SGT 69

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           + +H        D  +K+L   G +   ++  D     P+H A   G+  +   L  ES 
Sbjct: 70  SPVHDAARTGFLDT-LKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125

Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
              ++RD  G TPL LA + G   ++ +L  
Sbjct: 126 --LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 71.7 bits (177), Expect = 3e-15
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 20/132 (15%)

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK---S 315
               L  AA  G ++ ++ L+++     +  +   ++ L V    G+  I   +LK   S
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKNRS------ARNNIA 368
                  N+ D +G +P+H AA     D +  L  H   VN+     +       +    
Sbjct: 61  ------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-H 113

Query: 369 LEIAE--ITRAD 378
             +       +D
Sbjct: 114 TAVVSFLAAESD 125

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 36/215 (16%), Positives = 61/215 (28%), Gaps = 64/215 (29%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
               L  A    + Q +R +L +                N   +T L +    G+ AI  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHR--------ELVHPDALNRFGKTALQVMMF-GSTAIAL 52

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
           E++K   + N               D  G +P+H+A        +++LVE          
Sbjct: 53  ELLKQGASPNVQ-------------DTSGTSPVHDAARTGFLDTLKVLVEH--------- 90

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL-- 211
                       A +N     + D                 +H  V   +  + V  L  
Sbjct: 91  -----------GADVN-----VPDG-----------TGALPIHLAVQEGHTAV-VSFLAA 122

Query: 212 GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
            ++   + R D     PL  A   G   +   L  
Sbjct: 123 ESD---LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  105 bits (264), Expect = 7e-26
 Identities = 58/336 (17%), Positives = 112/336 (33%), Gaps = 57/336 (16%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDE--TPLHIAARIGNRAI 91
                 +  R+   +   E    +            ++  +  +       A   G+   
Sbjct: 8   QKRNEQLK-RWIGSETDLEPPVVKR-----------KKTKVKFDDGAVFLAACSSGDTEE 55

Query: 92  VSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSY 151
           V  +++    +N A             +++G T LH A  + +  +++ LVE  +     
Sbjct: 56  VLRLLERGADINYA-------------NVDGLTALHQACIDDNVDMVKFLVENGA----N 98

Query: 152 INKA---YQTPLSIAIDARLNDSACFIIDK--SPESLNTTRLPDELTLLHFVVMRQNYDI 206
           IN+       PL  A      D A ++I +     ++N+    +  T L         ++
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS----EGDTPLDIAEEEAMEEL 154

Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLA 266
           +       +  ++R                     Q L         +   +G T LH+A
Sbjct: 155 L-------QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV-RHAKSGGTALHVA 206

Query: 267 AENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL--INL 324
           A  G  +VLKLLI    D + I+D    + LH AA  G       ++     ENL  +  
Sbjct: 207 AAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILV-----ENLCDMEA 260

Query: 325 VDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
           V++ G T   +A   +   +     +  ++    K 
Sbjct: 261 VNKVGQTAFDVADEDILGYLEELQKKQ-NLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  103 bits (259), Expect = 3e-25
 Identities = 62/306 (20%), Positives = 105/306 (34%), Gaps = 71/306 (23%)

Query: 116 RMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ---TPLSIAIDARLNDSA 172
           +M D +             +  +   V K           +      L+        +  
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRK----KTKVKFDDGAVFLAACSSGDT-EEV 56

Query: 173 CFIIDK--SPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRN 227
             ++++       N     D LT LH   +  N D+ VK L   G N   I++ D     
Sbjct: 57  LRLLERGADINYANV----DGLTALHQACIDDNVDM-VKFLVENGAN---INQPDNEGWI 108

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK------ 281
           PLH AA+ G + +A+ L+ +   +    +  G+TPL +A E    ++L+  +N+      
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167

Query: 282 ----------YPDA----------IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 321
                       DA                S  + LHVAA  G   ++           L
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL---------L 218

Query: 322 I------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS-------ARNNIA 368
           I      N+ D +G TPLH AA     +    L  +   ++ A N+        A  +I 
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADEDIL 277

Query: 369 LEIAEI 374
             + E+
Sbjct: 278 GYLEEL 283

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  100 bits (251), Expect = 3e-25
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 22/159 (13%)

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
            +      GN    +  L+ ++    + D +G +PLH A   G+  V+++LI +    I 
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-IN 66

Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPLHLAAMGLH 341
           + +  D + LH+AA HG+ +IV         + L+      N V+ +GN PLH A     
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIV---------QKLLQYKADINAVNEHGNVPLHYACFWGQ 117

Query: 342 SDVVFTLSRHK-SVNIRAKNRS-----ARNNIALEIAEI 374
             V   L  +   V+I  K        A+  +   + E 
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 95.6 bits (239), Expect = 2e-23
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 25/167 (14%)

Query: 189 PDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
           P+ +  +     R+   + V++      N   +++ D H  +PLH+A   G   + + L+
Sbjct: 3   PEFMDDIFTQC-REGNAVAVRLWLDNTEND--LNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 246 E-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVA 300
                          +   +TPLHLAA +G   +++ L+    D I   +      LH A
Sbjct: 60  MRGARINVM------NRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYA 112

Query: 301 AKHGNWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVV 345
              G   +   ++      N  L+++ ++ G  P+  A   L   + 
Sbjct: 113 CFWGQDQVAEDLV-----ANGALVSICNKYGEMPVDKAKAPLRELLR 154

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.2 bits (199), Expect = 5e-18
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
                +      G    ++L ++   + +   D+   S LH A + G   +V        
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-------- 55

Query: 318 MENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--------A 363
            E LI      N+++R  +TPLHLAA   H D+V  L ++K  +I A N           
Sbjct: 56  -EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYAC 113

Query: 364 RNNIALEIAEI 374
                 ++AE 
Sbjct: 114 FWG-QDQVAED 123

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.4 bits (197), Expect = 9e-18
 Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 54/204 (26%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
             E    +       +   +R+ ++        +N+                      D 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTEND---LNQG---------------------DD 37

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
                         + LH+        + V++L   G     I+ ++     PLH AA+ 
Sbjct: 38  -----------HGFSPLHWACREGRSAV-VEMLIMRGAR---INVMNRGDDTPLHLAASH 82

Query: 236 GNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD 290
           G+  + Q+LL+      +       + +G  PLH A   G+ +V + L+      + I +
Sbjct: 83  GHRDIVQKLLQYKADINAV------NEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICN 135

Query: 291 NSDRSILHVAAKHGNWNIVSFILK 314
                 +  A       +     K
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.9 bits (193), Expect = 4e-17
 Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 62/210 (29%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPA-VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
             +    R GN   V   +      +NQ              D  G +PLH A       
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQ-------------GDDHGFSPLHWACREGRSA 53

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
           V+ +L+ +                     AR+N     ++++            + T LH
Sbjct: 54  VVEMLIMRG--------------------ARIN-----VMNR-----------GDDTPLH 77

Query: 197 FVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAY 253
                 + DI V+ L     +   I+ ++ H   PLHYA   G  ++A+ L+      A 
Sbjct: 78  LAASHGHRDI-VQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVANG---AL 130

Query: 254 --KRDCNGETPLHLAAENGKLKVLKLLINK 281
               +  GE P+  A    +  + +     
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.4 bits (145), Expect = 9e-11
 Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 65/240 (27%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
               +    R  N   +R  L            + L Q +    +PLH A R G  A+V 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDN--------TENDLNQGDDHGFSPLHWACREGRSAVVE 56

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            ++     +N               +   +TPLH A ++ H+ +++ L++  +  ++ +N
Sbjct: 57  MLIMRGARINV-------------MNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VN 102

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGT 213
           +    PL  A                                         D + + L  
Sbjct: 103 EHGNVPLHYAC------------------------------------FWGQDQVAEDLVA 126

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK 273
           N  L+   + +   P+  A A     + +R  +        ++ N   P       G  +
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRERAEK------MGQNLN-RIPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 34/118 (28%)

Query: 33  GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARI 86
           G +T LH+A    ++ ++++               LL+        N     PLH A   
Sbjct: 71  GDDTPLHLAASHGHRDIVQK---------------LLQYKADINAVNEHGNVPLHYACFW 115

Query: 87  GNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
           G   +  ++V     V+               +  G  P+  A     + +     + 
Sbjct: 116 GQDQVAEDLVANGALVSI-------------CNKYGEMPVDKAKAPLRELLRERAEKM 160

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.4 bits (249), Expect = 5e-25
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 17/140 (12%)

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
            +H  AA G +   +  L +   L  K D  G TPL  A+  G+++ ++ L+    D   
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PH 63

Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPLHLAAMGLH 341
           I      S L +A+  G  +IV           L+      N+ D NG TPL  A  G H
Sbjct: 64  ILAKERESALSLASTGGYTDIVGL---------LLERDVDINIYDWNGGTPLLYAVRGNH 114

Query: 342 SDVV-FTLSRHKSVNIRAKN 360
              V   L+R   +   A +
Sbjct: 115 VKCVEALLARGADLTTEADS 134

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 97.9 bits (245), Expect = 2e-24
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
             +H +  +   D  +K     G N   +++ D     PL +A+A G ++  + LLE   
Sbjct: 4   LSIHQLAAQGELDQ-LKEHLRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 247 --ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
                          E+ L LA+  G   ++ LL+ +  D I I D +  + L  A +  
Sbjct: 61  DPHIL------AKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGN 113

Query: 305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 361
           +   V  +L        +     +G TP+ LA    +  V   +  H  + +   N 
Sbjct: 114 HVKCVEALL---ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI-LKLFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.9 bits (219), Expect = 9e-21
 Identities = 32/221 (14%), Positives = 61/221 (27%), Gaps = 61/221 (27%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE 181
            +  +H          ++  + K     +  ++   TPL  A                  
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA------------------ 43

Query: 182 SLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNV 238
           S                         V+ L   G +      L   + + L  A+  G  
Sbjct: 44  SAF------------------GEIETVRFLLEWGAD---PHILAKERESALSLASTGGYT 82

Query: 239 KMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD 293
            +   LLE              D NG TPL  A     +K ++ L+ +  D +    +S 
Sbjct: 83  DIVGLLLERDVDINIY------DWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSG 135

Query: 294 RSILHVAAKHGNWNIVSFILKSPEMENL--INLVDRNGNTP 332
            + + +A   G   +   I       ++  +   +     P
Sbjct: 136 YTPMDLAVALGYRKVQQVIE-----NHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 83.2 bits (207), Expect = 3e-19
 Identities = 46/226 (20%), Positives = 71/226 (31%), Gaps = 71/226 (31%)

Query: 76  DETPLHIAARIGNRAIVSEIVKY-----VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV 130
           D   +H  A  G      + +K         VN+              D  G TPL  A 
Sbjct: 2   DSLSIHQLAAQGEL----DQLKEHLRKGDNLVNK-------------PDERGFTPLIWAS 44

Query: 131 TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPD 190
                  +R L+E  + P   + K  ++ LS+A                  S        
Sbjct: 45  AFGEIETVRFLLEWGADPHI-LAKERESALSLA------------------STG------ 79

Query: 191 ELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247
                        Y  +V +L     +   I+  DW+   PL YA    +VK  + LL  
Sbjct: 80  ------------GYTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLAR 124

Query: 248 SKQLAYK--RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
               A       +G TP+ LA   G  KV +++ N     +   + 
Sbjct: 125 G---ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.0 bits (196), Expect = 1e-17
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 318
               +H  A  G+L  LK  + K  + +   D    + L  A+  G    V F+L     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL----- 56

Query: 319 EN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
           E     +++ +   + L LA+ G ++D+V  L     V+I   +
Sbjct: 57  EWGADPHILAKERESALSLASTGGYTDIVGLLLERD-VDINIYD 99

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.4 bits (153), Expect = 8e-12
 Identities = 37/234 (15%), Positives = 72/234 (30%), Gaps = 67/234 (28%)

Query: 33  GGNTVLHMAVRFRNQQVIREILRQ-QNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAI 91
           G +  +H          ++E LR+  N +          + +    TPL  A+  G    
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVN---------KPDERGFTPLIWASAFGEIET 51

Query: 92  VSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSY 151
           V  ++++    +                 E  + L  A T  +  ++ +L+E+D   + Y
Sbjct: 52  VRFLLEWGADPHIL-------------AKERESALSLASTGGYTDIVGLLLERDVDINIY 98

Query: 152 INKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL 211
            +    TPL  A+                                    R N+   V+ L
Sbjct: 99  -DWNGGTPLLYAV------------------------------------RGNHVKCVEAL 121

Query: 212 ---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
              G +        +    P+  A A G  K+ Q +     +L ++ +     P
Sbjct: 122 LARGADLTTEADSGY---TPMDLAVALGYRKVQQVIENHILKL-FQSNLVPADP 171

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.4 bits (249), Expect = 2e-24
 Identities = 44/235 (18%), Positives = 75/235 (31%), Gaps = 55/235 (23%)

Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIID 177
            D  G T LH A         + L+E                      A  N     I D
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEAS--------------------ADAN-----IQD 55

Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKEL-IDRLDWHQRNPLHYAAASG 236
                          T LH  V      +  +IL  N+   +D        PL  AA   
Sbjct: 56  N-----------MGRTPLHAAVSADAQGV-FQILIRNRATDLDARMHDGTTPLILAARLA 103

Query: 237 NVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
              M + L+       +       D  G++ LH AA    +    +L+    +  ++++N
Sbjct: 104 VEGMLEDLINSHADVNAV------DDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNN 156

Query: 292 SDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
            + + L +AA+ G++      +          ++ D     P  +A   +H D+V
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIV 207

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 97.5 bits (244), Expect = 9e-24
 Identities = 61/272 (22%), Positives = 103/272 (37%), Gaps = 77/272 (28%)

Query: 71  QKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV 130
           Q +   ET LH+AAR         +++     N              +D  G TPLH AV
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASADANI-------------QDNMGRTPLHAAV 66

Query: 131 TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPD 190
           +   + V +IL+          N+A        +DAR                      D
Sbjct: 67  SADAQGVFQILIR---------NRATD------LDAR---------MH-----------D 91

Query: 191 ELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE- 246
             T L     R   + M++ L     +   ++ +D   ++ LH+AAA  NV  A  LL+ 
Sbjct: 92  GTTPLILAA-RLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147

Query: 247 ----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK 302
               + +      +   ETPL LAA  G  +  K+L++ + +  +I D+ DR    +A +
Sbjct: 148 GANKDMQ------NNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQE 200

Query: 303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLH 334
             + +IV  + +           +   +  LH
Sbjct: 201 RMHHDIVRLLDE----------YNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 93.6 bits (234), Expect = 2e-22
 Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 26/161 (16%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
            LH AA       A+RLLE       +      D  G TPLH A       V ++LI   
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADANIQ------DNMGRTPLHAAVSADAQGVFQILIRNR 81

Query: 283 PDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLH 341
              ++ R +   + L +AA+     ++   I    +    +N VD  G + LH AA   +
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALHWAAAVNN 137

Query: 342 SDVVFTLSRHKSVNIRAKNRS--------ARNNIALEIAEI 374
            D    L ++   N   +N          AR   + E A++
Sbjct: 138 VDAAVVLLKNG-ANKDMQNNREETPLFLAAREG-SYETAKV 176

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.6 bits (195), Expect = 5e-17
 Identities = 45/265 (16%), Positives = 79/265 (29%), Gaps = 93/265 (35%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQ----NFIALRLHYSLLRQKNLMDETPLHIAARIGNR 89
           G T LH+A R+       + L +     N             ++ M  TPLH A     +
Sbjct: 25  GETALHLAARYSRSDAA-KRLLEASADAN------------IQDNMGRTPLHAAVSADAQ 71

Query: 90  AIVSEIVKY-----VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
                + +         ++              R  +G TPL  A     + ++  L+  
Sbjct: 72  ----GVFQILIRNRATDLDA-------------RMHDGTTPLILAARLAVEGMLEDLINS 114

Query: 145 DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNY 204
                + +N                       D               + LH+     N 
Sbjct: 115 H----ADVNAV---------------------DD-----------LGKSALHWAAAVNNV 138

Query: 205 DIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRD 256
           D    +L   G NK++ +  +     PL  AA  G+ + A+ LL+     +        D
Sbjct: 139 DA-AVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLDHFANRDIT------D 188

Query: 257 CNGETPLHLAAENGKLKVLKLLINK 281
                P  +A E     +++LL   
Sbjct: 189 HMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.2 bits (194), Expect = 6e-17
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
               +    + +   L  + D  GET LHLAA   +    K L+    D   I+DN  R+
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRT 60

Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSV 354
            LH A       +   ++++   +  ++    +G TPL LAA      ++   ++ H  V
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118

Query: 355 NIRAKNR------SARNNIALEIAEI 374
           N            +A  N  ++ A +
Sbjct: 119 NAVDDLGKSALHWAAAVN-NVDAAVV 143

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 96.3 bits (241), Expect = 8e-24
 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 27/179 (15%)

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
             +H +  +      +             D   +    PL +AAA G + + + LL+   
Sbjct: 5   LSVHQLAAQGEMLY-LATRIEQENVINHTDEEGF---TPLMWAAAHGQIAVVEFLLQNGA 60

Query: 247 --ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
             +            E+ L LA   G   ++K+L++   D +   D +  + L  A    
Sbjct: 61  DPQLL------GKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGN 113

Query: 305 NWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 361
           +   V  +L     E+     +   +G   + LA    +  V   +  H  + +    +
Sbjct: 114 HVKCVKMLL-----ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 81.7 bits (203), Expect = 1e-18
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 55/201 (27%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE 181
            +  +H          +   +E++    + IN                       D+   
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQE----NVINHT---------------------DE--- 34

Query: 182 SLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNV 238
                   +  T L +        + V+ L   G +      L   + + L  A + G  
Sbjct: 35  --------EGFTPLMWAAAHGQIAV-VEFLLQNGAD---PQLLGKGRESALSLACSKGYT 82

Query: 239 KMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD 293
            + + LL+              D NG TPL  A     +K +K+L+    D   I  +S 
Sbjct: 83  DIVKMLLDCGVDVNEY------DWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSG 135

Query: 294 RSILHVAAKHGNWNIVSFILK 314
            + + +A   G  ++   I  
Sbjct: 136 YNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 81.3 bits (202), Expect = 2e-18
 Identities = 40/220 (18%), Positives = 70/220 (31%), Gaps = 62/220 (28%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
              +H  A  G    ++  ++    +N               D EG TPL  A  +    
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINH-------------TDEEGFTPLMWAAAHGQIA 50

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
           V+  L++  + P   + K  ++ LS+A                                 
Sbjct: 51  VVEFLLQNGADPQL-LGKGRESALSLA------------------CSK------------ 79

Query: 197 FVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAY 253
                  Y  +VK+L   G +   ++  DW+   PL YA    +VK  + LLE     A 
Sbjct: 80  ------GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLE---SGAD 127

Query: 254 K--RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
                 +G   + LA   G   V +++ +     +     
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLK-LLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 80.5 bits (200), Expect = 3e-18
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
                +H  A  G++  L   I +    I   D    + L  AA HG   +V F+L    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLL---- 56

Query: 318 MEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKN 360
            +N     L+ +   + L LA    ++D+V  L      VN    N
Sbjct: 57  -QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 101

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 28/223 (12%), Positives = 56/223 (25%), Gaps = 77/223 (34%)

Query: 33  GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARI 86
             +  +H          +                  + Q       +    TPL  AA  
Sbjct: 2   ANSLSVHQLAAQGEMLYLAT---------------RIEQENVINHTDEEGFTPLMWAAAH 46

Query: 87  GNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS 146
           G  A+V  +++                          + L  A +  +  ++++L++   
Sbjct: 47  GQIAVVEFLLQNGADPQLL-------------GKGRESALSLACSKGYTDIVKMLLDCGV 93

Query: 147 VPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDI 206
             + Y +    TPL  A                                       N+  
Sbjct: 94  DVNEY-DWNGGTPLLYA------------------VHG------------------NHVK 116

Query: 207 MVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
            VK+L   G +  +     +   N +  A A G   + Q +  
Sbjct: 117 CVKMLLESGADPTIETDSGY---NSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.1 bits (103), Expect = 3e-05
 Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 34/117 (29%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ---KNLMDE---TPLHIAARIG 87
             + L +A       +++                LL      N  D    TPL  A    
Sbjct: 69  RESALSLACSKGYTDIVKM---------------LLDCGVDVNEYDWNGGTPLLYAVHGN 113

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
           +   V  +++                        G   +  AV   ++ V +++   
Sbjct: 114 HVKCVKMLLESGADPTIE-------------TDSGYNSMDLAVALGYRSVQQVIESH 157

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 95.2 bits (238), Expect = 8e-24
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 21/142 (14%)

Query: 222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAY--KRDCNGETPLHLAAENGKLKVLKLLI 279
           +      LH A+  G++   + LL+     +    +D  G TPLH A  +G LKV++LL+
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNG---SDPNVKDHAGWTPLHEACNHGHLKVVELLL 63

Query: 280 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPL 333
                 +      + S LH AAK+G+ +IV           L+      N V+  G  P+
Sbjct: 64  QHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKL---------LLSYGASRNAVNIFGLRPV 113

Query: 334 HLAAMGLHSDVVFTLSRHKSVN 355
                     ++    +++S +
Sbjct: 114 DYTDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 79.0 bits (196), Expect = 5e-18
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 18/130 (13%)

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
            +  GET LH+A+  G +  ++ L+    D   ++D++  + LH A  HG+  +V  +L 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLL- 63

Query: 315 SPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR--------SAR 364
               ++  L+N      ++PLH AA   H D+V  L  +   +  A N         +  
Sbjct: 64  ----QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDD 118

Query: 365 NNIALEIAEI 374
            ++   +  +
Sbjct: 119 ESM-KSLLLL 127

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 48/168 (28%)

Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIID 177
            +  G T LH A        +  L++  S P+   + A  TPL  A              
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEA--CNHG-------- 54

Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
                                    +  + V++L  +K L++   +   +PLH AA +G+
Sbjct: 55  -------------------------HLKV-VELLLQHKALVNTTGYQNDSPLHDAAKNGH 88

Query: 238 VKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
           V + + LL       +       +  G  P+    +     +L L   
Sbjct: 89  VDIVKLLLSYGASRNAV------NIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 35/138 (25%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
           G T+LH+A    +   +                 LL+       K+    TPLH A   G
Sbjct: 10  GETLLHIASIKGDIPSVEY---------------LLQNGSDPNVKDHAGWTPLHEACNHG 54

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147
           +  +V  ++++   VN                 + ++PLH+A  N H  ++++L+   + 
Sbjct: 55  HLKVVELLLQHKALVNT-------------TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

Query: 148 PSSYINKAYQTPLSIAID 165
            ++ +N     P+    D
Sbjct: 102 RNA-VNIFGLRPVDYTDD 118

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 56/178 (31%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
            N   ET LHIA+  G+   V  +++     N              +D  G TPLH A  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-------------KDHAGWTPLHEACN 52

Query: 132 NQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191
           + H +V+ +L++                      A +N +                    
Sbjct: 53  HGHLKVVELLLQH--------------------KALVNTTGY----------------QN 76

Query: 192 LTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
            + LH      + DI VK+L   G ++  ++        P+ Y        +     +
Sbjct: 77  DSPLHDAAKNGHVDI-VKLLLSYGASRNAVNI---FGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
               +++PLH AA+ G+  IV  ++ Y  + N               +I G  P+     
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA-------------VNIFGLRPVDYTDD 118

Query: 132 NQHKRVIRILVEKDSVPSS 150
              K ++ +  + +S  +S
Sbjct: 119 ESMKSLLLLPEKNESSSAS 137

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 98.3 bits (245), Expect = 9e-24
 Identities = 48/291 (16%), Positives = 85/291 (29%), Gaps = 70/291 (24%)

Query: 76  DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ-- 133
           D   L      G    ++ +++Y+   ++                 G T L  AV N   
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYT-----EGSTGKTCLMKAVLNLQD 56

Query: 134 -HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL 192
                I  L++ D                  ++A+  D                      
Sbjct: 57  GVNACIMPLLQID---------KDSGNPKPLVNAQCTDEFY----------------QGH 91

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRN----------PLHYAAASGNVK 239
           + LH  + +++    VK+L   G +  L     + Q++          PL  AA +    
Sbjct: 92  SALHIAIEKRSLQC-VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

Query: 240 MAQRLLEESKQLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSIL 297
           +   LLE   Q A     D  G T LH                         ++ + S L
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIAD------------------NSPENSAL 192

Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
            +    G   + + +        L  + +  G TPL LAA     ++   +
Sbjct: 193 VIHMYDGLLQMGARLC---PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 88.7 bits (220), Expect = 3e-20
 Identities = 43/267 (16%), Positives = 93/267 (34%), Gaps = 44/267 (16%)

Query: 34  GNTVLHMAVRFRNQQVIREILR--QQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAI 91
               L   V     + +  +L   + N   L         +    +T L  A  +  +  
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS---AYTEGSTGKTCLMKAV-LNLQDG 57

Query: 92  VSEIVKYV--PAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK----- 144
           V+  +  +     +   P P++ +       +G++ LH A+  +  + +++LVE      
Sbjct: 58  VNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH 117

Query: 145 -------DSVPSSYINKAYQTPLSIAIDARLN--DSACFIIDKSPESLNTTRL-PDELTL 194
                              + PLS+A  A     D   ++++   +  +         T+
Sbjct: 118 LRACGRFFQKHQGTCFYFGELPLSLA--ACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175

Query: 195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYK 254
           LH +VM  +                  +  + + L      G ++M  RL    +     
Sbjct: 176 LHALVMIAD------------------NSPENSALVIHMYDGLLQMGARLCPTVQLEE-I 216

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINK 281
            +  G TPL LAA+ GK+++ + ++ +
Sbjct: 217 SNHQGLTPLKLAAKEGKIEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 23/122 (18%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALR----------LHYSLLRQKNLMDETPLHIA 83
           G   L +A   +   V+  +L   +  A            LH  ++   N  + + L I 
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 84  ARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVE 143
              G   + + +   V                 + + +G TPL  A       + R +++
Sbjct: 196 MYDGLLQMGARLCPTVQLEE-------------ISNHQGLTPLKLAAKEGKIEIFRHILQ 242

Query: 144 KD 145
           ++
Sbjct: 243 RE 244

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 87.3 bits (217), Expect = 5e-20
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 26/172 (15%)

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD--- 284
           PL  AA   +V+   +LL+      ++R   GET LH+AA    L+   +L+   P+   
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

Query: 285 -AIEIRDNSDRSILHVAAKHGNWNIVSFIL----------KSPEMENLINLVDRNGNTPL 333
             +       ++ LH+A  + N N+V  +L                   + +   G  PL
Sbjct: 66  EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125

Query: 334 HLAAMGLHSDVVFTLSRHKSVNIRAKNR--------SARNN---IALEIAEI 374
             AA     ++V  L  H   +IRA++                  A ++  +
Sbjct: 126 SFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 52/317 (16%), Positives = 81/317 (25%), Gaps = 102/317 (32%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
           E    I +R                                   EG         + H  
Sbjct: 2   EVNKIIGSRTAG--------------------------------EGAMEYLIEWKDGHSP 29

Query: 137 VIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTL 194
                     D      +   Y+TP   A  AR  D                       L
Sbjct: 30  SWVPSSYIAAD------VVSEYETPWWTA--ARKAD------------EQALSQ-----L 64

Query: 195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYK 254
           L                  +   +D +D + R  L + A  G+ K  + L E    L ++
Sbjct: 65  LE---------------DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF--- 311
               G T LH+AA   + +V++ L+    D IE+ D    + L +A +            
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPMQ 165

Query: 312 ------------ILKSPEMENL----INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355
                       +L+    E      I      G    +L       D  +    H +  
Sbjct: 166 FGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVA-E 224

Query: 356 IRAKNRSARNNIALEIA 372
             AK+        LE A
Sbjct: 225 DVAKD----YEDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 90.7 bits (226), Expect = 4e-21
 Identities = 38/161 (23%), Positives = 59/161 (36%), Gaps = 14/161 (8%)

Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
             P   AA   + +   +LLE+        D NG T L   A  G  K ++LL     D 
Sbjct: 46  ETPWWTAARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD- 102

Query: 286 IEIRDNSD-RSILHVAAKHGNWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHS 342
           ++ RD     + LH+AA +    +V  ++     E    I + D  G T L LA   L +
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALV-----ELGADIEVEDERGLTALELAREILKT 157

Query: 343 DVVFTLSRHKS-VNIRAKNRSARNNIA--LEIAEITRADGK 380
                  +    + +          +    E+ EI    GK
Sbjct: 158 TPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGK 198

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 20/190 (10%)

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-I 286
                   G+          +  +        ETP   AA     + L  L+    D  +
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE---DRDV 70

Query: 287 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVD-RNGNTPLHLAAMGLHSDVV 345
           +  D + R+ L   A  G+   V  +    E    ++  D R G T LH+AA  +  +VV
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCVRLLA---EAGADLDHRDMRGGLTALHMAAGYVRPEVV 127

Query: 346 FTLSRHKSVNIRAKNRS-------ARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR 398
             L      +I  ++         AR  +           G+ I     +  L+    + 
Sbjct: 128 EALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY 186

Query: 399 ALSAEELQQK 408
           A   E ++++
Sbjct: 187 AEVDEIVEKR 196

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 32/265 (12%), Positives = 69/265 (26%), Gaps = 74/265 (27%)

Query: 76  DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHK 135
            ETP   AAR  +   +S++++    V+               D  G T L         
Sbjct: 45  YETPWWTAARKADEQALSQLLEDR-DVDA-------------VDENGRTALLFVAGLGSD 90

Query: 136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLL 195
           + +R+L E                    +D R                        LT L
Sbjct: 91  KCVRLLAEAG----------------ADLDHRDMR-------------------GGLTAL 115

Query: 196 HFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252
           H        ++ V+ L   G + E+ D         L  A            ++  +++ 
Sbjct: 116 HMAAGYVRPEV-VEALVELGADIEVEDE---RGLTALELAREILKTTPKGNPMQFGRRIG 171

Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
            +        +         +V +++          +    + + ++       +     
Sbjct: 172 LE----KVINVLEGQVFEYAEVDEIV---------EKRGKGKDVEYLVRWKDGGDCEWVK 218

Query: 313 LKSPEMENLINLVDRNGNTPLHLAA 337
                  ++   V ++    L  A 
Sbjct: 219 GV-----HVAEDVAKDYEDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 34/275 (12%), Positives = 64/275 (23%), Gaps = 82/275 (29%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
             T    A R  ++Q + ++L  ++  A           +    T L   A +G+   V 
Sbjct: 45  YETPWWTAARKADEQALSQLLEDRDVDA----------VDENGRTALLFVAGLGSDKCVR 94

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIE-GNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
            + +    ++              RD+  G T LH A       V+  LVE         
Sbjct: 95  LLAEAGADLDH-------------RDMRGGLTALHMAAGYVRPEVVEALVEL-------- 133

Query: 153 NKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL- 211
                        A +      + D+             LT L                 
Sbjct: 134 ------------GADIE-----VEDE-----------RGLTALELAR-EILKTTPKGNPM 164

Query: 212 --GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN 269
             G    L           +         ++ + + +            G+   +L    
Sbjct: 165 QFGRRIGLEK------VINVLEGQVFEYAEVDEIVEK---------RGKGKDVEYLVRWK 209

Query: 270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
                  +      +    +D      L  A    
Sbjct: 210 DGGDCEWVKGVHVAE-DVAKDY--EDGLEYAVAES 241

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 93.7 bits (234), Expect = 5e-23
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
            + L  AAA G V+  + LLE         +  G  P+ +    G  +V +LL+    + 
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE- 69

Query: 286 IEIRDNSDRSI-LHVAAKHGNWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHS 342
               D +  +  +H AA+ G  + +  +           +++ D  G  P+ LA    H 
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLH-----RAGARLDVRDAWGRLPVDLAEELGHR 124

Query: 343 DVV-FTLSRHKSVNIRAKNRSARNNIALEIAE 373
           DV  +  +           R        +I +
Sbjct: 125 DVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 13/157 (8%)

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
                L     R   +  V+ L       +  + + R P+      G+ ++A+ LL    
Sbjct: 11  PSADWLATAAARGRVEE-VRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGA 68

Query: 250 QLAYKRDCNGET-PLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 308
           +     D    T P+H AA  G L  L +L       +++RD   R  + +A + G+ ++
Sbjct: 69  EPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDV 126

Query: 309 VSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
             ++                G+    + A    SD+ 
Sbjct: 127 ARYLRA--------AAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 74.8 bits (185), Expect = 3e-16
 Identities = 32/192 (16%), Positives = 53/192 (27%), Gaps = 50/192 (26%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP 180
                L  A        +R L+E  + P++  N   + P+ +                  
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVM----------------- 52

Query: 181 ESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGN 237
                              M  +  +  ++L   G      D        P+H AA  G 
Sbjct: 53  -------------------MMGSARV-AELLLLHGAEPNCADPATL--TRPVHDAAREGF 90

Query: 238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSIL 297
           +     L     +L   RD  G  P+ LA E G   V + L           ++      
Sbjct: 91  LDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNH-----A 143

Query: 298 HVAAKHGNWNIV 309
            + A  G  +I 
Sbjct: 144 RIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 68.3 bits (168), Expect = 5e-14
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 13/108 (12%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK--- 314
                L  AA  G+++ ++ L+    +     ++  R  + V    G+  +   +L    
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELLLLHGA 68

Query: 315 SPEMENLINLVDRNGNT-PLHLAAMGLHSDVVFTLSRHK-SVNIRAKN 360
                   N  D    T P+H AA     D +  L R    +++R   
Sbjct: 69  E------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW 110

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 29/198 (14%), Positives = 49/198 (24%), Gaps = 56/198 (28%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
              L  AA  G    V  +++     N               +  G  P+   +     R
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPNA-------------PNSYGRRPIQVMMMG-SAR 58

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
           V  +L+   + P+         P+  A  AR                             
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDA--AREG--------------------------- 89

Query: 197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD 256
                   D  + +L      +D  D   R P+  A   G+  +A+ L            
Sbjct: 90  ------FLDT-LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA---AAG---G 136

Query: 257 CNGETPLHLAAENGKLKV 274
             G     + A  G   +
Sbjct: 137 TRGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 41.7 bits (99), Expect = 7e-05
 Identities = 22/142 (15%), Positives = 36/142 (25%), Gaps = 51/142 (35%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
               L  A      + +R               +LL         N     P+ +    G
Sbjct: 12  SADWLATAAARGRVEEVR---------------ALLEAGANPNAPNSYGRRPIQVMMM-G 55

Query: 88  NRAIVSEIVKY-------VPAVNQAG---PL---------PVLESLFR------MRDIEG 122
           +    + + +            + A    P+           L  L R      +RD  G
Sbjct: 56  S----ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111

Query: 123 NTPLHNAVTNQHKRVIRILVEK 144
             P+  A    H+ V R L   
Sbjct: 112 RLPVDLAEELGHRDVARYLRAA 133

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 95.4 bits (238), Expect = 8e-23
 Identities = 36/269 (13%), Positives = 78/269 (28%), Gaps = 60/269 (22%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
           +I G   L        ++     +                        R+  +       
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG--------------------MRVKFN------- 34

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV 238
                     P  L LL    +   +D+ V+ +    +     +      LH A  +G+ 
Sbjct: 35  ----------PLPLALLLDSSLEGEFDL-VQRIIYEVDDPSLPNDEGITALHNAVCAGHT 83

Query: 239 KMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD 293
           ++ + L++      +       D +G TPLH AA    ++V K L+      +     SD
Sbjct: 84  EIVKFLVQFGVNVNAA------DSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSD 136

Query: 294 ---RSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
               +      + G      F+      E  + ++++     L         ++      
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYG--VQEK-MGIMNKGVIYALWDYEPQNDDELPM---- 189

Query: 351 HKSVNIRAKNRSARNNIALEIAEITRADG 379
            +   +   +R   + I    A +   +G
Sbjct: 190 KEGDCMTIIHREDEDEIEWWWARLNDKEG 218

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 45/311 (14%), Positives = 82/311 (26%), Gaps = 94/311 (30%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQ---QNFIALRLHYSLLRQKNLMDETPLHIAARIGNRA 90
           G   L    R   ++   E +       F             N +    L  ++  G   
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKF-------------NPLPLALLLDSSLEGEFD 51

Query: 91  IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
           +V  I+  V   +               + EG T LHNAV   H  +++ LV+       
Sbjct: 52  LVQRIIYEVDDPSLP-------------NDEGITALHNAVCAGHTEIVKFLVQFG----V 94

Query: 151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKI 210
            +N A                     D            D  T LH      N  +  K 
Sbjct: 95  NVNAA---------------------DS-----------DGWTPLHCAASCNNVQV-CKF 121

Query: 211 L---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267
           L   G     +   D             G  + +Q L    +++    +      L    
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM-NKGVIYALWDYE 180

Query: 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDR 327
                ++             +++    +I+H      + + + +            L D+
Sbjct: 181 PQNDDELP------------MKEGDCMTIIH----REDEDEIEWWWA--------RLNDK 216

Query: 328 NGNTPLHLAAM 338
            G  P +L  +
Sbjct: 217 EGYVPRNLLGL 227

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 97.0 bits (241), Expect = 9e-23
 Identities = 53/304 (17%), Positives = 100/304 (32%), Gaps = 26/304 (8%)

Query: 76  DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHK 135
           D              + S+ +     + +A P PV+      + ++    L   +  + +
Sbjct: 19  DNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVND--NEQKMKLEAFLQRLLFPEIQ 76

Query: 136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLL 195
            +   L    S  +S    + Q    ++ D+ L +      +     LN        T L
Sbjct: 77  EMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPL 135

Query: 196 HFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQ---RLLEESK 249
           H++    N ++ VK L   G+N       D    + L  A  S N   +     LL+   
Sbjct: 136 HWLTSIANLEL-VKHLVKHGSN---RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191

Query: 250 QLAYKRDCNGETPLHLAAENGKLK------------VLKLLINKYPDAIEIRDNSDRSIL 297
                 D    T LH       +             ++  ++ K    I+   N   S  
Sbjct: 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP 251

Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVNI 356
           +        +I+  +     + N++N  D NG+T L++AA   +  +V  L        I
Sbjct: 252 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI 311

Query: 357 RAKN 360
             K+
Sbjct: 312 ANKS 315

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 76.6 bits (188), Expect = 9e-16
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 54/235 (22%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
           D  GNTPLH   +  +  +++ LV+  S      +   ++ L  A+ +  N         
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNN--------- 177

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV 238
                                   +      +L      +   D   R  LH+   +  +
Sbjct: 178 -----------------------YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 214

Query: 239 K------------MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
                        +   ++++  +         E+  +      K  +L+ L  K+  A 
Sbjct: 215 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274

Query: 287 EI--RDNSDRSILHVAAKHGNWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAA 337
            +  +D++  + L++AA+ GN +IV  +L     +      + +++G  P+   A
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALL-----DYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.5 bits (154), Expect = 2e-11
 Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 30/209 (14%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH-- 134
            TPLH    I N  +V  +VK+                    D  G + L  AV + +  
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRL-------------YGDNMGESCLVKAVKSVNNY 178

Query: 135 -KRVIRILVEKDSVPSSYINKAYQTPLSIAIDAR-----------LNDSACFIIDKSPES 182
                  L++         +   +T L   I                D     I K    
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238

Query: 183 LNTTRLPDELTLLHFVVM--RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKM 240
              +   ++ +  +      + +    + +      +++  D +    L+ AA  GN+ +
Sbjct: 239 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 298

Query: 241 AQRLLEESKQLAYKRDCNGETPLHLAAEN 269
              LL+      +  + +G  P+   A  
Sbjct: 299 VDALLDYGADP-FIANKSGLRPVDFGAGL 326

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 91.7 bits (229), Expect = 3e-22
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 25/160 (15%)

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
            L  AA +G+V+  ++L           +    TPLH AA   ++ V++ L+    D + 
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VH 69

Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPLHLAAMGLH 341
            +D      LH A  +G++ +          E L+      N+ D    TPLH AA    
Sbjct: 70  AKDKGGLVPLHNACSYGHYEVA---------ELLVKHGAVVNVADLWKFTPLHEAAAKGK 120

Query: 342 SDVVFTLSRHKSVNIRAKNRS-------ARNNIALEIAEI 374
            ++   L +H   +   KNR         ++    +I ++
Sbjct: 121 YEICKLLLQHG-ADPTKKNRDGNTPLDLVKDG-DTDIQDL 158

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 89.4 bits (223), Expect = 2e-21
 Identities = 44/178 (24%), Positives = 67/178 (37%), Gaps = 38/178 (21%)

Query: 190 DELTLLHFVVMRQNYDIMVKIL----GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
           +    L       + +  VK L      N      ++  Q  PLH+AA    V + + LL
Sbjct: 7   EADRQLLEAAKAGDVET-VKKLCTVQSVN---CRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 246 E-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-IEIRDNSDRSILHV 299
           +      +K      D  G  PLH A   G  +V +LL+     A + + D    + LH 
Sbjct: 63  QHGADVHAK------DKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHE 114

Query: 300 AAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           AA  G + I          + L+         +R+GNTPL L   G  +D+   L   
Sbjct: 115 AAAKGKYEIC---------KLLLQHGADPTKKNRDGNTPLDLVKDG-DTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 72.0 bits (178), Expect = 3e-15
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 25/131 (19%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
             +  L  AA+ G ++ +K L           +    + LH AA +   ++V        
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV-------- 58

Query: 318 MENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--------A 363
            E L+      +  D+ G  PLH A    H +V   L +H    +   +          A
Sbjct: 59  -EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAA 116

Query: 364 RNNIALEIAEI 374
                 EI ++
Sbjct: 117 AKG-KYEICKL 126

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 68.6 bits (169), Expect = 5e-14
 Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 73/221 (33%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKY---VPAVNQAGPLPVLESLFRMRDIEGNTPLHN 128
            N   +  L  AA+ G+     E VK    V +VN            R  +   +TPLH 
Sbjct: 4   GNSEADRQLLEAAKAGDV----ETVKKLCTVQSVN-----------CRDIEGRQSTPLHF 48

Query: 129 AVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRL 188
           A       V+  L++         + A        + A+         DK          
Sbjct: 49  AAGYNRVSVVEYLLQ---------HGAD-------VHAK---------DK---------- 73

Query: 189 PDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
              L  LH      +Y++  ++L   G     ++  D  +  PLH AAA G  ++ + LL
Sbjct: 74  -GGLVPLHNACSYGHYEV-AELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLL 128

Query: 246 E-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           +       K      + +G TPL L   +G   +  LL   
Sbjct: 129 QHGADPTKK------NRDGNTPLDLVK-DGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.8 bits (115), Expect = 7e-07
 Identities = 40/220 (18%), Positives = 67/220 (30%), Gaps = 73/220 (33%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
            +  L  A +  + + ++++   Q+           R       TPLH AA         
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNC--------RDIEGRQSTPLHFAAGYNRV---- 55

Query: 94  EIVKYVPA----VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149
            +V+Y+      V+              +D  G  PLHNA +  H  V  +LV+      
Sbjct: 56  SVVEYLLQHGADVHA-------------KDKGGLVPLHNACSYGHYEVAELLVKHG---- 98

Query: 150 SYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVK 209
           + +N A                     D             + T LH    +  Y+I  K
Sbjct: 99  AVVNVA---------------------DL-----------WKFTPLHEAAAKGKYEI-CK 125

Query: 210 IL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           +L   G +    +R       PL      G+  +   L  
Sbjct: 126 LLLQHGADPTKKNR---DGNTPLDL-VKDGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 45.1 bits (108), Expect = 7e-06
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 290 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
           ++     L  AAK G+   V  +  + +  N    ++   +TPLH AA      VV  L 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLC-TVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 350 RHKSVNIRAKNRS--------ARNNIALEIAEI 374
           +H   ++ AK++                E+AE+
Sbjct: 63  QHG-ADVHAKDKGGLVPLHNACSYG-HYEVAEL 93

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 38.9 bits (92), Expect = 9e-04
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 9/58 (15%)

Query: 325 VDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--------ARNNIALEIAEI 374
            +   +  L  AA     + V  L   +SVN R             A  N  + + E 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN-RVSVVEY 60

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.5 bits (226), Expect = 5e-22
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 18/156 (11%)

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
            L  AA +G     + L+  +    +  D  G +PLHLAA+ G     ++L+       +
Sbjct: 5   KLLEAARAGQDDEVRILM--ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RD 61

Query: 288 IRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346
            R   DR+ LH+AA  G+ NIV   +    +    +N  D    T LH A    H +VV 
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVVE 117

Query: 347 TLSRHKSVNIRAKNR--------SARNNIALEIAEI 374
            L ++   ++  +++        S  N    ++AEI
Sbjct: 118 LLIKYG-ADVHTQSKFCKTAFDISIDNG-NEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 21/163 (12%)

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
           D    L         D  V+IL  N       DW   +PLH AA  G+    + LL    
Sbjct: 1   DLGKKLLEAARAGQDDE-VRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 247 --ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
             +++           TPLH+AA  G   ++++L+    D +  +D    + LH A +H 
Sbjct: 59  SRDAR------TKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHN 111

Query: 305 NWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVV 345
           +  +V  ++K         ++   +   T   ++    + D+ 
Sbjct: 112 HQEVVELLIK-----YGADVHTQSKFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 80.1 bits (199), Expect = 3e-18
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 56/197 (28%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP 180
           +    L  A        +RIL+   +                              D   
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGA----PFTT----------------------DW-- 32

Query: 181 ESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGN 237
                       + LH      ++    ++L   G +    D      R PLH AA+ G+
Sbjct: 33  ---------LGTSPLHLAAQYGHFST-TEVLLRAGVS---RDARTKVDRTPLHMAASEGH 79

Query: 238 VKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS 292
             + + LL+      +K      D    T LH A E+   +V++LLI    D +  +   
Sbjct: 80  ANIVEVLLKHGADVNAK------DMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKF 132

Query: 293 DRSILHVAAKHGNWNIV 309
            ++   ++  +GN ++ 
Sbjct: 133 CKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 17/126 (13%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSP 316
           +    L  AA  G+   +++L+     A    D    S LH+AA++G+++     +    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--------ARNNIA 368
                 +   +   TPLH+AA   H+++V  L +H   ++ AK+            +N  
Sbjct: 59  S----RDARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHN-H 112

Query: 369 LEIAEI 374
            E+ E+
Sbjct: 113 QEVVEL 118

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 68.6 bits (169), Expect = 4e-14
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 68/210 (32%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
              L  AAR G    V  ++                      D  G +PLH A    H  
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT--------------DWLGTSPLHLAAQYGHFS 48

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
              +L+                   ++ DAR          K            + T LH
Sbjct: 49  TTEVLLRAG----------------VSRDAR---------TK-----------VDRTPLH 72

Query: 197 FVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ES 248
                 + +I V++L   G +   ++  D  +   LH+A    + ++ + L++      +
Sbjct: 73  MAASEGHANI-VEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128

Query: 249 KQLAYKRDCNGETPLHLAAENGKLKVLKLL 278
           +          +T   ++ +NG   + ++L
Sbjct: 129 Q------SKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 66/214 (30%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
               L  A R      +R ++                  + +  +PLH+AA+ G+ +   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT----------TDWLGTSPLHLAAQYGHFSTTE 51

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            +++   + +              R     TPLH A +  H  ++ +L++      + +N
Sbjct: 52  VLLRAGVSRDA-------------RTKVDRTPLHMAASEGHANIVEVLLKHG----ADVN 94

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL-- 211
                                  D             ++T LH+     + ++ V++L  
Sbjct: 95  AK---------------------DM-----------LKMTALHWATEHNHQEV-VELLIK 121

Query: 212 -GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
            G +     +           +  +GN  +A+ L
Sbjct: 122 YGADVHTQSKFCK---TAFDISIDNGNEDLAEIL 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 90.9 bits (227), Expect = 5e-22
 Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 25/162 (15%)

Query: 226 RNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
            N L  AAA G+++    LL+      ++      +  G T L +    G  ++ + L+ 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQ------NGFGRTALQVMK-LGNPEIARRLLL 58

Query: 281 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMG 339
           +  +  +++D +  +++H AA+ G  + +   +    +    +N+ D  GN PLHLAA  
Sbjct: 59  RGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD----VNIEDNEGNLPLHLAAKE 113

Query: 340 LHSDVVFTLSRHKSVNIRAKNR-------SARNNIALEIAEI 374
            H  VV  L +H + N+  +N         AR     E+  +
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 90.1 bits (225), Expect = 1e-21
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 22/161 (13%)

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
             L     R + +  +  L     N   ++  +   R  L      GN ++A+RLL    
Sbjct: 7   NELASAAARGDLEQ-LTSLLQNNVN---VNAQNGFGRTALQV-MKLGNPEIARRLLLRGA 61

Query: 247 --ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
             + K      D  G   +H AA  G L  L+ L+    D + I DN     LH+AAK G
Sbjct: 62  NPDLK------DRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEG 114

Query: 305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
           +  +V F++      N +   +  G+T   LA +   ++VV
Sbjct: 115 HLRVVEFLV-KHTASN-VGHRNHKGDTACDLARLYGRNEVV 153

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 79.3 bits (197), Expect = 7e-18
 Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 61/205 (29%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY---QTPLSIAIDARLNDSACFIID 177
                L +A        +  L++ +      +N      +T L +               
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNV----NVNAQNGFGRTALQVM-------------- 45

Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAA 234
                                  +     + + L   G N +L DR  +     +H AA 
Sbjct: 46  -----------------------KLGNPEIARRLLLRGANPDLKDRTGF---AVIHDAAR 79

Query: 235 SGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           +G +   Q LLE       +      D  G  PLHLAA+ G L+V++ L+      +  R
Sbjct: 80  AGFLDTLQTLLEFQADVNIE------DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133

Query: 290 DNSDRSILHVAAKHGNWNIVSFILK 314
           ++   +   +A  +G   +VS +  
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 71.6 bits (177), Expect = 4e-15
 Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 65/212 (30%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYV----PAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTN 132
              L  AA  G+     E +  +      VN              ++  G T L      
Sbjct: 6   GNELASAAARGDL----EQLTSLLQNNVNVN-------------AQNGFGRTALQVMKLG 48

Query: 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL 192
            +  + R L+ + +      +                       D+              
Sbjct: 49  -NPEIARRLLLRGA----NPDLK---------------------DR-----------TGF 71

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
            ++H        D  ++ L     +  + D        PLH AA  G++++ + L++ + 
Sbjct: 72  AVIHDAARAGFLDT-LQTLLEFQADVNIEDNEGN---LPLHLAAKEGHLRVVEFLVKHTA 127

Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
                R+  G+T   LA   G+ +V+ L+   
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 70.9 bits (175), Expect = 7e-15
 Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSP 316
                L  AA  G L+ L  L+    + +  ++   R+ L V    GN  I    +L+  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGA 61

Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKNRS------ARNNIAL 369
                 +L DR G   +H AA     D + TL   +  VNI     +      A+    L
Sbjct: 62  N----PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HL 116

Query: 370 EIAEI 374
            + E 
Sbjct: 117 RVVEF 121

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.8 bits (115), Expect = 7e-07
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
           K+      +H AAR G    +  ++++   VN               D EGN PLH A  
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-------------EDNEGNLPLHLAAK 112

Query: 132 NQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
             H RV+  LV+  +    + N    T   +A
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 39/120 (32%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQ----NFIALRLHYSLLRQKNLMDETPLHIAARIGNR 89
           G  V+H A R      + + L +     N             ++     PLH+AA+ G+ 
Sbjct: 70  GFAVIHDAARAGFLDTL-QTLLEFQADVN------------IEDNEGNLPLHLAAKEGHL 116

Query: 90  AIVSEIVKY-----VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
                +V++        V               R+ +G+T    A       V+ ++   
Sbjct: 117 ----RVVEFLVKHTASNVGH-------------RNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 26/224 (11%), Positives = 53/224 (23%), Gaps = 79/224 (35%)

Query: 33  GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARI 86
                L  A    + + +                SLL+       +N    T L +   +
Sbjct: 4   PWGNELASAAARGDLEQLT---------------SLLQNNVNVNAQNGFGRTALQVMK-L 47

Query: 87  GNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS 146
           GN  I   ++      +              +D  G   +H+A        ++ L+E   
Sbjct: 48  GNPEIARRLLLRGANPDL-------------KDRTGFAVIHDAARAGFLDTLQTLLEFQ- 93

Query: 147 VPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDI 206
              + +N                       D            +    LH      +  +
Sbjct: 94  ---ADVNIE---------------------DN-----------EGNLPLHLAAKEGHLRV 118

Query: 207 MVKIL----GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
            V+ L     +N    +            A   G  ++   +  
Sbjct: 119 -VEFLVKHTASNVGHRNHKGD---TACDLARLYGRNEVVSLMQA 158

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 89.7 bits (224), Expect = 6e-22
 Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 15/123 (12%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
           PLH AA +G++++ + LLE      +K      D NG TPLHLAA NG L+V+KLL+   
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 283 PDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHS 342
            D +  +D + R+ LH+AA++G+  +V  +L   E    +N  D+NG TPLHLAA   H 
Sbjct: 59  AD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHL 114

Query: 343 DVV 345
           +VV
Sbjct: 115 EVV 117

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 76.2 bits (189), Expect = 4e-17
 Identities = 49/125 (39%), Positives = 73/125 (58%), Gaps = 14/125 (11%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
           NG TPLHLAA NG L+V+KLL+    D +  +D + R+ LH+AA++G+  +V  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--------ARNNIAL 369
               +N  D+NG TPLHLAA   H +VV  L      ++ AK+++        ARN   L
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG-HL 114

Query: 370 EIAEI 374
           E+ ++
Sbjct: 115 EVVKL 119

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.9 bits (183), Expect = 2e-16
 Identities = 46/130 (35%), Positives = 75/130 (57%), Gaps = 19/130 (14%)

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
           T LH      + ++ VK+L   G +   ++  D + R PLH AA +G++++ + LLE   
Sbjct: 4   TPLHLAARNGHLEV-VKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 247 --ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
              +K      D NG TPLHLAA NG L+V+KLL+    D +  +D + R+ LH+AA++G
Sbjct: 60  DVNAK------DKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG 112

Query: 305 NWNIVSFILK 314
           +  +V  +L+
Sbjct: 113 HLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.4 bits (161), Expect = 2e-13
 Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 60/171 (35%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY---QTPLSIAIDARLNDSACFIIDK 178
           G TPLH A  N H  V+++L+E  +     +N      +TPL +A               
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLA--------------- 42

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
              + N                   +  +VK+L   G +    D+       PLH AA +
Sbjct: 43  ---ARN------------------GHLEVVKLLLEAGADVNAKDKNGR---TPLHLAARN 78

Query: 236 GNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           G++++ + LLE      +K      D NG TPLHLAA NG L+V+KLL+  
Sbjct: 79  GHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.0 bits (108), Expect = 3e-06
 Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 68/179 (37%)

Query: 77  ETPLHIAARIGNRAIVSEIVKY---VPA-VNQAGPLPVLESLFRMRDIEGNTPLHNAVTN 132
            TPLH+AAR G+     E+VK      A VN               D  G TPLH A  N
Sbjct: 3   RTPLHLAARNGHL----EVVKLLLEAGADVNAK-------------DKNGRTPLHLAARN 45

Query: 133 QHKRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPD 190
            H  V+++L+E   D      +N                       DK           +
Sbjct: 46  GHLEVVKLLLEAGAD------VNAK---------------------DK-----------N 67

Query: 191 ELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
             T LH      + ++ VK+L   G +    D+       PLH AA +G++++ + LLE
Sbjct: 68  GRTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGR---TPLHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.0 bits (108), Expect = 4e-06
 Identities = 42/143 (29%), Positives = 59/143 (41%), Gaps = 49/143 (34%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ---KNLMDE---TPLHIAARIG 87
           G T LH+A R  + +V++                LL      N  D+   TPLH+AAR G
Sbjct: 2   GRTPLHLAARNGHLEVVK---------------LLLEAGADVNAKDKNGRTPLHLAARNG 46

Query: 88  NRAIVSEIVKY---VPA-VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVE 143
           +     E+VK      A VN               D  G TPLH A  N H  V+++L+E
Sbjct: 47  HL----EVVKLLLEAGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 144 KDSVPSSYINKA---YQTPLSIA 163
                 + +N      +TPL +A
Sbjct: 90  AG----ADVNAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 13/73 (17%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
           K+    TPLH+AAR G+  +V  +++    VN               D  G TPLH A  
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-------------DKNGRTPLHLAAR 110

Query: 132 NQHKRVIRILVEK 144
           N H  V+++L+E 
Sbjct: 111 NGHLEVVKLLLEA 123

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 90.1 bits (225), Expect = 2e-21
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 27/172 (15%)

Query: 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGK 271
           L +  D + R PL  A   G      +L+E     E K      D  G T L  A +N +
Sbjct: 27  LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK------DIEGSTALIWAVKNNR 80

Query: 272 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGN 330
           L + + L++K  + +  +D S ++ L  +   G   +  F +         +N  +  G 
Sbjct: 81  LGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN----VNDRNLEGE 135

Query: 331 TPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR--------SARNNIALEIAEI 374
           TPL +A+    S++V  L      +I A++         +       E+ +I
Sbjct: 136 TPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGR-QEVIKI 185

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.6 bits (221), Expect = 8e-21
 Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 66/236 (27%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
           D  G             + +  L         Y +   +TPL +A               
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRN-------YRDSYNRTPLMVAC-------------- 43

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
                                     +  +  L         ++  D      L +A  +
Sbjct: 44  ----------------------MLGMENAIDKLVENFDK---LEDKDIEGSTALIWAVKN 78

Query: 236 GNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD 290
             + +A++LL       +K      D +G+TPL  +   G  ++   L+    + +  R+
Sbjct: 79  NRLGIAEKLLSKGSNVNTK------DFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRN 131

Query: 291 NSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
               + L VA+K+G   IV   +    +    I+  D  G T    A +    +V+
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELGAD----ISARDLTGLTAEASARIFGRQEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 87.4 bits (218), Expect = 2e-20
 Identities = 44/241 (18%), Positives = 70/241 (29%), Gaps = 74/241 (30%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
           E    I         +                   + L   RD    TPL  A     + 
Sbjct: 9   EIVEKIKDEKSINQNL-------------------DFLRNYRDSYNRTPLMVACMLGMEN 49

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
            I  LVE        +                        D            +  T L 
Sbjct: 50  AIDKLVENFD----KLEDK---------------------DI-----------EGSTALI 73

Query: 197 FVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ES 248
           + V      I  + L   G+N    D        PL ++   G  +M+  LLE       
Sbjct: 74  WAVKNNRLGI-AEKLLSKGSNVNTKDFSGK---TPLMWSIIFGYSEMSYFLLEHGANVND 129

Query: 249 KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 308
           +      +  GETPL +A++ G+ +++K L+    D I  RD +  +    A   G   +
Sbjct: 130 R------NLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEV 182

Query: 309 V 309
           +
Sbjct: 183 I 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 84.7 bits (211), Expect = 2e-19
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 23/163 (14%)

Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
           +D +              +    L          RD    TPL +A   G    +  L+ 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 281 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMG 339
            +   +E +D    + L  A K+    I    + K       +N  D +G TPL  + + 
Sbjct: 57  NFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN----VNTKDFSGKTPLMWSIIF 111

Query: 340 LHSDVVFTLSRHKSVNIRAKNRS--------ARNNIALEIAEI 374
            +S++ + L  H   N+  +N          ++     EI + 
Sbjct: 112 GYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYG-RSEIVKK 152

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.1 bits (186), Expect = 4e-16
 Identities = 41/258 (15%), Positives = 75/258 (29%), Gaps = 90/258 (34%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G  V  +       Q +                 L   ++  + TPL +A  +G      
Sbjct: 8   GEIVEKIKDEKSINQNLD---------------FLRNYRDSYNRTPLMVACMLGME---- 48

Query: 94  EIVKYVPA----VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149
             +  +      +               +DIEG+T L  AV N    +   L+ K     
Sbjct: 49  NAIDKLVENFDKLED-------------KDIEGSTALIWAVKNNRLGIAEKLLSKG---- 91

Query: 150 SYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVK 209
              N          ++ +         D               T L + ++    ++   
Sbjct: 92  --SN----------VNTK---------DF-----------SGKTPLMWSIIFGYSEM-SY 118

Query: 210 IL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGET 261
            L   G N    +        PL  A+  G  ++ ++LLE      ++      D  G T
Sbjct: 119 FLLEHGANVNDRNLEGE---TPLIVASKYGRSEIVKKLLELGADISAR------DLTGLT 169

Query: 262 PLHLAAENGKLKVLKLLI 279
               A   G+ +V+K+  
Sbjct: 170 AEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 33/216 (15%), Positives = 60/216 (27%), Gaps = 65/216 (30%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
             T L +A     +  I + L     +    ++  L  K++   T L  A +     I  
Sbjct: 35  NRTPLMVACMLGMENAI-DKL-----VE---NFDKLEDKDIEGSTALIWAVKNNRLGIAE 85

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
           +++     VN              +D  G TPL  ++   +  +   L+E         N
Sbjct: 86  KLLSKGSNVNT-------------KDFSGKTPLMWSIIFGYSEMSYFLLEHG------AN 126

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL-- 211
                     ++ R         +            +  T L         +I VK L  
Sbjct: 127 ----------VNDR---------NL-----------EGETPLIVASKYGRSEI-VKKLLE 155

Query: 212 -GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
            G +    D            A   G  ++ +   E
Sbjct: 156 LGADISARDLTGL---TAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 19/95 (20%)

Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
             D +   +  +  +      +         + L N  D    TPL +A M    + +  
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNL---------DFLRNYRDSYNRTPLMVACMLGMENAIDK 53

Query: 348 LSRHKSVNIRAKNRS--------ARNNIALEIAEI 374
           L  +    +  K+           +NN  L IAE 
Sbjct: 54  LVENF-DKLEDKDIEGSTALIWAVKNNR-LGIAEK 86

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.3 bits (223), Expect = 2e-21
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 24/165 (14%)

Query: 190 DELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           D    L         D  V+IL   G +   ++  D     PLH AA +G++++ + LL+
Sbjct: 13  DLGKKLLEAARAGRDDE-VRILMANGAD---VNAEDASGWTPLHLAAFNGHLEIVEVLLK 68

Query: 247 -----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA 301
                 +       D  G TPL LAA  G L+++++L+    D +   D    + LH+AA
Sbjct: 69  NGADVNAV------DHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAA 121

Query: 302 KHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
             G+  IV   +    +    +N  D+ G T   ++    + D+ 
Sbjct: 122 MFGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISIDNGNEDLA 162

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 87.0 bits (217), Expect = 1e-20
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 37/166 (22%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
            L  AA +G     + L+       ++      D +G TPLHLAA NG L+++++L+   
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAE------DASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 283 PDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPLHLA 336
            D +   D++  + L +AA  G+  IV         E L+      N  D  G+TPLHLA
Sbjct: 71  AD-VNAVDHAGMTPLRLAALFGHLEIV---------EVLLKNGADVNANDMEGHTPLHLA 120

Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNR--------SARNNIALEIAEI 374
           AM  H ++V  L ++   ++ A+++        S  N    ++AEI
Sbjct: 121 AMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNG-NEDLAEI 164

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 79.3 bits (197), Expect = 9e-18
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 55/201 (27%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE 181
               L  A        +RIL+   +     +N                       D    
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGA----DVNAE---------------------DA--- 45

Query: 182 SLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNV 238
                      T LH      + +I V++L   G +   ++ +D     PL  AA  G++
Sbjct: 46  --------SGWTPLHLAAFNGHLEI-VEVLLKNGAD---VNAVDHAGMTPLRLAALFGHL 93

Query: 239 KMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD 293
           ++ + LL+      +       D  G TPLHLAA  G L+++++L+    D +  +D   
Sbjct: 94  EIVEVLLKNGADVNAN------DMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFG 146

Query: 294 RSILHVAAKHGNWNIVSFILK 314
           ++   ++  +GN ++   + K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 73.6 bits (182), Expect = 9e-16
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 16/128 (12%)

Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILK 314
             +    L  AA  G+   +++L+    D +   D S  + LH+AA +G+  IV   +  
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS--------ARNN 366
             +    +N VD  G TPL LAA+  H ++V  L ++   ++ A +          A   
Sbjct: 70  GAD----VNAVDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFG 124

Query: 367 IALEIAEI 374
             LEI E+
Sbjct: 125 -HLEIVEV 131

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.9 bits (175), Expect = 9e-15
 Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 67/212 (31%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
             L  AAR G    V  ++     VN               D  G TPLH A  N H  +
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNA-------------EDASGWTPLHLAAFNGHLEI 62

Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHF 197
           + +L++  +     +N                       D              +T L  
Sbjct: 63  VEVLLKNGA----DVNAV---------------------DH-----------AGMTPLRL 86

Query: 198 VVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESK 249
             +  + +I V++L   G +   ++  D     PLH AA  G++++ + LL+      ++
Sbjct: 87  AALFGHLEI-VEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142

Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
                 D  G+T   ++ +NG   + ++L   
Sbjct: 143 ------DKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 40/222 (18%), Positives = 67/222 (30%), Gaps = 77/222 (34%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
               L  A R      +R                L+        ++    TPLH+AA  G
Sbjct: 14  LGKKLLEAARAGRDDEVR---------------ILMANGADVNAEDASGWTPLHLAAFNG 58

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147
           +  IV  ++K    VN               D  G TPL  A    H  ++ +L++    
Sbjct: 59  HLEIVEVLLKNGADVNA-------------VDHAGMTPLRLAALFGHLEIVEVLLKNG-- 103

Query: 148 PSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIM 207
             + +N                       D            +  T LH   M  + +I 
Sbjct: 104 --ADVNAN---------------------DM-----------EGHTPLHLAAMFGHLEI- 128

Query: 208 VKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           V++L   G +    D+           +  +GN  +A+ L +
Sbjct: 129 VEVLLKNGADVNAQDKFGK---TAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 44.7 bits (107), Expect = 8e-06
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 30/116 (25%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQ----NFIALRLHYSLLRQKNLMDETPLHIAARIGNR 89
           G T L +A  F + +++ E+L +     N              ++   TPLH+AA  G+ 
Sbjct: 80  GMTPLRLAALFGHLEIV-EVLLKNGADVN------------ANDMEGHTPLHLAAMFGHL 126

Query: 90  AIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145
            IV  ++K    VN               D  G T    ++ N ++ +  IL + +
Sbjct: 127 EIVEVLLKNGADVNAQ-------------DKFGKTAFDISIDNGNEDLAEILQKLN 169

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.9 bits (219), Expect = 4e-21
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKL 277
           I  L       L  AAA G V+  ++LLE         +  G  P+ +    G  +V +L
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMM-MGSAQVAEL 62

Query: 278 LINKYPDAIEIRDNSDRSI-LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
           L+    +     D +  +  +H AA+ G  + +  +         +++ D  G  P+ LA
Sbjct: 63  LLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLH---RAGARLDVCDAWGRLPVDLA 118

Query: 337 AMGLHSDVV 345
               H D+ 
Sbjct: 119 EEQGHRDIA 127

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.5 bits (179), Expect = 1e-15
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
               + +  L  AA  G+++ ++ L+    D     +   R  + V    G+  +   +L
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLL 64

Query: 314 KSPEMEN--LINLVDRNGNT-PLHLAAMGLHSDVVFTLSRHK-SVNIRAKN 360
                 +    N  D    T P+H AA     D +  L R    +++    
Sbjct: 65  -----LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW 110

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 44/167 (26%)

Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIID 177
                +  L  A        +R L+E  + P++ +N+  + P+ + +             
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMM------------- 53

Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAA 234
                                        + ++L   G      D        P+H AA 
Sbjct: 54  ------------------------MGSAQVAELLLLHGAEPNCADPATL--TRPVHDAAR 87

Query: 235 SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
            G +     L     +L    D  G  P+ LA E G   + + L   
Sbjct: 88  EGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.4 bits (158), Expect = 8e-13
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
                L     R   +  V+ L       + L+   R P+      G+ ++A+ LL    
Sbjct: 11  SSDAGLATAAARGQVET-VRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGA 68

Query: 250 QLAYKRDCNGET-PLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 308
           +     D    T P+H AA  G L  L +L       +++ D   R  + +A + G+ +I
Sbjct: 69  EPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDI 126

Query: 309 VSFILK 314
             ++  
Sbjct: 127 ARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 26/178 (14%), Positives = 47/178 (26%), Gaps = 56/178 (31%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
                +  L  AA  G    V ++++     N               +  G  P+   + 
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPNA-------------LNRFGRRPIQVMMM 54

Query: 132 NQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191
               +V  +L+   + P+         P+  A  AR                        
Sbjct: 55  G-SAQVAELLLLHGAEPNCADPATLTRPVHDA--AREG---------------------- 89

Query: 192 LTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                        D  + +L   G     +D  D   R P+  A   G+  +A+ L  
Sbjct: 90  -----------FLDT-LVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 13/67 (19%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
            P+H AAR G    +  + +    ++               D  G  P+  A    H+ +
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLDVC-------------DAWGRLPVDLAEEQGHRDI 126

Query: 138 IRILVEK 144
            R L   
Sbjct: 127 ARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 37/137 (27%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
            +  L  A      + +R+               LL         N     P+ +    G
Sbjct: 12  SDAGLATAAARGQVETVRQ---------------LLEAGADPNALNRFGRRPIQVMMM-G 55

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNT-PLHNAVTNQHKRVIRILVEKDS 146
           +  +   ++ +    N A             D    T P+H+A        + +L    +
Sbjct: 56  SAQVAELLLLHGAEPNCA-------------DPATLTRPVHDAAREGFLDTLVVLHRAGA 102

Query: 147 VPSSYINKAYQTPLSIA 163
                 +   + P+ +A
Sbjct: 103 RLDVC-DAWGRLPVDLA 118

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.9 bits (223), Expect = 7e-21
 Identities = 48/236 (20%), Positives = 89/236 (37%), Gaps = 25/236 (10%)

Query: 71  QKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV 130
           +  + +    ++A       +   I+       +              D +  T LH A 
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADKSLATR-------------TDQDSRTALHWAC 48

Query: 131 TNQHKRVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLNDSACFIIDKSPESLNTTR 187
           +  H  ++  L++        +N       +PL IA  A  ++    ++ K        +
Sbjct: 49  SAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ 104

Query: 188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247
             +  T LH+   +  ++I   +L       D  D +    +H AAA GN+KM   LL  
Sbjct: 105 --NGCTPLHYAASKNRHEI-AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

Query: 248 SKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303
                  +D  G TPLHLA +  +++  K L+ +    I I +  +++ L VA   
Sbjct: 162 KASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.5 bits (222), Expect = 8e-21
 Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 22/206 (10%)

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
             + + +        D + + +  +K L  R D   R  LH+A ++G+ ++ + LL+   
Sbjct: 6   SNIMICNLAY-SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 247 --ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
               K      D  G +PLH+AA  G  +++K L+ K    +   + +  + LH AA   
Sbjct: 65  PVNDK------DDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKN 117

Query: 305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN--- 360
              I   +L+        +  D    T +H AA   +  +V   L    S NI+      
Sbjct: 118 RHEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174

Query: 361 --RSARNNIALEIAEITRADGKEIQK 384
               A +   +E A+     G  I  
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYI 200

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 78.4 bits (193), Expect = 6e-17
 Identities = 49/249 (19%), Positives = 97/249 (38%), Gaps = 29/249 (11%)

Query: 33  GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIV 92
               + ++A   +  ++       +  +A     SL  + +    T LH A   G+  IV
Sbjct: 6   SNIMICNLAYSGKLDELK------ERILA---DKSLATRTDQDSRTALHWACSAGHTEIV 56

Query: 93  SEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
             +++    VN              +D  G +PLH A +     +++ L+ K +  ++ +
Sbjct: 57  EFLLQLGVPVND-------------KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-V 102

Query: 153 NKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILG 212
           N+   TPL  A     ++ A  +++             + T +H    + N  + V IL 
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH--YDATAMHRAAAKGNLKM-VHILL 159

Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
             K   +  D     PLH A     V+ A+ L+ +   + Y  +   +TPL +A   G L
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAK--GGL 216

Query: 273 KVLKLLINK 281
            ++   + +
Sbjct: 217 GLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 23/154 (14%)

Query: 10  RNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL 69
             G +  +K L ++    +  +  G T LH A      ++   +L            +  
Sbjct: 82  SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---------GGANP 132

Query: 70  RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA 129
             K+  D T +H AA  GN  +V  ++ Y  + N              +D EGNTPLH A
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-------------QDTEGNTPLHLA 179

Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
              +     + LV + +      NK  +TPL +A
Sbjct: 180 CDEERVEEAKFLVTQGASIYI-ENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 17/104 (16%)

Query: 291 NSDRSILHVAAKHGNWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTL 348
            S+  I ++A       +   IL      +  L    D++  T LH A    H+++V  L
Sbjct: 5   VSNIMICNLAYSGKLDELKERIL-----ADKSLATRTDQDSRTALHWACSAGHTEIVEFL 59

Query: 349 SRHKSVNIRAKNRS--------ARNNIALEIAEITRADGKEIQK 384
            +   V +  K+ +        A      EI +     G  +  
Sbjct: 60  LQLG-VPVNDKDDAGWSPLHIAASAG-XDEIVKALLVKGAHVNA 101

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 85.9 bits (214), Expect = 1e-20
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 27/131 (20%)

Query: 226 RNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
                +A  +G++   +  +                  G  PLH AA+ G+L++L+ L+ 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRT------LEGGRKPLHYAADCGQLEILEFLLL 61

Query: 281 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLVDRNGNTPLH 334
           K  D I   D    + L  A   G+ + V           L+       +   +G T   
Sbjct: 62  KGAD-INAPDKHHITPLLSAVYEGHVSCVKL---------LLSKGADKTVKGPDGLTAFE 111

Query: 335 LAAMGLHSDVV 345
                    ++
Sbjct: 112 ATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 76.3 bits (189), Expect = 3e-17
 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
             +     A +NG L  +K  + K  D +       R  LH AA  G   I+ F+L    
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK-- 62

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV 345
               IN  D++  TPL  A    H   V
Sbjct: 63  -GADINAPDKHHITPLLSAVYEGHVSCV 89

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
               + +   + D  VK     G +             PLHYAA  G +++ + LL +  
Sbjct: 9   KEFMWALKNGDLDE-VKDYVAKGEDVNRTLEGGR---KPLHYAADCGQLEILEFLLLKG- 63

Query: 250 QLAYK--RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 307
             A     D +  TPL  A   G +  +KLL++K  D   ++     +            
Sbjct: 64  --ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAIKA 120

Query: 308 IV 309
           ++
Sbjct: 121 LL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 54/163 (33%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE 181
            +     A+ N     ++  V K                   ++  L             
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGE----------------DVNRTLEGG---------- 40

Query: 182 SLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNV 238
                        LH+       +I ++ L   G +   I+  D H   PL  A   G+V
Sbjct: 41  ----------RKPLHYAADCGQLEI-LEFLLLKGAD---INAPDKHHITPLLSAVYEGHV 86

Query: 239 KMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLK 276
              + LL        K        +G T            +L+
Sbjct: 87  SCVKLLLSKGADKTVK------GPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 20/90 (22%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
           +     A + G+   V + V     VN+                 G  PLH A       
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNR-------------TLEGGRKPLHYAADCGQLE 54

Query: 137 VIRILVEKDSVPSSYINKA---YQTPLSIA 163
           ++  L+ K     + IN     + TPL  A
Sbjct: 55  ILEFLLLKG----ADINAPDKHHITPLLSA 80

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.7 bits (107), Expect = 5e-06
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 43/140 (30%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ---KNLMDE---TPLHIAARIG 87
            +     A++  +   +++                + +    N   E    PLH AA  G
Sbjct: 7   CDKEFMWALKNGDLDEVKD---------------YVAKGEDVNRTLEGGRKPLHYAADCG 51

Query: 88  NRAIVSEIVKY---VPA-VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVE 143
                 EI+++     A +N               D    TPL +AV   H   +++L+ 
Sbjct: 52  Q----LEILEFLLLKGADINA-------------PDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 144 KDSVPSSYINKAYQTPLSIA 163
           K +  +        T     
Sbjct: 95  KGADKTV-KGPDGLTAFEAT 113

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.8 bits (216), Expect = 3e-20
 Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 19/128 (14%)

Query: 228 PLHYAAASGNVKMAQRLLE----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYP 283
           P   AA   + +   +LLE    ++       D NG T L   A  G  K ++LL     
Sbjct: 47  PWWTAARKADEQALSQLLEDRDVDAV------DENGRTALLFVAGLGSDKCVRLLAEAGA 100

Query: 284 DAIEIRDNSD-RSILHVAAKHGNWNIVSFILKSPEMEN--LINLVDRNGNTPLHLAAMGL 340
           D ++ RD     + LH+AA +    +V  ++     E    I + D  G T L LA   L
Sbjct: 101 D-LDHRDMRGGLTALHMAAGYVRPEVVEALV-----ELGADIEVEDERGLTALELAREIL 154

Query: 341 HSDVVFTL 348
            +      
Sbjct: 155 KTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 82.2 bits (204), Expect = 1e-18
 Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 46/196 (23%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
           EG         + H            D      +   Y+TP   A  AR  D        
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAAD------VVSEYETPWWTA--ARKAD-------- 56

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV 238
                          LL                  +   +D +D + R  L + A  G+ 
Sbjct: 57  ----EQALSQ-----LLE---------------DRD---VDAVDENGRTALLFVAGLGSD 89

Query: 239 KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILH 298
           K  + L E    L ++    G T LH+AA   + +V++ L+    D IE+ D    + L 
Sbjct: 90  KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALE 148

Query: 299 VAAKHGNWNIVSFILK 314
           +A +          ++
Sbjct: 149 LAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.2 bits (191), Expect = 6e-17
 Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 24/158 (15%)

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-I 286
                   G+          +  +        ETP   AA     + L  L+    D  +
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE---DRDV 69

Query: 287 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN--LINLVD-RNGNTPLHLAAMGLHSD 343
           +  D + R+ L   A  G+   V  +      E    ++  D R G T LH+AA  +  +
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLLA-----EAGADLDHRDMRGGLTALHMAAGYVRPE 124

Query: 344 VVFTLSRHKSVNIRAKNRS-------ARNNIALEIAEI 374
           VV  L      +I  ++         AR  +       
Sbjct: 125 VVEALVELG-ADIEVEDERGLTALELAREILKTTPKGN 161

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.0 bits (175), Expect = 1e-14
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 246 EESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 305
           E +K +  +    G     +  ++G             D      +   +    AA+  +
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKAD 56

Query: 306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 361
              +S +L+  +    ++ VD NG T L   A       V  L+     ++  ++ 
Sbjct: 57  EQALSQLLEDRD----VDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDM 107

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.4 bits (163), Expect = 5e-13
 Identities = 37/214 (17%), Positives = 59/214 (27%), Gaps = 74/214 (34%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI--EGNTPLHNAVTNQHK 135
               I  + G+                      + S +   D+  E  TP   A     +
Sbjct: 16  MEYLIEWKDGHSPSW------------------VPSSYIAADVVSEYETPWWTAARKADE 57

Query: 136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLL 195
           + +  L+E                    +DA          D+           +  T L
Sbjct: 58  QALSQLLED-----------------RDVDAV---------DE-----------NGRTAL 80

Query: 196 HFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----E 247
            FV      D  V++L   G + +  D         LH AA     ++ + L+E     E
Sbjct: 81  LFVA-GLGSDKCVRLLAEAGADLDHRDMRG--GLTALHMAAGYVRPEVVEALVELGADIE 137

Query: 248 SKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
            +      D  G T L LA E  K       +  
Sbjct: 138 VE------DERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 33/209 (15%), Positives = 53/209 (25%), Gaps = 74/209 (35%)

Query: 76  DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHK 135
            ETP   AAR  +   +S++++    V+               D  G T L         
Sbjct: 44  YETPWWTAARKADEQALSQLLEDR-DVDA-------------VDENGRTALLFVAGLGSD 89

Query: 136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLL 195
           + +R+L E                    +D R                        LT L
Sbjct: 90  KCVRLLAEAG----------------ADLDHRDMR-------------------GGLTAL 114

Query: 196 HFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252
           H        ++ V+ L   G + E+ D         L  A                    
Sbjct: 115 HMAAGYVRPEV-VEALVELGADIEVEDE---RGLTALELAREILKTTPK----------- 159

Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINK 281
                    P+      G  KV+ +L  +
Sbjct: 160 -------GNPMQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 35/136 (25%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
             T    A R  ++Q + ++L  ++  A           +    T L   A +G+   V 
Sbjct: 44  YETPWWTAARKADEQALSQLLEDRDVDA----------VDENGRTALLFVAGLGSDKCVR 93

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIE-GNTPLHNAVTNQHKRVIRILVEK--DSVPSS 150
            + +    ++              RD+  G T LH A       V+  LVE   D     
Sbjct: 94  LLAEAGADLDH-------------RDMRGGLTALHMAAGYVRPEVVEALVELGAD----- 135

Query: 151 YINKAY---QTPLSIA 163
            I        T L +A
Sbjct: 136 -IEVEDERGLTALELA 150

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 86.3 bits (214), Expect = 4e-20
 Identities = 22/193 (11%), Positives = 56/193 (29%), Gaps = 33/193 (17%)

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYA----AASGNVKMAQRLL 245
            E   +    M   Y+  +++     E  +     + N L+            K++  L+
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKE--SVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 246 E-----ESKQLAYKRDCNGETPLHLAAENGKLKV------LKLLINKYPDAIEIRDNSDR 294
                 +S+         G T      + G   +       K+ + K  D I       +
Sbjct: 63  NKGADIKSR------TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYK 115

Query: 295 SILHVAAKHGNWN------IVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
            ++     +   +      +   I     ++  + + D+ G T L           +  +
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ--LLIKDKWGLTALEFVKRCQKPIALKMM 173

Query: 349 SRHKS-VNIRAKN 360
             +    N++  +
Sbjct: 174 EDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 29/233 (12%), Positives = 58/233 (24%), Gaps = 61/233 (26%)

Query: 73  NLMDE-TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
           N M E   +  AA +G      E+ +      +            ++       L N   
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKE----------SVLKSNILYDVLRNNND 51

Query: 132 NQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191
               ++   L+ K                     A +         K           + 
Sbjct: 52  EARYKISMFLINKG--------------------ADIK-----SRTK-----------EG 75

Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDR------LDWHQRNPLHYAAASGNVKMAQRLL 245
            TL   +      DI        K  +++      L    +  +     +  V   + + 
Sbjct: 76  TTLFFPLFQGGGNDI-TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIP 134

Query: 246 EESKQLAYK------RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS 292
                 +        +D  G T L       K   LK++ +       +++NS
Sbjct: 135 LYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK-YNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 12/117 (10%), Positives = 28/117 (23%), Gaps = 21/117 (17%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
           G T+     +     +       +           L +           +  +       
Sbjct: 75  GTTLFFPLFQGGGNDITGTTELCK---------IFLEKGADITALYKPYKIVVFKNIFNY 125

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
                  I  Y    +Q+G          ++D  G T L      Q    ++++ + 
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQL------LIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 18/192 (9%), Positives = 45/192 (23%), Gaps = 43/192 (22%)

Query: 5   LLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRL 64
           +      G      +L   +      S   + +L+  +R  N +   +I           
Sbjct: 10  VSAAAMLGTYEDFLEL-FEKGYEDKESVLKSNILYDVLRNNNDEARYKISM--------- 59

Query: 65  HYSLLRQ------KNLMDETPLHIAARIGNRAIVS--EIVKYVPA----VNQAGPLPVLE 112
              L+ +      +     T      + G   I    E+ K        +          
Sbjct: 60  --FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA-------- 109

Query: 113 SLFRMRDIEGNTPLHNAVTNQHK------RVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166
                        +   + N          + +++  +  +     +K   T L      
Sbjct: 110 -----LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

Query: 167 RLNDSACFIIDK 178
           +   +   + D 
Sbjct: 165 QKPIALKMMEDY 176

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 7/110 (6%)

Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF 311
                 +G TPLH AA+NG  + +K L++K  D +  R     + LH+AAK+G+  IV  
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 312 -ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
            + K  +    +N   ++GNTP HLA    H ++V  L      ++ A++
Sbjct: 61  LLAKGAD----VNARSKDGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARS 105

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.7 bits (198), Expect = 2e-18
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 17/113 (15%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
           PLH AA +G+ +  ++LL       ++        +G TPLHLAA+NG  +++KLL+ K 
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNAR------SKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 283 PDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLVDRNGNTPLH 334
            D +  R     +  H+A K+G+  IV     K  +    +N      +   H
Sbjct: 66  AD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD----VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.8 bits (154), Expect = 2e-12
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 13/114 (11%)

Query: 190 DELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           D  T LH    +  +   VK L   G +   ++        PLH AA +G+ ++ + LL 
Sbjct: 8   DGNTPLHNAA-KNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63

Query: 247 ESKQLAYK--RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILH 298
              + A    R  +G TP HLA +NG  +++KLL  K  D +  R        H
Sbjct: 64  ---KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.7 bits (107), Expect = 3e-06
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 34/117 (29%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
           GNT LH A +  + + +++               LL +      ++    TPLH+AA+ G
Sbjct: 9   GNTPLHNAAKNGHAEEVKK---------------LLSKGADVNARSKDGNTPLHLAAKNG 53

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
           +  IV  ++     VN              R  +GNTP H A  N H  ++++L  K
Sbjct: 54  HAEIVKLLLAKGADVNA-------------RSKDGNTPEHLAKKNGHHEIVKLLDAK 97

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 64/159 (40%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEK--DSVPSSYINKA---YQTPLSIAIDARLNDSAC 173
             +GNTPLHNA  N H   ++ L+ K  D      +N       TPL +A          
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPLHLA---------- 49

Query: 174 FIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLH 230
                   + N                   +  +VK+L   G +     +       P H
Sbjct: 50  --------AKN------------------GHAEIVKLLLAKGADVNARSKDGN---TPEH 80

Query: 231 YAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLH 264
            A  +G+ ++ + L        ++              H
Sbjct: 81  LAKKNGHHEIVKLLDAKGADVNAR------SWGSSHHHH 113

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 84.1 bits (208), Expect = 1e-18
 Identities = 47/242 (19%), Positives = 76/242 (31%), Gaps = 49/242 (20%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYV--PAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH 134
           +T L  A  +   A  ++ +  +   A         + S FR     G T LH A+  + 
Sbjct: 47  KTCLPKAL-LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

Query: 135 KRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTL 194
           K  + +LVEK +                 + A+         D+                
Sbjct: 106 KHYVELLVEKGA----------------DVHAQARGRFFQPKDEGGYFY------FGELP 143

Query: 195 LHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGN---------VKMAQ 242
           L          I V  L   G  +  + R D      LH   A  +          KM  
Sbjct: 144 LSLAACTNQPHI-VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 243 RLLE------ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSI 296
            LL           L    + +G +PL +AA+ GK+ + + +I +     EI D +    
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-----EIADAAAHHH 257

Query: 297 LH 298
            H
Sbjct: 258 HH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 84.1 bits (208), Expect = 1e-18
 Identities = 40/319 (12%), Positives = 76/319 (23%), Gaps = 110/319 (34%)

Query: 76  DETPLHIAARIGNRAIVSEIVKY-------VPAVNQAGPLPVLESLFRMRDIEGNTPLHN 128
           +   L      G+   +  ++ +       +                      G T L  
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFR------------EPSTGKTCLPK 52

Query: 129 AVTNQ---HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNT 185
           A+ N        I IL                    + I  +  +   FI          
Sbjct: 53  ALLNLSAGRNDTIPIL--------------------LDIAEKTGNMREFINSP------- 85

Query: 186 TRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
                                              + +  +  LH A         + L+
Sbjct: 86  --------------------------------FRDVYYRGQTALHIAIERRCKHYVELLV 113

Query: 246 E-------------ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA--IEIRD 290
           E                +        GE PL LAA   +  ++  L         +  +D
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD 173

Query: 291 NSDRSILHVAAKHGN---------WNIVSFIL----KSPEMENLINLVDRNGNTPLHLAA 337
           +   ++LH      +           +   +L    K     NL  L++ +G +PL +AA
Sbjct: 174 SRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233

Query: 338 MGLHSDVVFTL-SRHKSVN 355
                 +   +  R  +  
Sbjct: 234 KTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 81.0 bits (200), Expect = 2e-17
 Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 45/218 (20%)

Query: 193 TLLHFVVMR---QNYDIMVKILGTNKELIDRLDWHQRN----PLHYAA---ASGNVKMAQ 242
            +L  +V R      + ++  L T+K+ +   ++ + +     L  A    ++G      
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 243 RLLEESKQLAYK----------RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS 292
            LL+ +++                  G+T LH+A E      ++LL+ K  D +  +   
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARG 125

Query: 293 DRSI--------------LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
                             L +AA     +IV ++ ++   +  +   D  GNT LH    
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185

Query: 339 GLHSDVVFT----------LSRHKSVNIRAKNRSARNN 366
              +    T          L +   +       +  NN
Sbjct: 186 IADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN 223

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.2 bits (194), Expect = 3e-18
 Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
           NG TPLHLAA NG L+V+KLL+    D +  +D + R+ LH+AA++G+  +V  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV 345
               +N  D+NG TPLHLAA   H +VV
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVV 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 69.7 bits (172), Expect = 3e-15
 Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 12/89 (13%)

Query: 226 RNPLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
           R PLH AA +G++++ + LLE      +K      D NG TPLHLAA NG L+V+KLL+ 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 281 KYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
              D +  +D + R+ LH+AA++G+  +V
Sbjct: 57  AGAD-VNAKDKNGRTPLHLAARNGHLEVV 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.6 bits (138), Expect = 1e-10
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 12/94 (12%)

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           T LH      + ++ VK+L   G +   ++  D + R PLH AA +G++++ + LLE   
Sbjct: 4   TPLHLAARNGHLEV-VKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLE--- 56

Query: 250 QLAYK--RDCNGETPLHLAAENGKLKVLKLLINK 281
             A    +D NG TPLHLAA NG L+V+KLL+  
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 34/117 (29%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ------KNLMDETPLHIAARIG 87
           G T LH+A R  + +V++                LL        K+    TPLH+AAR G
Sbjct: 2   GRTPLHLAARNGHLEVVKL---------------LLEAGADVNAKDKNGRTPLHLAARNG 46

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
           +  +V  +++    VN               D  G TPLH A  N H  V+++L+E 
Sbjct: 47  HLEVVKLLLEAGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA 90

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 12/160 (7%)

Query: 208 VKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLH 264
           ++ +     +     R   +    L  AA +G +++ Q+ ++E    +   +  G T LH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALH 59

Query: 265 LAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 324
            A       ++  LI    + +   D+   + LH AA   +  I   ++   +    I  
Sbjct: 60  NAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALV---QHGAAIFA 115

Query: 325 VDRN-GNTPLHLAAMGL--HSDVV-FTLSRHKSVNIRAKN 360
              + G T           ++D   +     +S+ +    
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG 155

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 32/232 (13%), Positives = 65/232 (28%), Gaps = 50/232 (21%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
            +     L +A       V++  V++ +      ++                      ++
Sbjct: 18  RLNPLVLLLDAALTGELEVVQQAVKEMN----DPSQP---------------------NE 52

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
                      + +T LH  +   NY I V  L   G N   ++  D H   PLH AA+ 
Sbjct: 53  -----------EGITALHNAICGANYSI-VDFLITAGAN---VNSPDSHGWTPLHCAASC 97

Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAA--ENGKLKVLKLLINKYPDAIEIRDNSD 293
            +  +   L++    +      +G T          G       L +     + + ++  
Sbjct: 98  NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGA 156

Query: 294 RSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
              L   +            +   +   +   D    T    AA+      V
Sbjct: 157 VYALWDYSAEFG--DELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 11/174 (6%)

Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           + L LL    +    ++ V+          + +      LH A    N  +   L+    
Sbjct: 20  NPLVLLLDAALTGELEV-VQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD-RSILHVAA--KHGNW 306
            +    D +G TPLH AA      +   L+      I     SD  +        + G  
Sbjct: 79  NVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYA 136

Query: 307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
           +  +++      ++ + L++      L   +     ++ F     +SV +  ++
Sbjct: 137 DCATYLAD--VEQS-MGLMNSGAVYALWDYSAEFGDELSFREG--ESVTVLRRD 185

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 18/139 (12%)

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
           +   N    L  AA  G+L+V++  + +  D     +    + LH A    N++IV F  
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDF-- 72

Query: 314 KSPEMENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNI 367
                  LI      N  D +G TPLH AA    + +   L +H    I A   S     
Sbjct: 73  -------LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDG-AT 123

Query: 368 ALEIAEITRADGKEIQKHL 386
           A E  +  R    +   +L
Sbjct: 124 AFEKCDPYREGYADCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 26/227 (11%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
              L  AA  G   +V + VK +   +Q              + EG T LHNA+   +  
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDPSQP-------------NEEGITALHNAICGANYS 68

Query: 137 VIRILVEKDSVPSSYINKAY---QTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELT 193
           ++  L+   +     +N       TPL  A           ++      +  T L D  T
Sbjct: 69  IVDFLITAGA----NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGAT 123

Query: 194 LLHF-VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252
                   R+ Y      L   ++ +  ++      L   +A    +++    E      
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS--FREGESVTV 181

Query: 253 YKRDCNGETPLHLAAENGKLK-VLKLLINKYPDAIEIRDNSDRSILH 298
            +RD   ET    AA +G+   V +     +P  ++ + +  +   H
Sbjct: 182 LRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR-VKPQRSKVKHHHH 227

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.4 bits (193), Expect = 3e-16
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 6/162 (3%)

Query: 216 ELIDRLDWHQRNPLHYAAASGNVKMAQ--RLLEESKQLAYKRDCNGETPLHLAAENGKLK 273
               +           AA +G         LL  S ++             LAAENG L 
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 142

Query: 274 VLKLLINKYPDA-IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTP 332
           VL  L    P   + +    +     +AA++G+ ++++ + +    E     +       
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM-IQAENYYA 201

Query: 333 LHLAAMGL-HSDVVFTLSRHKSVNIRAKNRSARNNIALEIAE 373
              AA+G  H +V+  L     V +              +  
Sbjct: 202 FRWAAVGRGHHNVINFLLDC-PVMLAYAEIHEFEYGEKYVNP 242

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 9/161 (5%)

Query: 215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK--- 271
              +      ++          +     + L      A+K+    E    +AA  G    
Sbjct: 51  HIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWS---DAHKKGIKSEVICFVAAITGCSSA 107

Query: 272 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNT 331
           L  L LL+      +++    +     +AA++G+ ++++ + +    E +   +      
Sbjct: 108 LDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM-IQAENYH 165

Query: 332 PLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIA 372
              LAA   H  V+  L              A N  A   A
Sbjct: 166 AFRLAAENGHLHVLNRLCELAP-TEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 35/291 (12%), Positives = 71/291 (24%), Gaps = 54/291 (18%)

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
               +     +AA  G+  +++ + +  P    A           M   E       A  
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA-----------MIQAENYHAFRLAAE 172

Query: 132 NQHKRVIRILVEKDSVPSS-YINKAYQTPLSIAIDARLN---DSACFIIDKSPESLNTTR 187
           N H  V+  L E     ++  I          A  A      +   F++D          
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWA--AVGRGHHNVINFLLDCPVMLAYAEI 230

Query: 188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247
              E       V           +  +   +  +     +    +   G   +  +    
Sbjct: 231 --HEFEYGEKYV--------NPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTK---- 272

Query: 248 SKQLAYKRDCNGETPLHLAAENGK---LKVLKLLIN----KYPDAIEIRDNSDRSILHVA 300
                      G   L           L  ++ L++    K              +L +A
Sbjct: 273 ------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326

Query: 301 AKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            + GN    + +L  P       ++        ++   G   D+      H
Sbjct: 327 LRLGNQGACALLLSIPS------VLALTKANNYYINETGGRLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 36/318 (11%), Positives = 91/318 (28%), Gaps = 41/318 (12%)

Query: 66  YSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTP 125
           +S   +K +  E    +AA  G  + + + +           L   + + ++   E    
Sbjct: 82  WSDAHKKGIKSEVICFVAAITGCSSAL-DTLCL---------LLTSDEIVKVIQAENYQA 131

Query: 126 LHNAVTNQHKRVIRILVEK-DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLN 184
              A  N H  V+  L E   +   + I         +A +         + + +P    
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 185 TTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
                +      +  + + +  ++  L     ++   + H           G   +   +
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH-------EFEYGEKYVNPFI 244

Query: 245 LEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
                 +   ++ +      L+  +G   ++                    +L    +  
Sbjct: 245 AR---HVNRLKEMH--DAFKLSNPDGVFDLVTKSECL----------QGFYMLRNLIRRN 289

Query: 305 NWNI---VSFILKSPEMENL--INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK 359
           +  +   + F+L  P ++ L     +  + N  L LA    +      L    SV    K
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349

Query: 360 NRS---ARNNIALEIAEI 374
             +         L++  +
Sbjct: 350 ANNYYINETGGRLDLRAV 367

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 71.3 bits (176), Expect = 3e-15
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSP 316
           +    L  AA  G+   +++L+    D +  +D    + L++A  HG+  IV   +    
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR--------SARNNIA 368
           +    +N VD  G TPLHLAA   H ++   L +H   ++ A+++        S  N   
Sbjct: 72  D----VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNG-N 125

Query: 369 LEIAEI 374
            ++AEI
Sbjct: 126 EDLAEI 131

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.2 bits (168), Expect = 4e-14
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 19/130 (14%)

Query: 193 TLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
             L     R   D  V+IL   G +   ++  D +   PL+ A A G++++ + LL+   
Sbjct: 16  KKLLEAA-RAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 247 --ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
              +       D  G TPLHLAA  G L++ ++L+    D +  +D   ++   ++  +G
Sbjct: 72  DVNAV------DAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNG 124

Query: 305 NWNIVSFILK 314
           N ++   + K
Sbjct: 125 NEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 22/111 (19%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
               L  A R      +  IL     +A   + + +  K+    TPL++A   G+  IV 
Sbjct: 14  LGKKLLEAARAGQDDEV-RIL-----MA---NGADVNAKDEYGLTPLYLATAHGHLEIVE 64

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
            ++K    VN               D  G TPLH A    H  +  +L++ 
Sbjct: 65  VLLKNGADVNA-------------VDAIGFTPLHLAAFIGHLEIAEVLLKH 102

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 30/116 (25%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQ----NFIALRLHYSLLRQKNLMDETPLHIAARIGNR 89
           G T L++A    + +++ E+L +     N              + +  TPLH+AA IG+ 
Sbjct: 47  GLTPLYLATAHGHLEIV-EVLLKNGADVN------------AVDAIGFTPLHLAAFIGHL 93

Query: 90  AIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145
            I   ++K+   VN              +D  G T    ++ N ++ +  IL + +
Sbjct: 94  EIAEVLLKHGADVNA-------------QDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 64/176 (36%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPA----VNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ 133
             L  AAR G      + V+ + A    VN              +D  G TPL+ A  + 
Sbjct: 16  KKLLEAARAGQD----DEVRILMANGADVNA-------------KDEYGLTPLYLATAHG 58

Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELT 193
           H  ++ +L++      + +N                       D               T
Sbjct: 59  HLEIVEVLLKNG----ADVNAV---------------------DA-----------IGFT 82

Query: 194 LLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
            LH      + +I  ++L   G +   ++  D   +     +  +GN  +A+ L +
Sbjct: 83  PLHLAAFIGHLEI-AEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
            L  AA +G     + L+       +K      D NG TPLHLAA NG L+V+KLL+   
Sbjct: 27  KLLEAARAGQDDEVRILMANGADVAAK------DKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 283 PDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
            D +  +D   ++   ++  +GN ++   +
Sbjct: 81  AD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 21/117 (17%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
            ++  +   +  L+      ++    +    L  AA  G+   +++L+    D +  +D 
Sbjct: 1   GSSHHHHHHSSGLVPRG---SHM-GSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDK 55

Query: 292 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
           +  + LH+AA++G+  +V  +L   E    +   D+ G T   ++    + D+   L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLL---EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 76  DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHK 135
               L  AAR G    V  ++     V               +D  G+TPLH A  N H 
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADVAA-------------KDKNGSTPLHLAARNGHL 70

Query: 136 RVIRILVEK 144
            V+++L+E 
Sbjct: 71  EVVKLLLEA 79

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 190 DELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           D    L         D  V+IL   G +   +   D +   PLH AA +G++++ + LLE
Sbjct: 23  DLGKKLLEAARAGQDDE-VRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 247 ESKQLA--YKRDCNGETPLHLAAENGKLKVLKLL 278
                A    +D  G+T   ++ +NG   + ++L
Sbjct: 79  ---AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 2e-11
 Identities = 77/518 (14%), Positives = 148/518 (28%), Gaps = 171/518 (33%)

Query: 8   VLRNGDENKIKQLALRQNIFSTSSPGGNTVLH-MA------------------------- 41
           V R     K++Q AL +       P  N ++  +                          
Sbjct: 131 VSRLQPYLKLRQ-ALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 42  --VRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYV 99
             +  +N      +L     +  ++  +   + +      L I +    +A +  ++K  
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSK 241

Query: 100 PAVNQAGPLPVLESLFRMRDIEGNTPLHNA--------VTNQHKRVIRILV--------- 142
           P  N          L  + +++ N    NA        +T + K+V   L          
Sbjct: 242 PYEN---------CLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 143 ----------EKDSVPSSYINKAYQT---------PLSIA-IDARLNDSACF-------- 174
                     E  S+   Y++   Q          P  ++ I   + D            
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 175 ------IIDKSPESLNTTRLPDEL--TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQ- 225
                 II+ S   L     P E         V   +  I   +L     LI    W   
Sbjct: 352 CDKLTTIIESSLNVLE----PAEYRKMFDRLSVFPPSAHIPTILL----SLI----WFDV 399

Query: 226 --RNPLHYAAASGNVKMAQRLLEESK------QLAYKRDCNGETPLHLAAENGKLKVLKL 277
              + +          + ++  +ES        L  K     E  LH           + 
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-----------RS 448

Query: 278 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI---LKSPEMENLINL-----VD--- 326
           +++ Y +  +  D+ D    ++      +   S I   LK+ E    + L     +D   
Sbjct: 449 IVDHY-NIPKTFDSDDLIPPYL----DQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 327 -----RNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE 381
                R+ +T  +  A G   + +  L  +K   I   N      +   I +      + 
Sbjct: 503 LEQKIRHDSTAWN--ASGSILNTLQQLKFYKP-YIC-DNDPKYERLVNAILDFLPKIEEN 558

Query: 382 I--QKHLTLKALKTAYAKRALSAEE----LQQKRQVSK 413
           +   K+  L        + AL AE+     +  +QV +
Sbjct: 559 LICSKYTDL-------LRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 63/328 (19%), Positives = 113/328 (34%), Gaps = 91/328 (27%)

Query: 156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTR-------LPDEL--------TLL----- 195
           Y+  LS+  DA +++  C  +   P+S+ +           D +        TLL     
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 196 ---HFV--VMRQNYD-IMVKILGTNKE--LIDRLDWHQRNPLHYAA---ASGNVKMAQRL 244
               FV  V+R NY  +M  I    ++  ++ R+   QR+ L+      A  NV   Q  
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 245 LEESKQLAYKRDCNGETPLH---------LAAE---NGKLK------------------- 273
           L+  + L   R       +          +A +   + K++                   
Sbjct: 138 LKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 274 -VLKLLINKY----PDAIEIRDNSDRSILHV-AAKHGNWNIVSFILKSPEMEN-LINLVD 326
            VL++L        P+     D+S    L + + +      +  +LKS   EN L+ L  
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE----LRRLLKSKPYENCLLVL-- 250

Query: 327 RNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHL 386
            N        A  L   ++ T +R K V     + +   +I+L+               L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLT-TRFKQV-TDFLSAATTTHISLD----------HHSMTL 298

Query: 387 TLKALKTAYAKRA-LSAEELQQKRQVSK 413
           T   +K+   K      ++L   R+V  
Sbjct: 299 TPDEVKSLLLKYLDCRPQDL--PREVLT 324

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.6 bits (144), Expect = 3e-10
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 255 RDCNGETPLHLAAENGKLKVLKL--LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
                ET LHLA  +     L +   + +    ++ +     + LH      N   +  +
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 313 LKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
           L+       I + + +G TPL +A    H      L
Sbjct: 225 LRGK---ASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 7/152 (4%)

Query: 139 RILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFV 198
           R    K    ++    +    +       L  +    +D + +         + T LH  
Sbjct: 117 RRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA 176

Query: 199 VMR--QNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD 256
           V    +    +V  L  N   +D+        LHY   + N +  + LL   K      +
Sbjct: 177 VRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIAN 235

Query: 257 CNGETPLHLAAENGKLKVLKLLI----NKYPD 284
            +GETPL +A         +LL      ++  
Sbjct: 236 ESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 76  DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHK 135
           DET LH+A R  +R  +      V  + Q             +  +G+T LH      + 
Sbjct: 169 DETALHLAVRSVDRTSLH----IVDFLVQNSGNL------DKQTGKGSTALHYCCLTDNA 218

Query: 136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFII 176
             +++L+ +        N++ +TPL IA   +       + 
Sbjct: 219 ECLKLLL-RGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 19/116 (16%)

Query: 28  STSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIG 87
           +       T LH+AVR  ++  +  +        L  +   L ++     T LH      
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVD------FLVQNSGNLDKQTGKGSTALHYCCLTD 216

Query: 88  NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVE 143
           N   +  +++   ++                +  G TPL  A   +H+    +L +
Sbjct: 217 NAECLKLLLRGKASIEI-------------ANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
               D + LH+A +  +   +  +    +    ++     G+T LH   +  +++ +  L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 349 SRHKSVNIRAKNRSARNNIALEIA 372
            R K+ +I   N S      L+IA
Sbjct: 225 LRGKA-SIEIANES--GETPLDIA 245

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 12/130 (9%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCN-----GETPLHLAAENGK---LKVLKLL 278
             L  A  + ++          +               E  LHLA +      L ++  +
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212

Query: 279 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
           I      ++ +     + LH AA +   + +  +LK      L+  V+  G T L +A  
Sbjct: 213 IQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARK 268

Query: 339 GLHSDVVFTL 348
             H +    L
Sbjct: 269 KHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 190 DELTLLHFVVMRQNYD--IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247
            E  +LH  V   N     +V  +  N   +D         LHYAA        + LL +
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-K 247

Query: 248 SKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
            + L    +  GET L +A +    +  +LL  
Sbjct: 248 GRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.2 bits (117), Expect = 8e-07
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 224 HQRNPLHYAAASGNVK---MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
            +   LH A    N     +   +++    L   +  +G T LH AA   +   LKLL+ 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLL- 246

Query: 281 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
           K    +   + +  + L +A K  +      + ++
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 23/101 (22%)

Query: 76  DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL------FRMRDIEGNTPLHNA 129
           +E  LH+A ++ N                   LP+++ +         +  +GNT LH A
Sbjct: 190 EELVLHLAVKVAN----------------QASLPLVDFIIQNGGHLDAKAADGNTALHYA 233

Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLND 170
                   +++L+ K       +N+A +T L IA      +
Sbjct: 234 ALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKE 273

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 23/112 (20%)

Query: 34  GNTVLHMAVR--FRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAI 91
              VLH+AV+   +    + + + Q        +   L  K     T LH AA       
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQ--------NGGHLDAKAADGNTALHYAALYNQPDC 241

Query: 92  VSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVE 143
           +  ++K    V                +  G T L  A    HK    +L +
Sbjct: 242 LKLLLKGRALVG-------------TVNEAGETALDIARKKHHKECEELLEQ 280

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 226 RNPLHYAAA---SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
              LH A       ++ +   +++    L   +  +G T LH AA   +   LKLL+   
Sbjct: 172 ELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGNTALHYAALYNQPDCLKLLLKGR 230

Query: 283 PDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
              +   + +  + L +A K  +      + +
Sbjct: 231 AL-VGTVNEAGETALDIARKKHHKECEELLEQ 261

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 26/151 (17%)

Query: 27  FSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARI 86
           F+         L  A+  R+   + E           L     +      E  LH+A ++
Sbjct: 125 FARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPE---ELVLHLAVKV 181

Query: 87  GNRAIVSEIVKYVPAVNQAGPLPVLESL------FRMRDIEGNTPLHNAVTNQHKRVIRI 140
            N+                  LP+++ +         +  +GNT LH A        +++
Sbjct: 182 ANQ----------------ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 225

Query: 141 LVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
           L+ K       +N+A +T L IA      + 
Sbjct: 226 LL-KGRALVGTVNEAGETALDIARKKHHKEC 255

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 2/136 (1%)

Query: 157 QTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKE 216
                 +       +    +    +        D  T L       N  +  + L  N  
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT-AANSLLACEFLLQNGA 259

Query: 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLK 276
            +++ D   R PLH+A   G+  +A   L+    L   RD  G  PL +A E     ++ 
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVT 318

Query: 277 LLINKYPDAIEIRDNS 292
           LL        E     
Sbjct: 319 LLRLAKMREAEAAQGQ 334

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
           +  TPL  A     L   + L+      +   D++ R  LH A   G+  +    LK   
Sbjct: 234 DNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV 345
               +   D  G  PL +A    ++D+V
Sbjct: 293 D---LGARDSEGRDPLTIAMETANADIV 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
3gvo_A	351	Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom	84.08
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	80.19

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.1e-65  Score=462.80  Aligned_cols=370  Identities=26%  Similarity=0.331  Sum_probs=341.2

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      ++||.|+..|++++|++|++.|.+++..+..|.||||+|+..|+.+++++|++.         +++++.++..|.||||+
T Consensus        16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~   86 (437)
T 1n11_A           16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN---------KAKVNAKAKDDQTPLHC   86 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH---------TCCSSCCCTTSCCHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---------CCCCCCCCCCCCCHHHH
Confidence            589999999999999999999999999999999999999999999999999997         67788899999999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHH
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~  162 (415)
                      |+..|+.+++++|+++|++++             ..+..|.||||+|+..|+.+++++|++.+.+.. ..+..|.||||+
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~  152 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANPN-------------LATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHV  152 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTT-------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCCCC-------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHH
Confidence            999999999999999999877             567889999999999999999999999998775 567889999999


Q ss_pred             HHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHH
Q 042906          163 AIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ  242 (415)
Q Consensus       163 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  242 (415)
                      |+..|+.+++++|++.+.+....  +..|.|||+.|+..++.+++++|+..+.. ++..+..|.||||+|+..++.++++
T Consensus       153 A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~  229 (437)
T 1n11_A          153 AAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVAR  229 (437)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999987765443  36788999999999999999999998876 6777888999999999999999999


Q ss_pred             HHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCccccc
Q 042906          243 RLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI  322 (415)
Q Consensus       243 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  322 (415)
                      +|++.|.+.+ ..+..|.||||+|+..++.+++++|++++++ ++..+..|.||||+|+..++.+++++|+++|.+   +
T Consensus       230 ~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~  304 (437)
T 1n11_A          230 SLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---V  304 (437)
T ss_dssp             HHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---T
T ss_pred             HHHHcCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc---C
Confidence            9999999887 5788999999999999999999999999998 599999999999999999999999999999887   8


Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906          323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSA  402 (415)
Q Consensus       323 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~  402 (415)
                      +.++..|+||||+|+..|+.+++++|+++ |++++.+|..|  +||||+|++       .++.+++++|+++||+++..+
T Consensus       305 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g--~t~L~~A~~-------~g~~~iv~~Ll~~ga~~~~~~  374 (437)
T 1n11_A          305 DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLG--YSPLHQAAQ-------QGHTDIVTLLLKNGASPNEVS  374 (437)
T ss_dssp             TCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHTTCCSCCCC
T ss_pred             CCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCC--CCHHHHHHH-------CChHHHHHHHHHCcCCCCCCC
Confidence            99999999999999999999999999986 99999999999  999999999       578899999999999998888


Q ss_pred             HHHHHHHhhhh
Q 042906          403 EELQQKRQVSK  413 (415)
Q Consensus       403 ~~~~~~~~~~~  413 (415)
                      ..+.++.++++
T Consensus       375 ~~g~t~l~~A~  385 (437)
T 1n11_A          375 SDGTTPLAIAK  385 (437)
T ss_dssp             SSSCCHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            77777776654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-60  Score=435.53  Aligned_cols=353  Identities=25%  Similarity=0.322  Sum_probs=329.3

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      .++||.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.         +++++..+..|.||||
T Consensus        48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------ga~~~~~~~~g~t~L~  118 (437)
T 1n11_A           48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN---------NANPNLATTAGHTPLH  118 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH---------TCCTTCCCTTCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC---------CCCCCCCCCCCCcHHH
Confidence            3689999999999999999999999999999999999999999999999999997         5667888999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~  161 (415)
                      +|+..|+.+++++|++++++..             ..+..|.||||+|+..|+.+++++|++.|+++. ..+..|.|||+
T Consensus       119 ~A~~~g~~~~v~~Ll~~~~~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~  184 (437)
T 1n11_A          119 IAAREGHVETVLALLEKEASQA-------------CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLH  184 (437)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCc-------------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHH
Confidence            9999999999999999998765             467789999999999999999999999999876 67889999999


Q ss_pred             HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHH
Q 042906          162 IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA  241 (415)
Q Consensus       162 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  241 (415)
                      +|+..++.+++++|++.+.......  ..+.+||+.|+..++.+++++|++.+.. ++..+..|.||||+|+..|+.+++
T Consensus       185 ~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v  261 (437)
T 1n11_A          185 VAVHHNNLDIVKLLLPRGGSPHSPA--WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMV  261 (437)
T ss_dssp             HHHHTTCHHHHHHHGGGTCCSCCCC--TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999887654433  6788999999999999999999998876 788888999999999999999999


Q ss_pred             HHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccc
Q 042906          242 QRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL  321 (415)
Q Consensus       242 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~  321 (415)
                      ++|++.+++.+ ..+..|.||||+|+..++.+++++|++++++ ++.++..|+||||+|+..|+.+++++|+++|++   
T Consensus       262 ~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---  336 (437)
T 1n11_A          262 ALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---  336 (437)
T ss_dssp             HHHHTTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC---
T ss_pred             HHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCC---
Confidence            99999999887 6789999999999999999999999999999 699999999999999999999999999999988   


Q ss_pred             cccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906          322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY  395 (415)
Q Consensus       322 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G  395 (415)
                      ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.+|  +|||++|.+       .+...++++|....
T Consensus       337 ~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~g~~~~~~~l~~~~  400 (437)
T 1n11_A          337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDG--TTPLAIAKR-------LGYISVTDVLKVVT  400 (437)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSS--CCHHHHHHH-------TTCHHHHHHHHHHC
T ss_pred             CCCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCCCCC--CCHHHHHHH-------cCcHHHHHHHHhcc
Confidence            999999999999999999999999999986 99999999999  999999999       46777888887653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.5e-49  Score=347.93  Aligned_cols=302  Identities=20%  Similarity=0.196  Sum_probs=246.3

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCC-CCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchh
Q 042906           33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNL-MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVL  111 (415)
Q Consensus        33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  111 (415)
                      +|.|+||.|++.|++++|++||+.         |++++.++. .|+||||+|+..|+.++|++|+++|++++        
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~---------Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~--------   86 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEG---------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV--------   86 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH---------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHC---------CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh--------
Confidence            478999999999999999999997         566776665 58999999999999999999999999877        


Q ss_pred             hhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906          112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE  191 (415)
Q Consensus       112 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  191 (415)
                           .++..+.++++.++..+...++..++..+.++. ..+..|.||+++|+..++.++++++++.+.+.......   
T Consensus        87 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~---  157 (337)
T 4g8k_A           87 -----LRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT---  157 (337)
T ss_dssp             -----CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC---
T ss_pred             -----hhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc---
Confidence                 568899999999999999999999999998876 67889999999999999999999999887665432210   


Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHh-chhhhhccCCCCCCHHHHHHHcC
Q 042906          192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE-SKQLAYKRDCNGETPLHLAAENG  270 (415)
Q Consensus       192 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~  270 (415)
                                             .......+..|.||||+|+..|+.+++++|+++ |++++ ..+..|.|+++.++..+
T Consensus       158 -----------------------~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~  213 (337)
T 4g8k_A          158 -----------------------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSS  213 (337)
T ss_dssp             -----------------------C-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHS
T ss_pred             -----------------------ccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHc
Confidence                                   011334466788999999999999999998864 67766 57888889988877654


Q ss_pred             C----HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhC-CCcccccccCCCCCCcHHHHHHhcCChHHH
Q 042906          271 K----LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLVDRNGNTPLHLAAMGLHSDVV  345 (415)
Q Consensus       271 ~----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  345 (415)
                      .    ..++++|+++|++ ++.++..|+||||+|+..++.+++++|++. |.+   ++.+|..|+||||+|+..|+.+++
T Consensus       214 ~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---vn~~d~~G~TpL~~A~~~g~~~iv  289 (337)
T 4g8k_A          214 DDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIA  289 (337)
T ss_dssp             CTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC---TTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             CcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc---ccCcCCCCCCHHHHHHHcCCHHHH
Confidence            3    4578888999888 588888999999999999999999988876 455   888899999999999999999999


Q ss_pred             HHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHH
Q 042906          346 FTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAE  403 (415)
Q Consensus       346 ~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~  403 (415)
                      ++|+++ |+|+|     +  .|||++|++       .++.++|++|+++||++++..+
T Consensus       290 ~~Ll~~-GAd~n-----~--~~~L~~A~~-------~~~~~iv~~Ll~~GA~~d~~~p  332 (337)
T 4g8k_A          290 ELLCKR-GASTD-----C--GDLVMTARR-------NYDHSLVKVLLSHGAKEDFHPP  332 (337)
T ss_dssp             HHHHTT-SCSST-----T--CCHHHHHHH-------TTCHHHHHHHHHTTCCC-----
T ss_pred             HHHHHC-CCCCC-----C--CCHHHHHHH-------cCCHHHHHHHHHCcCCCCCCCC
Confidence            999976 88876     3  569999988       4677899999999998877543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.5e-48  Score=341.54  Aligned_cols=299  Identities=19%  Similarity=0.204  Sum_probs=259.2

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCC-CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSP-GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      ..|+.|++.|++++|+.||+.|++++..+. .|+||||+|+..|+.++|++|+++         ++.++.++..+.+|++
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~---------ga~~~~~~~~~~~~~~   97 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH---------GADPVLRKKNGATPFI   97 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTCCCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc---------CCchhhhccCCCchhH
Confidence            579999999999999999999999998875 599999999999999999999998         5677889999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~  161 (415)
                      .++..+...++..++..+++++             ..|..|.||+|+|+..|+.+++++|++.|+++... .....    
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~-------------~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~-~~~~~----  159 (337)
T 4g8k_A           98 LAAIAGSVKLLKLFLSKGADVN-------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR-RKTKE----  159 (337)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCCC-----
T ss_pred             HHHhcccchhhHHhhhccchhh-------------hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchh-hcccc----
Confidence            9999999999999999998876             57889999999999999999999999999877522 11111    


Q ss_pred             HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC----
Q 042906          162 IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN----  237 (415)
Q Consensus       162 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~----  237 (415)
                                           ........|.||||.|+..|+.+++++|++..+..++..+..|.|+++.++..+.    
T Consensus       160 ---------------------~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~  218 (337)
T 4g8k_A          160 ---------------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  218 (337)
T ss_dssp             -------------------------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred             ---------------------ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence                                 1112235678999999999999999999987666688899999999998876554    


Q ss_pred             HHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCC
Q 042906          238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK-YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP  316 (415)
Q Consensus       238 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  316 (415)
                      ..++++|+++|++++ .++..|.||||+|+..++.+++++|++. +++ ++.+|..|+||||+|++.|+.+++++|+++|
T Consensus       219 ~~i~~lLl~~gad~n-~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          219 EAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             HHHHHHHHHTTCCTT-CCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            468899999999988 6889999999999999999999999986 455 7999999999999999999999999999999


Q ss_pred             CcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccc
Q 042906          317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN  360 (415)
Q Consensus       317 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d  360 (415)
                      ++   +|.     .+|||+|+..|+.+++++||++ ||++|...
T Consensus       297 Ad---~n~-----~~~L~~A~~~~~~~iv~~Ll~~-GA~~d~~~  331 (337)
T 4g8k_A          297 AS---TDC-----GDLVMTARRNYDHSLVKVLLSH-GAKEDFHP  331 (337)
T ss_dssp             CS---STT-----CCHHHHHHHTTCHHHHHHHHHT-TCCC----
T ss_pred             CC---CCC-----CCHHHHHHHcCCHHHHHHHHHC-cCCCCCCC
Confidence            87   554     4699999999999999999986 99998753

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.3e-48  Score=341.68  Aligned_cols=319  Identities=22%  Similarity=0.268  Sum_probs=258.2

Q ss_pred             hHHHHHHHcCChhHHHHHHhh-ccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            3 QELLEVLRNGDENKIKQLALR-QNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      ++|+.|++.|+.+.+++++.. +.+++..+..|.||||+|+..|+.+++++|++.         +++++.++..|.||||
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~   96 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH---------GADVHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTCCCHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCccCCCCCcHHH
Confidence            579999999999999999886 688888999999999999999999999999997         5667888999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~  161 (415)
                      +|+..|+.+++++|+++|++++             ..+..|.||||+|+..|+.+++++|++.|+++. ..+..|.+|++
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~  162 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACVN-------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVD  162 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchH
Confidence            9999999999999999998876             567889999999999999999999999998876 67888999999


Q ss_pred             HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhc---CCH
Q 042906          162 IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS---GNV  238 (415)
Q Consensus       162 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~---~~~  238 (415)
                      +++..+..+.+.+...              ..++..++..++.+.+..++..... ....+..|.||||+|+..   +..
T Consensus       163 ~a~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~  227 (351)
T 3utm_A          163 MAPTPELRERLTYEFK--------------GHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRK  227 (351)
T ss_dssp             HCSSHHHHHHHHHHHH--------------HHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHH
T ss_pred             HHhhhhhHHHHHhhhc--------------ccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHH
Confidence            9988777777766552              2567788888888888888877654 334566788899999888   557


Q ss_pred             HHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCc
Q 042906          239 KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM  318 (415)
Q Consensus       239 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  318 (415)
                      +++++|++.|.+++ ..+..|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++
T Consensus       228 ~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          228 QVAELLLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSD  305 (351)
T ss_dssp             HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            88888888888877 5788888999999999999999999988888 588888888999999998899999999988887


Q ss_pred             ccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       319 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                         ++.+|..|+||+++|    ..+++++|.+...    ....++  .+++..|++
T Consensus       306 ---~~~~~~~g~tal~~a----~~~~~~~l~~~~~----~~~~~~--~~~l~~A~~  348 (351)
T 3utm_A          306 ---PSIISLQGFTAAQMG----NEAVQQILSESTP----MRTSDV--DYRLLEASK  348 (351)
T ss_dssp             ---TTCCCTTSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred             ---CCCcCCCCCChhhhh----hHHHHHHHHhccc----cccCcc--eeehhhhhc
Confidence               788888889988887    6677888876532    234445  677777776

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.7e-48  Score=345.29  Aligned_cols=323  Identities=19%  Similarity=0.181  Sum_probs=283.5

Q ss_pred             HHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhh
Q 042906           19 QLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKY   98 (415)
Q Consensus        19 ~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~   98 (415)
                      .++..+.+....+..+.|+||.|+..|+.+.++.|+..        .+.+++..|..|.||||+|+..|+.+++++|+++
T Consensus         9 ~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~--------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   80 (351)
T 3utm_A            9 DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP--------LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH   80 (351)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCT--------TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hccCCceeeeeeccccchhHHHHHHcCCHHHHHHHHHh--------cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            44555555666667788999999999999999999987        5788899999999999999999999999999999


Q ss_pred             ccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhh
Q 042906           99 VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK  178 (415)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  178 (415)
                      |++++             .+|..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..++.+++++|++.
T Consensus        81 g~~~~-------------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  146 (351)
T 3utm_A           81 GADVH-------------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSH  146 (351)
T ss_dssp             TCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCC-------------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99877             568899999999999999999999999999876 6788999999999999999999999999


Q ss_pred             CCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCC
Q 042906          179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCN  258 (415)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  258 (415)
                      +.+.....  ..+.++++.++..+..+.+.+...             .+++..++..+..+.++.++....... ..+..
T Consensus       147 g~~~~~~~--~~g~~~l~~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~  210 (351)
T 3utm_A          147 GADPTLVN--CHGKSAVDMAPTPELRERLTYEFK-------------GHSLLQAAREADLAKVKKTLALEIINF-KQPQS  210 (351)
T ss_dssp             TCCTTCCC--TTSCCHHHHCSSHHHHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTTC-CCTTT
T ss_pred             CCCCcccc--CCCCcchHHHhhhhhHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHHhhcccc-cCCCC
Confidence            87765443  688899999988777776665543             246788889999999999988776554 46788


Q ss_pred             CCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHH
Q 042906          259 GETPLHLAAEN---GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHL  335 (415)
Q Consensus       259 g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~  335 (415)
                      |.||||+|+..   +..+++++|++.+++ ++.++..|+||||+|+..++.+++++|+++|++   ++.+|..|+||||+
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~  286 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHR  286 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHH
Confidence            99999999999   668999999999999 699999999999999999999999999999988   99999999999999


Q ss_pred             HHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          336 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       336 A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      |+..|+.+++++|+++ |++++.+|..|  +||+++|.+           .++++|.+.+..
T Consensus       287 A~~~~~~~~v~~Ll~~-gad~~~~~~~g--~tal~~a~~-----------~~~~~l~~~~~~  334 (351)
T 3utm_A          287 AALAGHLQTCRLLLSY-GSDPSIISLQG--FTAAQMGNE-----------AVQQILSESTPM  334 (351)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHSCH-----------HHHHHHHHC---
T ss_pred             HHHcCcHHHHHHHHHc-CCCCCCcCCCC--CChhhhhhH-----------HHHHHHHhcccc
Confidence            9999999999999986 99999999999  999999976           378888877665

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.8e-46  Score=318.48  Aligned_cols=271  Identities=22%  Similarity=0.254  Sum_probs=197.3

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccC-CCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTS-SPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      +.|+.|++.|+++++++|++.|.+++.. +..|.||||+|+..|+.+++++|++.         +.+++..+..|.||||
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~   77 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH---------GADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTCCCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc---------CCCCcccCCCCCCHHH
Confidence            3455666666666666666666555554 44555666666666666666666654         3344455555566666


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~  161 (415)
                      +|+..|+.+++++|+++|++++             ..+..|.||||+|+..++.+++++|++.|+++.            
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------  132 (285)
T 1wdy_A           78 LAAIAGSVKLLKLFLSKGADVN-------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN------------  132 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC-------------ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc------------
Confidence            6666666666666666555544             345555566666666666666666665555432            


Q ss_pred             HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHH
Q 042906          162 IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA  241 (415)
Q Consensus       162 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  241 (415)
                                            .....                          .......+..|.||||.|+..++.+++
T Consensus       133 ----------------------~~~~~--------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v  164 (285)
T 1wdy_A          133 ----------------------LRRKT--------------------------KEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             ----------------------CCCCC--------------------------CHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ----------------------ccccc--------------------------HHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence                                  11100                          001233466788999999999999999


Q ss_pred             HHHHHh-chhhhhccCCCCCCHHHHHHHcCC----HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhh-C
Q 042906          242 QRLLEE-SKQLAYKRDCNGETPLHLAAENGK----LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK-S  315 (415)
Q Consensus       242 ~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~  315 (415)
                      ++|++. +.+++ ..+..|.||||+|+..++    .+++++|+++|++ ++.++..|.||||+|+..++.+++++|++ .
T Consensus       165 ~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  242 (285)
T 1wdy_A          165 KILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc
Confidence            999988 77776 678899999999999999    9999999999999 59999999999999999999999999999 6


Q ss_pred             CCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccc
Q 042906          316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  361 (415)
Q Consensus       316 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~  361 (415)
                      |.+   ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.
T Consensus       243 g~~---~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~  284 (285)
T 1wdy_A          243 HIE---INDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             SCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             CCC---ccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence            776   899999999999999999999999999986 999998873

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-45  Score=316.06  Aligned_cols=266  Identities=22%  Similarity=0.259  Sum_probs=245.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHH
Q 042906          121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVM  200 (415)
Q Consensus       121 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~  200 (415)
                      +|.|||+.|+..|+.+++++|++.|+++....+..|.||||+|+..|+.+++++|++.+.+....  +..|.||||.|+.
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   81 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHH
Confidence            47899999999999999999999999887666888999999999999999999999988765543  3688999999999


Q ss_pred             cCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhcc---------CCCCCCHHHHHHHcCC
Q 042906          201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR---------DCNGETPLHLAAENGK  271 (415)
Q Consensus       201 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~---------~~~g~t~L~~A~~~~~  271 (415)
                      .|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|++.|.++....         +..|.||||+|+..++
T Consensus        82 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T 1wdy_A           82 AGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence            9999999999998866 78889999999999999999999999999998876321         6789999999999999


Q ss_pred             HHHHHHHHHh-CCCccccccCCCCcHHHHHHhcCC----HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHH
Q 042906          272 LKVLKLLINK-YPDAIEIRDNSDRSILHVAAKHGN----WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (415)
Q Consensus       272 ~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  346 (415)
                      .+++++|++. +.+ ++..+..|+||||+|+..++    .+++++|++.|++   ++.++..|+||||+|+..|+.++++
T Consensus       161 ~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~  236 (285)
T 1wdy_A          161 VEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQ  236 (285)
T ss_dssp             HHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            9999999998 777 69999999999999999999    9999999999988   8999999999999999999999999


Q ss_pred             HHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906          347 TLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSA  402 (415)
Q Consensus       347 ~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~  402 (415)
                      +|+++.|++++.+|..|  +||||+|++       .++.+++++|+++||++++.+
T Consensus       237 ~Ll~~~g~~~~~~~~~g--~t~l~~A~~-------~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          237 RLLEQEHIEINDTDSDG--KTALLLAVE-------LKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHSSSCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHhccCCCccccCCCC--CcHHHHHHH-------cCcHHHHHHHHHcCCCCCccc
Confidence            99996799999999999  999999999       578899999999999987653

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-44  Score=308.66  Aligned_cols=267  Identities=20%  Similarity=0.193  Sum_probs=186.6

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhccchHHH--HHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCc
Q 042906           31 SPGGNTVLHMAVRFRNQQVIREILRQQNFIAL--RLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPL  108 (415)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  108 (415)
                      ...|.|+||+|+..|+.+.+..++..++....  ......++..+..|+||||+|+..|+.+++++|++.|++++     
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-----   86 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-----   86 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-----
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----
Confidence            35799999999999998877777665321000  00012356788889999999999999999999999988776     


Q ss_pred             chhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCC
Q 042906          109 PVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRL  188 (415)
Q Consensus       109 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  188 (415)
                              .+|..|.||||+|+..|+.+++++|++.|+++.                                       
T Consensus        87 --------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---------------------------------------  119 (285)
T 3d9h_A           87 --------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN---------------------------------------  119 (285)
T ss_dssp             --------EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS---------------------------------------
T ss_pred             --------CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC---------------------------------------
Confidence                    568889999999999999999999998886543                                       


Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE  268 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  268 (415)
                                                     ..+..|.||||+|+..++.+++++|++.++++.  .+..|.||||+|+.
T Consensus       120 -------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~  166 (285)
T 3d9h_A          120 -------------------------------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAAR  166 (285)
T ss_dssp             -------------------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHH
T ss_pred             -------------------------------CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH
Confidence                                           123346677777777777777777777777665  34458888888888


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906          269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (415)
Q Consensus       269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  348 (415)
                      .|+.+++++|++.+++ ++.++..|.||||+|+..++.+++++|++.|++   ++ .+..|+||||+|+..++.+++++|
T Consensus       167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~-~~~~g~t~L~~A~~~~~~~~v~~L  241 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGAD---VN-QGKGQDSPLHAVVRTASEELACLL  241 (285)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC---TT-CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC---CC-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence            8888888888888888 588888899999999999999999999988877   56 378888999999999999999999


Q ss_pred             hhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHh
Q 042906          349 SRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTA-YAKRA  399 (415)
Q Consensus       349 l~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~-Ga~~~  399 (415)
                      +++ |++++.+|.+|  +|||++|++.         .+++++|+++ ||+..
T Consensus       242 l~~-gad~~~~d~~g--~t~l~~A~~~---------~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          242 MDF-GADTQAKNAEG--KRPVELVPPE---------SPLAQLFLEREGASLP  281 (285)
T ss_dssp             HHT-TCCTTCCCTTS--CCGGGGSCTT---------SHHHHHHHHHC-----
T ss_pred             HHC-CCCCCCcCCCC--CCHHHHhcCc---------cHHHHHHHHhhccCCC
Confidence            986 89999999999  9999999862         3588899988 88754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.3e-45  Score=322.28  Aligned_cols=312  Identities=20%  Similarity=0.267  Sum_probs=221.5

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      .++|+.|+..|+.+.++.++++...+..    -.+++.-+...|+++++++++..              ..+..|.||||
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~--------------~~~~~g~t~L~   99 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYPN----PQGYGNGNDFLGDFNHTNLQIPT--------------EPEPESPIKLH   99 (373)
T ss_dssp             --------------------------------------------------------------------------CCCHHH
T ss_pred             ccccccccCCccccchhhhhhhhccccC----ccccCCCCCcccccccccccccc--------------CCCCCCccHHH
Confidence            4678888888999999988887765542    23456777888888888887665              34677999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhccc-CCCChHHHHHHHcCCHHHHHHHH--------hCCCCCcccc
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRD-IEGNTPLHNAVTNQHKRVIRILV--------EKDSVPSSYI  152 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll--------~~~~~~~~~~  152 (415)
                      +|+..+. +++++|+..  +++             ..| ..|.||||+|+..|+.+++++|+        +.|+++. ..
T Consensus       100 ~Aa~~~~-~~~~~L~~~--~~n-------------~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~  162 (373)
T 2fo1_E          100 TEAAGSY-AITEPITRE--SVN-------------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AM  162 (373)
T ss_dssp             HHHHSSS-CCCSCCSTT--TTT-------------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CC
T ss_pred             HHhcCCc-hHHHHhccc--ccc-------------ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CC
Confidence            9998554 777777542  222             445 68999999999999988777776        7888776 67


Q ss_pred             cccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcCh--hhhcccccCCCCHHH
Q 042906          153 NKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNK--ELIDRLDWHQRNPLH  230 (415)
Q Consensus       153 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~t~l~  230 (415)
                      +..|.||||+|+..|+.+++++|++.+.+....  +..|.||||+|+..|+.+++++|++.+.  ..++..+..|.||||
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~  240 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  240 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc--CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence            889999999999999999999999988766543  3688899999999999999999998873  457888999999999


Q ss_pred             HHHhcC---CHHHHHHHHHhchhhhh-------ccCCCCCCHHHHHHHcCCHHHHHHHHHhC-CCccccccCCCCcHHHH
Q 042906          231 YAAASG---NVKMAQRLLEESKQLAY-------KRDCNGETPLHLAAENGKLKVLKLLINKY-PDAIEIRDNSDRSILHV  299 (415)
Q Consensus       231 ~a~~~~---~~~~~~~Ll~~~~~~~~-------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~l~~  299 (415)
                      +|+..+   +.+++++|++.|++++.       ..+..|.||||+|+..|+.+++++|++++ ++ ++.+|..|+||||+
T Consensus       241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~  319 (373)
T 2fo1_E          241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIML  319 (373)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHH
T ss_pred             HHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHH
Confidence            999998   89999999999988763       25678999999999999999999999997 55 79999999999999


Q ss_pred             HHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906          300 AAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (415)
Q Consensus       300 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~  355 (415)
                      |+..|+.+++++|+++|++   ++.+|..|+|||++|+..|+.+++++|+++ |++
T Consensus       320 A~~~g~~~iv~~Ll~~gad---~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~  371 (373)
T 2fo1_E          320 AAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNIVDIFDRC-RPE  371 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred             HHHcCCHHHHHHHHHcCCC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence            9999999999999999988   899999999999999999999999999986 665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.1e-43  Score=301.86  Aligned_cols=256  Identities=18%  Similarity=0.210  Sum_probs=191.2

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhc-----------cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhh
Q 042906            2 DQELLEVLRNGDENKIKQLALRQ-----------NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLR   70 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~-----------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~   70 (415)
                      ++.||.|+..|+.+.+..++..+           ..++..+..|+||||+|+..|+.+++++|++.         +.+++
T Consensus        16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~---------g~~~~   86 (285)
T 3d9h_A           16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ---------GWAVN   86 (285)
T ss_dssp             --------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT---------TCCSC
T ss_pred             HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC---------CCCCC
Confidence            46799999999998888876653           33567788999999999999999999999998         56788


Q ss_pred             cCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc
Q 042906           71 QKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS  150 (415)
Q Consensus        71 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  150 (415)
                      .+|..|+||||+|+..|+.+++++|+++|++++             .+|..|.||||+|+..++.+++++|++.|+++..
T Consensus        87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (285)
T 3d9h_A           87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-------------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP  153 (285)
T ss_dssp             EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-------------CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC
Confidence            899999999999999999999999999999877             5688999999999999999999999998875431


Q ss_pred             cccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHH
Q 042906          151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH  230 (415)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  230 (415)
                        +                                                                     ..|.||||
T Consensus       154 --~---------------------------------------------------------------------~~g~t~L~  162 (285)
T 3d9h_A          154 --E---------------------------------------------------------------------SDLASPIH  162 (285)
T ss_dssp             --S---------------------------------------------------------------------CTTSCHHH
T ss_pred             --C---------------------------------------------------------------------CCCCCHHH
Confidence              0                                                                     12456777


Q ss_pred             HHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHH
Q 042906          231 YAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVS  310 (415)
Q Consensus       231 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  310 (415)
                      +|+..|+.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|++.|++. + .+..|.||||+|+..++.++++
T Consensus       163 ~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          163 EAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHH
Confidence            7777777777777777777766 56778888888888888888888888888873 5 3778888888888888888888


Q ss_pred             HHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccc
Q 042906          311 FILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA  358 (415)
Q Consensus       311 ~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~  358 (415)
                      +|+++|++   ++.+|..|+|||++|+  ++.+++++|+++.|+++..
T Consensus       240 ~Ll~~gad---~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          240 LLMDFGAD---TQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             HHHHTTCC---TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             HHHHCCCC---CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence            88888877   8888888888888888  4568888888876777654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2e-44  Score=320.19  Aligned_cols=312  Identities=19%  Similarity=0.192  Sum_probs=224.5

Q ss_pred             CCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhh
Q 042906           35 NTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL  114 (415)
Q Consensus        35 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  114 (415)
                      ..+|+.|+..|+.+.++.+++.+..         +.    ...+++.-+...|+.+++++++...               
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~g~~~~~~~~~~~~---------------   89 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSL---------YP----NPQGYGNGNDFLGDFNHTNLQIPTE---------------   89 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCCccccchhhhhhhhcc---------cc----CccccCCCCCccccccccccccccC---------------
Confidence            4567777788998888888886321         11    2235566788889999999887653               


Q ss_pred             hhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHh--------hhCCCCccCC
Q 042906          115 FRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFII--------DKSPESLNTT  186 (415)
Q Consensus       115 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll--------~~~~~~~~~~  186 (415)
                         .+..|.||||+|+..+. +++++|+..  ++....+..|.||||+|+..|+.+++++|+        +.+.+...  
T Consensus        90 ---~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~--  161 (373)
T 2fo1_E           90 ---PEPESPIKLHTEAAGSY-AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA--  161 (373)
T ss_dssp             -------CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC--
T ss_pred             ---CCCCCccHHHHHhcCCc-hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcC--
Confidence               46789999999999654 788888653  333233378999999999999999988887        45555433  


Q ss_pred             CCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhc---hhhhhccCCCCCCHH
Q 042906          187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES---KQLAYKRDCNGETPL  263 (415)
Q Consensus       187 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~g~t~L  263 (415)
                      .+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++++   .+++ ..+..|.|||
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L  239 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTAL  239 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCCHH
Confidence            347899999999999999999999999876 7888999999999999999999999999988   4555 5789999999


Q ss_pred             HHHHHcC---CHHHHHHHHHhCCCcccc--------ccCCCCcHHHHHHhcCCHHHHHHHhhCC-CcccccccCCCCCCc
Q 042906          264 HLAAENG---KLKVLKLLINKYPDAIEI--------RDNSDRSILHVAAKHGNWNIVSFILKSP-EMENLINLVDRNGNT  331 (415)
Q Consensus       264 ~~A~~~~---~~~~v~~Ll~~~~~~~~~--------~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~g~t  331 (415)
                      |+|+..+   +.+++++|+++|++. +.        .+..|.||||+|+..|+.+++++|++.+ .+   ++.+|..|+|
T Consensus       240 ~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~n~~d~~g~T  315 (373)
T 2fo1_E          240 MIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKT  315 (373)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCC
T ss_pred             HHHHHhCCcchHHHHHHHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC---ccCcCCCCCC
Confidence            9999998   899999999999884 54        6778999999999999999999999886 55   8999999999


Q ss_pred             HHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042906          332 PLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR  398 (415)
Q Consensus       332 ~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~  398 (415)
                      |||+|+..|+.+++++|+++ |++++.+|..|  +|||++|++       .++.+++++|+++|++.
T Consensus       316 pL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g--~t~l~~A~~-------~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          316 PIMLAAQEGRIEVVMYLIQQ-GASVEAVDATD--HTARQLAQA-------NNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSS--CCHHHHHHH-------TTCHHHHHHHHTTC---
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCccCCCCCC--CCHHHHHHH-------cCCHHHHHHHHhcCccc
Confidence            99999999999999999986 99999999999  999999999       58899999999999874

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-43  Score=315.26  Aligned_cols=290  Identities=17%  Similarity=0.137  Sum_probs=235.1

Q ss_pred             hHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCC
Q 042906           66 YSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD  145 (415)
Q Consensus        66 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  145 (415)
                      +...+..|..|.||||+|+..|+.++|++|+++|++++             .+|..|.||||+|+..|+.+++++|++.|
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   76 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-------------IQNRFGCTALHLACKFGCVDTAKYLASVG   76 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHHCCHHHHHHHHHHC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-------------ccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            45566778889999999999999999999999999876             57889999999999999999999999999


Q ss_pred             CCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCC
Q 042906          146 SVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQ  225 (415)
Q Consensus       146 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  225 (415)
                      ++..   ...|.||||+|+..++.+++++|++.+...        +..+-.........       .......+..+..|
T Consensus        77 ~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g  138 (364)
T 3ljn_A           77 EVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKER--------GQMPESLLNECDER-------EVNEIGSHVKHCKG  138 (364)
T ss_dssp             CCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHH--------TCCHHHHHTCCCCC-------CEEEETTEEEEESC
T ss_pred             CCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhcccc--------CCCHHHHHhhcchH-------hhhhhccccCCCCC
Confidence            8543   457889999999999999999999762110        00000000000000       00011244477889


Q ss_pred             CCHHHHHHhcC--CHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc----cccccCCCCcHHHH
Q 042906          226 RNPLHYAAASG--NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA----IEIRDNSDRSILHV  299 (415)
Q Consensus       226 ~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~  299 (415)
                      .||||+|+..|  +.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++++.    ++..+..|+||||+
T Consensus       139 ~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~  217 (364)
T 3ljn_A          139 QTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW  217 (364)
T ss_dssp             CCHHHHHHHSCGGGHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred             CCHHHHHHHcCCchHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence            99999999999  9999999999999988 68899999999999999999999999999873    48899999999999


Q ss_pred             HHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccc------------cccccccch
Q 042906          300 AAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA------------KNRSARNNI  367 (415)
Q Consensus       300 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~------------~d~~g~~~t  367 (415)
                      |+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++ |++++.            .+..|  +|
T Consensus       218 A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~--~~  291 (364)
T 3ljn_A          218 AILINWEDVAMRFVEMGID---VNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVV--WL  291 (364)
T ss_dssp             HHTTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCC--CC
T ss_pred             HHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccc--cc
Confidence            9999999999999999988   899999999999999999999999999987 777655            56667  99


Q ss_pred             hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 042906          368 ALEIAEITRADGKEIQKHLTLKALKTAYAKRAL  400 (415)
Q Consensus       368 ~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~  400 (415)
                      |++.|+.       .+..+.+..|+..|++...
T Consensus       292 ~l~~aa~-------~~~~~~v~~ll~~~~~~~~  317 (364)
T 3ljn_A          292 DFVPAAA-------DPSKQEVLQLLQEKLDEVV  317 (364)
T ss_dssp             TTSCSSC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhh-------ccCHHHHHHHHHHHHHHHh
Confidence            9999998       4656666677777777433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.7e-42  Score=297.11  Aligned_cols=265  Identities=20%  Similarity=0.218  Sum_probs=188.0

Q ss_pred             cccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCC
Q 042906           27 FSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAG  106 (415)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  106 (415)
                      ++..|..|+||||+|+..|+.+++++|++.++.      ...++.++..|+||||+|+..|+.+++++|+++|++++   
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---   72 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---   72 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC------cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---
Confidence            467888999999999999999999999997432      12378899999999999999999999999999999877   


Q ss_pred             CcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCC
Q 042906          107 PLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT  186 (415)
Q Consensus       107 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  186 (415)
                                .++..|.||||+|+..++.+++++|++.++........   +.                +...       
T Consensus        73 ----------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~----------------~~~~-------  116 (282)
T 1oy3_D           73 ----------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD---TY----------------LTQS-------  116 (282)
T ss_dssp             ----------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred             ----------CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH---HH----------------hhcc-------
Confidence                      56889999999999999999999999998764311000   00                0000       


Q ss_pred             CCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC-HHHHHHHHHhchhhhhccCCCCCCHHHH
Q 042906          187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN-VKMAQRLLEESKQLAYKRDCNGETPLHL  265 (415)
Q Consensus       187 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  265 (415)
                                                     .......+.++++.+...+. ......+...+.+++ ..+..|.||||+
T Consensus       117 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~t~L~~  164 (282)
T 1oy3_D          117 -------------------------------QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHV  164 (282)
T ss_dssp             ----------------------------------------------------------CCCGGGGTT-CCCTTSCCHHHH
T ss_pred             -------------------------------cccCcchhcchhhhccccccchhhhhhhhhhhhcCC-CcCCCCcCHHHH
Confidence                                           00000112233333333222 222333334444554 578889999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHH
Q 042906          266 AAENGKLKVLKLLINKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDV  344 (415)
Q Consensus       266 A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  344 (415)
                      |+..|+.+++++|+++|++ ++..+. .|+||||+|+..++.+++++|+++|++   ++.+|..|+||||+|+..|+.++
T Consensus       165 A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          165 AVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCcHH
Confidence            9999999999999999988 477775 499999999999999999999999887   89999999999999999999999


Q ss_pred             HHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          345 VFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       345 ~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      +++|+++ |++++.+|.+|  +|||++|...
T Consensus       241 v~~Ll~~-ga~~~~~~~~g--~tpl~~a~~~  268 (282)
T 1oy3_D          241 ARLLRAH-GAPEPEDGGDK--LSPCSSSGSD  268 (282)
T ss_dssp             HHHHHHT-TCCCCCCC---------------
T ss_pred             HHHHHHc-CCCcCcCCCcc--cccccccCCc
Confidence            9999986 99999999999  9999999885

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.8e-43  Score=314.11  Aligned_cols=290  Identities=17%  Similarity=0.152  Sum_probs=233.3

Q ss_pred             cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhcccccc
Q 042906           25 NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQ  104 (415)
Q Consensus        25 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  104 (415)
                      .+.+..|..|.||||+|+..|+.+++++|++.         +++++..|..|.||||+|+..|+.+++++|+++|++++ 
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~---------g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-   80 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIET---------GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS-   80 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHHHT---------TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC-
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc-
Confidence            34556778899999999999999999999998         56788899999999999999999999999999999654 


Q ss_pred             CCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhC----CCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCC
Q 042906          105 AGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK----DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP  180 (415)
Q Consensus       105 ~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  180 (415)
                                    +..|.||||+|+..|+.+++++|++.    +.++......           .....+        .
T Consensus        81 --------------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-----------~~~~~~--------~  127 (364)
T 3ljn_A           81 --------------LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNE-----------CDEREV--------N  127 (364)
T ss_dssp             --------------CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTC-----------CCCCCE--------E
T ss_pred             --------------ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhh-----------cchHhh--------h
Confidence                          34799999999999999999999998    5443210000           000000        0


Q ss_pred             CCccCCCCCcchhHHHHHHHcC--CHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchh-----hhh
Q 042906          181 ESLNTTRLPDELTLLHFVVMRQ--NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQ-----LAY  253 (415)
Q Consensus       181 ~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~  253 (415)
                      .......+..|.||||+|+..|  +.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++     ++ 
T Consensus       128 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-  205 (364)
T 3ljn_A          128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-  205 (364)
T ss_dssp             EETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-
T ss_pred             hhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-
Confidence            0001112356778888888888  88888888888755 788889999999999999999999999999988     66 


Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccc---------ccc
Q 042906          254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL---------INL  324 (415)
Q Consensus       254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~---------~~~  324 (415)
                      ..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++...         ...
T Consensus       206 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  284 (364)
T 3ljn_A          206 YANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL  284 (364)
T ss_dssp             CCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccc
Confidence            6788999999999999999999999999999 599999999999999999999999999999866211         122


Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccc
Q 042906          325 VDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  361 (415)
Q Consensus       325 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~  361 (415)
                      .+..++||++.|+..++.+.+..|+.. +++....+.
T Consensus       285 ~~~~~~~~l~~aa~~~~~~~v~~ll~~-~~~~~~~~~  320 (364)
T 3ljn_A          285 PDRVVWLDFVPAAADPSKQEVLQLLQE-KLDEVVRSL  320 (364)
T ss_dssp             GGGCCCCTTSCSSCCHHHHHHHHHHHH-HHHHHHTC-
T ss_pred             ccccccccchhhhhccCHHHHHHHHHH-HHHHHhhcc
Confidence            567889999999999988888888876 555544433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.7e-41  Score=290.82  Aligned_cols=232  Identities=17%  Similarity=0.194  Sum_probs=170.7

Q ss_pred             hhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCC
Q 042906           69 LRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP  148 (415)
Q Consensus        69 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  148 (415)
                      ++.+|..|+||||+|+..|+.+++++|+++|++...          ++.++..|.||||+|+..|+.+++++|++.|+++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   71 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY----------LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV   71 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG----------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc----------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456889999999999999999999999999987331          3367889999999999999999999999999987


Q ss_pred             cccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCH
Q 042906          149 SSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP  228 (415)
Q Consensus       149 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  228 (415)
                      . ..+..|.||||+|+..++.+++++|++.+.......                                      ..+.
T Consensus        72 ~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------------------------------~~~~  112 (282)
T 1oy3_D           72 L-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA--------------------------------------SDTY  112 (282)
T ss_dssp             S-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------
T ss_pred             C-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhh--------------------------------------HHHH
Confidence            6 667788888888888888888888876654321110                                      0000


Q ss_pred             HHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHH-HHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH
Q 042906          229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK-VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN  307 (415)
Q Consensus       229 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~-~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  307 (415)
                                      +.....   .....+.++++.++..+... ....+...+.+ ++..+..|.||||+|+..|+.+
T Consensus       113 ----------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A~~~g~~~  172 (282)
T 1oy3_D          113 ----------------LTQSQD---CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAE  172 (282)
T ss_dssp             --------------------------------------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ----------------hhcccc---cCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCcCHHHHHHHcCCHH
Confidence                            000111   12234556666666555433 33444444555 6889999999999999999999


Q ss_pred             HHHHHhhCCCcccccccCCC-CCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          308 IVSFILKSPEMENLINLVDR-NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       308 ~~~~Ll~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      ++++|+++|++   ++.++. .|+||||+|+..|+.+++++|+++ |++++.+|..|  +||||+|++.
T Consensus       173 ~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g--~tpL~~A~~~  235 (282)
T 1oy3_D          173 MVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGG--RTPLGSALLR  235 (282)
T ss_dssp             HHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHTS
T ss_pred             HHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCC--CCHHHHHHHc
Confidence            99999999988   888885 499999999999999999999986 99999999999  9999999974

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.9e-41  Score=283.18  Aligned_cols=230  Identities=24%  Similarity=0.339  Sum_probs=132.4

Q ss_pred             ccccCCCCCCCHHHHHHHhC-------------CHHHHHHHHhccchHHHHHHhHhh-hcCCCCCCChHHHHHHhCcHHH
Q 042906           26 IFSTSSPGGNTVLHMAVRFR-------------NQQVIREILRQQNFIALRLHYSLL-RQKNLMDETPLHIAARIGNRAI   91 (415)
Q Consensus        26 ~~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~   91 (415)
                      +++.+|.+|+||||+|+..|             +.+++++|++.+         ..+ +..|..|+||||+|+..|+.++
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g---------~~~~~~~d~~g~t~L~~A~~~g~~~~   72 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG---------ASLHNQTDRTGETALHLAARYSRSDA   72 (253)
T ss_dssp             -----------------------------------------------------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHcc---------CCcccccCCCCCcHHHHHHHcCCHHH
Confidence            57888999999999999987             677777777763         223 3346777777777777777777


Q ss_pred             HHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhH
Q 042906           92 VSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS  171 (415)
Q Consensus        92 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  171 (415)
                      +++|+++|++++             .++..|.||||+|+..++.+++++|++.++...                      
T Consensus        73 v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----------------------  117 (253)
T 1yyh_A           73 AKRLLEASADAN-------------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDL----------------------  117 (253)
T ss_dssp             HHHHHHTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCT----------------------
T ss_pred             HHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc----------------------
Confidence            777777777665             456677777777777777777777777665222                      


Q ss_pred             HHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhh
Q 042906          172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL  251 (415)
Q Consensus       172 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  251 (415)
                                                                     +..+..|.||||+|+..++.+++++|++.|+++
T Consensus       118 -----------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  150 (253)
T 1yyh_A          118 -----------------------------------------------DARMHDGTTPLILAARLAVEGMLEDLINSHADV  150 (253)
T ss_dssp             -----------------------------------------------TCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT
T ss_pred             -----------------------------------------------cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC
Confidence                                                           222334556666666666666666666666665


Q ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCc
Q 042906          252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNT  331 (415)
Q Consensus       252 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t  331 (415)
                      + ..+..|.||||+|+..++.+++++|+++|++ ++.++..|.||||+|+..++.+++++|+++|++   ++.+|..|+|
T Consensus       151 ~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t  225 (253)
T 1yyh_A          151 N-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRL  225 (253)
T ss_dssp             T-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCC
T ss_pred             C-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---ccccccCCCC
Confidence            5 4566677777777777777777777777766 466777777777777777777777777777666   6667777777


Q ss_pred             HHHHHHhcCChHHHHHHhhc
Q 042906          332 PLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       332 ~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      |+++|+..|+.+++++|...
T Consensus       226 pl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          226 PRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHHHHHTTCHHHHHHHHC-
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            77777777777777777654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2e-40  Score=276.58  Aligned_cols=120  Identities=23%  Similarity=0.351  Sum_probs=68.6

Q ss_pred             ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906          222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA  301 (415)
Q Consensus       222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~  301 (415)
                      +..|.||||+|+..++.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|++.+++ ++.+|..|.||||+|+
T Consensus       108 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~  185 (237)
T 3b7b_A          108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAA  185 (237)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence            3345555555555555555555555555554 3455555666666666666666666665555 3555555666666666


Q ss_pred             hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHH
Q 042906          302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (415)
Q Consensus       302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  346 (415)
                      ..++.+++++|+++|++   ++.+|..|+||||+|+..++...+.
T Consensus       186 ~~~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~~~~~~~~~~  227 (237)
T 3b7b_A          186 RENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQVWSAL  227 (237)
T ss_dssp             HTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred             HhCCHhHHHHHHHcCCC---CCccCCCCCCHHHHHHHHHHHHHHH
Confidence            66666666666655555   5555556666666666555554333

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.8e-41  Score=282.59  Aligned_cols=236  Identities=22%  Similarity=0.260  Sum_probs=182.4

Q ss_pred             ccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCC
Q 042906           28 STSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGP  107 (415)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  107 (415)
                      +.+|.+|.||||+|+..|+.+++++|++...     ..+..++..+..|.||||+|+..|+.+++++|+++|++++    
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----   73 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQ-----QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM----   73 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHH-----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHH-----hcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc----
Confidence            4567778888888888888888888887311     1256677777788888888888888888888888877665    


Q ss_pred             cchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCC
Q 042906          108 LPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTR  187 (415)
Q Consensus       108 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  187 (415)
                               ..+..|.||||+|+..++.+++++|++.++...                                      
T Consensus        74 ---------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--------------------------------------  106 (241)
T 1k1a_A           74 ---------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT--------------------------------------  106 (241)
T ss_dssp             ---------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTS--------------------------------------
T ss_pred             ---------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------------------------------------
Confidence                     456677888888888888888888877665210                                      


Q ss_pred             CCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH
Q 042906          188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA  267 (415)
Q Consensus       188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  267 (415)
                                                  ..++..+..|.||||+|+..++.+++++|++.|.+++......|.||||+|+
T Consensus       107 ----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A          107 ----------------------------LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             ----------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             ----------------------------ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence                                        0133445667888888888888889999998888877433377899999999


Q ss_pred             HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHH
Q 042906          268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT  347 (415)
Q Consensus       268 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  347 (415)
                      ..++.+++++|+++|++ ++.++..|.||||+|+..++.+++++|+++|++   ++.+|..|+|||++|+..|+.++++.
T Consensus       159 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~i~~~  234 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDILRG  234 (241)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence            99999999999999888 588899999999999999999999999999887   88889999999999999999999998


Q ss_pred             Hhhc
Q 042906          348 LSRH  351 (415)
Q Consensus       348 Ll~~  351 (415)
                      |++.
T Consensus       235 l~~~  238 (241)
T 1k1a_A          235 KATR  238 (241)
T ss_dssp             ----
T ss_pred             hccC
Confidence            8864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.6e-41  Score=280.79  Aligned_cols=218  Identities=25%  Similarity=0.259  Sum_probs=158.0

Q ss_pred             hhcccCCCChHHHHHHHcC-------------CHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCC
Q 042906          115 FRMRDIEGNTPLHNAVTNQ-------------HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE  181 (415)
Q Consensus       115 ~~~~~~~g~t~l~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  181 (415)
                      ++.+|..|.||||+|+..|             +.+++++|++.|+++....+..|.                        
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~------------------------   58 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE------------------------   58 (253)
T ss_dssp             -------------------------------------------------CCCTTSC------------------------
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCC------------------------
Confidence            4467889999999999987             566666666666555433444444                        


Q ss_pred             CccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCC
Q 042906          182 SLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGET  261 (415)
Q Consensus       182 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  261 (415)
                                 ||||+|+..|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|++.+.......+..|.|
T Consensus        59 -----------t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  126 (253)
T 1yyh_A           59 -----------TALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT  126 (253)
T ss_dssp             -----------CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCC
T ss_pred             -----------cHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCc
Confidence                       455555555555555555555433 66678889999999999999999999999998444468899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCC
Q 042906          262 PLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLH  341 (415)
Q Consensus       262 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~  341 (415)
                      |||+|+..++.+++++|++.|++ ++.++..|+||||+|+..++.+++++|+++|++   ++.+|..|+||||+|+..|+
T Consensus       127 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~~~  202 (253)
T 1yyh_A          127 PLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGS  202 (253)
T ss_dssp             HHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999 699999999999999999999999999999988   89999999999999999999


Q ss_pred             hHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          342 SDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       342 ~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      .+++++|+++ |++++.+|..|  +||+++|++.
T Consensus       203 ~~~v~~Ll~~-ga~~~~~d~~g--~tpl~~A~~~  233 (253)
T 1yyh_A          203 YETAKVLLDH-FANRDITDHMD--RLPRDIAQER  233 (253)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTC--CCHHHHHHHT
T ss_pred             HHHHHHHHHc-CCCccccccCC--CCHHHHHHHc
Confidence            9999999986 99999999999  9999999985

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.5e-40  Score=273.93  Aligned_cols=227  Identities=23%  Similarity=0.302  Sum_probs=183.5

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchh
Q 042906           32 PGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVL  111 (415)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  111 (415)
                      ..+.+|||.|++.|+.+.+++|++.        .+..++..+..|.||||+|+..|+.+++++|+++|++++        
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~--------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------   67 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILA--------DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--------   67 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHH--------CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--------
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHh--------chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC--------
Confidence            4577899999999999999998887        345577788888999999999999999999998888766        


Q ss_pred             hhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906          112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE  191 (415)
Q Consensus       112 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  191 (415)
                           .+|..|.||||+|+..++.+++++|++.|+++.                                          
T Consensus        68 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------------------------------------  100 (231)
T 3aji_A           68 -----DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN------------------------------------------  100 (231)
T ss_dssp             -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------------------------------------
T ss_pred             -----CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC------------------------------------------
Confidence                 457788888888888888888888888776432                                          


Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCC
Q 042906          192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK  271 (415)
Q Consensus       192 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  271 (415)
                                                  ..+..|.||||+|+..++.+++++|+++|.+++ ..+..|.||||+|+..++
T Consensus       101 ----------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~  151 (231)
T 3aji_A          101 ----------------------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGN  151 (231)
T ss_dssp             ----------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             ----------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCC
Confidence                                        123346677777777777777777777777766 567778888888888888


Q ss_pred             HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          272 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       272 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      .+++++|++++++ ++.++..|+||||+|+..++.+++++|+++|++   ++.+|..|+|||++|+..++.+++++|+++
T Consensus       152 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          152 LKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            8888888888888 588888888888888888888888888888877   788888888888888888888888888875


Q ss_pred             cCcC
Q 042906          352 KSVN  355 (415)
Q Consensus       352 ~g~~  355 (415)
                       |++
T Consensus       228 -~a~  230 (231)
T 3aji_A          228 -EAS  230 (231)
T ss_dssp             -HHC
T ss_pred             -ccc
Confidence             554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.4e-40  Score=272.78  Aligned_cols=227  Identities=22%  Similarity=0.276  Sum_probs=195.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHH
Q 042906          120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVV  199 (415)
Q Consensus       120 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~  199 (415)
                      ..+.+|||.|+..|+.+++++|++.++......+..|.||||+|+..++.+++++|+                       
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-----------------------   60 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-----------------------   60 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-----------------------
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHH-----------------------
Confidence            356788888888888888888887776544445555555555555555555555554                       


Q ss_pred             HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHH
Q 042906          200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI  279 (415)
Q Consensus       200 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  279 (415)
                                  +.+.. ++..+..|.||||+|+..++.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|+
T Consensus        61 ------------~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll  126 (231)
T 3aji_A           61 ------------QLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLL  126 (231)
T ss_dssp             ------------HTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ------------HhCCC-CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                        44332 55667789999999999999999999999999887 67889999999999999999999999


Q ss_pred             HhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccc
Q 042906          280 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK  359 (415)
Q Consensus       280 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~  359 (415)
                      +++++ ++.++..|.||||+|+..++.+++++|+++|++   ++.+|..|+||||+|+..++.+++++|+++ |++++.+
T Consensus       127 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~  201 (231)
T 3aji_A          127 EGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIE  201 (231)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCC
T ss_pred             HcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCC
Confidence            99999 599999999999999999999999999999988   899999999999999999999999999986 9999999


Q ss_pred             ccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          360 NRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       360 d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      |..|  +|||++|.+       .+..+++++|+++||+
T Consensus       202 ~~~g--~t~l~~A~~-------~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          202 NKEE--KTPLQVAKG-------GLGLILKRLAEGEEAS  230 (231)
T ss_dssp             CTTS--CCHHHHSCH-------HHHHHHHHHHHHHHHC
T ss_pred             CCCC--CCHHHHHHh-------hHHHHHHHHHcccccc
Confidence            9999  999999998       6889999999999985

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.7e-40  Score=276.55  Aligned_cols=229  Identities=26%  Similarity=0.299  Sum_probs=189.2

Q ss_pred             hcccCCCChHHHHHHHcCCHHHHHHHHh----CCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906          116 RMRDIEGNTPLHNAVTNQHKRVIRILVE----KDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE  191 (415)
Q Consensus       116 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  191 (415)
                      +.+|..|.||||+|+..|+.+++++|++    .+.++. ..+..|.||||+|+..++.+++++|++              
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------   67 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVT--------------   67 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH--------------
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHH--------------
Confidence            4578899999999999999999999987    455443 455556666666665555555555554              


Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhch----hhhhccCCCCCCHHHHHH
Q 042906          192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK----QLAYKRDCNGETPLHLAA  267 (415)
Q Consensus       192 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~A~  267 (415)
                                           .+.. ++..+..|.||||+|+..++.+++++|++.+.    +.. ..+..|.||||+|+
T Consensus        68 ---------------------~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~  124 (241)
T 1k1a_A           68 ---------------------AGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAV  124 (241)
T ss_dssp             ---------------------TTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHH
T ss_pred             ---------------------cCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHH
Confidence                                 3332 55567788999999999999999999999987    444 57889999999999


Q ss_pred             HcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHH
Q 042906          268 ENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (415)
Q Consensus       268 ~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  346 (415)
                      ..++.+++++|++.+++ ++..+ ..|.||||+|+..++.+++++|+++|++   ++.+|..|+||||+|+..|+.++++
T Consensus       125 ~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          125 NTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999 47777 8899999999999999999999999988   8999999999999999999999999


Q ss_pred             HHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 042906          347 TLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYA  396 (415)
Q Consensus       347 ~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga  396 (415)
                      +|+++ |++++.+|..|  +|||++|++       .+..++++.|.+.+|
T Consensus       201 ~Ll~~-ga~~~~~~~~g--~tpl~~A~~-------~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          201 TLVRS-GADSSLKNCHN--DTPLMVARS-------RRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHT-TCCTTCCCTTS--CCTTTTCSS-------HHHHHHHTC------
T ss_pred             HHHhc-CCCCCCcCCCC--CCHHHHHHh-------cCcHHHHhhhccCCC
Confidence            99986 99999999999  999999999       689999999999886

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1e-39  Score=272.24  Aligned_cols=217  Identities=28%  Similarity=0.392  Sum_probs=179.3

Q ss_pred             hhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCC
Q 042906           69 LRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP  148 (415)
Q Consensus        69 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  148 (415)
                      ++.++..|.||||+|+..|+.+++++|+++|++++             ..+..|.||||+|+..|+.+++++|++.|+++
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   70 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-------------TCSEDQRTPLMEAAENNHLEAVKYLIKAGALV   70 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-------------ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            44566667777777777777777777777766655             34556777777777777777777776665533


Q ss_pred             cccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCH
Q 042906          149 SSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP  228 (415)
Q Consensus       149 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  228 (415)
                      .                                                                      ..+..|.||
T Consensus        71 ~----------------------------------------------------------------------~~~~~g~t~   80 (237)
T 3b7b_A           71 D----------------------------------------------------------------------PKDAEGSTC   80 (237)
T ss_dssp             C----------------------------------------------------------------------CCCTTSCCH
T ss_pred             C----------------------------------------------------------------------CCCCCCCcH
Confidence            2                                                                      224456788


Q ss_pred             HHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHH
Q 042906          229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI  308 (415)
Q Consensus       229 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  308 (415)
                      ||+|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|+++|++ ++.++..|.||||+|+..++.++
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHH
Confidence            88888888888888888887433336788999999999999999999999999999 59999999999999999999999


Q ss_pred             HHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          309 VSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       309 ~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      +++|++.|++   ++.+|..|.||||+|+..++.+++++|+++ |++++.+|.+|  +|||++|+++
T Consensus       160 ~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g--~t~l~~A~~~  220 (237)
T 3b7b_A          160 AEILLAAKCD---LHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEG--ETPLQCASLN  220 (237)
T ss_dssp             HHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTS--CCHHHHSCTT
T ss_pred             HHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCC--CCHHHHHHHH
Confidence            9999999988   899999999999999999999999999986 99999999999  9999999984

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.4e-39  Score=269.82  Aligned_cols=213  Identities=25%  Similarity=0.315  Sum_probs=172.5

Q ss_pred             CCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCccccccc
Q 042906           76 DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA  155 (415)
Q Consensus        76 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  155 (415)
                      |+||||+|+..|+.+++++|++.+++...            ..+..|.||||+|+..|+.+++++|++.|++...     
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----   64 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLL------------QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL-----   64 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG-----
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccc------------cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc-----
Confidence            67888888888888888888887765432            3567788888888888888888888877743220     


Q ss_pred             CCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhc
Q 042906          156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (415)
Q Consensus       156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  235 (415)
                                                                                    ....+..|.||||+|+..
T Consensus        65 --------------------------------------------------------------~~~~~~~g~t~L~~A~~~   82 (228)
T 2dzn_A           65 --------------------------------------------------------------DDYPDDSGWTPFHIACSV   82 (228)
T ss_dssp             --------------------------------------------------------------GGCCCTTSCCHHHHHHHH
T ss_pred             --------------------------------------------------------------cccCCCCCCCHHHHHHHc
Confidence                                                                          001344567788888888


Q ss_pred             CCHHHHHHHHHhc--hhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHh
Q 042906          236 GNVKMAQRLLEES--KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL  313 (415)
Q Consensus       236 ~~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  313 (415)
                      |+.+++++|+++|  .+.+ ..+..|.||||+|+..++.+++++|+++|++ ++.++..|.||||+|+..++.+++++|+
T Consensus        83 ~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             CCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            8888888888877  5555 5677889999999999999999999999888 5889999999999999999999999999


Q ss_pred             hCC-CcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          314 KSP-EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       314 ~~~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      +.| .+   ++.+|..|+||||+|+..|+.+++++|++..|++++.+|.+|  +||+++|.+
T Consensus       161 ~~g~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g--~t~l~~A~~  217 (228)
T 2dzn_A          161 GLGKSA---VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG--AKAEDVALN  217 (228)
T ss_dssp             TTTCCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS--CBGGGGCSS
T ss_pred             hcCccc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC--CcHHHHHHH
Confidence            998 55   888999999999999999999999999944599999999999  999999977

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.1e-39  Score=266.39  Aligned_cols=224  Identities=25%  Similarity=0.297  Sum_probs=180.8

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhh
Q 042906           34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLES  113 (415)
Q Consensus        34 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  113 (415)
                      |+||||+|+..|+.+++++|++.+        ....+..+..|.||||+|+..|+.+++++|+++|++++          
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----------   63 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSK--------PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN----------   63 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHC--------GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC----------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcC--------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc----------
Confidence            789999999999999999999984        34455689999999999999999999999999995544          


Q ss_pred             hhhc-ccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcch
Q 042906          114 LFRM-RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL  192 (415)
Q Consensus       114 ~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  192 (415)
                       +.. .+..|.||||+|+..|+.+++++|++.|....                                           
T Consensus        64 -~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-------------------------------------------   99 (228)
T 2dzn_A           64 -LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-------------------------------------------   99 (228)
T ss_dssp             -GGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC-------------------------------------------
T ss_pred             -ccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-------------------------------------------
Confidence             223 67899999999999999999999998873211                                           


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH
Q 042906          193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL  272 (415)
Q Consensus       193 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  272 (415)
                                               ++..+..|.||||.|+..++.+++++|+++|.+++ ..+..|.||||+|+..++.
T Consensus       100 -------------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~  153 (228)
T 2dzn_A          100 -------------------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSL  153 (228)
T ss_dssp             -------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCH
T ss_pred             -------------------------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCH
Confidence                                     22234456777888888888888888888877776 5677888888888888888


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHh-hCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL-KSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       273 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      +++++|++.+...++.+|..|+||||+|+..++.+++++|+ +.|++   ++.+|..|+||+++|+..   +++++|+++
T Consensus       154 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~---~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC---SCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC---CCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            88888888883336888888888888888888888888888 77877   788888888888888643   666777653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.9e-39  Score=268.84  Aligned_cols=235  Identities=23%  Similarity=0.270  Sum_probs=170.8

Q ss_pred             hcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCc
Q 042906           70 RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS  149 (415)
Q Consensus        70 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  149 (415)
                      +..|..|.|||+.|+..|+.+++++|++.|++++             ..+..|.||||+|+..|+.+++++|++.|++..
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~   69 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-------------QPDKENVTLLHWAAINNRIDLVKYYISKGAIVD   69 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcC-------------CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch
Confidence            3456667777777777777777777777776655             346677777777777777777777777765443


Q ss_pred             ccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHH
Q 042906          150 SYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPL  229 (415)
Q Consensus       150 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  229 (415)
                      ..                                                                     .+..|.|||
T Consensus        70 ~~---------------------------------------------------------------------~~~~~~t~L   80 (240)
T 3eu9_A           70 QL---------------------------------------------------------------------GGDLNSTPL   80 (240)
T ss_dssp             CC---------------------------------------------------------------------BTTTTBCHH
T ss_pred             hh---------------------------------------------------------------------cCCcCCChh
Confidence            21                                                                     122355677


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC-HHH
Q 042906          230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-WNI  308 (415)
Q Consensus       230 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-~~~  308 (415)
                      |.|+..++.+++++|++.|.++. ..+..|.||||+|+..++.+++++|++++++ ++.++..|.||||+|+..++ .++
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~  158 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDP  158 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHH
Confidence            77777777777777777777666 4667778888888888888888888888877 47778888888888886555 778


Q ss_pred             HHHHhhCCCcccccccCCC-CCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHH
Q 042906          309 VSFILKSPEMENLINLVDR-NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLT  387 (415)
Q Consensus       309 ~~~Ll~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~  387 (415)
                      +++|++.|.+   ++..+. .|.||||+|+..|+.+++++|+++ |++++.+|..|  .|||++|++       .++.++
T Consensus       159 ~~~L~~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g--~t~l~~A~~-------~~~~~~  225 (240)
T 3eu9_A          159 TRLLLTFNVS---VNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKG--ESALDLAKQ-------RKNVWM  225 (240)
T ss_dssp             HHHHHHTTCC---TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTS--CBHHHHHHH-------TTCHHH
T ss_pred             HHHHHhcCCC---cchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCC--CCHHHHHHH-------cCcHHH
Confidence            8888888776   777776 788888888888888888888875 78888888888  888888888       477788


Q ss_pred             HHHHHHHHHHHhhc
Q 042906          388 LKALKTAYAKRALS  401 (415)
Q Consensus       388 ~~~L~~~Ga~~~~~  401 (415)
                      +++|+++|++....
T Consensus       226 v~~L~~~~~~~~~~  239 (240)
T 3eu9_A          226 INHLQEARQAKGYD  239 (240)
T ss_dssp             HHHHHHHC------
T ss_pred             HHHHHHhhhccCcC
Confidence            88888888876543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-40  Score=279.04  Aligned_cols=240  Identities=23%  Similarity=0.273  Sum_probs=177.1

Q ss_pred             cccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHH
Q 042906          117 MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH  196 (415)
Q Consensus       117 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~  196 (415)
                      .+|..+.+||+.|+..|+.++|++|++.++........                            .....+..+.+||+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~----------------------------~~~~~~~~~~t~L~   57 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAED----------------------------TVSAADPEFCHPLC   57 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccc----------------------------cccccCccCCCHHH
Confidence            45777889999999999999999999988754311000                            01112245668888


Q ss_pred             HHHHcCCHH-HHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHH
Q 042906          197 FVVMRQNYD-IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVL  275 (415)
Q Consensus       197 ~a~~~~~~~-~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  275 (415)
                      .|+..+..+ ++..|+..+.+ ++..+..|.||||+|+..|+.+++++|++.++++. ..+..|.||++.|+..++.+++
T Consensus        58 ~a~~~~~~~~~v~~Ll~~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~  135 (269)
T 4b93_B           58 QCPKCAPAQKRLAKVPASGLG-VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVV  135 (269)
T ss_dssp             -----------------CCCC-TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHH
Confidence            888776654 56777777655 88899999999999999999999999999999987 6888999999999999999999


Q ss_pred             HHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906          276 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (415)
Q Consensus       276 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~  355 (415)
                      ++|++.|++ ++.+|..|+||||+|+..|+.+++++|++.|++   +|.++..|+||||+|+..|+.+++++|+++ |+|
T Consensus       136 ~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad---vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad  210 (269)
T 4b93_B          136 KCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFVVELLLLH-GAS  210 (269)
T ss_dssp             HHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             HHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            999999999 599999999999999999999999999999988   999999999999999999999999999986 999


Q ss_pred             ccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 042906          356 IRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRA  399 (415)
Q Consensus       356 ~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~  399 (415)
                      ++.+|.+|  +||||+|+++      ..-.+++++|...|+..+
T Consensus       211 ~~~~d~~G--~TpL~~A~~~------~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          211 VQVLNKRQ--RTAVDCAEQN------SKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             SCCCCTTS--CCSGGGSCTT------CHHHHHTTC---------
T ss_pred             CCCcCCCC--CCHHHHHHhC------CcHHHHHHHHHHhchhhh
Confidence            99999999  9999999874      122456777777777643

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.5e-39  Score=276.46  Aligned_cols=238  Identities=18%  Similarity=0.161  Sum_probs=146.3

Q ss_pred             HHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhC
Q 042906            8 VLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIG   87 (415)
Q Consensus         8 A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g   87 (415)
                      +++..+.+.+..++..+ +++..|..|.||||+|+..|+.+++++|++.         +++++..  +|+||||+|+..|
T Consensus         6 ~i~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~--~g~t~L~~A~~~g   73 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNA---------GALKNLL--ENEFPLHQAATLE   73 (285)
T ss_dssp             TGGGCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------TGGGSCC--TTCCHHHHHTTSS
T ss_pred             HHHhcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC---------CCCCCCC--CCCCHHHHHHHcC
Confidence            45667777777777766 5788888889999999999999999999887         4445555  3888999999888


Q ss_pred             cHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccC-CcHHHHHHHc
Q 042906           88 NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY-QTPLSIAIDA  166 (415)
Q Consensus        88 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~l~~a~~~  166 (415)
                      +.+++++|+++|++++             .+|..|.||||+|+..|+.+++++|++.|+++. ..+..| .||||+|+..
T Consensus        74 ~~~~v~~Ll~~ga~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A           74 DTKIVKILLFSGLDDS-------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVML  139 (285)
T ss_dssp             SCHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCCC-------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHc
Confidence            8899999998888776             467788888888888888888888888877554 233333 3444444444


Q ss_pred             CChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHH
Q 042906          167 RLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE  246 (415)
Q Consensus       167 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  246 (415)
                      ++.+++++|++.+                                   ....+  ...|.||||+|+..|+.+++++|++
T Consensus       140 ~~~~~v~~Ll~~g-----------------------------------~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~  182 (285)
T 3kea_A          140 NDVSIVSYFLSEI-----------------------------------PSTFD--LAILLSCIHITIKNGHVDMMILLLD  182 (285)
T ss_dssp             TCHHHHHHHHTTS-----------------------------------CTTCC--CSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHhCC-----------------------------------Ccccc--ccCCccHHHHHHHcChHHHHHHHHH
Confidence            4443333333322                                   11100  0134455555555555555555555


Q ss_pred             hchhhhhccCCCCCCH-HHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCC
Q 042906          247 ESKQLAYKRDCNGETP-LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE  317 (415)
Q Consensus       247 ~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  317 (415)
                      +|++++ ..+..|.|| ||+|+..++.+++++|+++|++ ++..+       +.|+..++.+++++|+++|.
T Consensus       183 ~gad~n-~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~  245 (285)
T 3kea_A          183 YMTSTN-TNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHV  245 (285)
T ss_dssp             HHHHTC-TTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHH
T ss_pred             cCCCCC-cccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCC
Confidence            555444 344444444 5555555555555555555544 23333       12334444444444444443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-39  Score=280.23  Aligned_cols=274  Identities=20%  Similarity=0.234  Sum_probs=217.3

Q ss_pred             HHHHcCChhHHHHHHhhccccccC---------CCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCC
Q 042906            7 EVLRNGDENKIKQLALRQNIFSTS---------SPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDE   77 (415)
Q Consensus         7 ~A~~~g~~~~v~~ll~~~~~~~~~---------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~   77 (415)
                      .+++.+..+.++.++.....+...         +..|.||||.||..|+.+++++|++.         +.+++..+..|.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~   74 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER---------GADINYANVDGL   74 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH---------CCCTTCBCTTCC
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc---------CCCCcccCCCCC
Confidence            578888999999999887544322         23567999999999999999999997         566788999999


Q ss_pred             ChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCC
Q 042906           78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ  157 (415)
Q Consensus        78 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  157 (415)
                      ||||+|+..|+.+++++|+++|++++             ..|..|.||||+|+..|+.+++++|++.|+++. ..+..|.
T Consensus        75 t~L~~A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~  140 (299)
T 1s70_B           75 TALHQACIDDNVDMVKFLVENGANIN-------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGD  140 (299)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC-------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCC
Confidence            99999999999999999999999877             568899999999999999999999999999876 6788899


Q ss_pred             cHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC
Q 042906          158 TPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN  237 (415)
Q Consensus       158 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  237 (415)
                      ||+++|+..+..+++++++.........                                   ....+.++++       
T Consensus       141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~-----------------------------------~~~~~~~~~~-------  178 (299)
T 1s70_B          141 TPLDIAEEEAMEELLQNEVNRQGVDIEA-----------------------------------ARKEEERIML-------  178 (299)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHH-----------------------------------HHHHHHHHHH-------
T ss_pred             CHHHHHHhcchHHHHHHHHhhcCCCchh-----------------------------------hhhhhhhHHH-------
Confidence            9999999888888888777543221100                                   0000001111       


Q ss_pred             HHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCC
Q 042906          238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE  317 (415)
Q Consensus       238 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  317 (415)
                       ..+..++..+.......+..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       179 -~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  256 (299)
T 1s70_B          179 -RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLC  256 (299)
T ss_dssp             -HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             -HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Confidence             1233445555544445677888999999999999999999998888 58888999999999999999999999999988


Q ss_pred             cccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       318 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      +   ++.+|..|+|||++|... ..+.++.|++.
T Consensus       257 d---~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          257 D---MEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             C---TTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             C---CCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence            7   888899999999999664 45555555544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.2e-40  Score=275.74  Aligned_cols=222  Identities=18%  Similarity=0.224  Sum_probs=107.7

Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcH-HHHHHHHhhccccccCCC
Q 042906           29 TSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNR-AIVSEIVKYVPAVNQAGP  107 (415)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~  107 (415)
                      .+|..+.++|+.||..|+.++|++|++.++..... ....++..+..|.|||+.|+..+.. .++++|++.|++++    
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn----   80 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED-AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN----   80 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTT----
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc-ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC----
Confidence            35666789999999999999999999987643211 2234567778889999999887765 47889999998877    


Q ss_pred             cchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCC
Q 042906          108 LPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTR  187 (415)
Q Consensus       108 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  187 (415)
                               .+|.+|.||||+|+..|+.+++++|++.++++. ..+..|.||+++|+..++.+++++|+           
T Consensus        81 ---------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll-----------  139 (269)
T 4b93_B           81 ---------VTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLL-----------  139 (269)
T ss_dssp             ---------CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHH-----------
T ss_pred             ---------CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHHHHHH-----------
Confidence                     568889999999999999999999998887654 33333333333333333333332222           


Q ss_pred             CCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH
Q 042906          188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA  267 (415)
Q Consensus       188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  267 (415)
                                              +.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+
T Consensus       140 ------------------------~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn-~~~~~g~t~Lh~A~  193 (269)
T 4b93_B          140 ------------------------DSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN-ASNNKGNTALHEAV  193 (269)
T ss_dssp             ------------------------HTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT-CBCTTSCBHHHHHH
T ss_pred             ------------------------HCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-ccccCCCcHHHHHH
Confidence                                    22211 33334444444444444444444444444444444 34444444444444


Q ss_pred             HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906          268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  303 (415)
Q Consensus       268 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  303 (415)
                      ..|+.+++++|+++|++ ++.+|..|+||||+|+++
T Consensus       194 ~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          194 IEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             HTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTT
T ss_pred             HcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhC
Confidence            44444444444444444 244444444444444443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-39  Score=280.22  Aligned_cols=272  Identities=17%  Similarity=0.213  Sum_probs=207.9

Q ss_pred             HHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhccc
Q 042906           40 MAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRD  119 (415)
Q Consensus        40 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  119 (415)
                      .++..++.+.++.++..................+..|.|||+.||..|+.+++++|+++|++++             ..|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~   70 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-------------YAN   70 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-------------CBC
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-------------ccC
Confidence            4667777888888887643321111111122234456799999999999999999999999877             568


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHH
Q 042906          120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVV  199 (415)
Q Consensus       120 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~  199 (415)
                      ..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++.+.+                  
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~------------------  131 (299)
T 1s70_B           71 VDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAH------------------  131 (299)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------------------
Confidence            899999999999999999999999998875 5566677777777776666666666654432                  


Q ss_pred             HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHH
Q 042906          200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI  279 (415)
Q Consensus       200 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  279 (415)
                                        ++..+..|.||||+|+..++.+++++++.............+.+++        ...++.++
T Consensus       132 ------------------~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~--------~~~~~~~l  185 (299)
T 1s70_B          132 ------------------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--------LRDARQWL  185 (299)
T ss_dssp             ------------------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HHHHHHHH
T ss_pred             ------------------CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH--------HHHHHHHH
Confidence                              4455667788888888888888888777653322111111112222        23455566


Q ss_pred             HhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccc
Q 042906          280 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK  359 (415)
Q Consensus       280 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~  359 (415)
                      ..+.......+..|.||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+++ |++++.+
T Consensus       186 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~  261 (299)
T 1s70_B          186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAV  261 (299)
T ss_dssp             HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred             hccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCc
Confidence            666665567788999999999999999999999999988   899999999999999999999999999986 9999999


Q ss_pred             ccccccchhHHHHHHh
Q 042906          360 NRSARNNIALEIAEIT  375 (415)
Q Consensus       360 d~~g~~~t~l~~a~~~  375 (415)
                      |..|  +|||++|.+.
T Consensus       262 d~~g--~t~l~~A~~~  275 (299)
T 1s70_B          262 NKVG--QTAFDVADED  275 (299)
T ss_dssp             CTTS--CCTTTSCCSG
T ss_pred             CCCC--CCHHHHHHHH
Confidence            9999  9999999874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.8e-38  Score=271.16  Aligned_cols=237  Identities=14%  Similarity=0.122  Sum_probs=196.2

Q ss_pred             hhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 042906           68 LLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV  147 (415)
Q Consensus        68 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  147 (415)
                      .++.+|..|.||||+|+..|+.+++++|+++|++++.             .  +|.||||+|+..|+.+++++|++.|++
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~   87 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-------------L--ENEFPLHQAATLEDTKIVKILLFSGLD   87 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-------------C--TTCCHHHHHTTSSSCHHHHHHHHTTCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------------C--CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            3688899999999999999999999999999998772             2  589999999999999999999999987


Q ss_pred             CcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCC-C
Q 042906          148 PSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQ-R  226 (415)
Q Consensus       148 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~  226 (415)
                      +. ..+..|.||||+|+..++.++++                                   +|++.+.+ ++..+..| .
T Consensus        88 ~~-~~d~~g~t~L~~A~~~g~~~~v~-----------------------------------~Ll~~ga~-~~~~~~~g~~  130 (285)
T 3kea_A           88 DS-QFDDKGNTALYYAVDSGNMQTVK-----------------------------------LFVKKNWR-LMFYGKTGWK  130 (285)
T ss_dssp             TT-CCCTTSCCHHHHHHHTTCHHHHH-----------------------------------HHHHHCGG-GGGCSSSGGG
T ss_pred             CC-CcCCCCCcHHHHHHHcCCHHHHH-----------------------------------HHHhcCCC-CCccCCCCCC
Confidence            75 45556666666665555555554                                   44444433 66677778 7


Q ss_pred             CHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH-HHHHHhcCC
Q 042906          227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSI-LHVAAKHGN  305 (415)
Q Consensus       227 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~  305 (415)
                      ||||+|+..|+.+++++|+++|++..  ....|.||||+|+..++.+++++|+++|++ ++.++..|+|| ||+|+..++
T Consensus       131 t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~  207 (285)
T 3kea_A          131 TSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKD  207 (285)
T ss_dssp             SHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCccc--cccCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCC
Confidence            99999999999999999999998764  223899999999999999999999999999 59999999998 999999999


Q ss_pred             HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       306 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      .+++++|+++|++   ++.++       +.|+..|+.+++++|+++ |++++......    .+.++..
T Consensus       208 ~~~v~~Ll~~gad---~~~~~-------~~a~~~~~~~iv~~Ll~~-g~~~~~~~~~~----~~~~~~~  261 (285)
T 3kea_A          208 IEMLQALFKYDIN---IYSAN-------LENVLLDDAEIAKMIIEK-HVEYKSDSYTK----DLDIVKN  261 (285)
T ss_dssp             HHHHHHHTTSCBC---STTTT-------GGGGTTTCHHHHHHHHHH-HHHHTTCTTTT----TCHHHHT
T ss_pred             HHHHHHHHHcCCC---CCCCC-------hhhhhcCCHHHHHHHHHc-CCCCCCccccc----hHHHHhh
Confidence            9999999999988   77776       366889999999999986 99888765443    5555544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=258.05  Aligned_cols=231  Identities=20%  Similarity=0.231  Sum_probs=147.8

Q ss_pred             cccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCC
Q 042906           27 FSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAG  106 (415)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  106 (415)
                      ++..|..|.|+||.|+..|+.+++++|++.         +.+++..+..|.||||+|+..|+.+++++|+++|+++..  
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--   70 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEA---------GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ--   70 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHc---------CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh--
Confidence            455677899999999999999999999998         567788899999999999999999999999999997763  


Q ss_pred             CcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCC
Q 042906          107 PLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT  186 (415)
Q Consensus       107 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  186 (415)
                                ..+..|.||||+|+..++.+++++|++.|+++. ..+..|.||+++|+..++.+++++|++.        
T Consensus        71 ----------~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~--------  131 (240)
T 3eu9_A           71 ----------LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAK--------  131 (240)
T ss_dssp             ----------CBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT--------
T ss_pred             ----------hcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhc--------
Confidence                      234569999999999999999999999987664 3343444444444433333333333322        


Q ss_pred             CCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC-HHHHHHHHHhchhhhhccCCCCCCHHHH
Q 042906          187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN-VKMAQRLLEESKQLAYKRDCNGETPLHL  265 (415)
Q Consensus       187 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  265 (415)
                                                 +.. ++..+..|.||||+|+..++ .+++++|++.+.+++......|.||||+
T Consensus       132 ---------------------------~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~  183 (240)
T 3eu9_A          132 ---------------------------GQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW  183 (240)
T ss_dssp             ---------------------------TCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             ---------------------------CCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHH
Confidence                                       111 23333444455555553333 4445555555544442111244455555


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCC
Q 042906          266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP  316 (415)
Q Consensus       266 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  316 (415)
                      |+..++.+++++|+++|++ ++.++..|.|||++|+..++.+++++|++.+
T Consensus       184 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          184 AVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             HHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            5555555555555555544 2444445555555555555555555555444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.1e-37  Score=255.72  Aligned_cols=194  Identities=25%  Similarity=0.248  Sum_probs=145.8

Q ss_pred             cchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHc
Q 042906          190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN  269 (415)
Q Consensus       190 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  269 (415)
                      .|.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|++.+.......+..|.||||+|+..
T Consensus        24 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  102 (223)
T 2f8y_A           24 TGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL  102 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh
Confidence            444555555555555555555555433 5556677778888888888888888888877644335677788888888888


Q ss_pred             CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHh
Q 042906          270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (415)
Q Consensus       270 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  349 (415)
                      ++.+++++|++++++ ++..+..|.||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+
T Consensus       103 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  178 (223)
T 2f8y_A          103 AVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVLL  178 (223)
T ss_dssp             TCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            888888888888877 477788888888888888888888888888776   7778888888888888888888888888


Q ss_pred             hccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042906          350 RHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR  398 (415)
Q Consensus       350 ~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~  398 (415)
                      ++ |++++.+|..|  .||+++|++       .++.+++++|+++|+..
T Consensus       179 ~~-ga~~~~~~~~g--~t~l~~A~~-------~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          179 DH-FANRDITDHMD--RLPRDIAQE-------RMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HT-TCCTTCCCTTC--CCHHHHHHH-------TTCHHHHHHHHHTTCSS
T ss_pred             Hc-CCCCccccccC--CCHHHHHHH-------hcchHHHHHHHHcCCCc
Confidence            75 78888888888  888888888       46777888888888763

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.4e-37  Score=252.42  Aligned_cols=217  Identities=18%  Similarity=0.216  Sum_probs=192.5

Q ss_pred             CCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHh
Q 042906          133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILG  212 (415)
Q Consensus       133 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  212 (415)
                      |+.+++++|++.|+++....+..|.||||+|+..|+.+++++|++.+.+....  +..|.||||.|+..++.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            56778888888888877666788888888888888888888888877654433  3678899999999999999999999


Q ss_pred             cChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 042906          213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS  292 (415)
Q Consensus       213 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  292 (415)
                      .+...++..+..|.||||+|+..++.+++++|++++.+++ ..+..|.||||+|+..++.+++++|++++++ ++.++..
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~  157 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR  157 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence            8886788889999999999999999999999999999987 6788999999999999999999999999998 5999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcc
Q 042906          293 DRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR  357 (415)
Q Consensus       293 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~  357 (415)
                      |.||||+|+..++.+++++|+++|++   ++.+|..|.|||++|+..++.+++++|+++ |+...
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~~~  218 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLVRS  218 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCSSC
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCC---CccccccCCCHHHHHHHhcchHHHHHHHHc-CCCcc
Confidence            99999999999999999999999987   899999999999999999999999999986 77643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=6.6e-39  Score=279.25  Aligned_cols=283  Identities=15%  Similarity=0.100  Sum_probs=192.4

Q ss_pred             HHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhh--------hcCCCCCCChH
Q 042906            9 LRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL--------RQKNLMDETPL   80 (415)
Q Consensus         9 ~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--------~~~~~~g~t~L   80 (415)
                      +.....+++++|++.|++++..+..|.|+++     |+.+++++|+++|++++........        ........+.+
T Consensus        27 ~~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (327)
T 1sw6_A           27 IITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ  101 (327)
T ss_dssp             EEECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred             hhhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchh
Confidence            3445567799999999999999999999988     9999999999997553221000000        00111122335


Q ss_pred             HHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhc-ccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcH
Q 042906           81 HIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRM-RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP  159 (415)
Q Consensus        81 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  159 (415)
                      |.|+..+..+++++|++.|++++             . +|..|.||||+|+..|+.++|++|++.|+++. ..+..|.||
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn-------------~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~Tp  167 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLN-------------IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESC  167 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSC-------------SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCH
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcc-------------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence            77777777788888888888776             3 57788888888888888888888888887775 566667777


Q ss_pred             HHHHHHcCC---hhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHh--
Q 042906          160 LSIAIDARL---NDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAA--  234 (415)
Q Consensus       160 l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~--  234 (415)
                      ||+|+..++   .+++                                   ..|++.+...++..+..|.||||+|+.  
T Consensus       168 Lh~A~~~g~~~~~~~~-----------------------------------~~ll~~~~~~~~~~d~~g~tpLh~A~~~~  212 (327)
T 1sw6_A          168 LVKAVKSVNNYDSGTF-----------------------------------EALLDYLYPCLILEDSMNRTILHHIIITS  212 (327)
T ss_dssp             HHHHHHSSHHHHTTCH-----------------------------------HHHHHHHGGGGGEECTTCCCHHHHHHHHH
T ss_pred             HHHHHHhcccccHHHH-----------------------------------HHHHHhhhccccCCCCCCCCHHHHHHHHc
Confidence            777776655   3333                                   333333333467788889999999988  


Q ss_pred             --cCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHH
Q 042906          235 --SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI  312 (415)
Q Consensus       235 --~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  312 (415)
                        .|+.+++++|++.+........  +..            +...+.+.+++ ++.++..|.||||+|+.      +++|
T Consensus       213 ~~~g~~~~v~~Ll~~~~~~~~~~~--~~~------------i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~L  271 (327)
T 1sw6_A          213 GMTGCSAAAKYYLDILMGWIVKKQ--NRP------------IQSGTNEKESK-PNDKNGERKDSILENLD------LKWI  271 (327)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHGG--GCC------------EEEC-----------------CHHHHHCS------HHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhccc--chH------------HHhhhhcccCC-cccccccCCChhHHHHH------HHHH
Confidence              8888999999888765442111  000            11112344677 58899999999999986      8899


Q ss_pred             hhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          313 LKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       313 l~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      ++.+     ++.+|..|+||||+|+..|+.+++++|+++ |+|++.+|.+|  +||||+|++
T Consensus       272 l~~~-----~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G--~TpL~~A~~  325 (327)
T 1sw6_A          272 IANM-----LNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSG--LRPVDFGAG  325 (327)
T ss_dssp             HHHT-----TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTS--CCGGGGTCC
T ss_pred             HHhC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCC--CCHHHHHHh
Confidence            9873     889999999999999999999999999986 99999999999  999999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.1e-37  Score=257.87  Aligned_cols=101  Identities=25%  Similarity=0.395  Sum_probs=67.4

Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCc
Q 042906           29 TSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPL  108 (415)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  108 (415)
                      ..|.+|.||||+|+..|+.+++++|++.+..     .+..++..+..|.||||+|+..|+.+++++|+++|++++     
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----   72 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKG-----DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-----   72 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC----------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-----
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhc-----cHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----
Confidence            3566777777777777777777777776321     123566777777777777777777777777777777665     


Q ss_pred             chhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 042906          109 PVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV  147 (415)
Q Consensus       109 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  147 (415)
                              .++..|.||||+|+..|+.+++++|++.+++
T Consensus        73 --------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  103 (236)
T 1ikn_D           73 --------LRDFRGNTPLHLACEQGCLASVGVLTQSCTT  103 (236)
T ss_dssp             --------CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTT
T ss_pred             --------CcCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                    4566777777777777777777777776653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.1e-35  Score=239.53  Aligned_cols=193  Identities=19%  Similarity=0.241  Sum_probs=179.8

Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE  268 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  268 (415)
                      ..+.++|+.|+..|+.+.++.++..++..++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH
Confidence            4567999999999999999999999987789999999999999999999999999999999988 588899999999999


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCC-CcccccccCCCCCCcHHHHHHhcCC-----h
Q 042906          269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP-EMENLINLVDRNGNTPLHLAAMGLH-----S  342 (415)
Q Consensus       269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~g~t~l~~A~~~~~-----~  342 (415)
                      .++.+++++|++.+...++..+..|.||||+|+..++.+++++|++.| .+   ++.+|..|+||||+|+..++     .
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC---TTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCCCCHHHHHHHhccchhhHH
Confidence            999999999997666557999999999999999999999999999998 55   89999999999999999998     9


Q ss_pred             HHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906          343 DVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY  395 (415)
Q Consensus       343 ~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G  395 (415)
                      +++++|+++ |++++.+|..|  +|||++|++       .++.+++++|+++|
T Consensus       159 ~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          159 DIVKLLMEN-GADQSIKDNSG--RTAMDYANQ-------KGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------HTCHHHHHHHHTCC
T ss_pred             HHHHHHHHC-CCCCCccCCCC--CCHHHHHHH-------cCCHhHHHHHHhcC
Confidence            999999986 99999999999  999999999       68899999999876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1e-35  Score=231.81  Aligned_cols=158  Identities=32%  Similarity=0.447  Sum_probs=141.0

Q ss_pred             CHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH
Q 042906          227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW  306 (415)
Q Consensus       227 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  306 (415)
                      +.|+.|++.|+.+++++|++.|++++ .++..|.|||++|+..++.+++++|++.|++ ++.+|..|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn-~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCH
Confidence            46889999999999999999999887 6889999999999999999999999999998 599999999999999999999


Q ss_pred             HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHH
Q 042906          307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHL  386 (415)
Q Consensus       307 ~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~  386 (415)
                      +++++|++.|++   +|.+|..|+||||+|+..|+.+++++|+++ |++++.+|.+|  +|||++|++       .++.+
T Consensus        84 ~~v~~Ll~~gad---vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G--~TpL~~A~~-------~g~~~  150 (169)
T 4gpm_A           84 EVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDG--RTPLDLARE-------HGNEE  150 (169)
T ss_dssp             HHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHH
T ss_pred             HHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC--CCHHHHHHH-------cCCHH
Confidence            999999999887   899999999999999999999999999986 99999999999  999999999       47788


Q ss_pred             HHHHHHHHHHHHh
Q 042906          387 TLKALKTAYAKRA  399 (415)
Q Consensus       387 ~~~~L~~~Ga~~~  399 (415)
                      ++++|+++||+++
T Consensus       151 iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          151 VVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHTC-----
T ss_pred             HHHHHHHCCCCcC
Confidence            9999999999864

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=6.9e-35  Score=245.77  Aligned_cols=196  Identities=21%  Similarity=0.239  Sum_probs=173.8

Q ss_pred             cchhHHHHHHHcCCHH----HHHHHHhcChhhhcc----cccCCCCHHHHHHhc---CCHHHHHHHHHhchhhhhc----
Q 042906          190 DELTLLHFVVMRQNYD----IMVKILGTNKELIDR----LDWHQRNPLHYAAAS---GNVKMAQRLLEESKQLAYK----  254 (415)
Q Consensus       190 ~~~~~l~~a~~~~~~~----~~~~ll~~~~~~~~~----~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~----  254 (415)
                      .|.||||.|+..|+.+    ++++++..+.. ++.    .+..|.||||+|+..   |+.+++++|++.|++....    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            3678889999988887    44555556654 665    788999999999999   9999999999999887522    


Q ss_pred             ------cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCC-------------CCcHHHHHHhcCCHHHHHHHhh-
Q 042906          255 ------RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS-------------DRSILHVAAKHGNWNIVSFILK-  314 (415)
Q Consensus       255 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~l~~A~~~~~~~~~~~Ll~-  314 (415)
                            .+..|.||||+|+..|+.+++++|+++|++ ++..+..             |.||||+|+..|+.+++++|++ 
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                  236799999999999999999999999999 5888876             9999999999999999999999 


Q ss_pred             --CCCcccccccCCCCCCcHHHHHHh--cCChH-------HHHHHhhccCcCc-------cccccccccchhHHHHHHhh
Q 042906          315 --SPEMENLINLVDRNGNTPLHLAAM--GLHSD-------VVFTLSRHKSVNI-------RAKNRSARNNIALEIAEITR  376 (415)
Q Consensus       315 --~~~~~~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~Ll~~~g~~~-------~~~d~~g~~~t~l~~a~~~~  376 (415)
                        .|++   ++.+|..|+||||+|+.  .++.+       ++++|+++ |+++       +.+|..|  +||||+|++  
T Consensus       159 ~~~ga~---~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g--~tpL~~A~~--  230 (256)
T 2etb_A          159 PHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQG--LTPLKLAAK--  230 (256)
T ss_dssp             SSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTS--CCHHHHHHH--
T ss_pred             cccCCC---cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCC--CCHHHHHHH--
Confidence              7877   99999999999999999  78888       99999986 9999       9999999  999999999  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhh
Q 042906          377 ADGKEIQKHLTLKALKTAYAKRAL  400 (415)
Q Consensus       377 ~~~~~~~~~~~~~~L~~~Ga~~~~  400 (415)
                           .++.+++++|+++|+++.-
T Consensus       231 -----~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          231 -----EGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             -----TTCHHHHHHHHHHHHHHHH
T ss_pred             -----hCCHHHHHHHHhCCCCCCC
Confidence                 5889999999999999754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.7e-35  Score=250.65  Aligned_cols=208  Identities=19%  Similarity=0.176  Sum_probs=167.7

Q ss_pred             CCcchhHHHHHHHcCCHHHHHHHHhcCh---hhhc----ccccCCCCHHHHHHhc---CCHHHHHHHHHhchhhhh----
Q 042906          188 LPDELTLLHFVVMRQNYDIMVKILGTNK---ELID----RLDWHQRNPLHYAAAS---GNVKMAQRLLEESKQLAY----  253 (415)
Q Consensus       188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~---~~~~----~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~----  253 (415)
                      +..|.|+|+.|+..|+.++++.|++.+.   ..++    ..+..|.||||+|+..   |+.+++++|++.|++...    
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~   89 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF   89 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence            3567788888888888887777776322   1122    3477899999999986   999999999999876321    


Q ss_pred             --c----cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccC--------------CCCcHHHHHHhcCCHHHHHHHh
Q 042906          254 --K----RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN--------------SDRSILHVAAKHGNWNIVSFIL  313 (415)
Q Consensus       254 --~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~l~~A~~~~~~~~~~~Ll  313 (415)
                        .    .+..|.||||+|+..|+.+++++|+++|++ ++..+.              .|.||||+|+..|+.+++++|+
T Consensus        90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (273)
T 2pnn_A           90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL  168 (273)
T ss_dssp             HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred             hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence              1    456899999999999999999999999999 588886              7999999999999999999999


Q ss_pred             h---CCCcccccccCCCCCCcHHHHHHhcCC---------hHHHHHHhhccCcCcc-------ccccccccchhHHHHHH
Q 042906          314 K---SPEMENLINLVDRNGNTPLHLAAMGLH---------SDVVFTLSRHKSVNIR-------AKNRSARNNIALEIAEI  374 (415)
Q Consensus       314 ~---~~~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~g~~~~-------~~d~~g~~~t~l~~a~~  374 (415)
                      +   .|++   ++.+|..|+||||+|+..++         .+++++|+++ |++++       .+|..|  +||||+|++
T Consensus       169 ~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g--~TpL~~A~~  242 (273)
T 2pnn_A          169 QNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKG--LTPLALAAS  242 (273)
T ss_dssp             HCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTS--CCHHHHHHH
T ss_pred             hcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCC--CCHHHHHHH
Confidence            9   7777   99999999999999999998         7999999986 99997       599999  999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHH
Q 042906          375 TRADGKEIQKHLTLKALKTAYA-KRALSAEELQQKR  409 (415)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~~Ga-~~~~~~~~~~~~~  409 (415)
                             .++.+++++|+++|| ||.........+.
T Consensus       243 -------~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          243 -------SGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             -------TTCHHHHHHHHHHHTC-------------
T ss_pred             -------hChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence                   588999999999999 7888777666554

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.5e-35  Score=246.71  Aligned_cols=216  Identities=22%  Similarity=0.295  Sum_probs=165.6

Q ss_pred             cccCCCChHHHHHHHcCCHHHHHHHHhCCCCC---cccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchh
Q 042906          117 MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP---SSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELT  193 (415)
Q Consensus       117 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  193 (415)
                      .+|..|.||||+|+..|+.+++++|++.+...   ....+.                                   .|.|
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----------------------------------~g~t   47 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-----------------------------------LQQT   47 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-----------------------------------TCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC-----------------------------------CCCC
Confidence            34556666666666666666666666555421   123333                                   4455


Q ss_pred             HHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhh-----hhccCCCCCCHHHHHHH
Q 042906          194 LLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL-----AYKRDCNGETPLHLAAE  268 (415)
Q Consensus       194 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~  268 (415)
                      |||+|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++.+.+.     ....+..|.||||+|+.
T Consensus        48 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~  126 (236)
T 1ikn_D           48 PLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI  126 (236)
T ss_dssp             HHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHH
Confidence            55555555555555555555543 6667778899999999999999999999988642     23577889999999999


Q ss_pred             cCCHHHHHHHHHhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHH
Q 042906          269 NGKLKVLKLLINKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT  347 (415)
Q Consensus       269 ~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  347 (415)
                      .++.+++++|+++|++ ++.++. .|.||||+|+..++.+++++|+++|++   ++.+|..|+|||++|+..++.+++++
T Consensus       127 ~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~  202 (236)
T 1ikn_D          127 HGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPSTRIQQQ  202 (236)
T ss_dssp             TTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGGCTTSSCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcccCCCCCHHHHHHccCchHHHHH
Confidence            9999999999999999 588887 999999999999999999999999988   89999999999999999999999999


Q ss_pred             HhhccCcCcc--ccccccccchhHHHHHHh
Q 042906          348 LSRHKSVNIR--AKNRSARNNIALEIAEIT  375 (415)
Q Consensus       348 Ll~~~g~~~~--~~d~~g~~~t~l~~a~~~  375 (415)
                      |+++ |++..  ..+.+|  .||.+.+.+.
T Consensus       203 Ll~~-ga~~~~~~~~~~~--~~~~~~~~~~  229 (236)
T 1ikn_D          203 LGQL-TLENLQMLPESED--EESYDTESEF  229 (236)
T ss_dssp             HHTT-SCGGGSSCCCCCT--TTCCCCC---
T ss_pred             HHHc-chhhhhcCCccch--HHHHhhhccc
Confidence            9986 99877  888888  9999888773

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.9e-34  Score=223.55  Aligned_cols=160  Identities=26%  Similarity=0.388  Sum_probs=146.8

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      ..+|+.|++.|++++|+.|++.|++++.+|..|+||||+|+..++.+++++|++.         +++++.+|..|+||||
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~---------gad~~~~d~~g~TpLh   75 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK---------GADVNAKDSDGRTPLH   75 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc---------ccchhhhccCCCCHHH
Confidence            3679999999999999999999999999999999999999999999999999998         6778899999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~  161 (415)
                      +|+..|+.+++++|+++|++++             .+|..|.||||+|+..|+.+++++|++.|+++. ..+..|.|||+
T Consensus        76 ~A~~~g~~~~v~~Ll~~gadvn-------------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~  141 (169)
T 4gpm_A           76 HAAENGHKEVVKLLISKGADVN-------------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLD  141 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHHCcCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHH
Confidence            9999999999999999999887             578899999999999999999999999999886 78899999999


Q ss_pred             HHHHcCChhHHHHHhhhCCCCcc
Q 042906          162 IAIDARLNDSACFIIDKSPESLN  184 (415)
Q Consensus       162 ~a~~~~~~~~~~~ll~~~~~~~~  184 (415)
                      +|+..++.+++++|++.+.+...
T Consensus       142 ~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          142 LAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHTTCHHHHHHHHTC------
T ss_pred             HHHHcCCHHHHHHHHHCCCCcCC
Confidence            99999999999999998876543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.3e-35  Score=249.39  Aligned_cols=233  Identities=20%  Similarity=0.249  Sum_probs=168.2

Q ss_pred             hHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHc---CCHHHHHHHH
Q 042906           66 YSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTN---QHKRVIRILV  142 (415)
Q Consensus        66 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~---~~~~~v~~Ll  142 (415)
                      ++..+..|..|+||||+|+..|+.++|+.|++.+.+....-.     ......+..|.||||+|+..   |+.+++++|+
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-----~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll   77 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLT-----DSEFKDPETGKTCLLKAMLNLHNGQNDTIALLL   77 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTT-----SGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccC-----CcccccCcCCCCHHHHHHHHHhcCChHHHHHHH
Confidence            344567889999999999999999999999986553321100     00113477899999999986   9999999999


Q ss_pred             hCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccc
Q 042906          143 EKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLD  222 (415)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  222 (415)
                      +.|++...                     +.                                   .++...   ....+
T Consensus        78 ~~ga~~~~---------------------~~-----------------------------------~~i~~~---~~~~d   98 (273)
T 2pnn_A           78 DVARKTDS---------------------LK-----------------------------------QFVNAS---YTDSY   98 (273)
T ss_dssp             HHHHHTTC---------------------HH-----------------------------------HHHTCC---CCSTT
T ss_pred             Hhhccccc---------------------hh-----------------------------------HHhhcc---ccccc
Confidence            88763321                     00                                   111111   12234


Q ss_pred             cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCC--------------CCCCHHHHHHHcCCHHHHHHHHH---hCCCc
Q 042906          223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDC--------------NGETPLHLAAENGKLKVLKLLIN---KYPDA  285 (415)
Q Consensus       223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~  285 (415)
                      ..|.||||+|+..|+.+++++|+++|++++ ..+.              .|.||||+|+..++.+++++|++   .|++ 
T Consensus        99 ~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-  176 (273)
T 2pnn_A           99 YKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-  176 (273)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-
Confidence            567788888888888888888888887776 3443              79999999999999999999999   8888 


Q ss_pred             cccccCCCCcHHHHHHhcCC---------HHHHHHHhhCCCcccccc-------cCCCCCCcHHHHHHhcCChHHHHHHh
Q 042906          286 IEIRDNSDRSILHVAAKHGN---------WNIVSFILKSPEMENLIN-------LVDRNGNTPLHLAAMGLHSDVVFTLS  349 (415)
Q Consensus       286 ~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~~~~-------~~~~~g~t~l~~A~~~~~~~~~~~Ll  349 (415)
                      ++.+|..|+||||+|+..++         .+++++|++.|++   ++       .+|..|+||||+|+..|+.+++++|+
T Consensus       177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  253 (273)
T 2pnn_A          177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK---LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL  253 (273)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh---cccccccccccCCCCCCHHHHHHHhChHHHHHHHH
Confidence            69999999999999999888         8999999999887   54       58999999999999999999999999


Q ss_pred             hccCc-CccccccccccchhHH
Q 042906          350 RHKSV-NIRAKNRSARNNIALE  370 (415)
Q Consensus       350 ~~~g~-~~~~~d~~g~~~t~l~  370 (415)
                      ++ |+ |+......+  .+|-+
T Consensus       254 ~~-ga~dp~~~~~~~--~~~~~  272 (273)
T 2pnn_A          254 QR-EIHEPECRHAAA--HHHHH  272 (273)
T ss_dssp             HH-HTC----------------
T ss_pred             HC-CCCCchhhhhhh--hhccC
Confidence            87 77 899888888  76643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-35  Score=255.83  Aligned_cols=246  Identities=18%  Similarity=0.158  Sum_probs=171.4

Q ss_pred             cCChhHHHHHHhhccccccC-----------------CCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhc-C
Q 042906           11 NGDENKIKQLALRQNIFSTS-----------------SPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ-K   72 (415)
Q Consensus        11 ~g~~~~v~~ll~~~~~~~~~-----------------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-~   72 (415)
                      .|++++|+.|++.|.+.+..                 .....+.+|.|+..+..+++++|++.         +.+++. +
T Consensus        57 ~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---------g~dvn~~~  127 (327)
T 1sw6_A           57 NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT---------QLNLNIPV  127 (327)
T ss_dssp             HHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS---------CCCSCSCC
T ss_pred             CchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc---------CCCccccc
Confidence            48999999999999775541                 11222345788888888999999887         677888 8


Q ss_pred             CCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCC---HHHHHHHHhCCCCCc
Q 042906           73 NLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH---KRVIRILVEKDSVPS  149 (415)
Q Consensus        73 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~---~~~v~~Ll~~~~~~~  149 (415)
                      |..|+||||+|+..|+.++|++|+++|++++             .+|..|.||||+|+..|+   .++++.|++.+....
T Consensus       128 d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-------------~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~  194 (327)
T 1sw6_A          128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL-------------YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL  194 (327)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc
Confidence            9999999999999999999999999999887             578899999999999998   677888887764334


Q ss_pred             ccccccCCcHHHHHHH----cCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCC
Q 042906          150 SYINKAYQTPLSIAID----ARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQ  225 (415)
Q Consensus       150 ~~~~~~~~~~l~~a~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  225 (415)
                      ...+..|.||||+|+.    .++.+++++|++..                           ...+......         
T Consensus       195 ~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~---------------------------~~~~~~~~~~---------  238 (327)
T 1sw6_A          195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL---------------------------MGWIVKKQNR---------  238 (327)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH---------------------------HHHHHHGGGC---------
T ss_pred             cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHH---------------------------HHHHhcccch---------
Confidence            4677788888888887    66666666666321                           0111111100         


Q ss_pred             CCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC
Q 042906          226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN  305 (415)
Q Consensus       226 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  305 (415)
                       .            +...+.+.+.+++ ..+..|.||||.|+.      +++|+++  + ++.+|..|+||||+|+..|+
T Consensus       239 -~------------i~~~~~~~g~~~~-~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~  295 (327)
T 1sw6_A          239 -P------------IQSGTNEKESKPN-DKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGN  295 (327)
T ss_dssp             -C------------EEEC-----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCC
T ss_pred             -H------------HHhhhhcccCCcc-cccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCC
Confidence             0            0011234466666 578889999999885      8888888  3 57888999999999999999


Q ss_pred             HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcC
Q 042906          306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL  340 (415)
Q Consensus       306 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~  340 (415)
                      .+++++|+++|++   ++.+|..|+||||+|++.|
T Consensus       296 ~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          296 ISIVDALLDYGAD---PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHHHTTCC---TTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcC
Confidence            9999999999888   8999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.9e-32  Score=222.15  Aligned_cols=193  Identities=19%  Similarity=0.269  Sum_probs=155.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHH
Q 042906          120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVV  199 (415)
Q Consensus       120 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~  199 (415)
                      ..+.||||.|+..|+.++++.|+..+.......+..|.||||+|+..++.+++++|++.                     
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------------   61 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR---------------------   61 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---------------------
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---------------------
Confidence            46788888888888888888888887633335566666666666666665555555544                     


Q ss_pred             HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHH
Q 042906          200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI  279 (415)
Q Consensus       200 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  279 (415)
                                    +.+ ++..+..|.||||+|+..++.+++++|++.+.......+..|.||||+|+..++.+++++|+
T Consensus        62 --------------g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  126 (201)
T 3hra_A           62 --------------GAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL  126 (201)
T ss_dssp             --------------TCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred             --------------CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence                          332 55566778899999999999999999996655333367888999999999999999999999


Q ss_pred             HhCCCccccccCCCCcHHHHHHhcCC-----HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          280 NKYPDAIEIRDNSDRSILHVAAKHGN-----WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       280 ~~~~~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      +++...++.++..|+||||+|+..++     .+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++
T Consensus       127 ~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD---QSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            99943368999999999999999888     8999999999887   889999999999999999999999999975

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.3e-33  Score=238.62  Aligned_cols=199  Identities=19%  Similarity=0.150  Sum_probs=169.4

Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHh----cChhhhcccc----cCCCCHHHHHH---hcCCHHHHHHHHHhchhhhh----
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILG----TNKELIDRLD----WHQRNPLHYAA---ASGNVKMAQRLLEESKQLAY----  253 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~----~~~~t~l~~a~---~~~~~~~~~~Ll~~~~~~~~----  253 (415)
                      ..+.++|+.|+..|+.+.++.+++    .+.. ++..+    ..|.||||+|+   ..|+.+++++|++.|++...    
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            456788888888888886555554    5543 44333    67999999999   77999999999999876321    


Q ss_pred             ------ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc--------------CCCCcHHHHHHhcCCHHHHHHHh
Q 042906          254 ------KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD--------------NSDRSILHVAAKHGNWNIVSFIL  313 (415)
Q Consensus       254 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~l~~A~~~~~~~~~~~Ll  313 (415)
                            ..+..|.||||+|+..|+.+++++|+++|++ ++..+              ..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                  2344899999999999999999999999999 58888              68999999999999999999999


Q ss_pred             h---CCCcccccccCCCCCCcHHHHHHhcCC---------hHHHHHHhhccCcCc-------cccccccccchhHHHHHH
Q 042906          314 K---SPEMENLINLVDRNGNTPLHLAAMGLH---------SDVVFTLSRHKSVNI-------RAKNRSARNNIALEIAEI  374 (415)
Q Consensus       314 ~---~~~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~g~~~-------~~~d~~g~~~t~l~~a~~  374 (415)
                      +   .|++   ++.+|..|+||||+|+..++         .+++++|+++ |+++       +.+|..|  +||||+|++
T Consensus       161 ~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g--~tpL~~A~~  234 (260)
T 3jxi_A          161 ENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDG--LSPLMMAAK  234 (260)
T ss_dssp             HCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTS--CCHHHHHHH
T ss_pred             hccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCC--CCHHHHHHH
Confidence            9   7777   99999999999999999888         6999999986 9999       7899999  999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906          375 TRADGKEIQKHLTLKALKTAYAKRALSA  402 (415)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~~Ga~~~~~~  402 (415)
                             .++.+++++|+++|+++....
T Consensus       235 -------~g~~~~v~~Ll~~g~~~~~~~  255 (260)
T 3jxi_A          235 -------TGKIGIFQHIIRREIADAAAH  255 (260)
T ss_dssp             -------TTCHHHHHHHHHHHHHHHC--
T ss_pred             -------cCCHHHHHHHHHhCCCccccc
Confidence                   588999999999999976543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=7.6e-32  Score=227.13  Aligned_cols=220  Identities=16%  Similarity=0.145  Sum_probs=160.4

Q ss_pred             hHHHHHHHcCChh----HHHHHHhhcccccc----CCCCCCCHHHHHHHh---CCHHHHHHHHhccchHHHHH--HhHhh
Q 042906            3 QELLEVLRNGDEN----KIKQLALRQNIFST----SSPGGNTVLHMAVRF---RNQQVIREILRQQNFIALRL--HYSLL   69 (415)
Q Consensus         3 ~~L~~A~~~g~~~----~v~~ll~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~--~~~~~   69 (415)
                      ++||.|+..|+.+    ++++|++.|.+++.    .+..|.||||+|+..   |+.+++++|++.+++.+...  .....
T Consensus         4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   83 (256)
T 2etb_A            4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC   83 (256)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence            6899999999997    56777779999998    899999999999999   99999999999854321100  00001


Q ss_pred             hcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHh---CCC
Q 042906           70 RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVE---KDS  146 (415)
Q Consensus        70 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~---~~~  146 (415)
                      ...|..|.||||+|+..|+.+++++|+++|++++...............+..|.||||+|+..|+.+++++|++   .|+
T Consensus        84 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga  163 (256)
T 2etb_A           84 TDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA  163 (256)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence            12447799999999999999999999999999874322111111111222349999999999999999999999   888


Q ss_pred             CCcccccccCCcHHHHHHH--cCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhh------
Q 042906          147 VPSSYINKAYQTPLSIAID--ARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELI------  218 (415)
Q Consensus       147 ~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~------  218 (415)
                      ++. ..+..|.||||+|+.  .++.+....+                            .+++++|++.+.+ +      
T Consensus       164 ~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~----------------------------~~iv~~Ll~~ga~-~~~~~~~  213 (256)
T 2etb_A          164 SLE-ATDSLGNTVLHALVMIADNSPENSALV----------------------------IHMYDGLLQMGAR-LCPTVQL  213 (256)
T ss_dssp             CTT-CCCTTSCCHHHHHHHHCCSCHHHHHHH----------------------------HHHHHHHHHHHHH-HSTTCCG
T ss_pred             CcC-ccCCCCCCHHHHHHHcccCCchhhHHH----------------------------HHHHHHHHHcCCC-ccccccc
Confidence            776 677888888888887  5555522211                            1244555555444 3      


Q ss_pred             -cccccCCCCHHHHHHhcCCHHHHHHHHHhchhhh
Q 042906          219 -DRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA  252 (415)
Q Consensus       219 -~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  252 (415)
                       +..+..|.||||+|+..|+.+++++|+++|....
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence             6667777777777777777777777777776654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=6.5e-32  Score=213.06  Aligned_cols=170  Identities=24%  Similarity=0.294  Sum_probs=149.2

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcC
Q 042906          225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG  304 (415)
Q Consensus       225 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  304 (415)
                      +.+|||.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++++++ ++..+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence            458999999999999999999999885557888999999999999999999999999998 5999999999999999999


Q ss_pred             CHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHH
Q 042906          305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQK  384 (415)
Q Consensus       305 ~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~  384 (415)
                      +.+++++|++.|.+   ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|  +|||++|++       .++
T Consensus        81 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~~~  147 (172)
T 3v30_A           81 YTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSG--YTPMDLAVA-------LGY  147 (172)
T ss_dssp             CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------HTC
T ss_pred             CHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC--CCHHHHHHH-------hCc
Confidence            99999999999887   899999999999999999999999999986 99999999999  999999999       578


Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHH
Q 042906          385 HLTLKALKTAYAKRALSAEELQQK  408 (415)
Q Consensus       385 ~~~~~~L~~~Ga~~~~~~~~~~~~  408 (415)
                      .+++++|+++|++....+..+.+|
T Consensus       148 ~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          148 RKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCC
Confidence            899999999999987766555443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=4.1e-32  Score=218.25  Aligned_cols=166  Identities=24%  Similarity=0.285  Sum_probs=156.7

Q ss_pred             hhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc
Q 042906          216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS  295 (415)
Q Consensus       216 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  295 (415)
                      ...+..+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++++++ ++..+..|.|
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t  103 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKT  103 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCC
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCc
Confidence            3467788999999999999999999999999999887 6788999999999999999999999999998 5999999999


Q ss_pred             HHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       296 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      |||+|+..++.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|  .|||++|+. 
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-  176 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTG--LTAEASARI-  176 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTS--CBHHHHHHH-
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCC--CCHHHHHHH-
Confidence            99999999999999999999988   899999999999999999999999999986 99999999999  999999999 


Q ss_pred             hhhhHHHHHHHHHHHHHHHHH
Q 042906          376 RADGKEIQKHLTLKALKTAYA  396 (415)
Q Consensus       376 ~~~~~~~~~~~~~~~L~~~Ga  396 (415)
                            .++.+++++|+++|.
T Consensus       177 ------~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          177 ------FGRQEVIKIFTEVRR  191 (192)
T ss_dssp             ------TTCHHHHHHHHHHHH
T ss_pred             ------hCcHHHHHHHHhccC
Confidence                  588899999999883

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=2.1e-31  Score=209.09  Aligned_cols=160  Identities=24%  Similarity=0.313  Sum_probs=151.8

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906          224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  303 (415)
Q Consensus       224 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  303 (415)
                      .|.||||.|+..|+.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++++++ ++..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence            47899999999999999999999998876 6888999999999999999999999999998 599999999999999999


Q ss_pred             CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHH
Q 042906          304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQ  383 (415)
Q Consensus       304 ~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~  383 (415)
                      ++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|  +|||++|++       .+
T Consensus        80 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g--~t~l~~A~~-------~~  146 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSG--YNSMDLAVA-------LG  146 (167)
T ss_dssp             TCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------HT
T ss_pred             CCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCC--CCHHHHHHH-------cC
Confidence            999999999999887   899999999999999999999999999986 99999999999  999999999       58


Q ss_pred             HHHHHHHHHHHHHHH
Q 042906          384 KHLTLKALKTAYAKR  398 (415)
Q Consensus       384 ~~~~~~~L~~~Ga~~  398 (415)
                      +.+++++|+++|++.
T Consensus       147 ~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          147 YRSVQQVIESHLLKL  161 (167)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            899999999999985

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=2.6e-32  Score=231.72  Aligned_cols=191  Identities=19%  Similarity=0.224  Sum_probs=172.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcChh-hhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH---
Q 042906          192 LTLLHFVVMRQNYDIMVKILGTNKE-LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA---  267 (415)
Q Consensus       192 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~---  267 (415)
                      .++++.|+..++.+.++.++..... .++..|..|.||||+|+..|+.+++++|++.|+......+..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            3667788888888888888876543 377889999999999999999999999999998333378999999999999   


Q ss_pred             --HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHH
Q 042906          268 --ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV  345 (415)
Q Consensus       268 --~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  345 (415)
                        ..++.+++++|++.+.. .+..+..|+||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..|+.+++
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~~~iv  232 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGHKEIA  232 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCCHHHH
Confidence              67899999999999988 588899999999999999999999999999988   999999999999999999999999


Q ss_pred             HHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906          346 FTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY  395 (415)
Q Consensus       346 ~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G  395 (415)
                      ++|++..|++++.+|.+|  +|||++|++       .++.+++++|++++
T Consensus       233 ~~Ll~~~gad~~~~d~~g--~TpL~~A~~-------~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          233 GLLLAVPSCDISLTDRDG--STALMVALD-------AGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHTSTTCCTTCCCTTS--CCHHHHHHH-------HTCHHHHHHHHHHC
T ss_pred             HHHHhcCCCCCcCcCCCC--CCHHHHHHH-------cCCHHHHHHHHhcc
Confidence            999985699999999999  999999999       68899999999874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.4e-31  Score=209.83  Aligned_cols=170  Identities=21%  Similarity=0.231  Sum_probs=154.5

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcC
Q 042906          191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENG  270 (415)
Q Consensus       191 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  270 (415)
                      +.+||+.|+..|+.+.+++++..+...++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCC
Confidence            34789999999999999999999988888999999999999999999999999999999887 67889999999999999


Q ss_pred             CHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906          271 KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (415)
Q Consensus       271 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  350 (415)
                      +.+++++|++++++ ++.++..|+||||+|+..++.+++++|+++|++   ++.+|..|+||||+|+..++.+++++|++
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            99999999999999 699999999999999999999999999999988   89999999999999999999999999998


Q ss_pred             ccCcCccccccccccchh
Q 042906          351 HKSVNIRAKNRSARNNIA  368 (415)
Q Consensus       351 ~~g~~~~~~d~~g~~~t~  368 (415)
                      + |+++..++..|  .||
T Consensus       157 ~-~~~~~~~~~~~--~~p  171 (172)
T 3v30_A          157 H-ILKLFQSNLVP--ADP  171 (172)
T ss_dssp             H-HHHHSCC---------
T ss_pred             H-HHHHhcccCCC--CCC
Confidence            6 99999999998  887

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=8.3e-34  Score=248.74  Aligned_cols=306  Identities=12%  Similarity=0.067  Sum_probs=186.6

Q ss_pred             cCChhHHHHHHhhccccccCCCCCCCHHHHHHH-hCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcH
Q 042906           11 NGDENKIKQLALRQNIFSTSSPGGNTVLHMAVR-FRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNR   89 (415)
Q Consensus        11 ~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~   89 (415)
                      .+..+.+..++....+++..  .+.+++++|.. .++.++++++++.+.                +++||||+|+..|+.
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~--~~ll~~~~a~~~~~~~~~~~~l~~~g~----------------~~~T~Lh~Aa~~G~~  105 (376)
T 2aja_A           44 LSYKEAIHIFLPGTKNMEQV--RQLLCLYYAHYNRNAKQLWSDAHKKGI----------------KSEVICFVAAITGCS  105 (376)
T ss_dssp             SCHHHHHHHCCCCSSHHHHH--HHHHHHHHHHTTTTCTTHHHHHHHHTC----------------CHHHHHHHHHHHCCH
T ss_pred             ccHHHHHHHHhcCCCCHHHH--HHHHHHHHHHhcCCCHHHHHHHHHcCC----------------CcCCHHHHHHHcCCH
Confidence            33344444444444333221  23456666665 467777777777632                234888888888888


Q ss_pred             HHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCc--ccccccCCcHHHHHHHcC
Q 042906           90 AIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS--SYINKAYQTPLSIAIDAR  167 (415)
Q Consensus        90 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~~~~~l~~a~~~~  167 (415)
                      ++|++|+++|+....          ....+..|.||||+|+..|+.++|++|++.|++..  ...... .||||+|+..|
T Consensus       106 e~v~~Ll~~ga~~~~----------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G  174 (376)
T 2aja_A          106 SALDTLCLLLTSDEI----------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG  174 (376)
T ss_dssp             HHHHHHTTC--CCSS----------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT
T ss_pred             HHHHHHHHcCCcHHH----------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC
Confidence            888888887762110          01123456778888888888888888888886421  122222 78888888888


Q ss_pred             ChhHHHHHhhhCCCCccCCCCCcchhHHHHHH-HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHH
Q 042906          168 LNDSACFIIDKSPESLNTTRLPDELTLLHFVV-MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE  246 (415)
Q Consensus       168 ~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  246 (415)
                      +.+++++|++.+.+......+..|.||||.|+ ..|+.+++++|++.+..        +.|||+.|+..|+.+++++|++
T Consensus       175 ~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~  246 (376)
T 2aja_A          175 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIAR  246 (376)
T ss_dssp             CHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHH
T ss_pred             CHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHh
Confidence            88888888877665432112256778888888 88888888888885432        6688999999999999999998


Q ss_pred             hchhhhhccCCCCCCHHHHHHHcCCHHH------------HHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhh
Q 042906          247 ESKQLAYKRDCNGETPLHLAAENGKLKV------------LKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK  314 (415)
Q Consensus       247 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~------------v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  314 (415)
                      +|++... .+    ++++.|+..|+.++            ++.|+..+..                   +..+.+++|++
T Consensus       247 ~ga~~~~-~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~-------------------~~~~~~~~Ll~  302 (376)
T 2aja_A          247 HVNRLKE-MH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE-------------------VLLDDIRFLLS  302 (376)
T ss_dssp             HHHHHHH-HH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCG-------------------GGHHHHHHHHT
T ss_pred             cCccccc-cc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchh-------------------hHHHHHHHHHh
Confidence            8887653 22    36667777776653            3444444321                   23566677776


Q ss_pred             CCCccccc--ccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHH
Q 042906          315 SPEMENLI--NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKA  390 (415)
Q Consensus       315 ~~~~~~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~  390 (415)
                      .+......  ......+.|||++|+..|+.+++++|++. |   .+++..|  .|++++|..       .++.+++++
T Consensus       303 ~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~-~---~v~~~~~--~~~~~~~~~-------~~~~~~~~~  367 (376)
T 2aja_A          303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI-P---SVLALTK--ANNYYINET-------GGRLDLRAV  367 (376)
T ss_dssp             STTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS-H---HHHHSCC---------------------------
T ss_pred             ChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC-h---HHHHHHH--Hhccccccc-------cccccHHHH
Confidence            54322211  12234567899999999999999999975 2   6667778  899999888       466666554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=4.1e-33  Score=244.37  Aligned_cols=283  Identities=11%  Similarity=0.103  Sum_probs=194.4

Q ss_pred             HHHHH-cCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHH
Q 042906            6 LEVLR-NGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAA   84 (415)
Q Consensus         6 ~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~   84 (415)
                      +.|.. .++.+.+++++..|.+       +.||||+|++.|+.+++++|++.++..      ...+..+..|.||||+|+
T Consensus        70 ~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~------~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           70 YYAHYNRNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSD------EIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CC------SSCC--CHHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcH------HHHHHhccCCCCHHHHHH
Confidence            34444 5788888888888754       359999999999999999999985410      011223445778999999


Q ss_pred             HhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc-cccccCCcHHHHH
Q 042906           85 RIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS-YINKAYQTPLSIA  163 (415)
Q Consensus        85 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~~l~~a  163 (415)
                      .+|+.++|++|+++|+++...        .++..+   .||||+|+..|+.+++++|++.|+++.. ..+..|.||||+|
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~--------~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~A  205 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMA--------MIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA  205 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHH--------HHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccc--------ccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHH
Confidence            999999999999999753210        011222   8999999999999999999999987652 2677899999999


Q ss_pred             H-HcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHH-
Q 042906          164 I-DARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA-  241 (415)
Q Consensus       164 ~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~-  241 (415)
                      + ..|+.+++++|++.+         ..+.||++.|+..|+.+++++|++.+.. ++..+    ++++.|+..|+.+++ 
T Consensus       206 a~~~G~~eiv~~Ll~~g---------a~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~  271 (376)
T 2aja_A          206 AVGRGHHNVINFLLDCP---------VMLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVT  271 (376)
T ss_dssp             HSTTCCHHHHHHHTTSH---------HHHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSS
T ss_pred             HHHCCCHHHHHHHHhCC---------CccchHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhc
Confidence            9 999999999999744         2488999999999999999999988765 33333    467778888876643 


Q ss_pred             -----------HHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc----cccccCCCCcHHHHHHhcCCH
Q 042906          242 -----------QRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA----IEIRDNSDRSILHVAAKHGNW  306 (415)
Q Consensus       242 -----------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~A~~~~~~  306 (415)
                                 +.|+..+.                   .+..+.+++|++.+...    .......+.|+||+|+..|+.
T Consensus       272 ~~~~~~~~~~~~~li~~~~-------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~  332 (376)
T 2aja_A          272 KSECLQGFYMLRNLIRRND-------------------EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ  332 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT
T ss_pred             HHhhhhhHHHHHHHHHcch-------------------hhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcH
Confidence                       33443321                   12367778888653211    012234567899999999999


Q ss_pred             HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       307 ~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      +++++|++.|      ..++..++|++.+|...|+.++.+.-+.+
T Consensus       333 e~v~lLl~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          333 GACALLLSIP------SVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             THHHHHTTSH------HHHHSCC----------------------
T ss_pred             HHHHHHHcCh------HHHHHHHHhccccccccccccHHHHHHHH
Confidence            9999999875      45778899999999999999998876654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.2e-31  Score=209.46  Aligned_cols=157  Identities=24%  Similarity=0.366  Sum_probs=133.4

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcC
Q 042906          225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG  304 (415)
Q Consensus       225 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  304 (415)
                      ..|||+.|+..|+.+++++|++.+.+++ ..+..|.||||+|+. ++.+++++|++++++ ++.++..|.||||+|+..+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            4578888888888888888888888776 577888899998888 889999999988888 5888888899999999999


Q ss_pred             CHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC-ccccccccccchhHHHHHHhhhhhHHHH
Q 042906          305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN-IRAKNRSARNNIALEIAEITRADGKEIQ  383 (415)
Q Consensus       305 ~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~-~~~~d~~g~~~t~l~~a~~~~~~~~~~~  383 (415)
                      +.+++++|+++|.+   ++.+|..|+||||+|+..|+.+++++|+++ |++ ++.+|..|  +|||++|++       .+
T Consensus        82 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g--~t~l~~A~~-------~~  148 (162)
T 1ihb_A           82 FLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKG--DTACDLARL-------YG  148 (162)
T ss_dssp             CHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTS--CCHHHHHHH-------TT
T ss_pred             CHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCC--CcHHHHHHH-------cC
Confidence            99999999988877   888888899999999999999999999976 676 68888888  899999988       47


Q ss_pred             HHHHHHHHHHHHHH
Q 042906          384 KHLTLKALKTAYAK  397 (415)
Q Consensus       384 ~~~~~~~L~~~Ga~  397 (415)
                      +.+++++|+++||+
T Consensus       149 ~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          149 RNEVVSLMQANGAG  162 (162)
T ss_dssp             CHHHHHHHHHTC--
T ss_pred             CHHHHHHHHHhCCC
Confidence            78899999998886

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=3.6e-31  Score=207.92  Aligned_cols=159  Identities=29%  Similarity=0.381  Sum_probs=137.1

Q ss_pred             ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906          222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA  301 (415)
Q Consensus       222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~  301 (415)
                      ...+.++++.|+..|+.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|++++++ ++..+..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHH
Confidence            3445678999999999999999999888877 5788889999999999999999999999888 5888888999999999


Q ss_pred             hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHH
Q 042906          302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE  381 (415)
Q Consensus       302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~  381 (415)
                      ..++.+++++|+++|++   ++.+|..|.||||+|+..++.+++++|+++ |++++.+|..|  .|||++|++       
T Consensus        89 ~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g--~t~l~~A~~-------  155 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFG--KTAFDISID-------  155 (169)
T ss_dssp             HTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------
T ss_pred             HcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCC--CCHHHHHHH-------
Confidence            99999999999998877   888888999999999999999999999986 89999999999  999999988       


Q ss_pred             HHHHHHHHHHHHHH
Q 042906          382 IQKHLTLKALKTAY  395 (415)
Q Consensus       382 ~~~~~~~~~L~~~G  395 (415)
                      .++.+++++|+++|
T Consensus       156 ~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          156 NGNEDLAEILQKLN  169 (169)
T ss_dssp             TTCHHHHHHHHTC-
T ss_pred             hCCHHHHHHHHHcC
Confidence            47788999998876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.7e-31  Score=225.66  Aligned_cols=209  Identities=18%  Similarity=0.244  Sum_probs=168.9

Q ss_pred             cCCCChHHHHHHHcCCHHH----HHHHHhCCCCCcccc---cccCCcHHHHHH---HcCChhHHHHHhhhCCCCccCCCC
Q 042906          119 DIEGNTPLHNAVTNQHKRV----IRILVEKDSVPSSYI---NKAYQTPLSIAI---DARLNDSACFIIDKSPESLNTTRL  188 (415)
Q Consensus       119 ~~~g~t~l~~A~~~~~~~~----v~~Ll~~~~~~~~~~---~~~~~~~l~~a~---~~~~~~~~~~ll~~~~~~~~~~~~  188 (415)
                      +..++|+||.|+..|+.+.    +++|++.+.+.....   +..|.||||+|+   ..|+.+++++|++.+.+....   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~---   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM---   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence            5678999999999999985    444444887765221   256888888888   668888888888654321110   


Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccC------------
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD------------  256 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~------------  256 (415)
                                         ..++.   ...+..+..|.||||+|+..|+.+++++|+++|++++ ..+            
T Consensus        79 -------------------~~~~~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~  135 (260)
T 3jxi_A           79 -------------------REFIN---SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGG  135 (260)
T ss_dssp             -------------------HHHHT---CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCC
T ss_pred             -------------------Hhhhc---ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccc
Confidence                               11111   1134456689999999999999999999999999887 455            


Q ss_pred             --CCCCCHHHHHHHcCCHHHHHHHHH---hCCCccccccCCCCcHHHHHHhcCC---------HHHHHHHhhCCCccccc
Q 042906          257 --CNGETPLHLAAENGKLKVLKLLIN---KYPDAIEIRDNSDRSILHVAAKHGN---------WNIVSFILKSPEMENLI  322 (415)
Q Consensus       257 --~~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~~~  322 (415)
                        ..|.||||+|+..|+.+++++|++   .|++ ++.+|..|+||||+|+..++         .+++++|+++|++   +
T Consensus       136 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~  211 (260)
T 3jxi_A          136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK---L  211 (260)
T ss_dssp             SCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH---H
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc---c
Confidence              579999999999999999999999   8888 69999999999999998887         7999999999877   5


Q ss_pred             -------ccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccc
Q 042906          323 -------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA  358 (415)
Q Consensus       323 -------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~  358 (415)
                             +.+|..|+||||+|+..|+.+++++|+++ |.+...
T Consensus       212 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~  253 (260)
T 3jxi_A          212 FPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADAA  253 (260)
T ss_dssp             CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHHC
T ss_pred             ccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh-CCCccc
Confidence                   67999999999999999999999999987 665543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=4.8e-31  Score=209.36  Aligned_cols=163  Identities=23%  Similarity=0.318  Sum_probs=139.5

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906          224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  303 (415)
Q Consensus       224 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  303 (415)
                      .+.++|+.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++++++ ++.++..|+||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            4668899999999999999999886554446788889999999999999999999999888 588888999999999999


Q ss_pred             CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHH
Q 042906          304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQ  383 (415)
Q Consensus       304 ~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~  383 (415)
                      ++.+++++|+++|++   ++.+|..|.||||+|+..++.+++++|+++ |++++.+|..|  .|||++|++       .+
T Consensus        83 ~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~tpl~~A~~-------~~  149 (179)
T 3f6q_A           83 GHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYG--EMPVDKAKA-------PL  149 (179)
T ss_dssp             TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTS--CCGGGGSCH-------HH
T ss_pred             CCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCC--CCcHHHHHH-------HH
Confidence            999999999998877   888889999999999999999999999986 89999999999  999999988       57


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 042906          384 KHLTLKALKTAYAKRAL  400 (415)
Q Consensus       384 ~~~~~~~L~~~Ga~~~~  400 (415)
                      +.+++++|+++||+++.
T Consensus       150 ~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          150 RELLRERAEKMGQNLNR  166 (179)
T ss_dssp             HHHHHHHHHHTTCCCSC
T ss_pred             HHHHHHHHHHhhcCccc
Confidence            88899999999988654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=4.8e-31  Score=223.91  Aligned_cols=192  Identities=21%  Similarity=0.299  Sum_probs=160.3

Q ss_pred             cHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHH----
Q 042906          158 TPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAA----  233 (415)
Q Consensus       158 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~----  233 (415)
                      +++|.|+..+..+.++.+++...+......+..|.||||+|+..|+.+++++|++.+...++..+..|.||||+|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            3444455555555555554433332233344677788888888888888888888887568888999999999999    


Q ss_pred             -hcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHH
Q 042906          234 -ASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI  312 (415)
Q Consensus       234 -~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  312 (415)
                       ..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence             6688999999999997776 5788899999999999999999999999999 699999999999999999999999999


Q ss_pred             hh-CCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCc
Q 042906          313 LK-SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV  354 (415)
Q Consensus       313 l~-~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~  354 (415)
                      ++ .|++   ++.+|..|+||||+|+..|+.+++++|+++.++
T Consensus       236 l~~~gad---~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          236 LAVPSCD---ISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             HTSTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             HhcCCCC---CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            99 7877   899999999999999999999999999987654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.5e-30  Score=203.17  Aligned_cols=156  Identities=23%  Similarity=0.264  Sum_probs=145.2

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      +++|+.|+..|+.+.+++|++.|.+++..+..|.||||+|+. |+.+++++|++.         +.+++.++..|.||||
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~   75 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR---------GANPDLKDRTGFAVIH   75 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT---------TCCTTCCCTTSCCHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc---------CCCCCCCCCCCCCHHH
Confidence            578999999999999999999999999999999999999999 999999999998         5677888999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~  161 (415)
                      +|+..|+.+++++|+++|++++             .+|..|.||||+|+..++.+++++|++.|++.....+..|.||++
T Consensus        76 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~  142 (162)
T 1ihb_A           76 DAARAGFLDTLQTLLEFQADVN-------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  142 (162)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHH
Confidence            9999999999999999999877             568899999999999999999999999999876688999999999


Q ss_pred             HHHHcCChhHHHHHhhhCC
Q 042906          162 IAIDARLNDSACFIIDKSP  180 (415)
Q Consensus       162 ~a~~~~~~~~~~~ll~~~~  180 (415)
                      +|+..++.+++++|++++.
T Consensus       143 ~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          143 LARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHcCCHHHHHHHHHhCC
Confidence            9999999999999998765

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2.3e-31  Score=208.35  Aligned_cols=160  Identities=24%  Similarity=0.311  Sum_probs=132.1

Q ss_pred             ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906          222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA  301 (415)
Q Consensus       222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~  301 (415)
                      +..+.++|+.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++++++ ++.++..|+||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHH
Confidence            345668888888888888888888865544445677788899999988999999999988888 5888888999999999


Q ss_pred             hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHH
Q 042906          302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE  381 (415)
Q Consensus       302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~  381 (415)
                      ..++.+++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|  +|||++|.+       
T Consensus        84 ~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~a~~-------  150 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDG--NTPLDLVKD-------  150 (165)
T ss_dssp             HTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCTGGGSCT-------
T ss_pred             HcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCC--CChhHhHhc-------
Confidence            99999999999988877   888888899999999999999999999976 89999999999  899998766       


Q ss_pred             HHHHHHHHHHHHHHH
Q 042906          382 IQKHLTLKALKTAYA  396 (415)
Q Consensus       382 ~~~~~~~~~L~~~Ga  396 (415)
                       ++.+++++|++.||
T Consensus       151 -~~~~i~~~L~~~gA  164 (165)
T 3twr_A          151 -GDTDIQDLLRGDAA  164 (165)
T ss_dssp             -TCHHHHHHHHTC--
T ss_pred             -CChHHHHHHhhccc
Confidence             44578999988886

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=9.5e-30  Score=199.78  Aligned_cols=153  Identities=26%  Similarity=0.356  Sum_probs=140.8

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      +.|+.|++.|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.         +.+++..+..|.||||+
T Consensus        16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E           16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN---------GADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHH
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCccCCCCCCHHHH
Confidence            579999999999999999999999999999999999999999999999999997         56678889999999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHH
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~  162 (415)
                      |+..|+.+++++|+++|++++             .+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||+++
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~  152 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADVN-------------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDI  152 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHH
Confidence            999999999999999998876             568889999999999999999999999999876 678889999999


Q ss_pred             HHHcCChhHHHHHhhh
Q 042906          163 AIDARLNDSACFIIDK  178 (415)
Q Consensus       163 a~~~~~~~~~~~ll~~  178 (415)
                      |+..++.+++++|++.
T Consensus       153 A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          153 SIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HHHTTCHHHHHHHHTC
T ss_pred             HHHhCCHHHHHHHHHc
Confidence            9999999999999864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=3.3e-30  Score=198.91  Aligned_cols=150  Identities=27%  Similarity=0.329  Sum_probs=134.6

Q ss_pred             CCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC
Q 042906          226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN  305 (415)
Q Consensus       226 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  305 (415)
                      .++|+.|+..|+.+++++|++.|.+..  .+..|.||||+|+..++.+++++|++.+++ ++.++..|+||||+|+..++
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCh
Confidence            478999999999999999999988664  578899999999999999999999999988 58889999999999999999


Q ss_pred             HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHH
Q 042906          306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKH  385 (415)
Q Consensus       306 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~  385 (415)
                      .+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|  .|||++|++       .++.
T Consensus        80 ~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~~~~  146 (153)
T 1awc_B           80 ANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFC--KTAFDISID-------NGNE  146 (153)
T ss_dssp             HHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCH
T ss_pred             HHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC--CCHHHHHHH-------cCCH
Confidence            9999999999877   888999999999999999999999999986 99999999999  999999999       4777


Q ss_pred             HHHHHH
Q 042906          386 LTLKAL  391 (415)
Q Consensus       386 ~~~~~L  391 (415)
                      +++++|
T Consensus       147 ~i~~~L  152 (153)
T 1awc_B          147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888877

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.1e-29  Score=194.36  Aligned_cols=150  Identities=27%  Similarity=0.384  Sum_probs=139.3

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      .++|+.|++.|+.+.+++|++.|.+++ .+..|.||||+|+..|+.+++++|++.         +.+++.++..|+||||
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~   72 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA---------GVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT---------TCCTTCCCTTCCCHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCCCCCCCCCHHH
Confidence            468999999999999999999998876 578899999999999999999999997         5677889999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~  161 (415)
                      +|+..|+.+++++|+++|++++             .+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||++
T Consensus        73 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~  138 (153)
T 1awc_B           73 MAASEGHANIVEVLLKHGADVN-------------AKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFD  138 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHH
Confidence            9999999999999999999877             568899999999999999999999999999876 67889999999


Q ss_pred             HHHHcCChhHHHHH
Q 042906          162 IAIDARLNDSACFI  175 (415)
Q Consensus       162 ~a~~~~~~~~~~~l  175 (415)
                      +|+..++.+++++|
T Consensus       139 ~A~~~~~~~i~~~L  152 (153)
T 1awc_B          139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999886

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=6.2e-30  Score=202.94  Aligned_cols=169  Identities=18%  Similarity=0.260  Sum_probs=157.2

Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE  268 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  268 (415)
                      ..+.++|+.|+..|+.+++++|++.++..++..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence            3566889999999999999999999887789999999999999999999999999999999988 678999999999999


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906          269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (415)
Q Consensus       269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  348 (415)
                      .++.+++++|++++++ ++.+|..|.||||+|+..++.+++++|+++|++   ++.+|..|.|||++|+..++.+++++|
T Consensus        82 ~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~L  157 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRELLRERA  157 (179)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999 699999999999999999999999999999988   899999999999999999999999999


Q ss_pred             hhccCcCcccccccc
Q 042906          349 SRHKSVNIRAKNRSA  363 (415)
Q Consensus       349 l~~~g~~~~~~d~~g  363 (415)
                      ++. |++++..+.++
T Consensus       158 ~~~-g~~~~~~~~~~  171 (179)
T 3f6q_A          158 EKM-GQNLNRIPYKD  171 (179)
T ss_dssp             HHT-TCCCSCBCCCC
T ss_pred             HHh-hcCcccCCccc
Confidence            986 99999988776

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.7e-29  Score=202.96  Aligned_cols=158  Identities=20%  Similarity=0.212  Sum_probs=144.3

Q ss_pred             CCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH
Q 042906          188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA  267 (415)
Q Consensus       188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  267 (415)
                      +..|.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|+++|++++ ..+..|.||||+|+
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSI  109 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHH
Confidence            35677788888888888888888877654 67788889999999999999999999999999887 67889999999999


Q ss_pred             HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHH
Q 042906          268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT  347 (415)
Q Consensus       268 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  347 (415)
                      ..++.+++++|++++++ ++.++..|.||||+|+..++.+++++|+++|++   ++.+|..|.|||++|+..|+.+++++
T Consensus       110 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            99999999999999999 599999999999999999999999999999988   89999999999999999999999999


Q ss_pred             Hhhc
Q 042906          348 LSRH  351 (415)
Q Consensus       348 Ll~~  351 (415)
                      |+++
T Consensus       186 Ll~~  189 (192)
T 2rfm_A          186 FTEV  189 (192)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.9e-29  Score=197.88  Aligned_cols=161  Identities=19%  Similarity=0.204  Sum_probs=149.0

Q ss_pred             cchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHc
Q 042906          190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN  269 (415)
Q Consensus       190 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  269 (415)
                      .+.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHc
Confidence            456899999999999999999988755 78889999999999999999999999999999887 5788999999999999


Q ss_pred             CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHh
Q 042906          270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (415)
Q Consensus       270 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  349 (415)
                      ++.+++++|++++++ ++.++..|.||||+|+..++.+++++|+++|++   ++.+|..|+|||++|+..|+.+++++|+
T Consensus        80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999999 599999999999999999999999999999988   8999999999999999999999999999


Q ss_pred             hccCcCcc
Q 042906          350 RHKSVNIR  357 (415)
Q Consensus       350 ~~~g~~~~  357 (415)
                      ++ ++++.
T Consensus       156 ~~-~~~~~  162 (167)
T 3v31_A          156 SH-LLKLL  162 (167)
T ss_dssp             HH-HHHHC
T ss_pred             HH-HHHHH
Confidence            86 55543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.3e-29  Score=196.09  Aligned_cols=159  Identities=24%  Similarity=0.321  Sum_probs=147.9

Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE  268 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  268 (415)
                      ..+.++|+.|+..|+.+++++|++..+...+..+..|.||||+|+..++.+++++|+++|.+++ ..+..|.||||+|+.
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNACS   84 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHH
Confidence            5788999999999999999999998877788888889999999999999999999999999987 688899999999999


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906          269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (415)
Q Consensus       269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  348 (415)
                      .++.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+++|++   ++.+|..|+|||++|.. ++.+++++|
T Consensus        85 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           85 YGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             cCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc-CChHHHHHH
Confidence            9999999999999999 599999999999999999999999999999988   89999999999999877 899999999


Q ss_pred             hhccCc
Q 042906          349 SRHKSV  354 (415)
Q Consensus       349 l~~~g~  354 (415)
                      +++ |+
T Consensus       160 ~~~-gA  164 (165)
T 3twr_A          160 RGD-AA  164 (165)
T ss_dssp             HTC---
T ss_pred             hhc-cc
Confidence            975 54

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.3e-28  Score=190.72  Aligned_cols=154  Identities=26%  Similarity=0.340  Sum_probs=142.9

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcC
Q 042906          191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENG  270 (415)
Q Consensus       191 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  270 (415)
                      +.++|+.|+..|+.+.+++|++..+..++..+..|.||||+ +..|+.+++++|+++|++++ ..+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcC
Confidence            56899999999999999999998555688889999999999 99999999999999999887 68889999999999999


Q ss_pred             CHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906          271 KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (415)
Q Consensus       271 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  350 (415)
                      +.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++. ++   ++.+|..|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99999999999998 599999999999999999999999999998 65   89999999999999999999999999997


Q ss_pred             c
Q 042906          351 H  351 (415)
Q Consensus       351 ~  351 (415)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.9e-29  Score=194.45  Aligned_cols=153  Identities=24%  Similarity=0.287  Sum_probs=141.8

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHhch-hhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906          225 QRNPLHYAAASGNVKMAQRLLEESK-QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  303 (415)
Q Consensus       225 ~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  303 (415)
                      +.|+|+.|+..|+.+++++|++... +++ ..+..|.||||+ +..++.+++++|+++|++ ++.++..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPD-ALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTT-CCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcc-ccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence            4589999999999999999999932 444 678899999999 999999999999999999 599999999999999999


Q ss_pred             CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHH
Q 042906          304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQ  383 (415)
Q Consensus       304 ~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~  383 (415)
                      |+.+++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+++  ++++.+|..|  .|||++|++       .+
T Consensus        79 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g--~t~l~~A~~-------~~  144 (156)
T 1bd8_A           79 GFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARG--LTPLELALQ-------RG  144 (156)
T ss_dssp             TCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTS--CCHHHHHHH-------SC
T ss_pred             CcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCC--CCHHHHHHH-------cC
Confidence            999999999999987   899999999999999999999999999986  9999999999  999999999       57


Q ss_pred             HHHHHHHHHHH
Q 042906          384 KHLTLKALKTA  394 (415)
Q Consensus       384 ~~~~~~~L~~~  394 (415)
                      +.+++++|+++
T Consensus       145 ~~~~v~~Ll~~  155 (156)
T 1bd8_A          145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             cHHHHHHHHhh
Confidence            88899999863

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=7.3e-30  Score=212.18  Aligned_cols=164  Identities=18%  Similarity=0.116  Sum_probs=118.4

Q ss_pred             cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 042906          223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK  302 (415)
Q Consensus       223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~  302 (415)
                      ..|.||||.|+..+..+.++.|+++|++++  .+..|.||||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            458899999999999999999999999887  356789999999999999999999999998 69999999999999999


Q ss_pred             cCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccc-hhHHHH--HHhhhhh
Q 042906          303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNN-IALEIA--EITRADG  379 (415)
Q Consensus       303 ~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~-t~l~~a--~~~~~~~  379 (415)
                      .|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++ |++++.++..|  . ||||+|  +.     
T Consensus        80 ~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~--~~t~l~~a~~~~-----  148 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSD--MQTAADKCEEME-----  148 (239)
T ss_dssp             HTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSS--CCCHHHHCCSSS-----
T ss_pred             cCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCC--CcchHHHHHHhh-----
Confidence            9999999999999887   899999999999999999999999999986 99999999888  6 999999  44     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcH
Q 042906          380 KEIQKHLTLKALKTAYAKRALSA  402 (415)
Q Consensus       380 ~~~~~~~~~~~L~~~Ga~~~~~~  402 (415)
                        .++.+++++|+++||+++..+
T Consensus       149 --~g~~~~~~~Ll~~~a~~~~~~  169 (239)
T 1ycs_B          149 --EGYTQCSQFLYGVQEKMGIMN  169 (239)
T ss_dssp             --TTCCCHHHHHHHHHHHTTTTG
T ss_pred             --hccHHHHHHHHHhhhcccccc
Confidence              356779999999999987653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=5.3e-29  Score=197.22  Aligned_cols=164  Identities=17%  Similarity=0.127  Sum_probs=141.9

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH----HHHHHHHHhCCCccccccCCCCcHHHHH
Q 042906          225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL----KVLKLLINKYPDAIEIRDNSDRSILHVA  300 (415)
Q Consensus       225 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~l~~A  300 (415)
                      ++++++.|++.|+.+.++.++..+....  .+..|.||||+|+..++.    +++++|+++|++ ++.++..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence            4578999999999999999988764432  236799999999999875    599999999999 699999999999999


Q ss_pred             HhcCC------HHHHHHHhhCCCcccccccCCCCCC-cHHHHHHhcCC-----hHHHHHHhhccCcCccccccccccchh
Q 042906          301 AKHGN------WNIVSFILKSPEMENLINLVDRNGN-TPLHLAAMGLH-----SDVVFTLSRHKSVNIRAKNRSARNNIA  368 (415)
Q Consensus       301 ~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~g~-t~l~~A~~~~~-----~~~~~~Ll~~~g~~~~~~d~~g~~~t~  368 (415)
                      +..++      .+++++|+++|++   +|.+|..|+ ||||+|+..+.     .+++++|++..|++++.+|..|  +||
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G--~Tp  157 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG--LTA  157 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTS--CCH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCC--CCH
Confidence            99886      6789999999988   999999999 99999999554     4689999984599999999999  999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHH
Q 042906          369 LEIAEITRADGKEIQKHLTLKALKTAYAKRALSAE  403 (415)
Q Consensus       369 l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~  403 (415)
                      ||+|++       .++.+++++|.++..+.+++++
T Consensus       158 L~~A~~-------~~~~~~v~~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          158 LEFVKR-------CQKPIALKMMEDYIKKYNLKEN  185 (186)
T ss_dssp             HHHHHT-------TTCHHHHHHHHHHHHHHTCCC-
T ss_pred             HHHHHH-------cCCHHHHHHHHHHHHHHhcccC
Confidence            999999       5788899999999988776643

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.8e-30  Score=211.07  Aligned_cols=176  Identities=13%  Similarity=0.147  Sum_probs=150.0

Q ss_pred             CCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH
Q 042906          188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA  267 (415)
Q Consensus       188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  267 (415)
                      ...+.++|+.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g~tpLh~A~   95 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAA   95 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH
Confidence            35677889999999999999999987765 78888899999999999999999999999998887 57889999999999


Q ss_pred             HcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHH--HhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHH
Q 042906          268 ENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVA--AKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDV  344 (415)
Q Consensus       268 ~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  344 (415)
                      ..|+.+++++|++.|++ ++..+ ..|+||||+|  +..++.+++++|++.|++   ++.+|..|.||++.++.....  
T Consensus        96 ~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~~l~~~~~~~~~--  169 (229)
T 2vge_A           96 SCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAEFGD--  169 (229)
T ss_dssp             HTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGGGEEEESSCBCCSSTT--
T ss_pred             HcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccCCchHHHHHHhhcccc--
Confidence            99999999999999998 47765 6899999999  899999999999999887   888888899998865544433  


Q ss_pred             HHHHhhccCcC--ccccccccccchhHHHHHHh
Q 042906          345 VFTLSRHKSVN--IRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       345 ~~~Ll~~~g~~--~~~~d~~g~~~t~l~~a~~~  375 (415)
                       ++|++. |++  ++.+|..|  +||||+|++.
T Consensus       170 -~~ll~~-ga~~~~~~~d~~G--~TpL~~A~~~  198 (229)
T 2vge_A          170 -ELSFRE-GESVTVLRRDGPE--ETDWWWAALH  198 (229)
T ss_dssp             -BCCBCT-TCEEEEEESSCTT--CSSEEEEEET
T ss_pred             -ccCccc-cccccccccCCCc--ccHHHHHHHc
Confidence             566764 888  77888889  9999999873

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=9.6e-31  Score=215.23  Aligned_cols=143  Identities=19%  Similarity=0.143  Sum_probs=114.4

Q ss_pred             HHHHHhhccccccCC---CCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHH
Q 042906           17 IKQLALRQNIFSTSS---PGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS   93 (415)
Q Consensus        17 v~~ll~~~~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~   93 (415)
                      ++.|++.|.+.+..+   .+|.||||+|+..|+.+++++|++.         +.+++.+|..|+||||+|+..|+.++++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~d~~g~tpLh~A~~~g~~~~v~   71 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE---------MNDPSQPNEEGITALHNAICGANYSIVD   71 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH---------SSCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc---------CCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            467888887766444   4567889999999999999999997         5677889999999999999999999999


Q ss_pred             HHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHH--HHcCChhH
Q 042906           94 EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA--IDARLNDS  171 (415)
Q Consensus        94 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a--~~~~~~~~  171 (415)
                      +|+++|++++             .+|..|.||||+|+..|+.+++++|++.|+++....+..|.|||++|  +..++.++
T Consensus        72 ~Ll~~ga~~n-------------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~  138 (229)
T 2vge_A           72 FLITAGANVN-------------SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADC  138 (229)
T ss_dssp             HHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHH
T ss_pred             HHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHH
Confidence            9999999877             56889999999999999999999999999988755457888888888  77777777


Q ss_pred             HHHHhhhCCC
Q 042906          172 ACFIIDKSPE  181 (415)
Q Consensus       172 ~~~ll~~~~~  181 (415)
                      +++|++.+.+
T Consensus       139 v~~Ll~~ga~  148 (229)
T 2vge_A          139 ATYLADVEQS  148 (229)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHcCCC
Confidence            7777765543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.4e-28  Score=184.26  Aligned_cols=129  Identities=18%  Similarity=0.191  Sum_probs=108.4

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCC-CCcH
Q 042906          254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRN-GNTP  332 (415)
Q Consensus       254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-g~t~  332 (415)
                      ..+..|.||||+|+..++.+++++|++++++ ++.++..|+||||+|+. ++.+++++|+++|++   ++.+|.. |+||
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~~g~t~   81 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---PNCADPATLTRP   81 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---SSCCBTTTTBCH
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---CCCcCCCCCCCH
Confidence            4677788888888888888888888888877 58888888888888888 888888888888777   7888888 8888


Q ss_pred             HHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          333 LHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       333 l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      ||+|+..|+.+++++|+++ |++++.+|..|  +||||+|++       .++.+++++|+++|||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g--~tpl~~A~~-------~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRA-GARLDVCDAWG--RLPVDLAEE-------QGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHT-CCCCCCCSSSS--SCHHHHHHH-------HTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCccCCCC--CCHHHHHHH-------cCCHHHHHHHHHcCCC
Confidence            8888888888888888875 88888888888  888888888       5677888888888874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=5.7e-28  Score=186.87  Aligned_cols=147  Identities=22%  Similarity=0.214  Sum_probs=118.0

Q ss_pred             cccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc-HH
Q 042906          219 DRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS-IL  297 (415)
Q Consensus       219 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-~l  297 (415)
                      ...+..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+ .++.+++++|+++|++ ++.++..|+| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence            3456678999999999999999999999999887 57889999999985 9999999999999999 6999999999 99


Q ss_pred             HHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       298 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      |+|+..++.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|  .||.+.+.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~~~~~~~  153 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHAR--IDAAEGPSD  153 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C---------------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCc--CcccccCCC
Confidence            999999999999999999988   899999999999999999999999999986 99999999999  999886654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=4.6e-28  Score=201.30  Aligned_cols=176  Identities=15%  Similarity=0.085  Sum_probs=128.8

Q ss_pred             CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906          189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE  268 (415)
Q Consensus       189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  268 (415)
                      ..|.|||+.|+..++.+.++.|++.+.. ++. +..+.||||.|+..|+.+++++|++.|++++ ..+..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence            4578899999999999999999988865 443 3568899999999999999999999999877 678999999999999


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCC-cHHHHH--HhcCChHHH
Q 042906          269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGN-TPLHLA--AMGLHSDVV  345 (415)
Q Consensus       269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~  345 (415)
                      .|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++   ++.++..|. ||||+|  +..|+.+++
T Consensus        80 ~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccHHHH
Confidence            9999999999999999 699999999999999999999999999999988   888888777 999999  788999999


Q ss_pred             HHHhhccCcCcccccc---------ccccchhHHHHHH
Q 042906          346 FTLSRHKSVNIRAKNR---------SARNNIALEIAEI  374 (415)
Q Consensus       346 ~~Ll~~~g~~~~~~d~---------~g~~~t~l~~a~~  374 (415)
                      ++|+++ |++++..+.         .+  .|+++++.+
T Consensus       156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~--~~~~eLa~~  190 (239)
T 1ycs_B          156 QFLYGV-QEKMGIMNKGVIYALWDYEP--QNDDELPMK  190 (239)
T ss_dssp             HHHHHH-HHHTTTTGGGEEEESSCBCC--SSTTBCCBC
T ss_pred             HHHHHh-hhcccccccceEEEEeccCC--CCCCccccc
Confidence            999986 899888744         45  666666554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=5.7e-28  Score=186.84  Aligned_cols=144  Identities=17%  Similarity=0.161  Sum_probs=118.8

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCc-H
Q 042906          254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNT-P  332 (415)
Q Consensus       254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t-~  332 (415)
                      ..+..|.||||+|+..|+.+++++|++++++ ++..+..|+||||+|+ .++.+++++|++.|++   ++.+|..|+| |
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~---~~~~d~~g~ttp   81 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLTRP   81 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCCCH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC---CCCcCCCCCcHH
Confidence            3567899999999999999999999999998 6999999999999985 9999999999999987   9999999999 9


Q ss_pred             HHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhh
Q 042906          333 LHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVS  412 (415)
Q Consensus       333 l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~~~~~~~~~~  412 (415)
                      ||+|+..|+.+++++|+++ |++++.+|..|  +||||+|++       .++.+++++|+++||+++..+..+..+.+..
T Consensus        82 L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g--~tpl~~A~~-------~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRA-GARLDVRDAWG--RLPVDLAEE-------LGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHH-TCCSSCCCTTC--CCHHHHHHH-------HTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHc-CCCCcccCCCC--CCHHHHHHH-------hCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999986 99999999999  999999999       5788999999999999999988888777643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=3.4e-27  Score=177.96  Aligned_cols=132  Identities=23%  Similarity=0.266  Sum_probs=124.6

Q ss_pred             hhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCC-CCc
Q 042906          217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS-DRS  295 (415)
Q Consensus       217 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t  295 (415)
                      .++..+..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+. ++.+++++|++++++ ++.++.. |+|
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t   80 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTR   80 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBC
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCC
Confidence            467788899999999999999999999999999887 678999999999999 999999999999999 5999999 999


Q ss_pred             HHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906          296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (415)
Q Consensus       296 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~  355 (415)
                      |||+|+..++.+++++|+++|++   ++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            99999999999999999999988   899999999999999999999999999986 775

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.7e-26  Score=172.06  Aligned_cols=126  Identities=39%  Similarity=0.561  Sum_probs=95.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHH
Q 042906          258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA  337 (415)
Q Consensus       258 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~  337 (415)
                      +|.||||.|+..++.+++++|++++++ ++..+..|.||||+|+..++.+++++|++.|.+   ++.++..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCcHHHHHH
Confidence            367777777777777777777777777 477777777777777777777777777777766   6777777777777777


Q ss_pred             hcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          338 MGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       338 ~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      ..++.+++++|+++ |++++.+|..|  .|||++|++       .+..+++++|+++||+
T Consensus        77 ~~~~~~~~~~Ll~~-g~~~~~~~~~g--~t~l~~A~~-------~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           77 RNGHLEVVKLLLEA-GADVNAKDKNG--RTPLHLAAR-------NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHHTCC
T ss_pred             HcChHHHHHHHHHc-CCCCcccCCCC--CCHHHHHHH-------cCcHHHHHHHHHcCCC
Confidence            77777777777765 77777777777  777777777       4667777777777764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=3.6e-27  Score=186.70  Aligned_cols=161  Identities=14%  Similarity=0.132  Sum_probs=141.3

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcChhhhcccc-cCCCCHHHHHHhcCCH----HHHHHHHHhchhhhhccCCCCCCHHHH
Q 042906          191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLD-WHQRNPLHYAAASGNV----KMAQRLLEESKQLAYKRDCNGETPLHL  265 (415)
Q Consensus       191 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~g~t~L~~  265 (415)
                      ++++++.|+..|+.+.++.++..+.   +..+ ..|.||||+|+..++.    +++++|+++|++++ .++..|.||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHHH
Confidence            4578999999999999998887663   3334 6799999999999975    59999999999998 688999999999


Q ss_pred             HHHcCC------HHHHHHHHHhCCCccccccCCCC-cHHHHHHhcC-----CHHHHHHHhh-CCCcccccccCCCCCCcH
Q 042906          266 AAENGK------LKVLKLLINKYPDAIEIRDNSDR-SILHVAAKHG-----NWNIVSFILK-SPEMENLINLVDRNGNTP  332 (415)
Q Consensus       266 A~~~~~------~~~v~~Ll~~~~~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~~g~t~  332 (415)
                      |+..++      .+++++|+++|++ ++.+|..|+ ||||+|+..+     ..+++++|++ .|++   ++.+|..|+||
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~~G~Tp  157 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTA  157 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCTTSCCH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCCCCCCH
Confidence            999887      6889999999999 699999999 9999999944     4569999999 8988   99999999999


Q ss_pred             HHHHHhcCChHHHHHHhhccCcCccccc
Q 042906          333 LHLAAMGLHSDVVFTLSRHKSVNIRAKN  360 (415)
Q Consensus       333 l~~A~~~~~~~~~~~Ll~~~g~~~~~~d  360 (415)
                      ||+|+..++.+++++|++. ..+.+.++
T Consensus       158 L~~A~~~~~~~~v~~L~~~-~~~~~~~~  184 (186)
T 3t8k_A          158 LEFVKRCQKPIALKMMEDY-IKKYNLKE  184 (186)
T ss_dssp             HHHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence            9999999999999999975 56666655

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=2.2e-26  Score=173.45  Aligned_cols=126  Identities=26%  Similarity=0.328  Sum_probs=89.0

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHH
Q 042906          256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHL  335 (415)
Q Consensus       256 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~  335 (415)
                      ...+.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+++|++   ++.+|..|.||||+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~   86 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---VNAVDAIGFTPLHL   86 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHH
Confidence            34456777777777777777777777766 467777777777777777777777777777665   66777777777777


Q ss_pred             HHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906          336 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY  395 (415)
Q Consensus       336 A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G  395 (415)
                      |+..++.+++++|+++ |++++.+|..|  +|||++|++       .++.+++++|+++|
T Consensus        87 A~~~~~~~~v~~Ll~~-g~~~~~~~~~g--~tpl~~A~~-------~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKH-GADVNAQDKFG--KTAFDISIG-------NGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHc-CCCCcCcCCCC--CCHHHHHHH-------CCCHHHHHHHHHcC
Confidence            7777777777777765 77777777777  777777777       35666777777665

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=2.2e-25  Score=167.97  Aligned_cols=121  Identities=24%  Similarity=0.336  Sum_probs=113.8

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      ++|+.|++.|+.++++.|++.|.+++..+..|.||||+|+..|+.+++++|++.         +++++.+|..|.||||+
T Consensus        16 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~d~~g~t~L~~   86 (136)
T 2jab_A           16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN---------GADVNAVDAIGFTPLHL   86 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---------TCCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCcCCCCCCCHHHH
Confidence            679999999999999999999999999999999999999999999999999997         56788899999999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCC
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD  145 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  145 (415)
                      |+..|+.+++++|+++|++++             .+|..|.||||+|+..++.+++++|++.|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADVN-------------AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCc-------------CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999876             56889999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=3.7e-25  Score=164.74  Aligned_cols=126  Identities=41%  Similarity=0.655  Sum_probs=119.1

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906          224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  303 (415)
Q Consensus       224 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  303 (415)
                      +|.||||.|+..|+.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++.+++ ++.++..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence            47899999999999999999999998887 5788999999999999999999999999998 599999999999999999


Q ss_pred             CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906          304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (415)
Q Consensus       304 ~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~  355 (415)
                      ++.+++++|+++|.+   ++.+|..|.|||++|+..++.+++++|+++ |+|
T Consensus        79 ~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred             ChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence            999999999999887   889999999999999999999999999986 875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=3.7e-26  Score=172.60  Aligned_cols=131  Identities=23%  Similarity=0.301  Sum_probs=116.5

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHH
Q 042906          254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPL  333 (415)
Q Consensus       254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l  333 (415)
                      .++..|.||||+|+..++.+++++|++.+++ ++.++..|+||||+|+..++.+++++|+++|++   ++.+|..|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence            4688999999999999999999999999998 599999999999999999999999999999887   899999999999


Q ss_pred             HHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042906          334 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR  398 (415)
Q Consensus       334 ~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~  398 (415)
                      |+|+..++.+++++|+++ |++++.+|..|  .|||++|..       .+..+++++|.+.++..
T Consensus        81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~tpl~~A~~-------~~~~~~l~~l~~~~~s~  135 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSY-GASRNAVNIFG--LRPVDYTDD-------ESMKSLLLLPEKNESSS  135 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCGGGGCCC-------HHHHHHHSCC-------
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCCCCCC--CCHHHHHhh-------ccHHHHHhhccccccCC
Confidence            999999999999999986 99999999999  999999998       67888999888877653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=6.6e-25  Score=180.35  Aligned_cols=136  Identities=25%  Similarity=0.275  Sum_probs=111.1

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhC-CCcccccccCCCCCCcHH
Q 042906          255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLVDRNGNTPL  333 (415)
Q Consensus       255 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~l  333 (415)
                      .+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. |++   ++.+|..|+|||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~tpL  144 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDTAL  144 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCCHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCCHH
Confidence            455788999999999999999999999988 588999999999999999999999999998 777   899999999999


Q ss_pred             HHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHHH
Q 042906          334 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEE  404 (415)
Q Consensus       334 ~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~~  404 (415)
                      |+|+..|+.+++++|+++ |++++.+|.+|  +|||++|+.       .+..++++.|+..||...+.+.+
T Consensus       145 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~~~~~~l~~l~~~~~~~~~~~~~  205 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAK-GARTDLRNIEK--KLAFDMATN-------AACASLLKKKQGTDAVRTLSNAE  205 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHH-TCCSCCCCTTS--CCHHHHCCS-------HHHHHHHC---------------
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCccccCCC--CCHHHHhcc-------hhHHHHHHHHhccchhhhccchh
Confidence            999999999999999986 99999999999  999999998       68889999999999998776543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=1.6e-24  Score=160.28  Aligned_cols=112  Identities=26%  Similarity=0.262  Sum_probs=103.1

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHH
Q 042906          256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHL  335 (415)
Q Consensus       256 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~  335 (415)
                      +..|.||||+|+..++.+++++|++.+++ ++.++..|+||||+|+..++.+++++|++.|++   ++.+|..|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHH
Confidence            45678999999999999999999999988 599999999999999999999999999999887   89999999999999


Q ss_pred             HHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          336 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       336 A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      |+..++.+++++|+++ |++++.+|.+|  +|||++|..
T Consensus        80 A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~  115 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSK-GADKTVKGPDG--LTAFEATDN  115 (123)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHCCC
T ss_pred             HHHcCCHHHHHHHHHc-CCCCCCcCCCC--CCHHHHhCC
Confidence            9999999999999986 99999999999  999999966

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=8.2e-25  Score=165.20  Aligned_cols=130  Identities=21%  Similarity=0.239  Sum_probs=114.4

Q ss_pred             cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhcccccc
Q 042906           25 NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQ  104 (415)
Q Consensus        25 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  104 (415)
                      .++ .++..|.||||+|+..|+.+++++|++.         +.+++.++..|+||||+|+..|+.+++++|+++|++++ 
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-   70 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQN---------GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-   70 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHT---------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-
Confidence            345 5778999999999999999999999997         56778899999999999999999999999999999876 


Q ss_pred             CCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhh
Q 042906          105 AGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK  178 (415)
Q Consensus       105 ~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  178 (415)
                                  .+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||+++|+..+..+++.++.+.
T Consensus        71 ------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           71 ------------TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             ------------CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             ------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence                        568889999999999999999999999999876 7899999999999988888888776644

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.9e-24  Score=184.78  Aligned_cols=137  Identities=21%  Similarity=0.232  Sum_probs=108.0

Q ss_pred             hHHHHHHHcCChhHHHHHHhhcccccc------CCCCCCCHHHHHHHh---CCHHHHHHHHhccchHHHHHHhHhhhcCC
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFST------SSPGGNTVLHMAVRF---RNQQVIREILRQQNFIALRLHYSLLRQKN   73 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   73 (415)
                      .+|+.|+..|+++.++.|++.|.+++.      .+..|.||||+|+..   |+.+++++|++.         +++++.+|
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~---------gadvn~~d  223 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN---------GGHLDAKA  223 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH---------SSCTTCCC
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc---------CCCCCCCC
Confidence            458888888888888888888888877      577888888888887   788888888887         56677788


Q ss_pred             CCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCccccc
Q 042906           74 LMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN  153 (415)
Q Consensus        74 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  153 (415)
                      ..|+||||+|+..|+.+++++|+++|++++             .+|..|.||||+|+..++.+++++|++.|++      
T Consensus       224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-------------~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------  284 (301)
T 2b0o_E          224 ADGNTALHYAALYNQPDCLKLLLKGRALVG-------------TVNEAGETALDIARKKHHKECEELLEQAQAG------  284 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------
Confidence            888888888888888888888888888776             5678888888888888888888888887754      


Q ss_pred             ccCCcHHHHHHHcCC
Q 042906          154 KAYQTPLSIAIDARL  168 (415)
Q Consensus       154 ~~~~~~l~~a~~~~~  168 (415)
                       .|.||||+|+..|+
T Consensus       285 -~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          285 -TFAFPLHVDYSWVI  298 (301)
T ss_dssp             -TTSSCCC-------
T ss_pred             -CCCChhHHHHhcCC
Confidence             46788888887664

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=8.3e-24  Score=175.92  Aligned_cols=142  Identities=24%  Similarity=0.265  Sum_probs=115.0

Q ss_pred             cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHH
Q 042906          223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVAA  301 (415)
Q Consensus       223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~  301 (415)
                      ..|.||||.|+..|+.+++++|++ +.+++ ..+..|.||||+|+..|+.+++++|+++|++ ++..+ ..|+||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence            346788888888888888888888 77666 5788888888888888888888888888888 47777 77888888888


Q ss_pred             hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHH
Q 042906          302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE  381 (415)
Q Consensus       302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~  381 (415)
                      ..|+.+++++|+++|++   ++.+|..|+||||+|+..++                  ...+  .|||++|++       
T Consensus       120 ~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~~------------------~~~~--~~~l~~a~~-------  169 (244)
T 3ui2_A          120 GYVRPEVVEALVELGAD---IEVEDERGLTALELAREILK------------------TTPK--GNPMQFGRR-------  169 (244)
T ss_dssp             HTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHHT------------------TCCC--SSHHHHHHH-------
T ss_pred             HcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHHh------------------ccCC--CCHHHHHHH-------
Confidence            88888888888888877   88888888888888875222                  1346  888888888       


Q ss_pred             HHHHHHHHHHHHHHHH
Q 042906          382 IQKHLTLKALKTAYAK  397 (415)
Q Consensus       382 ~~~~~~~~~L~~~Ga~  397 (415)
                      .++.+++++|++++.+
T Consensus       170 ~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          170 IGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHHHHHEE
T ss_pred             cChHHHHHHHHHhccc
Confidence            5888899999887654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=3e-24  Score=170.56  Aligned_cols=138  Identities=25%  Similarity=0.281  Sum_probs=95.0

Q ss_pred             cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHH
Q 042906          223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVAA  301 (415)
Q Consensus       223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~  301 (415)
                      ..|.||||.|+..|+.++++.|++ +.+++ ..+..|.||||+|+..++.+++++|+++|++ ++.++ ..|+||||+|+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence            345677777777777777777777 66555 4666777777777777777777777777776 46665 66777777777


Q ss_pred             hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHH
Q 042906          302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE  381 (415)
Q Consensus       302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~  381 (415)
                      ..++.+++++|+++|++   ++.+|..|+||||+|+..++.                  ..+  .+||++|++       
T Consensus       119 ~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~------------------~~~--~~~l~~a~~-------  168 (183)
T 3deo_A          119 GYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKT------------------TPK--GNPMQFGRR-------  168 (183)
T ss_dssp             HTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHHHT------------------CCC--CSHHHHHHH-------
T ss_pred             hcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHHhccC------------------ccc--ccHHHHHHH-------
Confidence            77777777777777666   667777777777777653322                  234  677777777       


Q ss_pred             HHHHHHHHHHHH
Q 042906          382 IQKHLTLKALKT  393 (415)
Q Consensus       382 ~~~~~~~~~L~~  393 (415)
                      .+..+++++|.+
T Consensus       169 ~~~~~i~~~L~~  180 (183)
T 3deo_A          169 IGLEKVINVLEG  180 (183)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHH
Confidence            567777777754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=3.1e-23  Score=164.70  Aligned_cols=137  Identities=19%  Similarity=0.142  Sum_probs=84.7

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906           33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE  112 (415)
Q Consensus        33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (415)
                      .|.||||+|+..|+.+++++|++ +         .+++.+|..|+||||+|+..|+.+++++|+++|++++         
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~---------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------  103 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-D---------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD---------  103 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-T---------SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-c---------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence            45666666666666666666666 2         2345566666666666666666666666666666554         


Q ss_pred             hhhhccc-CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906          113 SLFRMRD-IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE  191 (415)
Q Consensus       113 ~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  191 (415)
                          .++ ..|.||||+|+..++.+++++|++.|+++. ..+..|.||+++|+..++.+                   .+
T Consensus       104 ----~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~-------------------~~  159 (183)
T 3deo_A          104 ----HRDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKTT-------------------PK  159 (183)
T ss_dssp             ----CCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHTC-------------------CC
T ss_pred             ----cCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccCc-------------------cc
Confidence                233 556666666666666666666666666554 45666666666666544331                   22


Q ss_pred             hhHHHHHHHcCCHHHHHHHHh
Q 042906          192 LTLLHFVVMRQNYDIMVKILG  212 (415)
Q Consensus       192 ~~~l~~a~~~~~~~~~~~ll~  212 (415)
                      .+++++++..|..++++.|.+
T Consensus       160 ~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          160 GNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHcCHHHHHHHHHH
Confidence            356666666666666666654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=3.7e-24  Score=175.86  Aligned_cols=139  Identities=19%  Similarity=0.244  Sum_probs=115.7

Q ss_pred             cccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCccccccCCCCcHH
Q 042906          219 DRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK-YPDAIEIRDNSDRSIL  297 (415)
Q Consensus       219 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~l  297 (415)
                      +..+..|.||||+|+..|+.+++++|++.|.+++ ..+..|.||||+|+..++.+++++|++. +++ ++.+|..|+|||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL  144 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTAL  144 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHH
Confidence            3346678899999999999999999999999887 6889999999999999999999999999 777 699999999999


Q ss_pred             HHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccccc
Q 042906          298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA  363 (415)
Q Consensus       298 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g  363 (415)
                      |+|+..|+.+++++|+++|++   ++.+|..|+|||++|+..++.++++.|+.. |++.+.++.+|
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~  206 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAED  206 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhh
Confidence            999999999999999999988   899999999999999999999999999986 89998888776

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=179.55  Aligned_cols=138  Identities=17%  Similarity=0.236  Sum_probs=121.2

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHhchhhhhc-----cCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcH
Q 042906          225 QRNPLHYAAASGNVKMAQRLLEESKQLAYK-----RDCNGETPLHLAAEN---GKLKVLKLLINKYPDAIEIRDNSDRSI  296 (415)
Q Consensus       225 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~  296 (415)
                      ..++|+.|+..++.+.++.|++.|.+++..     .+..|.||||+|+..   ++.+++++|+++|++ ++.+|..|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence            346799999999999999999999887732     578899999999997   899999999999998 69999999999


Q ss_pred             HHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          297 LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       297 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      ||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..++.+++++|+++ |++      .|  .||||+|+++
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g--~tpLh~A~~~  296 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TF--AFPLHVDYSW  296 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TT--SSCCC-----
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CC--CChhHHHHhc
Confidence            9999999999999999999988   899999999999999999999999999986 765      67  9999999984

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=1.7e-23  Score=154.70  Aligned_cols=114  Identities=20%  Similarity=0.290  Sum_probs=103.0

Q ss_pred             ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906          222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA  301 (415)
Q Consensus       222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~  301 (415)
                      +..+.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence            3457799999999999999999999998877 6788999999999999999999999999999 6999999999999999


Q ss_pred             hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcC
Q 042906          302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL  340 (415)
Q Consensus       302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~  340 (415)
                      ..++.+++++|+++|++   ++.+|..|+||||+|...+
T Consensus        82 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCCHH
Confidence            99999999999999888   8999999999999994433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=5.4e-23  Score=171.00  Aligned_cols=138  Identities=19%  Similarity=0.141  Sum_probs=100.2

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906           33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE  112 (415)
Q Consensus        33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (415)
                      .|.||||+|+..|+.+++++|++ +         .+++.+|..|+||||+|+..|+.+++++|+++|++++         
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~---------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---------  104 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-D---------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD---------  104 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-T---------CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-C---------CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC---------
Confidence            46778888888888888877777 3         3456677777788888888888888888887777765         


Q ss_pred             hhhhccc-CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906          113 SLFRMRD-IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE  191 (415)
Q Consensus       113 ~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  191 (415)
                          .++ ..|.||||+|+..|+.+++++|++.|+++. ..+..|.||+|+|+..+..                   ..+
T Consensus       105 ----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~~-------------------~~~  160 (244)
T 3ui2_A          105 ----HRDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT-------------------TPK  160 (244)
T ss_dssp             ----CCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHTT-------------------CCC
T ss_pred             ----cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHhc-------------------cCC
Confidence                234 567788888888788888888887777765 5677777888777754333                   234


Q ss_pred             hhHHHHHHHcCCHHHHHHHHhc
Q 042906          192 LTLLHFVVMRQNYDIMVKILGT  213 (415)
Q Consensus       192 ~~~l~~a~~~~~~~~~~~ll~~  213 (415)
                      .++|++|+..|+.+++++|++.
T Consensus       161 ~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          161 GNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHHh
Confidence            5778888888877777777764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=4.1e-23  Score=174.61  Aligned_cols=123  Identities=20%  Similarity=0.265  Sum_probs=70.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCc-----cccccCCCCcHHHHHHhc---CCHHHHHHHhhCCCcccccccCCCCCCcHH
Q 042906          262 PLHLAAENGKLKVLKLLINKYPDA-----IEIRDNSDRSILHVAAKH---GNWNIVSFILKSPEMENLINLVDRNGNTPL  333 (415)
Q Consensus       262 ~L~~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~~g~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l  333 (415)
                      +|+.|+..++.+.++.+++.|++.     ++..+..|+||||+|+..   ++.+++++|+++|++   ++.+|..|+|||
T Consensus       133 ~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~---in~~d~~g~TpL  209 (278)
T 1dcq_A          133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCCCHH
T ss_pred             hhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC---ccccCCCCCCHH
Confidence            455555555555555555555442     122345556666666655   556666666666555   555666666666


Q ss_pred             HHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          334 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       334 ~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      |+|+..|+.+++++|+++ |++++.+|.+|  +||||+|++       .++.+++++|+++||+
T Consensus       210 h~A~~~g~~~~v~~Ll~~-gad~~~~d~~g--~tpL~~A~~-------~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRG-KASIEIANESG--ETPLDIAKR-------LKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCccCCC--CCHHHHHHH-------cCCHHHHHHHHHcCCC
Confidence            666666666666666653 56666666666  666666665       3455566666666654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=2.3e-22  Score=170.06  Aligned_cols=124  Identities=19%  Similarity=0.275  Sum_probs=107.4

Q ss_pred             CHHHHHHhcCCHHHHHHHHHhchhhhh-----ccCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHHH
Q 042906          227 NPLHYAAASGNVKMAQRLLEESKQLAY-----KRDCNGETPLHLAAEN---GKLKVLKLLINKYPDAIEIRDNSDRSILH  298 (415)
Q Consensus       227 t~l~~a~~~~~~~~~~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  298 (415)
                      ++|+.|+..++.+.++.+++.|.+...     ..+..|.||||+|+..   ++.+++++|+++|++ ++.+|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence            578888888888888888888877542     2367789999999998   889999999999998 5899999999999


Q ss_pred             HHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906          299 VAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (415)
Q Consensus       299 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~  355 (415)
                      +|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++ |++
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~  263 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQA-LSG  263 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTT
T ss_pred             HHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            99999999999999999887   889999999999999999999999999986 654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=5.3e-22  Score=138.54  Aligned_cols=93  Identities=34%  Similarity=0.509  Sum_probs=85.9

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906           33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE  112 (415)
Q Consensus        33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (415)
                      +|+||||+|+..|+.+++++|++.         +++++.+|..|+||||+|+..|+.+++++|+++|++++         
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------   62 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA---------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---------   62 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc---------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence            489999999999999999999997         57788999999999999999999999999999999877         


Q ss_pred             hhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 042906          113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV  147 (415)
Q Consensus       113 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  147 (415)
                          .+|..|.||||+|+..++.+++++|++.|++
T Consensus        63 ----~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           63 ----AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             ----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ----ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                5788999999999999999999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=6.8e-22  Score=172.60  Aligned_cols=146  Identities=20%  Similarity=0.232  Sum_probs=116.7

Q ss_pred             cCCCCHHHHHHhc-CCHHHHHHHHHhchhhhhccC--CCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 042906          223 WHQRNPLHYAAAS-GNVKMAQRLLEESKQLAYKRD--CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHV  299 (415)
Q Consensus       223 ~~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  299 (415)
                      ..+.|+||.|+.. ++.++++.|+++|++++ ..+  ..|.||||+|+..++.+++++|+++|++ ++..|..|+||||+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            3456899999999 99999999999999988 455  7899999999999999999999999999 69999999999999


Q ss_pred             HHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhcc--CcCccccccccccchhHHHHHHh
Q 042906          300 AAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK--SVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       300 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~--g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      |+..++.+++++|+++|++   ++.+|..|.||||+|+..++.+++++|+...  +++....+..+  .|+++++...
T Consensus       275 A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~--~t~l~i~~~~  347 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGD--ETYLDIFRDF  347 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCC--CCHHHHHHHH
Confidence            9999999999999999988   8999999999999999999999999999652  24455666778  9999998884

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.2e-21  Score=136.77  Aligned_cols=93  Identities=44%  Similarity=0.679  Sum_probs=82.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHH
Q 042906          258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA  337 (415)
Q Consensus       258 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~  337 (415)
                      +|.||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++|++   ++.+|..|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHH
Confidence            478999999999999999999999988 588999999999999999999999999999887   8889999999999999


Q ss_pred             hcCChHHHHHHhhccCcC
Q 042906          338 MGLHSDVVFTLSRHKSVN  355 (415)
Q Consensus       338 ~~~~~~~~~~Ll~~~g~~  355 (415)
                      ..|+.+++++|+++ |++
T Consensus        77 ~~~~~~~~~~Ll~~-ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEA-GAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHT-TCC
T ss_pred             HcCCHHHHHHHHHc-CCC
Confidence            99999999999976 764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=4.4e-22  Score=145.18  Aligned_cols=109  Identities=32%  Similarity=0.468  Sum_probs=100.7

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHH
Q 042906          254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPL  333 (415)
Q Consensus       254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l  333 (415)
                      .+|..|.||||+|+..++.+++++|++++++ ++..|..|.||||+|+..++.+++++|++.|++   ++.+|..|+|||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tpl   79 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPE   79 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHH
Confidence            3678899999999999999999999999998 699999999999999999999999999999887   899999999999


Q ss_pred             HHHHhcCChHHHHHHhhccCcCccccccccccchhH
Q 042906          334 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIAL  369 (415)
Q Consensus       334 ~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l  369 (415)
                      |+|+..++.+++++|+++ |++++.++..|  .||-
T Consensus        80 ~~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~--~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAK-GADVNARSWGS--SHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTT-SSSHHHHSCCC--C---
T ss_pred             HHHHHCCCHHHHHHHHHc-CCCCCcCCccc--cccc
Confidence            999999999999999986 99999999999  8874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=6.9e-22  Score=172.55  Aligned_cols=128  Identities=17%  Similarity=0.201  Sum_probs=118.9

Q ss_pred             CCCCCCHHHHHHHc-CCHHHHHHHHHhCCCcccccc--CCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcH
Q 042906          256 DCNGETPLHLAAEN-GKLKVLKLLINKYPDAIEIRD--NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTP  332 (415)
Q Consensus       256 ~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~--~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~  332 (415)
                      ...+.|+||.|+.. ++.+++++|+++|++ ++..+  ..|.||||+|+..++.+++++|+++|++   ++.+|..|+||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad---vn~~d~~G~Tp  271 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN---VNQADSAGRGP  271 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCCCCCCCCH
Confidence            34566899999999 999999999999999 58888  8999999999999999999999999988   99999999999


Q ss_pred             HHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          333 LHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       333 l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      ||+|+..|+.+++++|+++ |++++.+|.+|  .||||+|+.       .++.+++++|+..|+.
T Consensus       272 Lh~A~~~g~~~~v~~LL~~-Gad~~~~d~~G--~TpL~~A~~-------~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKR-GADLGARDSEG--RDPLTIAME-------TANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHHHC-
T ss_pred             HHHHHHcCcHHHHHHHHHC-cCCCCCcCCCC--CCHHHHHHH-------CCCHHHHHHHHHcCCC
Confidence            9999999999999999986 99999999999  999999999       5788999999999855

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=2.2e-20  Score=136.15  Aligned_cols=109  Identities=29%  Similarity=0.442  Sum_probs=100.0

Q ss_pred             ccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 042906          220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHV  299 (415)
Q Consensus       220 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  299 (415)
                      ..|..|.||||+|+..++.+++++|++++.+++ ..+..|.||||+|+..++.+++++|++++++ ++.+|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence            457789999999999999999999999999877 5789999999999999999999999999999 69999999999999


Q ss_pred             HHhcCCHHHHHHHhhCCCcccccccCCCCCCcHH
Q 042906          300 AAKHGNWNIVSFILKSPEMENLINLVDRNGNTPL  333 (415)
Q Consensus       300 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l  333 (415)
                      |+..++.+++++|+++|++   ++.++..|.+|-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGAD---VNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSS---HHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCC---CCcCCccccccc
Confidence            9999999999999999988   899999999873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=2.8e-18  Score=123.46  Aligned_cols=90  Identities=21%  Similarity=0.333  Sum_probs=72.2

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHH
Q 042906          255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLH  334 (415)
Q Consensus       255 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~  334 (415)
                      .+.+|.||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++|++   ++.+|..|+||||
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~   95 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFD   95 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCCcHHH
Confidence            566777888888888888888888888877 577888888888888888888888888888776   7788888888888


Q ss_pred             HHHhcCChHHHHHH
Q 042906          335 LAAMGLHSDVVFTL  348 (415)
Q Consensus       335 ~A~~~~~~~~~~~L  348 (415)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            88888888888776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=1.7e-18  Score=124.64  Aligned_cols=93  Identities=25%  Similarity=0.238  Sum_probs=83.7

Q ss_pred             cccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccccccc
Q 042906          286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARN  365 (415)
Q Consensus       286 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~  365 (415)
                      ....+.+|.|+||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|  
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g--   90 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFG--   90 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCC--
Confidence            355678899999999999999999999999887   899999999999999999999999999987 99999999999  


Q ss_pred             chhHHHHHHhhhhhHHHHHHHHHHHH
Q 042906          366 NIALEIAEITRADGKEIQKHLTLKAL  391 (415)
Q Consensus       366 ~t~l~~a~~~~~~~~~~~~~~~~~~L  391 (415)
                      +||||+|+.       .++.+++++|
T Consensus        91 ~tpl~~A~~-------~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISID-------NGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHH-------HTCHHHHHHH
T ss_pred             CcHHHHHHH-------cCCHHHHHHh
Confidence            999999999       5778888887

>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X

Probab=84.08  E-value=7.6  Score=33.30  Aligned_cols=126  Identities=10%  Similarity=0.057  Sum_probs=64.4

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhcc-ccccCCCcchhh
Q 042906           34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVP-AVNQAGPLPVLE  112 (415)
Q Consensus        34 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~  112 (415)
                      |.-.|......++.+-.+.+++.-      ......-..|..|+..+.-....++.+....+++.-. .+.         
T Consensus        37 gsR~lQ~~l~~~~~~~~~~i~~ei------~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~---------  101 (351)
T 3gvo_A           37 GSRFIQQKLERATPAERQIVFNEI------LQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVL---------  101 (351)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHH------GGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHH---------
T ss_pred             chHHHHHHHhhCCHHHHHHHHHHH------HHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHH---------
Confidence            333444444455544444444431      1122334577788888887888887776666665321 111         


Q ss_pred             hhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCC-C-CcccccccCCcHHHHHHHcCChhHHHHHh
Q 042906          113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS-V-PSSYINKAYQTPLSIAIDARLNDSACFII  176 (415)
Q Consensus       113 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~-~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll  176 (415)
                        --..+.+|...+..+......+-...+++.-. . .....+..|...+..+......+....++
T Consensus       102 --~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~  165 (351)
T 3gvo_A          102 --PLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII  165 (351)
T ss_dssp             --HHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHH
T ss_pred             --HHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHH
Confidence              11356777777777777766655454543211 1 11123445555555555544444444444

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=80.19  E-value=0.84  Score=23.82  Aligned_cols=21  Identities=14%  Similarity=0.279  Sum_probs=13.7

Q ss_pred             ChHHHHHHHcCChhHHHHHHh
Q 042906            2 DQELLEVLRNGDENKIKQLAL   22 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~   22 (415)
                      +.+++.|+..||.+.++.|-.
T Consensus        14 EQqiyvA~seGd~etv~~Le~   34 (40)
T 1gp8_A           14 RKQMDAAASKGDVETYRKLKA   34 (40)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHH
Confidence            456667777777777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-21
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-19
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-17
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-17
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	9e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-28
 Identities = 92/383 (24%), Positives = 155/383 (40%), Gaps = 41/383 (10%)

Query: 10  RNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL 69
             G    +K L  R    + S+    T LHMA R  + +V + +L+         + + +
Sbjct: 9   FMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ---------NKAKV 59

Query: 70  RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPV------------------- 110
             K   D+TPLH AARIG+  +V  +++     N A                        
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 111 -LESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN 169
             E+       +G TPLH A      RV  +L+E+D+ P++   K   TPL +A+     
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNL 178

Query: 170 DSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPL 229
           D    ++ +       +   +  T LH    +   ++   +L       +        PL
Sbjct: 179 DIVKLLLPRGGSP--HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPL 235

Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AA  G+ +M   LL +        + +G TPLHL A+ G + V  +LI      ++  
Sbjct: 236 HLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDAT 293

Query: 290 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
                + LHVA+ +GN  +V F+    + +  +N   + G +PLH AA   H+D+V  L 
Sbjct: 294 TRMGYTPLHVASHYGNIKLVKFL---LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

Query: 350 RHKSVNIRAKNRSARNNIALEIA 372
           ++   +    +        L IA
Sbjct: 351 KNG-ASPNEVSSDGTT--PLAIA 370

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 1e-27
 Identities = 70/284 (24%), Positives = 120/284 (42%), Gaps = 23/284 (8%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
           TPLH+A+ +G+  IV  +++   + N             + +++  TPLH A    H  V
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPN-------------VSNVKVETPLHMAARAGHTEV 48

Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHF 197
            + L++  +  ++   K  QTPL  A      +    +++ +    N             
Sbjct: 49  AKYLLQNKAKVNA-KAKDDQTPLHCAARIGHTNMVKLLLENNA---NPNLATTAGHTPLH 104

Query: 198 VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDC 257
           +  R+ +   V  L   +     +      PLH AA  G V++A+ LLE           
Sbjct: 105 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGK 163

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
           NG TPLH+A  +  L ++KLL+ +          +  + LH+AAK     +   +L   +
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLL---Q 219

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 360
                N     G TPLHLAA   H+++V   LS+  + N+  K+
Sbjct: 220 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 263

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 2e-24
 Identities = 59/298 (19%), Positives = 112/298 (37%), Gaps = 28/298 (9%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G T LH+A ++   +V   +L            +          TPLH+A    N  IV 
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLE---------RDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            ++    + +                  G TPLH A       V R L++     ++  +
Sbjct: 183 LLLPRGGSPHS-------------PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-S 228

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGT 213
               TPL +A  A+   +    +  S ++         LT LH V    +  +   +L  
Sbjct: 229 VQGVTPLHLA--AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA-DVLIK 285

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK 273
           +  ++D        PLH A+  GN+K+ + LL+        +   G +PLH AA+ G   
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTD 344

Query: 274 VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNT 331
           ++ LL+           +   + L +A + G  ++   +    +  + + + D++  +
Sbjct: 345 IVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 2e-19
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 38/202 (18%)

Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL 251
           LT LH      +  I VK L       +  +     PLH AA +G+ ++A+ LL+   ++
Sbjct: 1   LTPLHVASFMGHLPI-VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPD--------------------------- 284
              +  + +TPLH AA  G   ++KLL+    +                           
Sbjct: 60  N-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 285 -----AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMG 339
                +         + LHVAAK+G   +   +L   E +   N   +NG TPLH+A   
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLHVAVHH 175

Query: 340 LHSDVVFTLSRHK-SVNIRAKN 360
            + D+V  L     S +  A N
Sbjct: 176 NNLDIVKLLLPRGGSPHSPAWN 197

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 2e-17
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 33/174 (18%)

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
           PLH A+  G++ + + LL+         +   ETPLH+AA  G  +V K L+      + 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VN 60

Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKS------------------------------PE 317
            +   D++ LH AA+ G+ N+V  +L++                               E
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKNRSARNNIALE 370
            E     + + G TPLH+AA      V    L R    N   KN     ++A+ 
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH 174

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 23/160 (14%)

Query: 5   LLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRL 64
           L    + G    +  L  +Q   +  +  G T LH+  +  +  V   +++         
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK--------- 285

Query: 65  HYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNT 124
           H  ++     M  TPLH+A+  GN  +V  ++++   VN              +   G +
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN-------------AKTKLGYS 332

Query: 125 PLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI 164
           PLH A    H  ++ +L++  + P+  ++    TPL+IA 
Sbjct: 333 PLHQAAQQGHTDIVTLLLKNGASPNE-VSSDGTTPLAIAK 371

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 5   LLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRL 64
           L      G+   +K L   Q   +  +  G + LH A +  +  ++  +L+         
Sbjct: 301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK--------- 351

Query: 65  HYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRM 117
           + +   + +    TPL IA R+G       +   +  V       ++    RM
Sbjct: 352 NGASPNEVSSDGTTPLAIAKRLGYI----SVTDVLKVVTDETSFVLVSDKHRM 400

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (243), Expect = 7e-24
 Identities = 54/263 (20%), Positives = 101/263 (38%), Gaps = 15/263 (5%)

Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKS 179
           +E N  L  AV N+   +++ L+E  +  +    +   TPL  A+     D    ++   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 180 PESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK 239
            + +   +          +        ++K+  +    ++  D++       AA  G VK
Sbjct: 63  ADPVLRKKNGAT---PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 240 MAQRLLEESKQLAYKRDC---------NGETPLHLAAENGKLKVLKLLINKYPDAIEIRD 290
             + L +    +  +R            G T L  AAE G ++VLK+L+++    +   D
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 291 NSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
           N  R+ L  A    + + V  I     +    +N+    G TPL LA    H  +V  L 
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

Query: 350 RHKSVNIRAKNRSARNNIALEIA 372
             + + I   +   +   AL +A
Sbjct: 240 EQEHIEINDTDSDGKT--ALLLA 260

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 3e-20
 Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 19/285 (6%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
            N +L  AV+  +  +++++L            ++  Q+     TPLH A ++    IV 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEG--------GANVNFQEEEGGWTPLHNAVQMSREDIVE 56

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            ++++                     +         +          + E D    +   
Sbjct: 57  LLLRHGADPVLRKKN------GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM 110

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL-- 211
           +A       A+       A   + +  +           T L     + + ++ +KIL  
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV-LKILLD 169

Query: 212 --GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN 269
             G +    D +  +       ++   +V+    LL +       R   G+TPL LA E 
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
             L +++ L+ +    I   D+  ++ L +A +     I   + K
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 7e-15
 Identities = 37/199 (18%), Positives = 68/199 (34%), Gaps = 39/199 (19%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN------ 280
           + L  A  + +V + Q+LLE    + ++ +  G TPLH A +  +  +++LL+       
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 281 --------------------------KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
                                          +   D    +    AA +G    + F+ K
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 315 SPEMENL-------INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNI 367
                NL          + + G T L  AA   H +V+  L      ++ A +   RN +
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 368 ALEIAEITRADGKEIQKHL 386
              +     +D + I   L
Sbjct: 187 IHALLSSDDSDVEAITHLL 205

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 90.6 bits (223), Expect = 4e-21
 Identities = 47/294 (15%), Positives = 98/294 (33%), Gaps = 35/294 (11%)

Query: 77  ETPLHIA-ARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHK 135
           E+P+ +     G+ AI   I +   +VN             +      T LH   +N   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRE--SVNI------------IDPRHNRTVLHWIASNSSA 46

Query: 136 RVIRILVEKDSVPS-------SYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRL 188
                L+  ++          + ++    TPL +A+ AR      +++    +     + 
Sbjct: 47  EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS 106

Query: 189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES 248
                            + +      K  I+ LD +    L   A +             
Sbjct: 107 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 166

Query: 249 KQLAY----------KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILH 298
           ++ A                G T LH AA+   + ++K L+ +     + +D   ++ + 
Sbjct: 167 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 226

Query: 299 VAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK 352
           +AA+ G   +V +++   +    +  VD   +T   LA    H ++V    R +
Sbjct: 227 LAAQEGRIEVVMYLI---QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 85.2 bits (209), Expect = 2e-19
 Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 25/289 (8%)

Query: 36  TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEI 95
           + + +         I E + +++   +   +         + T LH  A   +     ++
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRH---------NRTVLHWIASNSSAEKSEDL 52

Query: 96  VKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA 155
           + +      A    V        D + NTPL  AV  + +R++  L++  + P+ Y    
Sbjct: 53  IVHEAKECIAAGADV-----NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE 107

Query: 156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMV------- 208
                  A +         +     +        + +T L  V   +  D +        
Sbjct: 108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE 167

Query: 209 ---KILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHL 265
              K+        D   +  R  LHYAA   N+ + + L+ E      K+D +G+TP+ L
Sbjct: 168 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 227

Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           AA+ G+++V+  LI +    +E  D +D +   +A  + + NIV    +
Sbjct: 228 AAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.8 bits (182), Expect = 9e-16
 Identities = 38/268 (14%), Positives = 87/268 (32%), Gaps = 4/268 (1%)

Query: 12  GDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ 71
                I +   R+++         TVLH      + +   +++  +    +      +  
Sbjct: 11  AGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNA 69

Query: 72  KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVT 131
            +  + TPL +A     R +V+ ++K                     +   +  +   + 
Sbjct: 70  MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN--RDFGMMVYML 127

Query: 132 NQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191
           N  K    I     +  ++ +  A+         A+L       +D    +   +     
Sbjct: 128 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG 187

Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL 251
            T LH+     N  I+  ++G      D+ D   + P+  AA  G +++   L+++   +
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLI 279
               D    T   LA  N    ++ +  
Sbjct: 248 -EAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G T + +A +    +V+  +++           + +   +  D T   +A    +  IV 
Sbjct: 221 GKTPIMLAAQEGRIEVVMYLIQ---------QGASVEAVDATDHTARQLAQANNHHNIVD 271

Query: 94  EIVKY 98
              + 
Sbjct: 272 IFDRC 276

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 90.7 bits (224), Expect = 7e-21
 Identities = 42/361 (11%), Positives = 93/361 (25%), Gaps = 35/361 (9%)

Query: 1   MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
            D +L  +     EN  +       +   +      +       +N + +R++L      
Sbjct: 12  NDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAH 71

Query: 61  ALRLHYSL---LRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRM 117
             R    L     +K +  E    +AA  G     S  +  +  +  +        + ++
Sbjct: 72  YNRNAKQLWSDAHKKGIKSEVICFVAAITGC----SSALDTLCLLLTSD------EIVKV 121

Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEK-DSVPSSYINKAYQTPLSIAIDARLNDSACFII 176
              E       A  N H  V+  L E   +   + I         +A +         + 
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

Query: 177 DKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
           + +P         +      +  + + +  ++  L                   +    G
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-------PVMLAYAEIHEFEYG 234

Query: 237 NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSI 296
              +   +          R         L+  +G   ++                     
Sbjct: 235 EKYVNPFIARH-----VNRLKEMHDAFKLSNPDGVFDLVTKSECLQ-------GFYMLRN 282

Query: 297 LHVAAKHGNWNIVSFILKSPEMENL--INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354
           L         + + F+L  P ++ L     +  + N  L LA    +      L    SV
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 342

Query: 355 N 355
            
Sbjct: 343 L 343

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 67.6 bits (164), Expect = 4e-13
 Identities = 31/312 (9%), Positives = 69/312 (22%), Gaps = 34/312 (10%)

Query: 69  LRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHN 128
           L   +  +   + +        +   +  Y    N+      L S    + I+       
Sbjct: 39  LMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRN--AKQLWSDAHKKGIKSEVICFV 96

Query: 129 AVTNQHKRVIRI---LVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNT 185
           A        +     L+  D +    I         +A +         + + +P  +  
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 155

Query: 186 TRLPDELTLLHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
               +            +   ++  L      +        +       A   G+  +  
Sbjct: 156 MIQAENYHAFRLAAENGHLH-VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

Query: 243 RLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK 302
            LL+                     E G+  V   +          R         ++  
Sbjct: 215 FLLD--------CPVMLAYAEIHEFEYGEKYVNPFIARHVN-----RLKEMHDAFKLSNP 261

Query: 303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-- 360
            G +++V              L        L      +  D +  L     +   A    
Sbjct: 262 DGVFDLV---------TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 361 RSARNNIALEIA 372
                N  L +A
Sbjct: 313 IPGDANELLRLA 324

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.5 bits (161), Expect = 1e-12
 Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 17/195 (8%)

Query: 205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL----------LEESKQLAYK 254
           ++    +  N+  +  L + +   +         ++ Q L           ++    A+K
Sbjct: 26  NLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHK 85

Query: 255 RDCNGETPLHLAAENG---KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF 311
           +    E    +AA  G    L  L LL+      +++    +     +AA++G+ ++++ 
Sbjct: 86  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNR 144

Query: 312 ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
           + +    E +   +         LAA   H  V+  L         A  ++         
Sbjct: 145 LCELAPTEIMAM-IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 203

Query: 372 AEITRADGKEIQKHL 386
                     +   L
Sbjct: 204 --AVGRGHHNVINFL 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.4 bits (148), Expect = 4e-11
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 24/206 (11%)

Query: 193 TLLHFVVMRQNYDI--MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE-SK 249
            +     +         + +L T+ E++  +          AA +G++ +  RL E    
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE--IRDNSDRSILHVAAKHGNWN 307
           ++             LAAENG L VL  L    P      I+  +  +    A   G+ N
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 308 IVSFILKSPEMEN-----------------LINLVDRN--GNTPLHLAAMGLHSDVVFTL 348
           +++F+L  P M                   +   V+R    +    L+      D+V   
Sbjct: 212 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS 271

Query: 349 SRHKSVNIRAKNRSARNNIALEIAEI 374
              +   +        + + L+    
Sbjct: 272 ECLQGFYMLRNLIRRNDEVLLDDIRF 297

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.5 bits (207), Expect = 2e-19
 Identities = 46/238 (19%), Positives = 75/238 (31%), Gaps = 16/238 (6%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
            PLH A        V E++   P++               +D +G  PLH +V+ Q   +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQ------------KDQDGRIPLHWSVSFQAHEI 49

Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHF 197
              L+ K    +              I   + +                       +   
Sbjct: 50  TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 109

Query: 198 VVMRQNYDI-MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD 256
            +        + + L  N   +   D   + PLH AA+ G++K+ + L    K     +D
Sbjct: 110 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 169

Query: 257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
             G TPL  A   G      LL+ KY    ++ DN       VA       +  F L 
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (188), Expect = 6e-17
 Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 6/224 (2%)

Query: 123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPES 182
           N PLH A        ++ L+          ++  + PL  ++  + ++   F++ K    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 183 LNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA- 241
                  D       +        +VK L       D      +       A G      
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 242 QRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA 301
            + L E+      +D   + PLH AA  G LK+++LL      A+  +D    + L  A 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
             G+ +    +++    E   +LVD  G     +A    +  V 
Sbjct: 181 AEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDVAL---NEQVK 219

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 3e-15
 Identities = 42/251 (16%), Positives = 71/251 (28%), Gaps = 22/251 (8%)

Query: 35  NTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSE 94
           N  LH A        ++E+L            SLL QK+     PLH +       I S 
Sbjct: 1   NYPLHQACMENEFFKVQELLHS--------KPSLLLQKDQDGRIPLHWSVSFQAHEITSF 52

Query: 95  IVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINK 154
           ++  +  VN                                    +    +   +     
Sbjct: 53  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 112

Query: 155 AYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTN 214
             +    ++     N ++  I D                 LH      +  ++  + G  
Sbjct: 113 VGKKWFEVSQFLIENGASVRIKD-----------KFNQIPLHRAASVGSLKLIELLCGLG 161

Query: 215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKV 274
           K  ++  D     PL +A A G+   A  L+E+        D  G     +A      +V
Sbjct: 162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QV 218

Query: 275 LKLLINKYPDA 285
            K  +N   DA
Sbjct: 219 KKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 297 LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           LH A     +  V  +L S    +L+   D++G  PLH +      ++   L   
Sbjct: 4   LHQACMENEFFKVQELLHSKP--SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (207), Expect = 2e-19
 Identities = 47/233 (20%), Positives = 81/233 (34%), Gaps = 10/233 (4%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
           +TPLHIA   GN   V  +V       Q G          + +    TPLH AV      
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQ---QGGREL------DIYNNLRQTPLHLAVITTLPS 54

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
           V+R+LV   + P +                        +   +P +L+      +     
Sbjct: 55  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 114

Query: 197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD 256
            V +       V++L      ID +D          A   N     +LL +       + 
Sbjct: 115 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 174

Query: 257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
            +G + LH A+  G L +++ L+    D   +++  + + L VA      +I+
Sbjct: 175 YSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 4e-12
 Identities = 39/243 (16%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           G+T LH+AV   N   +  ++        +     L   N + +TPLH+A      ++V 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNL-----FQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 57

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            +V    +                             +    R +       ++     N
Sbjct: 58  LLVTAGASPMA----------LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 107

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGT 213
               T L +A++    ++   ++++  +            L+H V    N   MV++L  
Sbjct: 108 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV--ENNSLSMVQLLLQ 165

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK 273
           +   ++   +   + LH A+  G + + + L+         ++C+ +TPL +A     + 
Sbjct: 166 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVID 224

Query: 274 VLK 276
           +L+
Sbjct: 225 ILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDA---IEIRDNSDRSILHVAAKHGNWNIVSFILK 314
           +G+TPLH+A   G L  +  L+N +      ++I +N  ++ LH+A      ++V  ++ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 315 SPEMEN 320
           +     
Sbjct: 62  AGASPM 67

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 1e-18
 Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 9/223 (4%)

Query: 123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPES 182
           N  + N   +     ++  +  D   ++  ++  +T L  A       +           
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWA--CSAGHTEIVEFLLQLGV 61

Query: 183 LNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
               +     + LH        +I+  +LG   + ++ ++ +   PLHYAA+    ++A 
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 243 RLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK 302
            LLE        +D    T +H AA  G LK++ +L+        I+D    + LH+A  
Sbjct: 121 MLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACD 178

Query: 303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
                    ++        I + ++   TPL +A  G    ++
Sbjct: 179 EERVEEAKLLV---SQGASIYIENKEEKTPLQVAKGG-LGLIL 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 1e-12
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 5/137 (3%)

Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           +   A SG ++  +  +   K LA + D +  T LH A   G    +   + +    +  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH-TEIVEFLLQLGVPVND 65

Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
           +D++  S LH+AA  G   IV  +L        +N V++NG TPLH AA     ++   L
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQ---VNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 349 SRHKSVNIRAKNRSARN 365
                 N  AK+     
Sbjct: 123 LEGG-ANPDAKDHYEAT 138

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 1e-11
 Identities = 48/245 (19%), Positives = 93/245 (37%), Gaps = 27/245 (11%)

Query: 35  NTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSE 94
           N ++         + ++E +            SL  + +    T LH A   G+  IV  
Sbjct: 4   NLMVCNLAYSGKLEELKESILA--------DKSLATRTDQDSRTALHWACSAGHTEIVEF 55

Query: 95  IVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINK 154
           +++                    +D  G +PLH A +     +++ L+ K +  ++ +N+
Sbjct: 56  LLQLGVP-------------VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQ 101

Query: 155 AYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTN 214
              TPL  A     ++ A  +++         +   E T +H    +     M+ IL   
Sbjct: 102 NGCTPLHYAASKNRHEIAVMLLEGGANP--DAKDHYEATAMHRAAAK-GNLKMIHILLYY 158

Query: 215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKV 274
           K   +  D     PLH A     V+ A+ L+ +   + Y  +   +TPL +A   G   +
Sbjct: 159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVAK-GGLGLI 216

Query: 275 LKLLI 279
           LK ++
Sbjct: 217 LKRMV 221

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 5e-17
 Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 13/220 (5%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
           ++ LH+A     +A+  E+++          +    +    ++    TPLH AV      
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQ---------VKGDLAFLNFQNNLQQTPLHLAVITNQPE 53

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFI---IDKSPESLNTTRLPDELT 193
           +   L+     P     +             L                S+      +  T
Sbjct: 54  IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 113

Query: 194 LLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAY 253
            LH   +     I+  ++    ++  +   + R  LH A    N  +   LL+       
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VN 172

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD 293
           +    G +P  L       ++ + L     + +++   S+
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 1e-13
 Identities = 39/218 (17%), Positives = 79/218 (36%), Gaps = 8/218 (3%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN---KAYQTPLSIAIDARLNDSACFIID 177
           +G++ LH A+ ++ K +   ++ +     +++N      QTPL +A+     + A  ++ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRN---PLHYAAA 234
              +        +    L           ++    T   L   L     N    LH A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 235 SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDR 294
            G + + + L+     +  +  CNG T LHLA +     ++ LL+    D +        
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGY 179

Query: 295 SILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTP 332
           S   +     +  I   + +   +ENL  L +      
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEES 216

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.9 bits (193), Expect = 5e-17
 Identities = 44/253 (17%), Positives = 81/253 (32%), Gaps = 18/253 (7%)

Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESL 183
             L   +  + + +   L    S  +S    + Q    ++ D+ L +      +     L
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-L 99

Query: 184 NTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
           N        T LH++    N ++ VK L  +       D    + L  A  S N   +  
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLEL-VKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 244 LLEESKQLAY---KRDCNGETPLHLAAENGKLK------------VLKLLINKYPDAIEI 288
                  L       D    T LH       +             ++  ++ K    I+ 
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 218

Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FT 347
             N   S  +        +I+  +     + N++N  D NG+T L++AA   +  +V   
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 348 LSRHKSVNIRAKN 360
           L       I  K+
Sbjct: 279 LDYGADPFIANKS 291

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.2 bits (186), Expect = 4e-16
 Identities = 35/233 (15%), Positives = 78/233 (33%), Gaps = 50/233 (21%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
           D  GNTPLH   +  +  +++ LV+  S      +   ++ L  A               
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKA--------------- 147

Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV 238
                               V   +      +L      +   D   R  LH+   +  +
Sbjct: 148 -----------------VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 190

Query: 239 K------------MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY--PD 284
                        +   ++++  +         E+  +      K  +L+ L  K+   +
Sbjct: 191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250

Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
            +  +D++  + L++AA+ GN +IV  +L   +      + +++G  P+   A
Sbjct: 251 MLNAQDSNGDTCLNIAARLGNISIVDALL---DYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 4e-11
 Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 3/198 (1%)

Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK-QLAYKRDCNGETPLHL 265
           M   L  +    +           + +    ++        ++  L    D +G TPLH 
Sbjct: 54  MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 113

Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVA-AKHGNWNIVSFILKSPEMENLINL 324
                 L+++K L+    +     DN   S L  A     N++  +F      +   + L
Sbjct: 114 LTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 172

Query: 325 VDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQK 384
            D    T LH   +          +++    +       +N           +   +   
Sbjct: 173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 232

Query: 385 HLTLKALKTAYAKRALSA 402
                 L+    K  ++ 
Sbjct: 233 ERKDSILENLDLKWIIAN 250

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 44/236 (18%)

Query: 34  GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
           GNT LH      N ++++ +++         H S     + M E+ L  A +  N     
Sbjct: 107 GNTPLHWLTSIANLELVKHLVK---------HGSNRLYGDNMGESCLVKAVKSVNNYDSG 157

Query: 94  EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
                         L  L     + D    T LH+ +            +          
Sbjct: 158 TFEAL---------LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY-------- 200

Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL-- 211
                           D     I K       +   ++ +  +     +   I+  +   
Sbjct: 201 ---------------LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 245

Query: 212 GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267
                +++  D +    L+ AA  GN+ +   LL+      +  + +G  P+   A
Sbjct: 246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 16/118 (13%), Positives = 40/118 (33%), Gaps = 19/118 (16%)

Query: 13  DENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQK 72
           D      +  +     + +    +  +     R   ++  +  +       +  ++L  +
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK------WIIANMLNAQ 255

Query: 73  NLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAV 130
           +   +T L+IAAR+GN +IV  ++ Y                  + +  G  P+    
Sbjct: 256 DSNGDTCLNIAARLGNISIVDALLDYGADPF-------------IANKSGLRPVDFGA 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.9 bits (185), Expect = 3e-16
 Identities = 43/253 (16%), Positives = 82/253 (32%), Gaps = 21/253 (8%)

Query: 114 LFRMRDIEGNTPLHNAVTNQHKRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDS 171
           +F     +G+T LH AV +QH+  +  L+            N   QT L +A    +   
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA---ILGE 57

Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL----------GTNKELIDRL 221
           A  +                      +  R        +L           ++  L    
Sbjct: 58  ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 222 DWHQRN---PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLL 278
           D        P    +        +   E+ +      + +G TPLH+A  +   ++++LL
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 279 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
            +   D  +      R+ LH+A +    +++  +L   +           G TPL  A +
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL---KAGADPTARMYGGRTPLGSALL 234

Query: 339 GLHSDVVFTLSRH 351
             +  +   L  H
Sbjct: 235 RPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 1e-15
 Identities = 53/276 (19%), Positives = 96/276 (34%), Gaps = 33/276 (11%)

Query: 26  IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR 85
           +F   +  G+T LH+AV  +++  +  +L           +  L  +N + +T LH+AA 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGF------SAGHEYLDLQNDLGQTALHLAAI 54

Query: 86  IGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145
           +G  + V ++                     + +  G+T LH A   +      +L++  
Sbjct: 55  LGEASTVEKLYAAGAG-------------VLVAERGGHTALHLACRVRAHTCACVLLQPR 101

Query: 146 SVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRL-----------PDELTL 194
                  +  Y T          +  A      +PE+    R             D  T 
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

Query: 195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYK 254
           LH  V+ ++ +++  +     +L        R PLH A  +    + + LL+        
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TA 220

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD 290
           R   G TPL  A       + +LL      A E  D
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAH--GAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 9e-11
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINK--YPDAIEIRDNSDRSILHVAAKHGNWNIVSF 311
               +G+T LHLA  +     L  L+      + ++++++  ++ LH+AA  G  + V  
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 312 ILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIA 368
           +         + + +R G+T LHLA           L + +  + R  + +      
Sbjct: 64  L---YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIA 372
           +   V  +G+T LHLA +  H   +  L    + +     ++     AL +A
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.4 bits (181), Expect = 1e-15
 Identities = 53/300 (17%), Positives = 102/300 (34%), Gaps = 29/300 (9%)

Query: 38  LHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVK 97
           +  A + RN+Q+ R I  + +     +     + K   D      A   G+   V  +++
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLE 61

Query: 98  YVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157
               +N               +++G T LH A  + +  +++ LVE              
Sbjct: 62  RGADINY-------------ANVDGLTALHQACIDDNVDMVKFLVENG-----ANINQPD 103

Query: 158 TPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKEL 217
               I + A  +     I +            +        +  +     +     N++ 
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKL 277
           +D     +            ++ A++ L        +   +G T LH+AA  G  +VLKL
Sbjct: 164 VDIEAARKEEERIM------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 278 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
           LI    D + I+D    + LH AA  G       ++   E    +  V++ G T   +A 
Sbjct: 218 LIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILV---ENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 52/323 (16%), Positives = 109/323 (33%), Gaps = 40/323 (12%)

Query: 1   MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
              E L+     + +    +  R+   +        V   A    + + +  +L      
Sbjct: 9   KRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDGAVFLAACSSGDTEEVLRLLE----- 61

Query: 61  ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
                 + +   N+   T LH A    N  +V  +V+                     D 
Sbjct: 62  ----RGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-------------INQPDN 104

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP 180
           EG  PLH A +  +  +   L+ + +   +  ++          +A        +     
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV----- 159

Query: 181 ESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKM 240
                 R   ++        R       + L +      R        LH AAA G  ++
Sbjct: 160 -----NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214

Query: 241 AQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVA 300
            + L++    +   +D +G TPLH AA  GK +  ++L+    D +E  +   ++   VA
Sbjct: 215 LKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVA 272

Query: 301 AKHGNWNIVSFILKSPEMENLIN 323
            +    +I+ ++ +  + +NL++
Sbjct: 273 DE----DILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.6 bits (140), Expect = 3e-10
 Identities = 44/278 (15%), Positives = 88/278 (31%), Gaps = 24/278 (8%)

Query: 109 PVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARL 168
           PV++        +       A ++     +  L+E+ +  + Y N    T L  A     
Sbjct: 27  PVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDN 85

Query: 169 NDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP 228
            D   F+++                          Y  + + L +    +  ++     P
Sbjct: 86  VDMVKFLVENGANINQPDNEGWIP---LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142

Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           L  A      ++ Q  +              E  +   A           +N        
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW--------LNSGHINDVR 194

Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
              S  + LHVAA  G   ++  +    +    +N+ D +G TPLH AA     +    L
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLL---IQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 349 SRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHL 386
             +   ++ A N+  +   A ++A+      ++I  +L
Sbjct: 252 VENL-CDMEAVNKVGQT--AFDVAD------EDILGYL 280

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.7 bits (153), Expect = 2e-12
 Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 5/194 (2%)

Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIID 177
            D  G T LH A         + L++  +  +S  N               +    F I 
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL---HAAVAADAMGVFQIL 75

Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
               + N      + T    +  R   + MV+ L T    I+  D   +  LH+AAA  N
Sbjct: 76  LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNN 135

Query: 238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSIL 297
            +    L          +D   ETPL LAA  G  +  K L++ + +  EI D+ DR   
Sbjct: 136 TEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPR 193

Query: 298 HVAAKHGNWNIVSF 311
            VA++  + +IV  
Sbjct: 194 DVASERLHHDIVRL 207

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 39/211 (18%), Positives = 85/211 (40%), Gaps = 7/211 (3%)

Query: 135 KRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTL 194
            +VI  L+ + +  ++ ++K  +T L +A      D+A  ++D   ++ +          
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTP-- 59

Query: 195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYK 254
                +  +   + +IL  N+        H        AA   ++     L  +      
Sbjct: 60  -LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
            D +G+T LH AA     + + +L+  + +  + +D+ D + L +AA+ G++     +L 
Sbjct: 119 ADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALL- 176

Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
             +      + D     P  +A+  LH D+V
Sbjct: 177 --DNFANREITDHMDRLPRDVASERLHHDIV 205

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 17/202 (8%)

Query: 77  ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKR 136
           ET LH+AAR       ++  K +                            +A       
Sbjct: 24  ETSLHLAARFAR----ADAAKRLLDAGA----------DANSQDNTGRTPLHAAVAADAM 69

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196
            +  ++ ++   +        T   I       +     +  +   +N      +  L  
Sbjct: 70  GVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHW 129

Query: 197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD 256
                 N    V IL  +    D  D     PL  AA  G+ + ++ LL+         D
Sbjct: 130 A--AAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR-EITD 186

Query: 257 CNGETPLHLAAENGKLKVLKLL 278
                P  +A+E     +++LL
Sbjct: 187 HMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 30/222 (13%), Positives = 58/222 (26%), Gaps = 26/222 (11%)

Query: 25  NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAA 84
            + +T    G T LH+A RF      + +L        + +         +    + +  
Sbjct: 14  ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQ 73

Query: 85  RIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK 144
            +      +   +             L     + D+       NA  N            
Sbjct: 74  ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG---------- 123

Query: 145 DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNY 204
                       +T L  A      ++   ++             +  T L       +Y
Sbjct: 124 ------------KTALHWAAAVNNTEAVNILLMHHANRDAQDDKDE--TPLFLAAREGSY 169

Query: 205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           +   K L  N    +  D   R P   A+   +  +  RLL+
Sbjct: 170 EA-SKALLDNFANREITDHMDRLPRDVASERLHHDIV-RLLD 209

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-09
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 6/159 (3%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE 181
               L  A      + +R L+ ++ V    +N+  +T L + +      +   +   +  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 182 SLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241
           ++  T              R  +   +K+L  +   ++  D     P+H A   G+  + 
Sbjct: 62  NVQDTSGTSP----VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 242 QRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
             L  ES    ++RD  G TPL LA + G   ++ +L  
Sbjct: 118 SFLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 7e-08
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 35/156 (22%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD-- 284
           + L  AAA G+V+  +RLL          +  G+T L +         L+LL        
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 285 -----------------------------AIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
                                         + + D +    +H+A + G+  +VSF+   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            +    ++  D  G TPL LA      D+V  L  H
Sbjct: 124 SD----LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 12/127 (9%)

Query: 227 NPLHYAAASGNVKMAQRLLEE-----SKQLAYKRDCNGETPLHLAAEN---GKLKVLKLL 278
           + L  A  + ++    +   +      K          ET LHLA  +     L ++  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 279 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
           +    +  +       ++ +         +   +     +     + + +G TPL +A  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI----EIANESGETPLDIAKR 123

Query: 339 GLHSDVV 345
             H    
Sbjct: 124 LKHEHCE 130

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 3/103 (2%)

Query: 193 TLLHFVVMRQNYDI--MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQ 250
           T LH  V   +     +V  L  N   +D+        LHY   + N +  + L    K 
Sbjct: 47  TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL-LRGKA 105

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSD 293
                + +GETPL +A         +LL            + +
Sbjct: 106 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE 148

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 28/131 (21%)

Query: 38  LHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVK 97
           L  AV+ R+   + +       +  ++    L   +  DET LH+A R  +R  +  IV 
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKI---PLANGHEPDETALHLAVRSVDRTSL-HIVD 65

Query: 98  YVPAV------------------------NQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ 133
           ++                                L   ++   + +  G TPL  A   +
Sbjct: 66  FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 125

Query: 134 HKRVIRILVEK 144
           H+    +L + 
Sbjct: 126 HEHCEELLTQA 136

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 8e-09
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 5/158 (3%)

Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESL 183
             L +A        +  L++ +   ++           + +          +   +P+  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 184 NTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
           + T              R  +   ++ L   +  ++  D     PLH AA  G++++ + 
Sbjct: 63  DRTGFAV-----IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 117

Query: 244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           L++ +      R+  G+T   LA   G+ +V+ L+   
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 19/153 (12%), Positives = 41/153 (26%), Gaps = 28/153 (18%)

Query: 227 NPLHYAAASGNVKMAQRLLEE----------------------------SKQLAYKRDCN 258
           N L  AAA G+++    LL+                                     D  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 318
             T   +  +  +   L  L        ++    +   L +       ++          
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            + +   +  G+T   LA +   ++VV  +  +
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 5/28 (17%), Positives = 11/28 (39%)

Query: 117 MRDIEGNTPLHNAVTNQHKRVIRILVEK 144
            R+ +G+T    A       V+ ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.2 bits (123), Expect = 8e-09
 Identities = 21/158 (13%), Positives = 56/158 (35%), Gaps = 6/158 (3%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP 180
           +    L  A        +RIL+   +  ++       +PL +A       +   ++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTD--WLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 181 ESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKM 240
                T++      +       N   ++   G +   ++  D  +   LH+A    + ++
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEV 115

Query: 241 AQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLL 278
            + LL +     + +    +T   ++ +NG   + ++L
Sbjct: 116 VE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 17/148 (11%), Positives = 36/148 (24%), Gaps = 33/148 (22%)

Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
            L  AA +G     + L+                 L     +     + L      DA  
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 288 IRDNSDRSI------------------------------LHVAAKHGNWNIVSFILKSPE 317
             D +   +                              LH A +H +  +V  +    +
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL---IK 121

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV 345
               ++   +   T   ++    + D+ 
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLA 149

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 19/169 (11%)

Query: 78  TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
             L  AAR G    V  ++                      D  G +PLH A    H   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT--------------TDWLGTSPLHLAAQYGHFST 49

Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHF 197
             +L+       +            A +   N     +   +  +         L     
Sbjct: 50  TEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL----H 105

Query: 198 VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                N+  +V++L      +       +     +  +GN  +A  +L+
Sbjct: 106 WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA-EILQ 153

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-05
 Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 5/119 (4%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
           + L  AAA G V+  + LLE                  +   + ++              
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVA-----ELLLLHGA 59

Query: 287 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
           E       ++            +  ++        +++ D  G  P+ LA    H DV 
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 9e-04
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 255 RDCNGETPLHLAAENGKLKVLKLLIN 280
           RD  G  P+ LA E G   V + L  
Sbjct: 98  RDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 4/125 (3%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE 181
               L  A        +R L+E  + P++  +   +    + + +        +    P 
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 182 SLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241
             +   L            R+ +   + +L      +D  D   R P+  A   G+  +A
Sbjct: 63  CADPATLTRP----VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 242 QRLLE 246
           + L  
Sbjct: 119 RYLRA 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (90), Expect = 1e-04
 Identities = 9/111 (8%), Positives = 28/111 (25%), Gaps = 5/111 (4%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
               +A  +G++   +  + + + +    +   +   + A            +       
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI-----LEFLLLKG 58

Query: 287 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
              +  D+  +           VS +           +   +G T L    
Sbjct: 59  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD 109

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 11/123 (8%), Positives = 30/123 (24%), Gaps = 1/123 (0%)

Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESL 183
             L ++       +++ ++ +   PS   ++      +             +      + 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 184 NTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
             +     L         Q    +V+  G     +   D             G  + +Q 
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 244 LLE 246
           L  
Sbjct: 122 LYG 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-54  Score=388.44  Aligned_cols=363  Identities=26%  Similarity=0.310  Sum_probs=325.1

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      ++||.|+..|++++|++|++.|++++..|..|+||||+|+..|+.+++++|+++         |++++.++..|+||||+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---------gadi~~~~~~g~t~L~~   72 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN---------KAKVNAKAKDDQTPLHC   72 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH---------TCCSSCCCTTSCCHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC---------cCCCCCCCCCCCCHHHH
Confidence            589999999999999999999999999999999999999999999999999997         57788999999999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcch--------------------hhhhhhcccCCCChHHHHHHHcCCHHHHHHHH
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPV--------------------LESLFRMRDIEGNTPLHNAVTNQHKRVIRILV  142 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  142 (415)
                      |+..|+.+++++|+..+++.........                    ........+..+.++++.|+..++.+++++|+
T Consensus        73 A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll  152 (408)
T d1n11a_          73 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL  152 (408)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHH
Confidence            9999999999999998876553222111                    01123446778999999999999999999999


Q ss_pred             hCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccc
Q 042906          143 EKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLD  222 (415)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  222 (415)
                      +.+.++. ..+..+.+||++|+..++.+++++|+..+.+....  +..+.+|++.+......+....++..... ....+
T Consensus       153 ~~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~~  228 (408)
T d1n11a_         153 ERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP--AWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAES  228 (408)
T ss_dssp             HTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             HcCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCccccc--CCCCCCcchhhhccchhhhhhhhhhcccc-ccccC
Confidence            9999876 67888999999999999999999999988765443  36788999999999999999999887765 55667


Q ss_pred             cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 042906          223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK  302 (415)
Q Consensus       223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~  302 (415)
                      ..+.||++.|+..+..+++++++..+.... ..+..|.||++.|+..++.+++++|+++|++ ++..+..+.||||.++.
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~  306 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASH  306 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHhCcHhHhhhhhccccccc-cccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcc
Confidence            788999999999999999999999988776 5788999999999999999999999999999 59999999999999999


Q ss_pred             cCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHH
Q 042906          303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEI  382 (415)
Q Consensus       303 ~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~  382 (415)
                      .++.++++++++.|++   ++.+|..|+||||+|++.|+.+++++|+++ |+|++++|.+|  +||||+|++       .
T Consensus       307 ~~~~~~~~~ll~~g~~---in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~~G--~t~L~~A~~-------~  373 (408)
T d1n11a_         307 YGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDG--TTPLAIAKR-------L  373 (408)
T ss_dssp             SSCSHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSS--CCHHHHHHH-------T
T ss_pred             cCcceeeeeecccccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCC--CCHHHHHHH-------c
Confidence            9999999999999987   999999999999999999999999999986 99999999999  999999999       4


Q ss_pred             HHHHHHHHHHH
Q 042906          383 QKHLTLKALKT  393 (415)
Q Consensus       383 ~~~~~~~~L~~  393 (415)
                      ++.++|++|..
T Consensus       374 ~~~~iv~~L~~  384 (408)
T d1n11a_         374 GYISVTDVLKV  384 (408)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            66677776643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-50  Score=363.30  Aligned_cols=339  Identities=26%  Similarity=0.360  Sum_probs=307.6

Q ss_pred             CCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhh
Q 042906           35 NTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL  114 (415)
Q Consensus        35 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  114 (415)
                      -||||+||+.|+.++|++|++.         |++++..|..|+||||+|+..|+.+++++|+++|++++           
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~---------g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~-----------   60 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQR---------GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-----------   60 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT---------TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-----------
T ss_pred             CChHHHHHHCcCHHHHHHHHHC---------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-----------
Confidence            3899999999999999999998         56788899999999999999999999999999999877           


Q ss_pred             hhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc--------------------------------cccccCCcHHHH
Q 042906          115 FRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS--------------------------------YINKAYQTPLSI  162 (415)
Q Consensus       115 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~--------------------------------~~~~~~~~~l~~  162 (415)
                        .++..|.||||+|+..|+.+++++|+..+.+...                                ..+..+.++++.
T Consensus        61 --~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  138 (408)
T d1n11a_          61 --AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV  138 (408)
T ss_dssp             --CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             --CCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHH
Confidence              5788999999999999999999999987654321                                234567899999


Q ss_pred             HHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHH
Q 042906          163 AIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ  242 (415)
Q Consensus       163 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  242 (415)
                      |+..++.++++++++.+.......  ..+.+||+.|+..++.+++++|+..+.+ ++..+..|.||+|.++.....++..
T Consensus       139 a~~~~~~~~v~~ll~~~~~~~~~~--~~~~~~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~~~~~~~~~~~~  215 (408)
T d1n11a_         139 AAKYGKVRVAELLLERDAHPNAAG--KNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVAR  215 (408)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCC--SSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcCC--CcCchHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCCcchhhhccchhhhhh
Confidence            999999999999999877655443  6788999999999999999999998876 7888899999999999999999999


Q ss_pred             HHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCccccc
Q 042906          243 RLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI  322 (415)
Q Consensus       243 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  322 (415)
                      .++..+.... ..+..+.|||+.|+..+..++++++++.+.. .+..+..|.||++.|+..++.+++++|+++|++   +
T Consensus       216 ~l~~~~~~~~-~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~---~  290 (408)
T d1n11a_         216 SLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---V  290 (408)
T ss_dssp             HHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---T
T ss_pred             hhhhcccccc-ccCCCCCCHHHHHHHhCcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCCCc---c
Confidence            9998887776 5778899999999999999999999999888 588999999999999999999999999999988   8


Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906          323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSA  402 (415)
Q Consensus       323 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~  402 (415)
                      +..+..+.|||+.++..++.++++++++. |++++.+|.+|  .||||+|++       .++.++|++|+++||++++.+
T Consensus       291 ~~~~~~~~t~L~~~~~~~~~~~~~~ll~~-g~~in~~d~~G--~T~Lh~A~~-------~g~~~iv~~Ll~~GAd~n~~d  360 (408)
T d1n11a_         291 DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLG--YSPLHQAAQ-------QGHTDIVTLLLKNGASPNEVS  360 (408)
T ss_dssp             TCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHTTCCSCCCC
T ss_pred             ccccccccccchhhcccCcceeeeeeccc-cccccccCCCC--CCHHHHHHH-------cCCHHHHHHHHHCCCCCCCCC
Confidence            88999999999999999999999999986 99999999999  999999999       578899999999999999998


Q ss_pred             HHHHHHHhhhh
Q 042906          403 EELQQKRQVSK  413 (415)
Q Consensus       403 ~~~~~~~~~~~  413 (415)
                      +.+.++.+.+.
T Consensus       361 ~~G~t~L~~A~  371 (408)
T d1n11a_         361 SDGTTPLAIAK  371 (408)
T ss_dssp             SSSCCHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            88888877664

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-40  Score=275.21  Aligned_cols=249  Identities=19%  Similarity=0.189  Sum_probs=153.2

Q ss_pred             cccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCC
Q 042906           27 FSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAG  106 (415)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  106 (415)
                      +...+++|+||||+||+.|+.+++++|++.+++      ...++.+|..|+||||+|+..|+.+++++|+++|++++   
T Consensus         2 ~~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~------~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~---   72 (255)
T d1oy3d_           2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---   72 (255)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---
T ss_pred             CccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCC------cccccCcCCCCCCccchHHhhccccccccccccccccc---
Confidence            345678999999999999999999999998543      24477889999999999999999999999999999877   


Q ss_pred             CcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCC
Q 042906          107 PLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT  186 (415)
Q Consensus       107 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  186 (415)
                                .+|..|.||||+|+..++.+++++|++.+........    ..+.........                 
T Consensus        73 ----------~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~----~~~~~~~~~~~~-----------------  121 (255)
T d1oy3d_          73 ----------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS----DTYLTQSQDCTP-----------------  121 (255)
T ss_dssp             ----------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred             ----------ccccccchhhhhhhccCchHHHHHHHhhccchhcccc----hhhhhHHhhhcc-----------------
Confidence                      5688999999999999999999999887654321111    000000000000                 


Q ss_pred             CCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHH
Q 042906          187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLA  266 (415)
Q Consensus       187 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  266 (415)
                        ......+..............+...                                 .+...+ .++..|.||||+|
T Consensus       122 --~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~in-~~d~~g~TpLh~A  165 (255)
T d1oy3d_         122 --DTSHAPAAVDSQPNPENEEEPRDED---------------------------------WRLQLE-AENYDGHTPLHVA  165 (255)
T ss_dssp             ------------------------CCC---------------------------------GGGGTT-CCCTTSCCHHHHH
T ss_pred             --cchHHHHHHHhhcchhHHHHHHhhh---------------------------------cCcccc-cccccCccccccc
Confidence              0000000000000000111111111                                 222222 3455566666666


Q ss_pred             HHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHH
Q 042906          267 AENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (415)
Q Consensus       267 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  346 (415)
                      +..++.+++++|++.++......+..|.||||+|+..++.+++++|+++|++   ++.+|..|+||||+|+..++.++++
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad---in~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            6666666666666666554334455566666666666666666666666655   6666666666666666666666666


Q ss_pred             HHhhccCcC
Q 042906          347 TLSRHKSVN  355 (415)
Q Consensus       347 ~Ll~~~g~~  355 (415)
                      +|+++ ||+
T Consensus       243 ~Ll~~-Ga~  250 (255)
T d1oy3d_         243 LLRAH-GAP  250 (255)
T ss_dssp             HHHHT-TCC
T ss_pred             HHHHc-CCC
Confidence            66654 664

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-38  Score=266.62  Aligned_cols=231  Identities=16%  Similarity=0.141  Sum_probs=169.5

Q ss_pred             cCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc
Q 042906           71 QKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS  150 (415)
Q Consensus        71 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  150 (415)
                      ..+.+|.||||+||+.|+.+++++|+++|++...          ++.+|..|.||||+|+..|+.+++++|++.|+++. 
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~----------i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-   72 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY----------LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-   72 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG----------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCccc----------ccCcCCCCCCccchHHhhccccccccccccccccc-
Confidence            4678899999999999999999999999987543          45678899999999999999999999999999886 


Q ss_pred             cccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHH
Q 042906          151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH  230 (415)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  230 (415)
                      ..+..|.|||++|+..++.++++++++..........     .......                     ......+...
T Consensus        73 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~-----~~~~~~~---------------------~~~~~~~~~~  126 (255)
T d1oy3d_          73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS-----DTYLTQS---------------------QDCTPDTSHA  126 (255)
T ss_dssp             CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------------------------
T ss_pred             ccccccchhhhhhhccCchHHHHHHHhhccchhcccc-----hhhhhHH---------------------hhhcccchHH
Confidence            6788999999999999999999998865443221110     0000000                     0000000000


Q ss_pred             HHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCC-HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHH
Q 042906          231 YAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK-LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV  309 (415)
Q Consensus       231 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  309 (415)
                      .                               +........ ..........+.. ++.++..|+||||+|+..++.+++
T Consensus       127 ~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~~v  174 (255)
T d1oy3d_         127 P-------------------------------AAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMV  174 (255)
T ss_dssp             ------------------------------------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             H-------------------------------HHHHhhcchhHHHHHHhhhcCcc-cccccccCcccccccccccccccc
Confidence            0                               000000000 0111112223333 578899999999999999999999


Q ss_pred             HHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          310 SFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       310 ~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      ++|++.+...  ....+..|.||||+|+..++.+++++|+++ |++++.+|..|  +||||+|+++
T Consensus       175 ~~Ll~~~~~~--~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~-gadin~~d~~g--~t~L~~A~~~  235 (255)
T d1oy3d_         175 RLLRDAGADL--NKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGG--RTPLGSALLR  235 (255)
T ss_dssp             HHHHHHTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHTS
T ss_pred             cchhcccccc--cccccccccccccccccccHHHHHHHHHHC-CCCCCCCCCCC--CCHHHHHHHC
Confidence            9999998773  234567899999999999999999999986 99999999999  9999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=264.46  Aligned_cols=273  Identities=20%  Similarity=0.208  Sum_probs=221.7

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCC-CCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906           34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKN-LMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE  112 (415)
Q Consensus        34 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (415)
                      +.|+||.|++.|++++|++|++.         |++++.++ ..|+||||+|+..|+.+++++|++.++...         
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~---------G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~---------   66 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEG---------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV---------   66 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHC---------CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc---------
Confidence            56889999999999999999998         45555444 568899999999999999999999888665         


Q ss_pred             hhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcch
Q 042906          113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL  192 (415)
Q Consensus       113 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  192 (415)
                          ..+..+.+|.++++..+..+...+++....+.. ..+..+.++++.|+..+....+..++............    
T Consensus        67 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----  137 (285)
T d1wdya_          67 ----LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT----  137 (285)
T ss_dssp             ----CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC----
T ss_pred             ----ccccccchhhHHHhhcCCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccc----
Confidence                456678889999999999999988888876554 56777888888888888888887777655443222110    


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHh-chhhhhccCCCCCCHHHHHHHc--
Q 042906          193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE-SKQLAYKRDCNGETPLHLAAEN--  269 (415)
Q Consensus       193 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~--  269 (415)
                                            ..........|.||||+|+++++.+++++|+++ |.+++ ..+..|.+++..+...  
T Consensus       138 ----------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~-~~~~~~~~~~~~~~~~~~  194 (285)
T d1wdya_         138 ----------------------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSD  194 (285)
T ss_dssp             ----------------------CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSC
T ss_pred             ----------------------hhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcc-cccCCCCccccccccccc
Confidence                                  011223455688999999999999999999976 45555 6788888888776553  


Q ss_pred             --CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhC-CCcccccccCCCCCCcHHHHHHhcCChHHHH
Q 042906          270 --GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (415)
Q Consensus       270 --~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  346 (415)
                        +..+++++|+++|++ ++.++..|.||||+|++.++.+++++|++. |.+   ++.+|..|+||||+|++.|+.++++
T Consensus       195 ~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d---in~~d~~G~TpL~~A~~~~~~eiv~  270 (285)
T d1wdya_         195 DSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             TTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCC---CcCCCCCCCCHHHHHHHcCCHHHHH
Confidence              345799999999999 599999999999999999999999999985 655   9999999999999999999999999


Q ss_pred             HHhhccCcCcccccc
Q 042906          347 TLSRHKSVNIRAKNR  361 (415)
Q Consensus       347 ~Ll~~~g~~~~~~d~  361 (415)
                      +||++ |||+|++|.
T Consensus       271 ~Ll~~-GAd~n~~d~  284 (285)
T d1wdya_         271 LLCKR-GASTDCGDL  284 (285)
T ss_dssp             HHHHH-SSCSCCSSC
T ss_pred             HHHHC-CCCCCcccC
Confidence            99986 999999984

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-38  Score=267.88  Aligned_cols=266  Identities=21%  Similarity=0.235  Sum_probs=232.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHc
Q 042906          122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMR  201 (415)
Q Consensus       122 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~  201 (415)
                      +.|+|+.|++.|+.++|++|++.|+++....+..|.||||+|+..++.+++++|++.+.......  ..+.++.+.+...
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~--~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK--KNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccc--cccchhhHHHhhc
Confidence            57999999999999999999999999876777889999999999999999999999887665554  5677899999999


Q ss_pred             CCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhh---------hccCCCCCCHHHHHHHcCCH
Q 042906          202 QNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA---------YKRDCNGETPLHLAAENGKL  272 (415)
Q Consensus       202 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~---------~~~~~~g~t~L~~A~~~~~~  272 (415)
                      +..+.....+..... ....+..+.++++.|+..++...+..++....+..         ......|.||||+|+..++.
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          83 GSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             TCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             CCccccchhhhhccc-ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence            999999999987755 45567789999999999999999999988655432         12456799999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHHHHHHhc----CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906          273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKH----GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (415)
Q Consensus       273 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  348 (415)
                      +++++|+++....++..+..|.++++.+...    +..+++++|+++|++   ++.++..|.||||+|+..|+.+++++|
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~---~n~~~~~g~t~L~~a~~~~~~~~v~~l  238 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRL  238 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC---CCccCCCCCCccchhhhcCcHHHHHHH
Confidence            9999999874333699999999988876653    345799999999988   899999999999999999999999999


Q ss_pred             hhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906          349 SRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSA  402 (415)
Q Consensus       349 l~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~  402 (415)
                      +++.|++++.+|.+|  .||||+|++       .++.+++++|+++||++++.+
T Consensus       239 L~~~g~din~~d~~G--~TpL~~A~~-------~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         239 LEQEHIEINDTDSDG--KTALLLAVE-------LKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHSSSCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHcCCCCCcCCCCCC--CCHHHHHHH-------cCCHHHHHHHHHCCCCCCccc
Confidence            988899999999999  999999999       578899999999999988764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-37  Score=254.84  Aligned_cols=227  Identities=25%  Similarity=0.288  Sum_probs=176.1

Q ss_pred             CCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhh
Q 042906           35 NTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL  114 (415)
Q Consensus        35 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  114 (415)
                      +||||+||+.|+.++++.|++.        .+..++.+|.+|+||||+|+..|+.+++++|+++|++++.          
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~--------~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~----------   62 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHS--------KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL----------   62 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH--------CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG----------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHc--------CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccc----------
Confidence            4799999999999999999887        4677888899999999999999999999999998887763          


Q ss_pred             hhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhH
Q 042906          115 FRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTL  194 (415)
Q Consensus       115 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~  194 (415)
                      ....+..|.+|+++++..+..++++.++..+....                                             
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------   97 (229)
T d1ixva_          63 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD---------------------------------------------   97 (229)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCC---------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccc---------------------------------------------
Confidence            22456778888888888888888888777664321                                             


Q ss_pred             HHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHH
Q 042906          195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKV  274 (415)
Q Consensus       195 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  274 (415)
                                             ....+..+.++++.++..++.++++.|+..+.... ..+..|+||||+|+..++.++
T Consensus        98 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~  153 (229)
T d1ixva_          98 -----------------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSLKL  153 (229)
T ss_dssp             -----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHH
T ss_pred             -----------------------ccccccccccccccccccchhhhhhhhhhhccccc-ccCCCCCCccchhhhcccccc
Confidence                                   11122334567777777777777777777777665 467778888888888888888


Q ss_pred             HHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhh-CCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccC
Q 042906          275 LKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK-SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS  353 (415)
Q Consensus       275 v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g  353 (415)
                      +++|++.+...++.+|..|+||||+|+.+++.+++++|++ .|++   ++.+|..|+||||+|+.   .+++++|+++ |
T Consensus       154 ~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad---~~~~d~~g~t~l~~A~~---~~~~~~Ll~~-g  226 (229)
T d1ixva_         154 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALN---EQVKKFFLNN-V  226 (229)
T ss_dssp             HHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC---SCCCCTTSCCTGGGCSC---HHHHHHHHHH-C
T ss_pred             cccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC---CCCcCCCCCCHHHHHhh---HHHHHHHHHc-C
Confidence            8888888766578888888888888888888888888886 4666   78888888888888873   4788888875 7


Q ss_pred             cC
Q 042906          354 VN  355 (415)
Q Consensus       354 ~~  355 (415)
                      +|
T Consensus       227 ~d  228 (229)
T d1ixva_         227 VD  228 (229)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-36  Score=244.61  Aligned_cols=220  Identities=20%  Similarity=0.278  Sum_probs=178.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHc
Q 042906          122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMR  201 (415)
Q Consensus       122 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~  201 (415)
                      +.+.++.++..|+.+.++.++..++......|..|+||||+|+..|+.+++++++..........  ..+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--DAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCC--TTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccc--ccccccccccccc
Confidence            46789999999999999888887776667889999999999999999999999998876655444  4566788888888


Q ss_pred             CCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 042906          202 QNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK  281 (415)
Q Consensus       202 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  281 (415)
                      ++.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|++.
T Consensus        81 ~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCccchhhhhcCCcchhhhhccc
Confidence            888888888877754 67777788888888888888888888888887776 5677788888888888888888888888


Q ss_pred             CCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906          282 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (415)
Q Consensus       282 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  350 (415)
                      +.+ ++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+| ..|+.+++++|++
T Consensus       159 ~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad---~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         159 KAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS---IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cce-eeeccCCCCceeccccccCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            777 588888888888888888888888888888776   778888888888877 4677888888874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-36  Score=249.81  Aligned_cols=227  Identities=21%  Similarity=0.244  Sum_probs=191.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcC
Q 042906          123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQ  202 (415)
Q Consensus       123 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~  202 (415)
                      ++|||+|+..|+.++++.|++.++.....++..|.||||+|+..|+.+++++|++.+.+...                  
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~------------------   62 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL------------------   62 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG------------------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccc------------------
Confidence            47899999999998888888876555556777788888888777777777777765432211                  


Q ss_pred             CHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhh-hccCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 042906          203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA-YKRDCNGETPLHLAAENGKLKVLKLLINK  281 (415)
Q Consensus       203 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  281 (415)
                                     ....+..|.+++++++..+..++++.++..+.... ...+..+.++++.++..++.++++.|+..
T Consensus        63 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  127 (229)
T d1ixva_          63 ---------------DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN  127 (229)
T ss_dssp             ---------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ---------------cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence                           23346678899999999999999999888876443 24567789999999999999999999999


Q ss_pred             CCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccc
Q 042906          282 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  361 (415)
Q Consensus       282 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~  361 (415)
                      +.. .+..+..|+||||+|+..++.+++++|++.+..  .++.+|..|+||||+|+..|+.+++++|++..|+|++.+|.
T Consensus       128 ~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~  204 (229)
T d1ixva_         128 GAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS--AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN  204 (229)
T ss_dssp             TCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCT
T ss_pred             ccc-ccccCCCCCCccchhhhcccccccccccccccc--cccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCC
Confidence            988 588999999999999999999999999998743  28999999999999999999999999999867999999999


Q ss_pred             ccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          362 SARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       362 ~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      +|  +||||+|+..          +++++|+++|||
T Consensus       205 ~g--~t~l~~A~~~----------~~~~~Ll~~g~d  228 (229)
T d1ixva_         205 KG--AKAEDVALNE----------QVKKFFLNNVVD  228 (229)
T ss_dssp             TS--CCTGGGCSCH----------HHHHHHHHHCCC
T ss_pred             CC--CCHHHHHhhH----------HHHHHHHHcCCC
Confidence            99  9999999872          499999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-36  Score=244.04  Aligned_cols=220  Identities=24%  Similarity=0.278  Sum_probs=199.4

Q ss_pred             CCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhc
Q 042906          156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (415)
Q Consensus       156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  235 (415)
                      ..+.++.++..|+.+.++.++...+... ...+..|+||||+|+..|+.+++++++..... .......+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~-~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcC-cCcCCCCCCHHHHHHHhhhhcccccccccccc-cccccccccccccccccc
Confidence            3578888999999999988887765543 34557899999999999999999999988865 555566788999999999


Q ss_pred             CCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhC
Q 042906          236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS  315 (415)
Q Consensus       236 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  315 (415)
                      ++.+++++|++++.+++ ..+..|.||||+|+..++.+++++|+++|++ ++.++..|.||||+|+..++.+++++|++.
T Consensus        81 ~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            99999999999999887 6899999999999999999999999999998 599999999999999999999999999999


Q ss_pred             CCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 042906          316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKT  393 (415)
Q Consensus       316 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~  393 (415)
                      +.+   ++.+|..|+||||+|+..|+.+++++|+++ |+|++.+|..|  +||||+|..        ++.+|++.|++
T Consensus       159 ~~~---i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~-Gad~~~~d~~g--~tpl~~A~~--------~~~~i~~~Ll~  222 (223)
T d1uoha_         159 KAS---TNIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEE--KTPLQVAKG--------GLGLILKRMVE  222 (223)
T ss_dssp             TCC---SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTS--CCHHHHCCT--------THHHHHHHHHC
T ss_pred             cce---eeeccCCCCceeccccccCcHHHHHHHHHC-CCCCCCCCCCC--CCHHHHHHC--------CCHHHHhcccC
Confidence            887   999999999999999999999999999986 99999999999  999999954        67779999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=6.5e-36  Score=255.18  Aligned_cols=275  Identities=20%  Similarity=0.185  Sum_probs=191.9

Q ss_pred             HHcCChhHHHHHHhhccccccCC---------CCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCCh
Q 042906            9 LRNGDENKIKQLALRQNIFSTSS---------PGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETP   79 (415)
Q Consensus         9 ~~~g~~~~v~~ll~~~~~~~~~~---------~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~   79 (415)
                      +++...+.++.++....+.+..-         ..+.|+|+.||..|+.++|++|++.         |++++.+|.+|+||
T Consensus         6 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~---------Gadvn~~d~~G~T~   76 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER---------GADINYANVDGLTA   76 (291)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH---------CCCTTCBCTTCCBH
T ss_pred             HhHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHC---------CCCCCccCCCCCcH
Confidence            44555677777777664443222         1234788888888888888888886         56677888888888


Q ss_pred             HHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcH
Q 042906           80 LHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP  159 (415)
Q Consensus        80 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  159 (415)
                      ||+|+.+|+.+++++|+++|++..             ..+..+.+||+.|+..++.++++.|++.|.... ..+..+.++
T Consensus        77 L~~A~~~g~~eiv~~Ll~~~~~~~-------------~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  142 (291)
T d1s70b_          77 LHQACIDDNVDMVKFLVENGANIN-------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTP  142 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HHHHHhcCCceeeeeecccccccc-------------cccccccccccccccccccchhhcccccCcccc-cccccCccc
Confidence            888888888888888888887654             346677888888888888888888888776543 344445555


Q ss_pred             HHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHH
Q 042906          160 LSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK  239 (415)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  239 (415)
                      +++|+..+..+.+..++                                   ...+........                
T Consensus       143 ~~~a~~~~~~~~~~~ll-----------------------------------~~~~~~~~~~~~----------------  171 (291)
T d1s70b_         143 LDIAEEEAMEELLQNEV-----------------------------------NRQGVDIEAARK----------------  171 (291)
T ss_dssp             HHHCCSHHHHHHHHHHH-----------------------------------HHHTCCHHHHHH----------------
T ss_pred             cccccccccchhccccc-----------------------------------cccccccccccc----------------
Confidence            55444333333333322                                   211110000000                


Q ss_pred             HHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcc
Q 042906          240 MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME  319 (415)
Q Consensus       240 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  319 (415)
                                               .............+...... ....+..|.||||+|+..++.+++++|++.|++ 
T Consensus       172 -------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-  224 (291)
T d1s70b_         172 -------------------------EEERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-  224 (291)
T ss_dssp             -------------------------HHHHHHHHHHHHHHHHTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-
T ss_pred             -------------------------cccccccccchhhhcccccc-cccccCCCCChhhHHHHcCChhhhcccccceec-
Confidence                                     00000001122222222333 356677899999999999999999999999887 


Q ss_pred             cccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 042906          320 NLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRA  399 (415)
Q Consensus       320 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~  399 (415)
                        ++.++..|+||||+|+..|+.+++++|+++ |+|++.+|..|  +||||+|++.           ++++|.+.++..+
T Consensus       225 --in~~~~~g~TpL~~A~~~g~~~iv~lLl~~-Gadv~~~d~~G--~TaL~~A~e~-----------~~~~L~~~~~~~~  288 (291)
T d1s70b_         225 --VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVG--QTAFDVADED-----------ILGYLEELQKKQN  288 (291)
T ss_dssp             --TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCTTTSCCSG-----------GGHHHHHHHHHTT
T ss_pred             --ccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCC--CCHHHHHHHH-----------HHHHHHHHhhhcc
Confidence              899999999999999999999999999985 99999999999  9999999872           8889988888766


Q ss_pred             h
Q 042906          400 L  400 (415)
Q Consensus       400 ~  400 (415)
                      +
T Consensus       289 ~  289 (291)
T d1s70b_         289 L  289 (291)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.1e-36  Score=258.11  Aligned_cols=271  Identities=15%  Similarity=0.224  Sum_probs=181.3

Q ss_pred             hHHHHHHH-cCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            3 QELLEVLR-NGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         3 ~~L~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      ++|+.+++ .|+.++++.|.+.+.+... +.+|+||||+||..|+.+++++|+......-+ ..|++++.+|.+|+||||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l-~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECI-AAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHH-HTCCCTTCCCTTSCCHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHH-HcCCCccccCCCCCeeec
Confidence            44553333 4666666666666655422 24699999999999999999999877432221 246788999999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCC--CcccccccCCcH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV--PSSYINKAYQTP  159 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~~~~~  159 (415)
                      +|+..|+.++|++|+++|++++             .++..|.||+++|+..++.++++++...+..  .....+..+.++
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n-------------~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  146 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPT-------------IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA  146 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSC-------------CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred             cccccccccccccccccccccc-------------cccccccccccchhhhcchhhhhhhhhcccccccccccccccchh
Confidence            9999999999999999999877             5688999999999999999999998765421  111234444555


Q ss_pred             HHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHH
Q 042906          160 LSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK  239 (415)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  239 (415)
                      .+.+...+..+....                                +..+......    ....               
T Consensus       147 ~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~----~~~~---------------  175 (277)
T d2fo1e1         147 LMIVAHNEGRDQVAS--------------------------------AKLLVEKGAK----VDYD---------------  175 (277)
T ss_dssp             HHHHHHSCSTTHHHH--------------------------------HHHHHHHTCC----SSCC---------------
T ss_pred             HHHHHhccccccccc--------------------------------cccccccccc----cccc---------------
Confidence            555544332221111                                1111111100    0000               


Q ss_pred             HHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcc
Q 042906          240 MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME  319 (415)
Q Consensus       240 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  319 (415)
                             ...... ..+..|.||||+++..++.+++++++.......+.+|..|+||||+|+..|+.+++++|+++|++ 
T Consensus       176 -------~~~~~~-~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-  246 (277)
T d2fo1e1         176 -------GAARKD-SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-  246 (277)
T ss_dssp             -------SGGGTS-SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred             -------cccccc-ccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-
Confidence                   000111 34556777777777777777777666554444567777777777777777777777777777766 


Q ss_pred             cccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906          320 NLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (415)
Q Consensus       320 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  350 (415)
                        ++.+|..|+||||+|+..|+.+++++|++
T Consensus       247 --in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         247 --VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             --SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             --CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence              77777777777777777777777777775

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.2e-36  Score=258.05  Aligned_cols=250  Identities=21%  Similarity=0.272  Sum_probs=182.3

Q ss_pred             CCHHHHHHHh-CCHHHHHHHHhccchHHHHHHhHhhhcCC-CCCCChHHHHHHhCcHHHHHHHH--------hhcccccc
Q 042906           35 NTVLHMAVRF-RNQQVIREILRQQNFIALRLHYSLLRQKN-LMDETPLHIAARIGNRAIVSEIV--------KYVPAVNQ  104 (415)
Q Consensus        35 ~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~  104 (415)
                      .||||++++. |+.++++.|.+.         +  ++..+ .+|+||||+||..|+.++|++|+        +.|++++ 
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~---------~--~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn-   68 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRE---------S--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-   68 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTT---------T--TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-
T ss_pred             CChHHHHHHhCCCHHHHHHHHhc---------C--CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc-
Confidence            4899977766 555555555454         2  33334 46999999999999999888775        5566666 


Q ss_pred             CCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCcc
Q 042906          105 AGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLN  184 (415)
Q Consensus       105 ~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  184 (415)
                                  .+|.+|.||||+|+..|+.+++++|+++|+++. ..+..|.||+++|+..++.++..++.....    
T Consensus        69 ------------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~----  131 (277)
T d2fo1e1          69 ------------AMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTK----  131 (277)
T ss_dssp             ------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHH----
T ss_pred             ------------ccCCCCCeeeccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhccc----
Confidence                        678899999999999999999999999999876 567778888888887777777766652110    


Q ss_pred             CCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHH---HHHHHhchhhhhccCCCCCC
Q 042906          185 TTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA---QRLLEESKQLAYKRDCNGET  261 (415)
Q Consensus       185 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~---~~Ll~~~~~~~~~~~~~g~t  261 (415)
                                                   ....++..+..+.++.+.+...+..+..   ..+.+......    .  . 
T Consensus       132 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~-  175 (277)
T d2fo1e1         132 -----------------------------LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD----Y--D-  175 (277)
T ss_dssp             -----------------------------HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSS----C--C-
T ss_pred             -----------------------------ccccccccccccchhHHHHHhccccccccccccccccccccc----c--c-
Confidence                                         0011333455566777776665543322   22222111100    0  0 


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhh-CCCcccccccCCCCCCcHHHHHHhcC
Q 042906          262 PLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK-SPEMENLINLVDRNGNTPLHLAAMGL  340 (415)
Q Consensus       262 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~g~t~l~~A~~~~  340 (415)
                                          .....+..+..|.|+||+++..++.+++++++. .+.+   ++.+|..|+||||+|+..|
T Consensus       176 --------------------~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~---~~~~d~~g~tpL~~A~~~g  232 (277)
T d2fo1e1         176 --------------------GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEG  232 (277)
T ss_dssp             --------------------SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHT
T ss_pred             --------------------ccccccccccCCCCcccccccccccccccccccccccc---ccccCCCCCCHHHHHHHcC
Confidence                                001135567789999999999999999987665 4544   7889999999999999999


Q ss_pred             ChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          341 HSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       341 ~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      +.+++++|+++ |+|++.+|.+|  +||||+|++.
T Consensus       233 ~~~iv~~Ll~~-gadin~~d~~G--~T~L~~A~~~  264 (277)
T d2fo1e1         233 RIEVVMYLIQQ-GASVEAVDATD--HTARQLAQAN  264 (277)
T ss_dssp             CHHHHHHHHHT-TCCSSCCCSSS--CCHHHHHHHT
T ss_pred             CHHHHHHHHHC-cCCCCCcCCCC--CCHHHHHHHc
Confidence            99999999986 99999999999  9999999995

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=9.3e-35  Score=247.95  Aligned_cols=122  Identities=22%  Similarity=0.259  Sum_probs=111.9

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      ++|+.|+..|+++.|++||+.|++++..|.+|.||||+|+..|+.+++++|+++         +......+..+.+||++
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~---------~~~~~~~~~~~~~~L~~  112 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN---------GANINQPDNEGWIPLHA  112 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccc---------ccccccccccccccccc
Confidence            569999999999999999999999999999999999999999999999999998         45567778889999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS  146 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  146 (415)
                      |+..++.+++++|+++|+..+             ..+..+.+|+++|+..+..+.++.++....
T Consensus       113 a~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~  163 (291)
T d1s70b_         113 AASCGYLDIAEYLISQGAHVG-------------AVNSEGDTPLDIAEEEAMEELLQNEVNRQG  163 (291)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             cccccccchhhcccccCcccc-------------cccccCccccccccccccchhccccccccc
Confidence            999999999999999998655             568899999999999999999999986543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-32  Score=222.33  Aligned_cols=226  Identities=23%  Similarity=0.273  Sum_probs=143.6

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906           33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE  112 (415)
Q Consensus        33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (415)
                      +|+||||+||..|+.+++++|++...     ..+++++.+|..|+||||+|+..|+.+++++|+++|++.+         
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~-----~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~---------   67 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQ-----QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM---------   67 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHH-----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCccCCCCCccceehhccccccccccccccccccc---------
Confidence            57888888888888888888876421     1355677777778888888888888888888888777655         


Q ss_pred             hhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcch
Q 042906          113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL  192 (415)
Q Consensus       113 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  192 (415)
                          .....+.++++.|...++.++++.+..........                                         
T Consensus        68 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------  102 (228)
T d1k1aa_          68 ----ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD-----------------------------------------  102 (228)
T ss_dssp             ----CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC-----------------------------------------
T ss_pred             ----ccccccccccccccccccccchhhhhhcccccccc-----------------------------------------
Confidence                34556777777777777777777665543321100                                         


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH
Q 042906          193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL  272 (415)
Q Consensus       193 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  272 (415)
                                               .+.......++++.+.........+.|..............+.++|+.|+..+..
T Consensus       103 -------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_         103 -------------------------LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             -------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             -------------------------ccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence                                     0111122334455555555555555555554444434455566666666666666


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHH
Q 042906          273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (415)
Q Consensus       273 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  346 (415)
                      .+++++++.+.. .+.++..|.||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|++.|+.+++|
T Consensus       158 ~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad---~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         158 SMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhCCCccccC
Confidence            666666666665 366666666666666666666666666666655   6666666666666666666666653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-32  Score=220.44  Aligned_cols=215  Identities=25%  Similarity=0.289  Sum_probs=168.2

Q ss_pred             CCCChHHHHHHhCcHHHHHHHHh----hccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc
Q 042906           75 MDETPLHIAARIGNRAIVSEIVK----YVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS  150 (415)
Q Consensus        75 ~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  150 (415)
                      +|+||||+||..|+.+++++|++    .|++++             .+|..|.||||+|+..|+.+++++|++.|++.. 
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-------------~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-   67 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-   67 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------------ccCCCCCccceehhccccccccccccccccccc-
Confidence            58999999999999999888875    556555             568889999999999999999999999887654 


Q ss_pred             cccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHH
Q 042906          151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH  230 (415)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  230 (415)
                      .....+.++++.|...                                   .+.+.++.+......              
T Consensus        68 ~~~~~~~~~~~~a~~~-----------------------------------~~~~~~~~~~~~~~~--------------   98 (228)
T d1k1aa_          68 ALDRHGQTAAHLACEH-----------------------------------RSPTCLRALLDSAAP--------------   98 (228)
T ss_dssp             CCCTTSCCHHHHHHHT-----------------------------------TCHHHHHHHHHHSCT--------------
T ss_pred             cccccccccccccccc-----------------------------------ccccchhhhhhcccc--------------
Confidence            3333333443333333                                   333222222221111              


Q ss_pred             HHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHH
Q 042906          231 YAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVS  310 (415)
Q Consensus       231 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  310 (415)
                                       .............++|+.+.........+.|.....+........+.++++.|+..+...+++
T Consensus        99 -----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          99 -----------------GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             -----------------TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             -----------------ccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                             000111345567789999999999999999999888766677888999999999999999999


Q ss_pred             HHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          311 FILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       311 ~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      ++++.|..   ++.+|..|.||||+|+..|+.+++++|+++ |+|++.+|.+|  +||||+|+++
T Consensus       162 ~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-Gad~n~~d~~G--~TpL~~A~~~  220 (228)
T d1k1aa_         162 LLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHN--DTPLMVARSR  220 (228)
T ss_dssp             HHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTS--CCTTTTCSSH
T ss_pred             hhhhhccc---cccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCC--CCHHHHHHhC
Confidence            99999877   889999999999999999999999999986 99999999999  9999999874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.1e-32  Score=219.84  Aligned_cols=199  Identities=18%  Similarity=0.231  Sum_probs=155.9

Q ss_pred             CCCChHHHHHHhCcHH----HHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc
Q 042906           75 MDETPLHIAARIGNRA----IVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS  150 (415)
Q Consensus        75 ~g~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  150 (415)
                      +|.||||+|+..|+.+    +++++...|++++             .+|.+|+||||+|+..++.+++++|++.|+++. 
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-------------~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-   66 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-------------FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-   66 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-------------CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-------------cCCCCCCcccccccccccccccccccccccccc-
Confidence            5899999999999864    4556666677665             678999999999999999999999999999876 


Q ss_pred             cccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHH
Q 042906          151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH  230 (415)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  230 (415)
                      ..+..|.+|+++++..+..++++.++.........                              .........|.||+|
T Consensus        67 ~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~------------------------------~~~~~~~~~~~t~l~  116 (221)
T d1iknd_          67 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH------------------------------SILKATNYNGHTCLH  116 (221)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS------------------------------CGGGCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccccchhhhhccccccc------------------------------ccccccccccchhhh
Confidence            67888889999999888888888887654332111                              113334455778888


Q ss_pred             HHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHH
Q 042906          231 YAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVS  310 (415)
Q Consensus       231 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  310 (415)
                      .|+..++.+++++|+..+...+...+.+|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.++++
T Consensus       117 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~  195 (221)
T d1iknd_         117 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQ  195 (221)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             HHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHH
Confidence            888888888888888888877755667788888888888888888888888888 5888888888888888888888888


Q ss_pred             HHhhCCCc
Q 042906          311 FILKSPEM  318 (415)
Q Consensus       311 ~Ll~~~~~  318 (415)
                      +|++...+
T Consensus       196 ~l~~~~~~  203 (221)
T d1iknd_         196 QLGQLTLE  203 (221)
T ss_dssp             HHHTTSCG
T ss_pred             HHHHcCCc
Confidence            88877544

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-31  Score=218.87  Aligned_cols=204  Identities=20%  Similarity=0.273  Sum_probs=165.3

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906           33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE  112 (415)
Q Consensus        33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (415)
                      +|.||||+|+..|+.++++.|++....     .+..++.+|.+|+||||+|+..|+.+++++|+++|++++         
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~-----~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~---------   66 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKG-----DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE---------   66 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC----------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC---------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHh-----CCCCcccCCCCCCcccccccccccccccccccccccccc---------
Confidence            599999999999997666655543211     256789999999999999999999999999999999877         


Q ss_pred             hhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcch
Q 042906          113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL  192 (415)
Q Consensus       113 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  192 (415)
                          .+|..|.|||++|+..++.++++.|++.+........                              .......+.
T Consensus        67 ----~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------------~~~~~~~~~  112 (221)
T d1iknd_          67 ----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI------------------------------LKATNYNGH  112 (221)
T ss_dssp             ----CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG------------------------------GGCCCTTCC
T ss_pred             ----ccccccccccccccccccccccchhhhhccccccccc------------------------------ccccccccc
Confidence                5688999999999999999999999998765431110                              111113456


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH
Q 042906          193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL  272 (415)
Q Consensus       193 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  272 (415)
                      +|++.|+..++.+.+.+++..+.......+..|.||||.|+..|+.+++++|+++|++++ .++..|.||||+|+..++.
T Consensus       113 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~-~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTTCCCGGGGCTTSSCH
T ss_pred             hhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc-ccCCCCCCHHHHHHHCCCH
Confidence            788888888888888888777766444556779999999999999999999999999987 6899999999999999999


Q ss_pred             HHHHHHHHhCCCc
Q 042906          273 KVLKLLINKYPDA  285 (415)
Q Consensus       273 ~~v~~Ll~~~~~~  285 (415)
                      +++++|++...+.
T Consensus       192 ~~~~~l~~~~~~~  204 (221)
T d1iknd_         192 RIQQQLGQLTLEN  204 (221)
T ss_dssp             HHHHHHHTTSCGG
T ss_pred             HHHHHHHHcCCcc
Confidence            9999999887653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.6e-29  Score=204.19  Aligned_cols=117  Identities=25%  Similarity=0.367  Sum_probs=71.5

Q ss_pred             CHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH
Q 042906          227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW  306 (415)
Q Consensus       227 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  306 (415)
                      ++.+.+.........+.|.+.+.+.. .++..|.|||+.++..+..++++.+++.+.+ ++..|..|.||||+|+..|+.
T Consensus        92 ~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~  169 (209)
T d1ot8a_          92 TPLILAARLAIEGMVEDLITADADIN-AADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSY  169 (209)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhhhhhccccc-ccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhccccHH
Confidence            44444444444444555555555444 3455566666666666666666666666665 366666666666666666666


Q ss_pred             HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906          307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (415)
Q Consensus       307 ~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  348 (415)
                      +++++|+++|++   ++.+|..|+||||+|++.|+.+++++|
T Consensus       170 ~~v~~Ll~~gad---~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         170 EASKALLDNFAN---REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            666666666655   666666666666666666666666654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.1e-29  Score=205.19  Aligned_cols=197  Identities=26%  Similarity=0.270  Sum_probs=129.3

Q ss_pred             HHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcCh
Q 042906          136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNK  215 (415)
Q Consensus       136 ~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  215 (415)
                      |+|++|+++|++++...+..|.||||+|+..|+.+++++|++.+.                                   
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~-----------------------------------   47 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGA-----------------------------------   47 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcc-----------------------------------
Confidence            566666666665443334455555555555444444444443322                                   


Q ss_pred             hhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc
Q 042906          216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS  295 (415)
Q Consensus       216 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  295 (415)
                      . ++..+..+.++++.++..++.....................+.++.+.+.........+.|...+.+ ++.++..|+|
T Consensus        48 ~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t  125 (209)
T d1ot8a_          48 D-ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKT  125 (209)
T ss_dssp             C-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCB
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCC
Confidence            2 3444555666666666666666655555554444434555667777777777777777777777776 4777777777


Q ss_pred             HHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906          296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       296 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      ||++++..+..++++.+++.+.+   ++.+|..|.||||+|+..|+.+++++|+++ |+|++.+|.+|  +||||+|++.
T Consensus       126 ~l~~~~~~~~~~~~~~l~~~~~~---~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gad~n~~d~~g--~Tpl~~A~~~  199 (209)
T d1ot8a_         126 ALHWAAAVNNTEAVNILLMHHAN---RDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDHMD--RLPRDVASER  199 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHHT
T ss_pred             cchhhcccCcceeeeeecccccc---ccccccccccccchhccccHHHHHHHHHHC-CCCCCCcCCCC--CCHHHHHHHc
Confidence            77777777777777777777666   677777777777777777777777777765 77777777777  7777777774

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=4.8e-32  Score=234.97  Aligned_cols=248  Identities=13%  Similarity=0.099  Sum_probs=119.5

Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHH---HHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccC
Q 042906           29 TSSPGGNTVLHMAVRFRNQQVIRE---ILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQA  105 (415)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  105 (415)
                      .++..|.||||+|++.|+.+++++   |++.         +++++.++..|+||||+||++|+.++|++|+++|++++. 
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~---------~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~-  154 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTS---------DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-  154 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--C---------CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhC---------CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc-
Confidence            334456666666666666555544   3443         455555666666666666666666666666666665541 


Q ss_pred             CCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc--cccccCCcHHHHHHHcCChhHHHHHhhhCCCCc
Q 042906          106 GPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS--YINKAYQTPLSIAIDARLNDSACFIIDKSPESL  183 (415)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  183 (415)
                                ...+..|.||||+|+..|+.++|++|++.|+....  ..+.                             
T Consensus       155 ----------~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~-----------------------------  195 (346)
T d2ajaa1         155 ----------AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE-----------------------------  195 (346)
T ss_dssp             ----------HHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH-----------------------------
T ss_pred             ----------cccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccC-----------------------------
Confidence                      11223456666666666666666666666543311  1112                             


Q ss_pred             cCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHH
Q 042906          184 NTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPL  263 (415)
Q Consensus       184 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  263 (415)
                            .+.++++.|+.+|+.+++++|++.+.. ++       ++.+.+...++..+..+++........     +.+++
T Consensus       196 ------~~~t~l~~A~~~g~~~iv~~Ll~~ga~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l  256 (346)
T d2ajaa1         196 ------NYYAFRWAAVGRGHHNVINFLLDCPVM-LA-------YAEIHEFEYGEKYVNPFIARHVNRLKE-----MHDAF  256 (346)
T ss_dssp             ------HHHHHHHHHSTTCCHHHHHHHTTSHHH-HH-------HHHHCTTTTTTTTHHHHHHHHHHHHHH-----HHTTT
T ss_pred             ------CCcchhhHHhhcCHHHHHHHHHhCCCC-cc-------hHHHHHHHcCcHhhhHHHHHhhccchH-----HHHHH
Confidence                  233445555555555555555555433 11       122222233333333333222111100     00111


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccc--cccCCCCCCcHHHHHHhcCC
Q 042906          264 HLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL--INLVDRNGNTPLHLAAMGLH  341 (415)
Q Consensus       264 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~~~~g~t~l~~A~~~~~  341 (415)
                      +.+...+..+++...       .......+.++++.|+..+..+++++|++.+.....  .+..+..|+||||+|++.|+
T Consensus       257 ~~a~~~~~~~~~~~~-------~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn  329 (346)
T d2ajaa1         257 KLSNPDGVFDLVTKS-------ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN  329 (346)
T ss_dssp             TTTSSSSCCCCSSHH-------HHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTC
T ss_pred             HHhcccccHhHHhcc-------cccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCc
Confidence            111111111111000       000111123566666666777777777766544322  23445567777777777777


Q ss_pred             hHHHHHHhhc
Q 042906          342 SDVVFTLSRH  351 (415)
Q Consensus       342 ~~~~~~Ll~~  351 (415)
                      .+++++||+.
T Consensus       330 ~e~v~lLL~~  339 (346)
T d2ajaa1         330 QGACALLLSI  339 (346)
T ss_dssp             TTHHHHHTTS
T ss_pred             HHHHHHHhCC
Confidence            7777777764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=1.5e-31  Score=231.88  Aligned_cols=264  Identities=12%  Similarity=0.022  Sum_probs=172.2

Q ss_pred             ChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHH---HHhCCCCCcccccc
Q 042906           78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRI---LVEKDSVPSSYINK  154 (415)
Q Consensus        78 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~---Ll~~~~~~~~~~~~  154 (415)
                      ++++.+...+..++.+.+...+++....  .......+..++..|.|||++|+.+|+.+++++   |++.|+++. ..+.
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~~~~  124 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRN--AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQA  124 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTT--CTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CH
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccc--hhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-ccCC
Confidence            3334444445567778887777665532  222334456778899999999999999887766   788888765 6788


Q ss_pred             cCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhh--hcccccCCCCHHHHH
Q 042906          155 AYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKEL--IDRLDWHQRNPLHYA  232 (415)
Q Consensus       155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~~~~~t~l~~a  232 (415)
                      .|+||||+|+..|+.+++++|++.+++.........|.||||+|+..|+.+++++|++.++..  .+..+..+.||++.|
T Consensus       125 ~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A  204 (346)
T d2ajaa1         125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA  204 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHH
Confidence            889999999999999999999988876655443456888999999889999888888877542  233344566777788


Q ss_pred             HhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHH
Q 042906          233 AASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI  312 (415)
Q Consensus       233 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  312 (415)
                      +.+|+.+++++|++.|++...        +.+.+...++..+..+++.                    ...+..+....+
T Consensus       205 ~~~g~~~iv~~Ll~~ga~~~~--------~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l  256 (346)
T d2ajaa1         205 VGRGHHNVINFLLDCPVMLAY--------AEIHEFEYGEKYVNPFIAR--------------------HVNRLKEMHDAF  256 (346)
T ss_dssp             STTCCHHHHHHHTTSHHHHHH--------HHHCTTTTTTTTHHHHHHH--------------------HHHHHHHHHTTT
T ss_pred             hhcCHHHHHHHHHhCCCCcch--------HHHHHHHcCcHhhhHHHHH--------------------hhccchHHHHHH
Confidence            888888888888888876652        2333333333333333332                    222222222222


Q ss_pred             hhCCCcccccccC-------CCCCCcHHHHHHhcCChHHHHHHhhccCc----CccccccccccchhHHHHHHh
Q 042906          313 LKSPEMENLINLV-------DRNGNTPLHLAAMGLHSDVVFTLSRHKSV----NIRAKNRSARNNIALEIAEIT  375 (415)
Q Consensus       313 l~~~~~~~~~~~~-------~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~----~~~~~d~~g~~~t~l~~a~~~  375 (415)
                      ...... ...+..       ...+.++++.|+..++.+++++|++....    +.+..+.+|  .||||+|++.
T Consensus       257 ~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g--~T~LhlA~~~  327 (346)
T d2ajaa1         257 KLSNPD-GVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA--NELLRLALRL  327 (346)
T ss_dssp             TTTSSS-SCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCC--CHHHHHHHHH
T ss_pred             HHhccc-ccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCC--CcHHHHHHHc
Confidence            111110 001111       11235789999999999999999976332    344555678  9999999995

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-28  Score=188.71  Aligned_cols=154  Identities=25%  Similarity=0.381  Sum_probs=126.0

Q ss_pred             CHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH
Q 042906          227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW  306 (415)
Q Consensus       227 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  306 (415)
                      ++||.|+..|+.+++++|+++|++++ ..+..|.||||+|+ .++.+++++|++++++ ++..+..|.++++.++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n-~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCcccccccccc-cccccccccccccccc-cccccccCccccccccccccc
Confidence            67888888888888888888888876 57888888888775 6788888888888887 578888888888888888888


Q ss_pred             HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHH
Q 042906          307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHL  386 (415)
Q Consensus       307 ~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~  386 (415)
                      +.+++|++.+..   ++..+..|.+|+++|+..++.+++++|+++.+.+++.+|.+|  +||||+|++       .++.+
T Consensus        80 ~~~~~l~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g--~TpL~~A~~-------~~~~~  147 (156)
T d1ihba_          80 DTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG--DTACDLARL-------YGRNE  147 (156)
T ss_dssp             HHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS--CCHHHHHHH-------TTCHH
T ss_pred             cccccccccccc---ccccccccccccccccccccccccccccccccccccccCCCC--CCHHHHHHH-------cCCHH
Confidence            888888888766   777888888888888888888888888887666888888888  888888888       46777


Q ss_pred             HHHHHHHHH
Q 042906          387 TLKALKTAY  395 (415)
Q Consensus       387 ~~~~L~~~G  395 (415)
                      ++++|+++|
T Consensus       148 iv~~Ll~~G  156 (156)
T d1ihba_         148 VVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            888888876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-27  Score=182.51  Aligned_cols=154  Identities=23%  Similarity=0.275  Sum_probs=141.4

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      .+||.|+..|++++|+.|++.|++++..|.+|.||||+|+ .|+.+++++|++.         +++++..+..+.+|++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~---------~a~~~~~~~~~~~~l~~   72 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR---------GANPDLKDRTGFAVIHD   72 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHT---------TCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccc---------ccccccccccCcccccc
Confidence            5799999999999999999999999999999999999886 7999999999998         56678889999999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHH
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~  162 (415)
                      ++..++.+.+++|++.+.+++             ..+..|.+|+++|+..++.+++++|+++++.....++..|.||||+
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~  139 (156)
T d1ihba_          73 AARAGFLDTLQTLLEFQADVN-------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL  139 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             ccccccccccccccccccccc-------------ccccccccccccccccccccccccccccccccccccCCCCCCHHHH
Confidence            999999999999999988766             5688999999999999999999999999986666889999999999


Q ss_pred             HHHcCChhHHHHHhhhC
Q 042906          163 AIDARLNDSACFIIDKS  179 (415)
Q Consensus       163 a~~~~~~~~~~~ll~~~  179 (415)
                      |+..++.+++++|+++|
T Consensus       140 A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         140 ARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHhcC
Confidence            99999999999998764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-27  Score=180.82  Aligned_cols=152  Identities=26%  Similarity=0.356  Sum_probs=140.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH
Q 042906          193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL  272 (415)
Q Consensus       193 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  272 (415)
                      +.|+.|+..|+.+.++.|+...+..++..+..|.||||+|+ .++.+++++|++++.+++ ..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccc-ccccccccccccccccccc
Confidence            56999999999999999999877779999999999999886 588999999999999887 5788899999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906          273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (415)
Q Consensus       273 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  351 (415)
                      ++++++++++++ ++.+|..|.||||+|+..|+.+++++|+ .|++   ++.+|..|+||||+|+..|+.+++++|++|
T Consensus        82 ~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~---~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD---LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC---TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccc-cccccCCCCeeecccccccccccccccc-cccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999998 6999999999999999999999999888 4555   899999999999999999999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=183.10  Aligned_cols=151  Identities=24%  Similarity=0.297  Sum_probs=138.8

Q ss_pred             CHHHHHHhcCCHHHHHHHHHhc-hhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC
Q 042906          227 NPLHYAAASGNVKMAQRLLEES-KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN  305 (415)
Q Consensus       227 t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  305 (415)
                      ..|+.|+..|+.++++.|++.+ .+++ ..+..|.||||+|+ .++.+++++|++++.+ ++..+..|.+|+++++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n-~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPD-ALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTT-CCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCC-ccCCCCCccccccc-cccccccccccccccc-cccccccccccccccccccc
Confidence            4699999999999999999874 4554 68999999999987 4889999999999998 59999999999999999999


Q ss_pred             HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHH
Q 042906          306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKH  385 (415)
Q Consensus       306 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~  385 (415)
                      .++++++++.|.+   ++.+|..|.||||+|+..|+.+++++|+.  |++++.+|..|  +||||+|++       .++.
T Consensus        81 ~~~~~~~l~~~~~---~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G--~TpL~~A~~-------~g~~  146 (156)
T d1bd8a_          81 LDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARG--LTPLELALQ-------RGAQ  146 (156)
T ss_dssp             HHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTS--CCHHHHHHH-------SCCH
T ss_pred             ccccccccccccc---cccccCCCCeeeccccccccccccccccc--cccccccCCCC--CCHHHHHHH-------cCCH
Confidence            9999999999987   89999999999999999999999999883  89999999999  999999999       5888


Q ss_pred             HHHHHHHHH
Q 042906          386 LTLKALKTA  394 (415)
Q Consensus       386 ~~~~~L~~~  394 (415)
                      +|+++|+++
T Consensus       147 ~iv~~Ll~h  155 (156)
T d1bd8a_         147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=9.4e-27  Score=177.78  Aligned_cols=150  Identities=27%  Similarity=0.333  Sum_probs=129.6

Q ss_pred             CCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC
Q 042906          226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN  305 (415)
Q Consensus       226 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  305 (415)
                      .|||+.|++.|+.+++++|+++|++..  .+..|.||||+|+..++.++++.++...... ...+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            388999999999999999999888654  5888999999999999999999888887774 6777778889999999999


Q ss_pred             HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHH
Q 042906          306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKH  385 (415)
Q Consensus       306 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~  385 (415)
                      .+++++++..+.+   ++.++..|+||||+|+..|+.+++++|+++ |+|++.+|.+|  .||||+|++       .++.
T Consensus        80 ~~~~~~l~~~~~~---~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~-gad~~~~d~~g--~Tpl~~A~~-------~g~~  146 (153)
T d1awcb_          80 ANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFC--KTAFDISID-------NGNE  146 (153)
T ss_dssp             HHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCH
T ss_pred             ceeeecccccCCc---cccccccCchHHHhhhhcchhheeeecccc-ccCCcccCCCC--CCHHHHHHH-------cCCH
Confidence            9999999988876   778888999999999999999999999876 89999999999  999999998       4777


Q ss_pred             HHHHHH
Q 042906          386 LTLKAL  391 (415)
Q Consensus       386 ~~~~~L  391 (415)
                      +++++|
T Consensus       147 eiv~lL  152 (153)
T d1awcb_         147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            888876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.4e-25  Score=171.08  Aligned_cols=150  Identities=27%  Similarity=0.384  Sum_probs=136.1

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      .++|+.|++.|+.++|+.||++|++++ .+..|+||||+|+..++.++++.++..         .......+..+.++++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~   72 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA---------GVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT---------TCCTTCCCTTCCCHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccc---------cccccccccccccccc
Confidence            368999999999999999999999887 688999999999999999999999987         4445667777889999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~  161 (415)
                      .++...+.+++++++.++++.+             .++..|.||||+|+..|+.+++++|++.|+++. ..+..|.||++
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tpl~  138 (153)
T d1awcb_          73 MAASEGHANIVEVLLKHGADVN-------------AKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFD  138 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             cccccccceeeecccccCCccc-------------cccccCchHHHhhhhcchhheeeeccccccCCc-ccCCCCCCHHH
Confidence            9999999999999999998766             578899999999999999999999999999886 67999999999


Q ss_pred             HHHHcCChhHHHHH
Q 042906          162 IAIDARLNDSACFI  175 (415)
Q Consensus       162 ~a~~~~~~~~~~~l  175 (415)
                      +|+..|+.+++++|
T Consensus       139 ~A~~~g~~eiv~lL  152 (153)
T d1awcb_         139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHhC
Confidence            99999999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3.9e-26  Score=164.70  Aligned_cols=108  Identities=28%  Similarity=0.290  Sum_probs=101.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhc
Q 042906          260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMG  339 (415)
Q Consensus       260 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~  339 (415)
                      .|||++|++.|+.+++++|+++|++ ++.++..|+||||+|+..++.+++++|++.|++   ++.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d---in~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT---TTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccce---eeecccccccchhhhhhc
Confidence            4799999999999999999999998 599999999999999999999999999999987   899999999999999999


Q ss_pred             CChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906          340 LHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI  374 (415)
Q Consensus       340 ~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~  374 (415)
                      |+.+++++|+++ |+|++.+|.+|  +||||+|..
T Consensus        79 ~~~~~v~~Ll~~-Gad~~~~d~~G--~t~l~~a~~  110 (118)
T d1myoa_          79 GHVSCVKLLLSK-GADKTVKGPDG--LTALEATDN  110 (118)
T ss_dssp             TCCHHHHHHHTT-CCCSSSSSSST--CCCCCTCSS
T ss_pred             Cchhhhhhhhcc-cccceeeCCCC--CCHHHHHhH
Confidence            999999999986 99999999999  999998844

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-25  Score=190.25  Aligned_cols=182  Identities=18%  Similarity=0.081  Sum_probs=118.2

Q ss_pred             CCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCH---HHHHHHHHhchhhhhccCCCCCCHHH
Q 042906          188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV---KMAQRLLEESKQLAYKRDCNGETPLH  264 (415)
Q Consensus       188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~---~~~~~Ll~~~~~~~~~~~~~g~t~L~  264 (415)
                      +..|.||||+|+..|+.++++.|++.+.+ ++.++..|+||||.|+..++.   ..+..+++.........+..|+||||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            46788888888888888888888888764 778888888999988876541   22223333322223356778889998


Q ss_pred             HHHHcCC----H--------HHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcH
Q 042906          265 LAAENGK----L--------KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTP  332 (415)
Q Consensus       265 ~A~~~~~----~--------~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~  332 (415)
                      .++..+.    .        .++.++++.+..........+.++++.+........+..+.........+|.+|..|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence            8775432    2        234556666655445555666666666665554443333221111122278999999999


Q ss_pred             HHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHH
Q 042906          333 LHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAE  373 (415)
Q Consensus       333 l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~  373 (415)
                      ||+|++.|+.+++++|+++ |+|++++|..|  +|||++|+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G--~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLDY-GADPFIANKSG--LRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHHT-TCCTTCCCTTS--CCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHHC-CCCCCCCCCCC--CCHHHHcC
Confidence            9999999999999999986 99999999999  99999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-25  Score=162.64  Aligned_cols=118  Identities=18%  Similarity=0.230  Sum_probs=71.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCC-cHHHHHHh
Q 042906          260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGN-TPLHLAAM  338 (415)
Q Consensus       260 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~-t~l~~A~~  338 (415)
                      .++||+|+..|+.+++++|+++|++ ++.++..|.||+|+|+ .|+.+++++|+++|++   ++.++..+. ||||+|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~---~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCCCHHHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-cccccccccccccccc---cccccccccccccccccc
Confidence            4556666666666666666666655 3666666666665443 4566666666666555   555555544 46666666


Q ss_pred             cCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHH
Q 042906          339 GLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALK  392 (415)
Q Consensus       339 ~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~  392 (415)
                      .|+.+++++|+++ |++++.+|..|  +||||+|++       .++.+++++|+
T Consensus        79 ~g~~~~v~~Ll~~-ga~~~~~d~~G--~T~l~~A~~-------~g~~~~v~~Ll  122 (125)
T d1bi7b_          79 EGFLDTLVVLHRA-GARLDVRDAWG--RLPVDLAEE-------LGHRDVARYLR  122 (125)
T ss_dssp             HTCHHHHHHHHHH-TCCSSCCCTTC--CCHHHHHHH-------HTCHHHHHHHS
T ss_pred             ccccccccccccc-ccccccccCCC--CCHHHHHHH-------cCCHHHHHHHH
Confidence            6666666666654 66666666666  666666666       35556666654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.5e-26  Score=166.81  Aligned_cols=106  Identities=21%  Similarity=0.282  Sum_probs=100.9

Q ss_pred             ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906            2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH   81 (415)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~   81 (415)
                      |.+|++|++.|+++.|+.|++.|++++..+..|+||||+|+..|+.+++++|++.         +++++.+|..|+||||
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~---------g~din~~d~~g~tpLh   73 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK---------GADINAPDKHHITPLL   73 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS---------SCTTTCCSSSCSCHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccc---------cceeeecccccccchh
Confidence            5799999999999999999999999999999999999999999999999999998         5678899999999999


Q ss_pred             HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHH
Q 042906           82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA  129 (415)
Q Consensus        82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  129 (415)
                      +|+.+|+.+++++|+++|++++             .+|..|.||||+|
T Consensus        74 ~A~~~~~~~~v~~Ll~~Gad~~-------------~~d~~G~t~l~~a  108 (118)
T d1myoa_          74 SAVYEGHVSCVKLLLSKGADKT-------------VKGPDGLTALEAT  108 (118)
T ss_dssp             HHHTTTCCHHHHHHHTTCCCSS-------------SSSSSTCCCCCTC
T ss_pred             hhhhcCchhhhhhhhcccccce-------------eeCCCCCCHHHHH
Confidence            9999999999999999999887             5789999999988

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.9e-25  Score=161.25  Aligned_cols=120  Identities=24%  Similarity=0.293  Sum_probs=109.8

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCC-cHHHHHHhc
Q 042906          225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDR-SILHVAAKH  303 (415)
Q Consensus       225 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~-t~l~~A~~~  303 (415)
                      +.++||+|+..|+.+++++|+++|++++ .++..|.||+|.|+ .|+.+++++|+++|++ ++..+..+. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-cccccccccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            4589999999999999999999999887 68889999999775 7999999999999999 588888776 699999999


Q ss_pred             CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906          304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (415)
Q Consensus       304 ~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  350 (415)
                      |+.+++++|+++|++   ++.+|..|+||||+|++.|+.+++++|++
T Consensus        80 g~~~~v~~Ll~~ga~---~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc---cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999987   89999999999999999999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.6e-24  Score=184.20  Aligned_cols=85  Identities=21%  Similarity=0.232  Sum_probs=67.6

Q ss_pred             ccccccC-CCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcH-------HHHHHH
Q 042906           24 QNIFSTS-SPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNR-------AIVSEI   95 (415)
Q Consensus        24 ~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~-------~~v~~L   95 (415)
                      +.+++.. |.+|+||||+||..|+.++|++|++.         +++++.+|..|+||||.||..++.       ++++++
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~---------gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l  166 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH---------GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL  166 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC---------CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH
Confidence            3566654 88999999999999999999999998         677889999999999999987752       344444


Q ss_pred             HhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcC
Q 042906           96 VKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ  133 (415)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  133 (415)
                      .+.                +...|..|+||||+++..+
T Consensus       167 ~~~----------------~~~~d~~g~t~lh~~~~~~  188 (301)
T d1sw6a_         167 YPC----------------LILEDSMNRTILHHIIITS  188 (301)
T ss_dssp             GGG----------------GGEECTTCCCHHHHHHHHH
T ss_pred             hhh----------------hhhcccccCCHHHHHHHHh
Confidence            332                2356889999999988643

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.4e-25  Score=162.06  Aligned_cols=122  Identities=18%  Similarity=0.146  Sum_probs=108.6

Q ss_pred             hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906            3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI   82 (415)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~   82 (415)
                      +.|+.|+..|++++|+.|++.|++++.+|.+|+||||+|+..|+.+++++|++.         +.+++.+|.+|+||||+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~---------g~~~~~~d~~g~tpLh~   73 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF---------GVNVNAADSDGWTPLHC   73 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH---------TCCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccc---------ccccccccccCcccccc
Confidence            468999999999999999999999999999999999999999999999999997         67788999999999999


Q ss_pred             HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHH--HHcCCHHHHHHHHhCC
Q 042906           83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA--VTNQHKRVIRILVEKD  145 (415)
Q Consensus        83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A--~~~~~~~~v~~Ll~~~  145 (415)
                      |+.+|+.+++++|+++|++++..            .+..+.||++++  +..|+.+++++|++.+
T Consensus        74 A~~~g~~~~v~~Ll~~ga~v~~~------------~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          74 AASCNNVQVCKFLVESGAAVFAM------------TYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCC------------CSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHcCCCcccc------------cCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999999988732            223577776655  5778899999998743

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.3e-24  Score=160.10  Aligned_cols=124  Identities=19%  Similarity=0.202  Sum_probs=111.5

Q ss_pred             HHHHHHHcCChhHHHHHHhhccccccC------CCCCCCHHHHHHHh---CCHHHHHHHHhccchHHHHHHhHhhhcCCC
Q 042906            4 ELLEVLRNGDENKIKQLALRQNIFSTS------SPGGNTVLHMAVRF---RNQQVIREILRQQNFIALRLHYSLLRQKNL   74 (415)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~------~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   74 (415)
                      .|+.|++.+|+..+..++..|.+++..      +..|+||||+|++.   |+.+++++|++.         +++++.+|.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~---------gadin~~d~   79 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---------SGNLDKQTG   79 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH---------CSCTTCCCT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc---------CCChhhhhh
Confidence            578999999999999999999776644      56799999999975   678999999997         567889999


Q ss_pred             CCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCc
Q 042906           75 MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS  149 (415)
Q Consensus        75 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  149 (415)
                      .|+||||+|+..|+.+++++|+++|++++             .+|..|.||||+|++.|+.+++++|++.++...
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~~-------------~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKASIE-------------IANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             hhccccccccccccccccccccccCcccc-------------ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999877             578999999999999999999999999876543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=159.99  Aligned_cols=125  Identities=22%  Similarity=0.209  Sum_probs=102.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcC
Q 042906          261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL  340 (415)
Q Consensus       261 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~  340 (415)
                      ++|+.|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.|++   ++.+|..|+||||+|+.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~---~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-ccccccccccccccccccccccccccccccccc---cccccccCcccccccchhh
Confidence            467888889999999999988888 588888899999999999999999999988877   8888889999999999999


Q ss_pred             ChHHHHHHhhccCcCcccccc-ccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906          341 HSDVVFTLSRHKSVNIRAKNR-SARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK  397 (415)
Q Consensus       341 ~~~~~~~Ll~~~g~~~~~~d~-~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~  397 (415)
                      +.+++++|+++ |++++..+. +|  +||++++...     +.++.+++++|++.+.+
T Consensus        79 ~~~~v~~Ll~~-ga~v~~~~~~~~--~~~~~~~~a~-----~~g~~eiv~~L~~~~~~  128 (130)
T d1ycsb1          79 NVQVCKFLVES-GAAVFAMTYSDM--QTAADKCEEM-----EEGYTQCSQFLYGVQEK  128 (130)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCSSSC--CCHHHHCCSS-----STTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCcccccCCCC--CCHHHHHHHH-----HcChHHHHHHHHhHHHh
Confidence            99999999976 888887765 47  8888777542     12456788888887654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.2e-23  Score=154.20  Aligned_cols=118  Identities=20%  Similarity=0.301  Sum_probs=55.2

Q ss_pred             HHHHHhcCCHHHHHHHHHhchhhhhc-----cCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 042906          229 LHYAAASGNVKMAQRLLEESKQLAYK-----RDCNGETPLHLAAEN---GKLKVLKLLINKYPDAIEIRDNSDRSILHVA  300 (415)
Q Consensus       229 l~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A  300 (415)
                      |+.|++.++...+..++..|.+....     .+..|.||||+|+..   +..+++++|+++|++ ++.+|..|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccccc
Confidence            34444555555555555544433211     133344455544432   344444444444444 344444444555544


Q ss_pred             HhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906          301 AKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (415)
Q Consensus       301 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  350 (415)
                      +..|+.+++++|+++|++   ++.+|..|+||||+|++.|+.+++++|++
T Consensus        89 ~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccCcc---ccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            444444444444444444   44444444445544444444444444443